RNA 3D Hub //

6O7K Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6O7K_0011/g/12:22No text annotation
homologous
HL_5J7L_001
HL_89881.5
HL_6O7K_0021/g/82:87No text annotation
geometric
HL_5J7L_214
HL_08100.1
HL_6O7K_0031/g/158:163GNRA
homologous
HL_5J7L_003
HL_37824.7
HL_6O7K_0041/g/186:191GNRA
homologous
HL_5J7L_004
HL_37824.7
HL_6O7K_0361/g/207:212UNCG
homologous
HL_5J7L_005
HL_34617.5
HL_6O7K_0061/g/259:267GNRA related
homologous
HL_5J7L_006
HL_84299.4
HL_6O7K_0071/g/296:301GNRA
homologous
HL_5J7L_007
HL_37824.7
HL_6O7K_0081/g/320:333No text annotation
homologous
HL_5J7L_008
HL_81205.3
HL_6O7K_0091/g/342:347UNCG
homologous
HL_6CZR_080
NA
HL_6O7K_0101/g/379:384GNRA
homologous
HL_5J7L_010
HL_37824.7
HL_6O7K_0111/g/419:424UNCG
homologous
HL_4LFB_011
HL_34617.5
HL_6O7K_0121/g/462:470GNRA related
homologous
HL_5J7L_012
HL_81538.2
HL_6O7K_0131/g/522:527No text annotation
geometric
HL_4WF9_003
HL_75660.5
HL_6O7K_0141/g/617:623No text annotation
homologous
HL_5J7L_014
HL_10453.3
HL_6O7K_0151/g/689:698No text annotation
homologous
HL_4LFB_015
HL_75293.5
HL_6O7K_0161/g/726:731GNRA
homologous
HL_5J7L_016
HL_37824.7
HL_6O7K_0171/g/786:796No text annotation
homologous
HL_5J7L_017
HL_75293.5
HL_6O7K_0181/g/840:846Externally structured
geometric
HL_8C3A_022
NA
HL_6O7K_0191/g/862:867GNRA
homologous
HL_5J7L_019
HL_37824.7
HL_6O7K_0201/g/897:902GNRA
homologous
HL_4LFB_020
HL_37824.7
HL_6O7K_0211/g/963:972No text annotation
homologous
HL_5J7L_021
HL_50779.4
HL_6O7K_0221/g/1012:1017GNRA
homologous
HL_4LFB_022
HL_37824.7
HL_6O7K_0231/g/1028:1033No text annotation
geometric
HL_6CZR_082
NA
HL_6O7K_0241/g/1076:1081GNRA
homologous
HL_5J7L_023
HL_37824.7
HL_6O7K_0251/g/1089:1096T-loop related
homologous
HL_4LFB_025
HL_77436.5
HL_6O7K_0261/g/1134:1140No text annotation
homologous
HL_4LFB_026
HL_87954.2
HL_6O7K_0271/g/1165:1171GNRA
homologous
HL_5J7L_026
HL_93535.1
HL_6O7K_0281/g/1265:1270GNRA
homologous
HL_5J7L_027
HL_37824.7
HL_6O7K_0291/g/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_02887.3
HL_6O7K_0301/g/1356:1366No text annotation
homologous
HL_4LFB_030
HL_06226.4
HL_6O7K_0311/g/1449:1454UNCG
homologous
HL_5J7L_030
HL_34617.5
HL_6O7K_0321/g/1515:1520GNRA
homologous
HL_4LFB_032
HL_37824.7
HL_6O7K_0331/v/13:23tRNA D-loop
homologous
HL_1QF6_001
HL_20811.4
HL_6O7K_0341/v/32:40tRNA anticodon loop
homologous
HL_6UFG_007
HL_06059.5
HL_6O7K_0371/v/54:62No text annotation

