6AWD Internal, hairpin and 3-way junction loop motifs

65 Internal loops
31 Hairpin loops
11 Junction loops

Valid loops

#	loop id	location	motif
1	IL_6AWD_001 ➜	1/A/30:32,1/A/552:553	NA
2	IL_6AWD_002 ➜	1/A/44:45,1/A/396:398	NA
3	IL_6AWD_003 ➜	1/A/47:52,1/A/359:361	NA
4	IL_6AWD_004 ➜	1/A/54:56,1/A/356:357	NA
5	IL_6AWD_005 ➜	1/A/63:66,1/A/103:104	NA
6	IL_6AWD_006 ➜	1/A/67:69,1/A/99:102	NA
7	IL_6AWD_007 ➜	1/A/70:73,1/A/97:98	NA
8	IL_6AWD_008 ➜	1/A/75:78,1/A/91:95	NA
9	IL_6AWD_009 ➜	1/A/128:131,1/A/231:233	NA
10	IL_6AWD_010 ➜	1/A/132:136,1/A/227:230	NA
11	IL_6AWD_011 ➜	1/A/144:146,1/A/176:178	NA
12	IL_6AWD_012 ➜	1/A/147:153,1/A/168:175	NA
13	IL_6AWD_013 ➜	1/A/203:206,1/A/213:214	NA
14	IL_6AWD_014 ➜	1/A/242:247,1/A/277:284	NA
15	IL_6AWD_015 ➜	1/A/248:252,1/A/274:276	NA
16	IL_6AWD_016 ➜	1/A/292:294,1/A/303:308	NA
17	IL_6AWD_017 ➜	1/A/367:369,1/A/392:393	NA
18	IL_6AWD_018 ➜	1/A/371:375,1/A/389:390	NA
19	IL_6AWD_019 ➜	1/A/375:377,1/A/386:389	NA
20	IL_6AWD_020 ➜	1/A/409:416,1/A/427:433	NA
21	IL_6AWD_021 ➜	1/A/440:442,1/A/492:497	NA
22	IL_6AWD_022 ➜	1/A/446:450,1/A/483:488	NA
23	IL_6AWD_023 ➜	1/A/450:455,1/A/477:483	NA
24	IL_6AWD_024 ➜	1/A/504:511,1/A/540:541	NA
25	IL_6AWD_025 ➜	1/A/515:521,1/A/528:536	NA
26	IL_6AWD_026 ➜	1/A/569:575,1/A/880:881	NA
27	IL_6AWD_027 ➜	1/A/580:584,1/A/757:761	NA
28	IL_6AWD_028 ➜	1/A/593:597,1/A/643:646	NA
29	IL_6AWD_029 ➜	1/A/597:598,1/A/640:643	NA
30	IL_6AWD_030 ➜	1/A/605:612,1/A/628:633	NA
31	IL_6AWD_031 ➜	1/A/654:656,1/A/750:754	NA
32	IL_6AWD_032 ➜	1/A/659:660,1/A/745:747	NA
33	IL_6AWD_033 ➜	1/A/662:667,1/A/739:743	NA
34	IL_6AWD_034 ➜	1/A/684:688,1/A/699:706	NA
35	IL_6AWD_035 ➜	1/A/774:779,1/A/803:805	NA
36	IL_6AWD_036 ➜	1/A/779:783,1/A/799:803	NA
37	IL_6AWD_037 ➜	1/A/887:896,1/A/903:910	NA
38	IL_6AWD_038 ➜	1/A/922:924,1/A/1392:1395	NA
39	IL_6AWD_039 ➜	1/A/925:927,1/A/1390:1391	NA
40	IL_6AWD_040 ➜	1/A/933:935,1/A/1380:1384	NA
41	IL_6AWD_041 ➜	1/A/953:954,1/A/1226:1228	NA
42	IL_6AWD_042 ➜	1/A/993:997,1/A/1044:1045	NA
43	IL_6AWD_043 ➜	1/A/998:999,1/A/1041:1043	NA
44	IL_6AWD_044 ➜	1/A/1003:1006,1/A/1023:1037	NA
45	IL_6AWD_045 ➜	1/A/1048:1050,1/A/1208:1209	NA
46	IL_6AWD_046 ➜	1/A/1051:1056,1/A/1204:1207	NA
47	IL_6AWD_047 ➜	1/A/1057:1058,1/A/1199:1203	NA
48	IL_6AWD_048 ➜	1/A/1060:1061,1/A/1195:1197	NA
49	IL_6AWD_049 ➜	1/A/1061:1063,1/A/1193:1195	NA
50	IL_6AWD_050 ➜	1/A/1124:1128,1/A/1144:1149	NA
51	IL_6AWD_051 ➜	1/A/1129:1132,1/A/1142:1143	NA
52	IL_6AWD_052 ➜	1/A/1158:1161,1/A/1175:1181	NA
53	IL_6AWD_053 ➜	1/A/1246:1253,1/A/1284:1291	NA
54	IL_6AWD_054 ➜	1/A/1255:1258,1/A/1277:1282	NA
55	IL_6AWD_055 ➜	1/A/1259:1263,1/A/1272:1276	NA
56	IL_6AWD_056 ➜	1/A/1303:1308,1/A/1329:1334	NA
57	IL_6AWD_057 ➜	1/A/1399:1401,1/A/1501:1504	NA
58	IL_6AWD_058 ➜	1/A/1401:1404,1/A/1497:1501	NA
59	IL_6AWD_059 ➜	1/A/1405:1407,1/A/1494:1496	NA
60	IL_6AWD_060 ➜	1/A/1407:1409,1/A/1491:1494	NA
61	IL_6AWD_061 ➜	1/A/1412:1414,1/A/1486:1488	NA
62	IL_6AWD_062 ➜	1/A/1416:1419,1/A/1481:1484	NA
63	IL_6AWD_063 ➜	1/A/1430:1435,1/A/1466:1470	NA
64	IL_6AWD_064 ➜	1/A/1439:1442,1/A/1460:1462	NA
65	IL_6AWD_065 ➜	1/A/1445:1448,1/A/1455:1457	NA

