4D61 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4D61_001 | 1/1/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_4D61_002 | 1/1/63:85 | No text annotation Not in a motif group | ||
| HL_4D61_003 | 1/1/156:162 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_4D61_004 | 1/1/196:203 | No text annotation Not in a motif group | ||
| HL_4D61_006 | 1/1/322:329 | T-loop with 1 bulged base Not in a motif group | geometric HL_5TBW_005 HL_89380.2 | |
| HL_4D61_007 | 1/1/377:387 | No text annotation Not in a motif group | geometric HL_4WSM_226 HL_22031.1 | |
| HL_4D61_008 | 1/1/416:421 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_4D61_009 | 1/1/441:452 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_4D61_010 | 1/1/462:467 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_4D61_011 | 1/1/498:504 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_4D61_012 | 1/1/539:544 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_4D61_013 | 1/1/569:581 | No text annotation Not in a motif group | ||
| HL_4D61_014 | 1/1/618:623 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_4D61_015 | 1/1/820:828 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_4D61_016 | 1/1/833:841 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_4D61_017 | 1/1/884:902 | No text annotation Not in a motif group | ||
| HL_4D61_018 | 1/1/957:966 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_4D61_019 | 1/1/994:999 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_4D61_020 | 1/1/1054:1064 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_4D61_021 | 1/1/1112:1121 | No text annotation Not in a motif group | ||
| HL_4D61_022 | 1/1/1141:1146 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_4D61_023 | 1/1/1178:1183 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_4D61_024 | 1/1/1245:1254 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_73530.2 | |
| HL_4D61_025 | 1/1/1294:1305 | No text annotation Not in a motif group | ||
| HL_4D61_026 | 1/1/1353:1358 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_4D61_027 | 1/1/1366:1373 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_4D61_028 | 1/1/1420:1427 | No text annotation Not in a motif group | ||
| HL_4D61_029 | 1/1/1459:1467 | No text annotation Not in a motif group | geometric HL_3RG5_006 HL_49288.1 | |
| HL_4D61_030 | 1/1/1565:1570 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_4D61_031 | 1/1/1614:1625 | No text annotation Not in a motif group | ||
| HL_4D61_032 | 1/1/1658:1666 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_4D61_033 | 1/1/1763:1769 | GNRA Not in a motif group | geometric HL_3SUX_002 HL_42097.1 | |
| HL_4D61_034 | 1/1/1847:1852 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 | |
| HL_4D61_035 | 1/j/6051:6076 | No text annotation Not in a motif group | ||
| HL_4D61_036 | 1/j/6110:6115 | No text annotation Not in a motif group | ||
| HL_4D61_037 | 1/j/6141:6147 | No text annotation Not in a motif group | ||
| HL_4D61_038 | 1/j/6183:6194 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4D61_005 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4D61_001 | 1/1/23:26, 1/1/648:651 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5C5W_001 IL_30621.2 | |
| IL_4D61_002 | 1/1/34:36, 1/1/519:521 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_51629.2 | |
| IL_4D61_003 | 1/1/36:40, 1/1/514:519 | No text annotation Not in a motif group | homologous IL_4V88_386 IL_41507.1 | |
| IL_4D61_004 | 1/1/41:47, 1/1/479:481 | No text annotation Not in a motif group | homologous IL_4V88_387 IL_33912.1 | |
| IL_4D61_005 | 1/1/49:51, 1/1/476:477 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_4D61_006 | 1/1/56:62, 1/1/86:89 | No text annotation Not in a motif group | ||
| IL_4D61_007 | 1/1/108:112, 1/1/349:353 | No text annotation Not in a motif group | ||
| IL_4D61_008 | 1/1/112:115, 1/1/348:349 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_4D61_009 | 1/1/115:121, 1/1/343:348 | No text annotation Not in a motif group | ||
| IL_4D61_010 | 1/1/146:151, 1/1/167:174 | No text annotation Not in a motif group | ||
| IL_4D61_011 | 1/1/152:154, 1/1/164:166 | No text annotation Not in a motif group | homologous IL_4V88_395 IL_53251.2 | |
| IL_4D61_012 | 1/1/186:192, 1/1/207:213 | No text annotation Not in a motif group | ||
| IL_4D61_013 | 1/1/317:319, 1/1/332:333 | No text annotation Not in a motif group | ||