Problematic loops

#loop idProblemSequence
HL_6O7K_005No text annotation
HL_6O7K_035No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6O7K_0011/g/30:32,
1/g/552:553		Single bulged G
homologous
IL_4LFB_001
IL_00225.13
IL_6O7K_0021/g/44:45,
1/g/396:398		Single bulged A
homologous
IL_5J7L_002
IL_31462.5
IL_6O7K_0031/g/47:52,
1/g/359:361		No text annotation
geometric
IL_5J7L_003
IL_14177.2
IL_6O7K_0041/g/54:56,
1/g/356:357		Minor groove platform
homologous
IL_4LFB_004
IL_51454.2
IL_6O7K_0051/g/63:66,
1/g/103:104		Multiple bulged bases
homologous
IL_4LFB_005
IL_82107.4
IL_6O7K_0061/g/67:69,
1/g/99:102		Minor groove platform with extra cWW
homologous
IL_5J7L_006
IL_90351.1
IL_6O7K_0071/g/70:73,
1/g/97:98		Minor groove platform
homologous
IL_5J7L_007
IL_15052.4
IL_6O7K_0081/g/75:76,
1/g/93:95		Stack outside cWW
geometric
IL_6JQ6_004
IL_66635.5
IL_6O7K_0091/g/128:131,
1/g/231:233		Isolated non-canonical cWW pair
homologous
IL_5J7L_009
IL_57744.1
IL_6O7K_0101/g/132:136,
1/g/227:230		No text annotation
homologous
IL_4LFB_008
IL_64231.5
IL_6O7K_0111/g/144:146,
1/g/176:178		Isolated cWH basepair
homologous
IL_5J7L_011
IL_10167.5
IL_6O7K_0121/g/147:153,
1/g/168:175		tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
IL_80604.6
IL_6O7K_0131/g/203:206,
1/g/213:214		Minor groove platform
geometric
IL_3MXH_005
IL_15052.4
IL_6O7K_0141/g/242:247,
1/g/277:284		Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
IL_46174.3
IL_6O7K_0151/g/249:252,
1/g/274:275		No text annotation
homologous
IL_5J7L_015
IL_47074.2
IL_6O7K_0161/g/292:293,
1/g/304:308		C-loop
homologous
IL_4LFB_013
IL_03109.3
IL_6O7K_0171/g/367:369,
1/g/392:393		Single bulged U
geometric
IL_5J7L_017
IL_89505.4
IL_6O7K_0181/g/371:375,
1/g/389:390		C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_6O7K_0191/g/375:376,
1/g/387:389		Single bulged G
homologous
IL_5J7L_019
IL_00225.13
IL_6O7K_0201/g/409:416,
1/g/427:433		No text annotation
homologous
IL_5J7L_020
IL_28026.3
IL_6O7K_0211/g/440:442,
1/g/492:497		No text annotation
homologous
IL_5J7L_021
IL_33323.1
IL_6O7K_0221/g/446:450,
1/g/483:488		tSH-tHW-tWW
homologous
IL_5J7L_022
IL_88269.4
IL_6O7K_0231/g/450:455,
1/g/477:483		No text annotation
geometric
IL_5J7L_023
IL_70801.1
IL_6O7K_0241/g/504:511,
1/g/540:541		SSU/LSU pseudoknot
homologous
IL_5J7L_024
IL_41203.4
IL_6O7K_0251/g/515:521,
1/g/528:536		Kink-turn related
geometric
IL_4V88_415
NA
IL_6O7K_0261/g/569:575,
1/g/880:881		No text annotation
homologous
IL_4LFB_022
IL_38186.6
IL_6O7K_0271/g/580:584,
1/g/757:761		tSH-tHW-tHS
homologous
IL_5J7L_027
IL_17136.7
IL_6O7K_0281/g/594:596,
1/g/644:645		Major groove platform
homologous
IL_5J7L_028
IL_48076.6
IL_6O7K_0291/g/597:598,
1/g/640:643		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_029
IL_68140.4
IL_6O7K_0301/g/605:612,
1/g/628:633		No text annotation
homologous
IL_5J7L_030
IL_78349.3
IL_6O7K_0311/g/654:655,
1/g/751:754		Major groove platform; stack outside cWW
geometric
IL_1KUQ_001
IL_50694.7
IL_6O7K_0321/g/658:659,
1/g/746:748		Single stack bend
homologous
IL_5J7L_032
IL_26793.1
IL_6O7K_0331/g/662:666,
1/g/740:743		Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