Problematic loops

No problematic loops

Valid loops

#	loop id	location	motif
1	HL_6AWD_001 ➜	1/A/11:23	NA
2	HL_6AWD_002 ➜	1/A/78:91	NA
3	HL_6AWD_003 ➜	1/A/158:163	NA
4	HL_6AWD_004 ➜	1/A/186:191	NA
5	HL_6AWD_005 ➜	1/A/206:213	NA
6	HL_6AWD_006 ➜	1/A/259:267	NA
7	HL_6AWD_007 ➜	1/A/296:301	NA
8	HL_6AWD_008 ➜	1/A/320:333	NA
9	HL_6AWD_009 ➜	1/A/342:347	NA
10	HL_6AWD_010 ➜	1/A/379:384	NA
11	HL_6AWD_011 ➜	1/A/419:424	NA
12	HL_6AWD_012 ➜	1/A/462:470	NA
13	HL_6AWD_013 ➜	1/A/522:527	NA
14	HL_6AWD_014 ➜	1/A/617:623	NA
15	HL_6AWD_015 ➜	1/A/689:698	NA
16	HL_6AWD_016 ➜	1/A/726:731	NA
17	HL_6AWD_017 ➜	1/A/786:796	NA
18	HL_6AWD_018 ➜	1/A/840:846	NA
19	HL_6AWD_019 ➜	1/A/862:867	NA
20	HL_6AWD_020 ➜	1/A/897:902	NA
21	HL_6AWD_021 ➜	1/A/963:972	NA
22	HL_6AWD_022 ➜	1/A/1012:1017	NA
23	HL_6AWD_023 ➜	1/A/1076:1081	NA
24	HL_6AWD_024 ➜	1/A/1089:1096	NA
25	HL_6AWD_025 ➜	1/A/1134:1140	NA
26	HL_6AWD_026 ➜	1/A/1165:1171	NA
27	HL_6AWD_027 ➜	1/A/1265:1270	NA
28	HL_6AWD_028 ➜	1/A/1314:1323	NA
29	HL_6AWD_029 ➜	1/A/1356:1366	NA
30	HL_6AWD_030 ➜	1/A/1449:1454	NA
31	HL_6AWD_031 ➜	1/A/1515:1520	NA

Problematic loops

No problematic loops

Valid loops

#	loop id	location	motif
1	J3_6AWD_001 ➜	1/A/46:47,1/A/361:367,1/A/393:395	NA
2	J3_6AWD_002 ➜	1/A/586:588,1/A/651:654,1/A/754:755	NA
3	J3_6AWD_003 ➜	1/A/826:829,1/A/857:861,1/A/868:874	NA
4	J3_6AWD_004 ➜	1/A/936:939,1/A/1344:1350,1/A/1372:1379	NA
5	J3_6AWD_005 ➜	1/A/943:946,1/A/1235:1237,1/A/1337:1340	NA
6	J3_6AWD_006 ➜	1/A/954:962,1/A/973:984,1/A/1221:1226	NA
7	J3_6AWD_007 ➜	1/A/990:993,1/A/1045:1047,1/A/1210:1215	NA
8	J3_6AWD_008 ➜	1/A/1063:1068,1/A/1107:1113,1/A/1187:1193	NA
9	J3_6AWD_009 ➜	1/A/1073:1074,1/A/1083:1087,1/A/1098:1102	NA
10	J3_6AWD_010 ➜	1/A/1115:1118,1/A/1155:1158,1/A/1181:1185	NA
11	J3_6AWD_011 ➜	1/A/1237:1241,1/A/1296:1303,1/A/1334:1337	NA

Problematic loops

No problematic loops

Coloring options: Nucleotide numbers