6O7K Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6O7K_001 | 1/g/12:22 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
| HL_6O7K_002 | 1/g/82:87 | No text annotation Not in a motif group | ||
| HL_6O7K_003 | 1/g/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_6O7K_004 | 1/g/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
| HL_6O7K_005 | 1/g/206:213 | No text annotation Not in a motif group | ||
| HL_6O7K_006 | 1/g/259:267 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_6O7K_007 | 1/g/296:301 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_6O7K_008 | 1/g/320:333 | No text annotation Not in a motif group | homologous HL_5J7L_008 HL_81205.2 | |
| HL_6O7K_009 | 1/g/342:347 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_03562.2 | |
| HL_6O7K_010 | 1/g/379:384 | GNRA Not in a motif group | homologous HL_5J7L_010 HL_42097.1 | |
| HL_6O7K_011 | 1/g/419:424 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_6O7K_012 | 1/g/462:470 | No text annotation Not in a motif group | homologous HL_5J7L_012 HL_84085.2 | |
| HL_6O7K_013 | 1/g/522:527 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_6O7K_014 | 1/g/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.1 | |
| HL_6O7K_015 | 1/g/689:698 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_6O7K_016 | 1/g/726:731 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_6O7K_017 | 1/g/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.1 | |
| HL_6O7K_018 | 1/g/840:846 | No text annotation Not in a motif group | ||
| HL_6O7K_019 | 1/g/862:867 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
| HL_6O7K_020 | 1/g/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_6O7K_021 | 1/g/963:972 | No text annotation Not in a motif group | homologous HL_5J7L_021 NA | |
| HL_6O7K_022 | 1/g/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_6O7K_023 | 1/g/1028:1033 | No text annotation Not in a motif group | ||
| HL_6O7K_024 | 1/g/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_6O7K_025 | 1/g/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_6O7K_026 | 1/g/1134:1140 | No text annotation Not in a motif group | homologous HL_4LFB_026 HL_03562.2 | |
| HL_6O7K_027 | 1/g/1165:1171 | No text annotation Not in a motif group | homologous HL_5J7L_026 HL_90617.2 | |
| HL_6O7K_028 | 1/g/1265:1270 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_42097.1 | |
| HL_6O7K_029 | 1/g/1314:1323 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_6O7K_030 | 1/g/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_6O7K_031 | 1/g/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_03562.2 | |
| HL_6O7K_032 | 1/g/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_6O7K_033 | 1/v/13:23 | No text annotation Not in a motif group | homologous HL_1QF6_001 NA | |
| HL_6O7K_034 | 1/v/32:40 | tRNA anticodon loop Not in a motif group | homologous HL_6UFG_007 HL_53597.2 | |
| HL_6O7K_035 | 1/v/53:63 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6O7K_001 | 1/g/30:32, 1/g/552:553 | Single bulged G Not in a motif group | homologous IL_4LFB_001 IL_00225.2 | |
| IL_6O7K_002 | 1/g/44:45, 1/g/396:398 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.2 | |
| IL_6O7K_003 | 1/g/47:52, 1/g/359:361 | No text annotation Not in a motif group | geometric IL_5J7L_003 IL_11178.1 | |
| IL_6O7K_004 | 1/g/54:56, 1/g/356:357 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_6O7K_005 | 1/g/63:66, 1/g/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_6O7K_006 | 1/g/67:69, 1/g/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
| IL_6O7K_007 | 1/g/70:73, 1/g/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
| IL_6O7K_008 | 1/g/75:76, 1/g/93:95 | Stack outside cWW Not in a motif group | geometric IL_6JQ6_004 IL_16396.2 | |