| IL_4D61_014 | 1/1/359:364, 1/1/396:403 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_4D61_015 | 1/1/366:371, 1/1/393:394 | No text annotation Not in a motif group | geometric IL_4ERD_001 IL_59677.2 | |
| IL_4D61_016 | 1/1/411:413, 1/1/424:429 | No text annotation Not in a motif group | ||
| IL_4D61_017 | 1/1/437:439, 1/1/454:456 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_4D61_018 | 1/1/459:461, 1/1/468:470 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_4D61_019 | 1/1/487:489, 1/1/511:512 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.13 | |
| IL_4D61_020 | 1/1/491:495, 1/1/508:509 | C-loop Not in a motif group | geometric IL_4LFB_015 IL_75255.1 | |
| IL_4D61_021 | 1/1/495:496, 1/1/506:508 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_4D61_022 | 1/1/530:531, 1/1/553:555 | Single bulged A Not in a motif group | homologous IL_4V88_409 IL_37497.2 | |
| IL_4D61_023 | 1/1/535:539, 1/1/544:549 | No text annotation Not in a motif group | ||
| IL_4D61_024 | 1/1/565:569, 1/1/581:585 | No text annotation Not in a motif group | ||
| IL_4D61_025 | 1/1/599:608, 1/1/635:637 | No text annotation Not in a motif group | geometric IL_4V88_470 IL_51629.2 | |
| IL_4D61_026 | 1/1/611:617, 1/1/624:632 | No text annotation Not in a motif group | homologous IL_4V88_415 IL_55871.1 | |
| IL_4D61_027 | 1/1/663:665, 1/1/1162:1164 | Isolated cWH basepair Not in a motif group | geometric IL_406D_002 IL_51629.2 | |
| IL_4D61_028 | 1/1/673:675, 1/1/1030:1032 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_4D61_029 | 1/1/676:680, 1/1/1025:1029 | tSH-tHW-tHS Not in a motif group | homologous IL_4V88_418 IL_17136.1 | |
| IL_4D61_030 | 1/1/692:694, 1/1/738:739 | No text annotation Not in a motif group | ||
| IL_4D61_031 | 1/1/752:754, 1/1/790:791 | No text annotation Not in a motif group | ||
| IL_4D61_032 | 1/1/802:803, 1/1/860:863 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V88_423 IL_09061.6 | |
| IL_4D61_033 | 1/1/804:807, 1/1/856:859 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_7A0S_040 IL_30621.2 | |
| IL_4D61_034 | 1/1/807:815, 1/1/849:856 | No text annotation Not in a motif group | geometric IL_4V88_425 IL_69091.1 | |
| IL_4D61_035 | 1/1/877:879, 1/1/907:909 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_427 IL_51629.2 | |
| IL_4D61_036 | 1/1/922:923, 1/1/1019:1022 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_428 IL_50694.2 | |
| IL_4D61_037 | 1/1/925:927, 1/1/1014:1017 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_009 IL_82068.2 | |
| IL_4D61_038 | 1/1/928:931, 1/1/1010:1013 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_4D61_039 | 1/1/931:935, 1/1/1007:1010 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_4D61_040 | 1/1/942:945, 1/1/981:984 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_4D61_041 | 1/1/950:956, 1/1/967:976 | No text annotation Not in a motif group | homologous IL_8C3A_440 IL_22252.1 | |
| IL_4D61_042 | 1/1/1042:1047, 1/1/1071:1073 | Other IL Not in a motif group | homologous IL_4V88_435 IL_22046.1 | |
| IL_4D61_043 | 1/1/1047:1051, 1/1/1067:1071 | tSH-tHW-tHS Not in a motif group | geometric IL_4V88_436 IL_17136.1 | |
| IL_4D61_044 | 1/1/1091:1093, 1/1/1152:1158 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_4D61_045 | 1/1/1098:1101, 1/1/1131:1134 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.2 | |
| IL_4D61_046 | 1/1/1101:1103, 1/1/1129:1131 | No text annotation Not in a motif group | geometric IL_5UNE_009 IL_53251.2 | |
| IL_4D61_047 | 1/1/1108:1110, 1/1/1123:1124 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.13 | |
| IL_4D61_048 | 1/1/1168:1175, 1/1/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_4D61_049 | 1/1/1202:1205, 1/1/1693:1697 | No text annotation Not in a motif group | ||
| IL_4D61_050 | 1/1/1206:1210, 1/1/1689:1692 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_30621.2 | |
| IL_4D61_051 | 1/1/1213:1217, 1/1/1681:1686 | No text annotation Not in a motif group | ||
| IL_4D61_052 | 1/1/1230:1232, 1/1/1526:1528 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_4D61_053 | 1/1/1235:1236, 1/1/1521:1523 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_4D61_054 | 1/1/1269:1272, 1/1/1510:1513 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4EYA_008 IL_30621.2 | |
| IL_4D61_055 | 1/1/1281:1290, 1/1/1309:1316 | No text annotation Not in a motif group | ||