IL_85033.2
IL_6O7K_0671/g/673:677,
1/g/713:717		Triple non-canonical cWW pairs
homologous
IL_4LFB_065
IL_49751.4
IL_6O7K_0351/g/684:688,
1/g/699:706		Kink-turn
homologous
IL_5J7L_035
IL_01488.3
IL_6O7K_0361/g/774:778,
1/g/804:805		Left turn
homologous
IL_4LFB_032
IL_29346.2
IL_6O7K_0371/g/779:783,
1/g/799:803		tSH-tHW-tHS
homologous
IL_5J7L_037
IL_17136.7
IL_6O7K_0381/g/887:894,
1/g/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
IL_41756.4
IL_6O7K_0391/g/922:923,
1/g/1393:1395		Single bulged A
homologous
IL_5J7L_039
IL_31462.5
IL_6O7K_0401/g/925:927,
1/g/1390:1391		Single bulged G
homologous
IL_5J7L_040
IL_00225.13
IL_6O7K_0411/g/933:935,
1/g/1380:1384		Minor groove platform
homologous
IL_5J7L_041
IL_47078.3
IL_6O7K_0421/g/953:954,
1/g/1226:1228		No text annotation
homologous
IL_6CZR_150
NA
IL_6O7K_0431/g/993:997,
1/g/1044:1045		Minor groove platform
geometric
IL_5J7L_043
IL_47078.3
IL_6O7K_0441/g/998:999,
1/g/1041:1043		Single stack bend
homologous
IL_5J7L_044
IL_26793.1
IL_6O7K_0451/g/1048:1050,
1/g/1208:1209		Single bulged U
homologous
IL_4LFB_042
IL_89505.4
IL_6O7K_0461/g/1052:1056,
1/g/1204:1206		Isolated cWS basepair
homologous
IL_4LFB_044
IL_76319.5
IL_6O7K_0471/g/1057:1058,
1/g/1199:1203		Minor groove platform
homologous
IL_4LFB_045
IL_95583.2
IL_6O7K_0481/g/1060:1061,
1/g/1195:1197		Single bulged U
homologous
IL_4LFB_046
IL_89505.4
IL_6O7K_0491/g/1061:1063,
1/g/1193:1195		Isolated non-canonical cWW pair
geometric
IL_6CZR_157
NA
IL_6O7K_0501/g/1124:1128,
1/g/1144:1149		No text annotation
homologous
IL_5J7L_051
IL_06691.1
IL_6O7K_0681/g/1124:1129,
1/g/1143:1149		No text annotation
IL_6O7K_0691/g/1124:1132,
1/g/1142:1149		No text annotation
IL_6O7K_0511/g/1129:1132,
1/g/1142:1143		Minor groove platform
homologous
IL_5J7L_052
IL_15052.4
IL_6O7K_0521/g/1158:1161,
1/g/1175:1181		No text annotation
geometric
IL_4LFB_050
IL_42032.1
IL_6O7K_0701/g/1247:1253,
1/g/1284:1290		No text annotation
homologous
IL_5J7L_054
IL_09129.2
IL_6O7K_0541/g/1255:1258,
1/g/1277:1282		180 degree turn
homologous
IL_5J7L_055
IL_11344.2
IL_6O7K_0551/g/1259:1263,
1/g/1272:1276		Triple sheared
homologous
IL_5J7L_056
IL_17948.2
IL_6O7K_0561/g/1303:1308,
1/g/1329:1334		No text annotation
geometric
IL_5J7L_057
IL_85536.2
IL_6O7K_0571/g/1399:1401,
1/g/1501:1504		No text annotation
homologous
IL_5J7L_058
IL_61438.4
IL_6O7K_0581/g/1401:1404,
1/g/1497:1501		No text annotation
geometric
IL_4V88_464
NA
IL_6O7K_0591/g/1405:1407,
1/g/1494:1496		Isolated non-canonical cWW pair
geometric
IL_4V88_465
NA
IL_6O7K_0601/g/1407:1409,
1/g/1491:1494		Isolated non-canonical cWW pair
geometric
IL_3TD0_002
IL_57744.1
IL_6O7K_0611/g/1412:1414,
1/g/1486:1488		Isolated non-canonical cWW pair
homologous
IL_4LFB_059
IL_87907.2
IL_6O7K_0621/g/1416:1419,
1/g/1481:1484		Double sheared
homologous
IL_4LFB_060
IL_09705.15
IL_6O7K_0631/g/1430:1435,
1/g/1466:1470		Triple sheared related
homologous
IL_5J7L_063
IL_80231.1
IL_6O7K_0641/g/1440:1442,
1/g/1460:1461		Single bulged A
homologous
IL_5J7L_064
IL_31462.5
IL_6O7K_0651/g/1445:1448,
1/g/1455:1457		No text annotation
homologous
IL_5J7L_065
IL_31531.3