| IL_6O7K_009 | 1/g/128:131, 1/g/231:233 | No text annotation Not in a motif group | ||
| IL_6O7K_010 | 1/g/132:136, 1/g/227:230 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_6O7K_011 | 1/g/144:146, 1/g/176:178 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_51629.2 | |
| IL_6O7K_012 | 1/g/147:153, 1/g/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_6O7K_013 | 1/g/203:206, 1/g/213:214 | Minor groove platform Not in a motif group | geometric IL_3MXH_005 IL_15052.1 | |
| IL_6O7K_014 | 1/g/242:247, 1/g/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.2 | |
| IL_6O7K_015 | 1/g/249:252, 1/g/274:275 | No text annotation Not in a motif group | homologous IL_5J7L_015 IL_48100.2 | |
| IL_6O7K_016 | 1/g/292:293, 1/g/304:308 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_6O7K_017 | 1/g/367:369, 1/g/392:393 | Single bulged U Not in a motif group | geometric IL_5J7L_017 IL_83039.13 | |
| IL_6O7K_018 | 1/g/371:375, 1/g/389:390 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_6O7K_019 | 1/g/375:376, 1/g/387:389 | Single bulged G Not in a motif group | homologous IL_5J7L_019 IL_00225.2 | |
| IL_6O7K_020 | 1/g/409:416, 1/g/427:433 | No text annotation Not in a motif group | homologous IL_5J7L_020 IL_28026.1 | |
| IL_6O7K_021 | 1/g/440:442, 1/g/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
| IL_6O7K_022 | 1/g/446:450, 1/g/483:488 | tSH-tHW-tWW Not in a motif group | homologous IL_5J7L_022 IL_88269.3 | |
| IL_6O7K_023 | 1/g/450:455, 1/g/477:483 | No text annotation Not in a motif group | geometric IL_5J7L_023 IL_70801.1 | |
| IL_6O7K_024 | 1/g/504:511, 1/g/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_6O7K_025 | 1/g/515:521, 1/g/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_6O7K_026 | 1/g/569:575, 1/g/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_6O7K_027 | 1/g/580:584, 1/g/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.1 | |
| IL_6O7K_028 | 1/g/594:596, 1/g/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
| IL_6O7K_029 | 1/g/597:598, 1/g/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_6O7K_030 | 1/g/605:612, 1/g/628:633 | No text annotation Not in a motif group | homologous IL_5J7L_030 IL_78349.1 | |
| IL_6O7K_031 | 1/g/654:655, 1/g/751:754 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_1KUQ_001 IL_50694.2 | |
| IL_6O7K_032 | 1/g/658:659, 1/g/746:748 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.2 | |
| IL_6O7K_033 | 1/g/662:666, 1/g/740:743 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_6O7K_034 | 1/g/673:678, 1/g/712:717 | No text annotation Not in a motif group | geometric IL_4LFB_030 IL_04668.1 | |
| IL_6O7K_035 | 1/g/684:688, 1/g/699:706 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.2 | |
| IL_6O7K_036 | 1/g/774:778, 1/g/804:805 | Left turn Not in a motif group | homologous IL_4LFB_032 IL_29346.1 | |
| IL_6O7K_037 | 1/g/779:783, 1/g/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_17136.1 | |
| IL_6O7K_038 | 1/g/887:894, 1/g/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
| IL_6O7K_039 | 1/g/922:923, 1/g/1393:1395 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_6O7K_040 | 1/g/925:927, 1/g/1390:1391 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.2 | |
| IL_6O7K_041 | 1/g/933:935, 1/g/1380:1384 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_6O7K_042 | 1/g/953:954, 1/g/1226:1228 | No text annotation Not in a motif group | homologous IL_6CZR_150 NA | |
| IL_6O7K_043 | 1/g/993:997, 1/g/1044:1045 | Minor groove platform Not in a motif group | geometric IL_5J7L_043 IL_47078.1 | |
| IL_6O7K_044 | 1/g/998:999, 1/g/1041:1043 | Single stack bend Not in a motif group | homologous IL_5J7L_044 IL_76488.2 | |