| IL_4D61_056 | 1/1/1291:1293, 1/1/1306:1308 | No text annotation Not in a motif group | homologous IL_4V88_448 IL_10023.1 | |
| IL_4D61_057 | 1/1/1325:1327, 1/1/1502:1503 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_4D61_058 | 1/1/1328:1333, 1/1/1498:1501 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.2 | |
| IL_4D61_059 | 1/1/1333:1335, 1/1/1492:1498 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4V88_451 IL_92788.2 | |
| IL_4D61_060 | 1/1/1337:1338, 1/1/1488:1490 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.2 | |
| IL_4D61_061 | 1/1/1347:1349, 1/1/1380:1382 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_4D61_062 | 1/1/1395:1397, 1/1/1448:1450 | No text annotation Not in a motif group | geometric IL_5UNE_001 IL_53251.2 | |
| IL_4D61_063 | 1/1/1397:1399, 1/1/1447:1448 | No text annotation Not in a motif group | ||
| IL_4D61_064 | 1/1/1401:1406, 1/1/1440:1445 | No text annotation Not in a motif group | ||
| IL_4D61_065 | 1/1/1408:1413, 1/1/1433:1438 | No text annotation Not in a motif group | ||
| IL_4D61_066 | 1/1/1415:1419, 1/1/1428:1431 | No text annotation Not in a motif group | ||
| IL_4D61_067 | 1/1/1537:1539, 1/1/1594:1596 | No text annotation Not in a motif group | geometric IL_6OL3_002 IL_95997.1 | |
| IL_4D61_068 | 1/1/1550:1558, 1/1/1577:1582 | No text annotation Not in a motif group | ||
| IL_4D61_069 | 1/1/1559:1562, 1/1/1573:1576 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_461 IL_30621.2 | |
| IL_4D61_070 | 1/1/1604:1610, 1/1/1629:1635 | No text annotation Not in a motif group | homologous IL_8C3A_469 IL_10092.1 | |
| IL_4D61_071 | 1/1/1700:1702, 1/1/1833:1836 | No text annotation Not in a motif group | homologous IL_4V88_463 IL_36143.3 | |
| IL_4D61_072 | 1/1/1702:1705, 1/1/1829:1833 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_4D61_073 | 1/1/1706:1708, 1/1/1826:1828 | UU cWW water inserted Not in a motif group | geometric IL_4E48_002 IL_95997.1 | |
| IL_4D61_074 | 1/1/1708:1711, 1/1/1822:1826 | Non canonical cWW and near pair Not in a motif group | homologous IL_4V88_466 IL_42334.1 | |
| IL_4D61_075 | 1/1/1713:1716, 1/1/1817:1820 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6CZR_168 IL_67743.1 | |
| IL_4D61_076 | 1/1/1717:1720, 1/1/1813:1816 | Double sheared Not in a motif group | geometric IL_4V88_468 IL_09705.9 | |
| IL_4D61_077 | 1/1/1720:1722, 1/1/1812:1813 | No text annotation Not in a motif group | ||
| IL_4D61_078 | 1/1/1729:1731, 1/1/1803:1805 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_4D61_079 | 1/1/1733:1736, 1/1/1798:1801 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_4D61_080 | 1/1/1739:1742, 1/1/1792:1795 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_473 IL_30621.2 | |
| IL_4D61_081 | 1/1/1742:1747, 1/1/1787:1792 | No text annotation Not in a motif group | ||
| IL_4D61_082 | 1/1/1750:1752, 1/1/1780:1784 | No text annotation Not in a motif group | homologous IL_4V88_475 IL_95997.1 | |
| IL_4D61_083 | 1/j/6127:6129, 1/j/6157:6159 | No text annotation Not in a motif group | ||
| IL_4D61_084 | 1/j/6130:6132, 1/j/6154:6156 | No text annotation Not in a motif group | ||
| IL_4D61_085 | 1/j/6132:6140, 1/j/6148:6154 | No text annotation Not in a motif group | ||
| IL_4D61_086 | 1/j/6180:6183, 1/j/6194:6196 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4D61_001 | 1/1/40:41, 1/1/481:487, 1/1/512:514 | No text annotation Not in a motif group | ||
| J3_4D61_002 | 1/1/681:684, 1/1/918:922, 1/1/1022:1024 | No text annotation Not in a motif group | ||
| J3_4D61_003 | 1/1/816:819, 1/1/829:831, 1/1/843:848 | No text annotation Not in a motif group | ||
| J3_4D61_004 | 1/1/938:941, 1/1/985:993, 1/1/1000:1004 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_4D61_005 | 1/1/1094:1097, 1/1/1135:1140, 1/1/1147:1151 | No text annotation Not in a motif group | ||
| J3_4D61_006 | 1/1/1218:1221, 1/1/1645:1651, 1/1/1673:1680 | No text annotation Not in a motif group | homologous J3_8C3A_038 NA | |
| J3_4D61_007 | 1/1/1237:1245, 1/1/1254:1266, 1/1/1516:1520 | No text annotation Not in a motif group | ||
| J3_4D61_008 | 1/1/1272:1277, 1/1/1320:1324, 1/1/1504:1510 | No text annotation Not in a motif group | ||
| J3_4D61_009 | 1/1/1340:1345, 1/1/1384:1389, 1/1/1481:1486 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_4D61_010 | 1/1/1350:1351, 1/1/1360:1365, 1/1/1374:1379 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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