Problematic loops

#loop idProblemSequence
IL_6O7K_066No text annotation
IL_6O7K_034No text annotation
IL_6O7K_053No text annotation
IL_6O7K_071No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6O7K_0011/g/46:47,
1/g/361:367,
1/g/393:395		No text annotation
homologous
J3_5J7L_001
J3_67856.4
J3_6O7K_0131/g/46:52,
1/g/359:367,
1/g/393:395		No text annotation
homologous
J3_5J7L_050
J3_46317.4
J3_6O7K_0021/g/586:588,
1/g/651:654,
1/g/754:755		No text annotation
homologous
J3_5J7L_002
J3_56052.5
J3_6O7K_0141/g/586:588,
1/g/651:655,
1/g/751:755		No text annotation
homologous
J3_5J7L_051
J3_17385.4
J3_6O7K_0031/g/672:673,
1/g/717:725,
1/g/732:734		No text annotation
homologous
J3_5J7L_003
J3_11934.4
J3_6O7K_0041/g/826:829,
1/g/857:861,
1/g/868:874		No text annotation
homologous
J3_5J7L_004
J3_85054.4
J3_6O7K_0151/g/936:939,
1/g/1344:1350,
1/g/1372:1379		No text annotation
homologous
J3_5J7L_052
J3_25303.4
J3_6O7K_0051/g/943:946,
1/g/1235:1237,
1/g/1337:1340		No text annotation
homologous
J3_4LFB_003
J3_52655.4
J3_6O7K_0061/g/955:962,
1/g/973:984,
1/g/1221:1225		No text annotation
homologous
J3_5J7L_006
J3_83516.4
J3_6O7K_0071/g/990:993,
1/g/1045:1047,
1/g/1210:1215		No text annotation
homologous
J3_5J7L_007
J3_82572.1
J3_6O7K_0161/g/990:997,
1/g/1044:1047,
1/g/1210:1215		No text annotation
homologous
J3_5J7L_053
J3_76475.2
J3_6O7K_0181/g/1003:1006,
1/g/1023:1027,
1/g/1034:1037		No text annotation
J3_6O7K_0091/g/1063:1068,
1/g/1107:1113,
1/g/1187:1193		No text annotation
homologous
J3_5J7L_008
J3_08394.3
J3_6O7K_0101/g/1073:1074,
1/g/1083:1087,
1/g/1098:1102		No text annotation
homologous
J3_5J7L_009
J3_76043.3
J3_6O7K_0111/g/1116:1118,
1/g/1155:1158,
1/g/1181:1184		No text annotation
homologous
J3_5J7L_010
J3_82365.4
J3_6O7K_0171/g/1116:1118,
1/g/1155:1161,
1/g/1175:1184		No text annotation
homologous
J3_4LFB_018
J3_17791.2
J3_6O7K_0121/g/1237:1241,
1/g/1296:1303,
1/g/1334:1337		No text annotation
homologous
J3_4LFB_009
J3_37047.6
J4_6O7K_0011/g/115:122,
1/g/239:240,
1/g/286:289,
1/g/311:312		No text annotation
homologous
J4_5J7L_001
J4_35578.3
J4_6O7K_0021/g/142:144,
1/g/178:184,
1/g/193:198,
1/g/219:221		No text annotation
homologous
J4_5J7L_002
J4_01665.1
J4_6O7K_0031/g/575:577,
1/g/764:769,
1/g/810:821,
1/g/879:880		No text annotation
homologous
J4_5J7L_003
J4_61885.6
J4_6O7K_0041/v/7:10,
1/v/26:28,
1/v/44:50,
1/v/66:67		tRNA junction
homologous
J4_3WQY_001
J4_70449.27
J5_6O7K_0011/g/36:39,
1/g/403:406,
1/g/436:440,
1/g/497:500,
1/g/545:548		No text annotation
homologous
J5_5J7L_001
J5_92941.1
J5_6O7K_0021/g/36:39,
1/g/403:406,
1/g/436:442,
1/g/492:500,
1/g/545:548		No text annotation
homologous
J5_5J7L_002
J5_67416.1
J5_6O7K_0031/g/58:61,
1/g/106:113,
1/g/314:316,
1/g/337:339,
1/g/350:354		No text annotation
homologous
J5_4LFB_002
J5_59910.6

Problematic loops

#loop idProblemSequence
J3_6O7K_008No text annotation

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