| IL_6O7K_045 | 1/g/1048:1050, 1/g/1208:1209 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.13 | |
| IL_6O7K_046 | 1/g/1052:1056, 1/g/1204:1206 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_6O7K_047 | 1/g/1057:1058, 1/g/1199:1203 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_6O7K_048 | 1/g/1060:1061, 1/g/1195:1197 | Single bulged U Not in a motif group | homologous IL_4LFB_046 IL_83039.13 | |
| IL_6O7K_049 | 1/g/1061:1063, 1/g/1193:1195 | No text annotation Not in a motif group | geometric IL_6CZR_157 IL_95997.1 | |
| IL_6O7K_050 | 1/g/1124:1128, 1/g/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
| IL_6O7K_051 | 1/g/1129:1132, 1/g/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_6O7K_052 | 1/g/1158:1161, 1/g/1175:1181 | No text annotation Not in a motif group | geometric IL_4LFB_050 IL_42032.1 | |
| IL_6O7K_053 | 1/g/1246:1253, 1/g/1284:1291 | No text annotation Not in a motif group | ||
| IL_6O7K_054 | 1/g/1255:1258, 1/g/1277:1282 | No text annotation Not in a motif group | homologous IL_5J7L_055 IL_75461.4 | |
| IL_6O7K_055 | 1/g/1259:1263, 1/g/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_6O7K_056 | 1/g/1303:1308, 1/g/1329:1334 | No text annotation Not in a motif group | geometric IL_5J7L_057 IL_19954.2 | |
| IL_6O7K_057 | 1/g/1399:1401, 1/g/1501:1504 | No text annotation Not in a motif group | homologous IL_5J7L_058 IL_36143.3 | |
| IL_6O7K_058 | 1/g/1401:1404, 1/g/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_6O7K_059 | 1/g/1405:1407, 1/g/1494:1496 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
| IL_6O7K_060 | 1/g/1407:1409, 1/g/1491:1494 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_002 IL_82068.2 | |
| IL_6O7K_061 | 1/g/1412:1414, 1/g/1486:1488 | No text annotation Not in a motif group | homologous IL_4LFB_059 IL_95997.1 | |
| IL_6O7K_062 | 1/g/1416:1419, 1/g/1481:1484 | Double sheared Not in a motif group | homologous IL_4LFB_060 IL_09705.9 | |
| IL_6O7K_063 | 1/g/1430:1435, 1/g/1466:1470 | Triple sheared related Not in a motif group | homologous IL_5J7L_063 IL_64879.2 | |
| IL_6O7K_064 | 1/g/1440:1442, 1/g/1460:1461 | Minor groove platform Not in a motif group | homologous IL_5J7L_064 IL_42622.2 | |
| IL_6O7K_065 | 1/g/1445:1448, 1/g/1455:1457 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6O7K_001 | 1/g/46:47, 1/g/361:367, 1/g/393:395 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
| J3_6O7K_002 | 1/g/586:588, 1/g/651:654, 1/g/754:755 | No text annotation Not in a motif group | homologous J3_5J7L_002 NA | |
| J3_6O7K_003 | 1/g/672:673, 1/g/717:725, 1/g/732:734 | No text annotation Not in a motif group | homologous J3_5J7L_003 NA | |
| J3_6O7K_004 | 1/g/826:829, 1/g/857:861, 1/g/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_6O7K_005 | 1/g/943:946, 1/g/1235:1237, 1/g/1337:1340 | No text annotation Not in a motif group | ||
| J3_6O7K_006 | 1/g/955:962, 1/g/973:984, 1/g/1221:1225 | No text annotation Not in a motif group | ||
| J3_6O7K_007 | 1/g/990:993, 1/g/1045:1047, 1/g/1210:1215 | No text annotation Not in a motif group | homologous J3_5J7L_007 NA | |
| J3_6O7K_008 | 1/g/1003:1006, 1/g/1023:1028, 1/g/1033:1037 | No text annotation Not in a motif group | ||
| J3_6O7K_009 | 1/g/1063:1068, 1/g/1107:1113, 1/g/1187:1193 | No text annotation Not in a motif group | ||
| J3_6O7K_010 | 1/g/1073:1074, 1/g/1083:1087, 1/g/1098:1102 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
| J3_6O7K_011 | 1/g/1116:1118, 1/g/1155:1158, 1/g/1181:1184 | No text annotation Not in a motif group | homologous J3_5J7L_010 NA | |
| J3_6O7K_012 | 1/g/1237:1241, 1/g/1296:1303, 1/g/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_009 NA |
Problematic loops
No problematic loops
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