Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6GC6_0011/A/59:68No text annotation
Not in a motif group
homologous
HL_5J7L_134
HL_29414.1
HL_6GC6_0021/A/87:95No text annotation
Not in a motif group
homologous
HL_5J7L_135
HL_17926.5
HL_6GC6_0031/A/123:128No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_62869.3
HL_6GC6_0041/A/137:142No text annotation
Not in a motif group
HL_6GC6_0051/A/158:168No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_6GC6_0061/A/194:201No text annotation
Not in a motif group
homologous
HL_4WF9_006
HL_23481.5
HL_6GC6_0071/A/225:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_35894.3
HL_6GC6_0081/A/246:252No text annotation
Not in a motif group
homologous
HL_4WF9_008
HL_67216.5
HL_6GC6_0091/A/305:312T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_68493.6
HL_6GC6_0101/A/319:323No text annotation
Not in a motif group
homologous
HL_7A0S_011
HL_98557.5
HL_6GC6_0111/A/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.6
HL_6GC6_0121/A/382:392No text annotation
Not in a motif group
HL_6GC6_0131/A/410:417No text annotation
Not in a motif group
homologous
HL_4WF9_014
HL_32512.8
HL_6GC6_0141/A/462:467GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_43074.18
HL_6GC6_0151/A/487:493No text annotation
Not in a motif group
homologous
HL_5J7L_148
HL_68304.6
HL_6GC6_0161/A/543:550No text annotation
Not in a motif group
homologous
HL_7RQB_017
NA
HL_6GC6_0171/A/566:575No text annotation
Not in a motif group
homologous
HL_7RQB_018
HL_33239.17
HL_6GC6_0181/A/611:617No text annotation
Not in a motif group
homologous
HL_5J7L_151
HL_25660.1
HL_6GC6_0191/A/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_43074.18
HL_6GC6_0201/A/641:647No text annotation
Not in a motif group
homologous
HL_5J7L_153
HL_16419.1
HL_6GC6_0231/A/779:785Other HL
Not in a motif group
geometric
HL_1P6V_001
HL_79299.11
HL_6GC6_0241/A/826:831No text annotation
Not in a motif group
homologous
HL_7RQB_025
HL_15942.5
HL_6GC6_0261/A/955:962No text annotation
Not in a motif group
homologous
HL_7A0S_026
HL_43074.18
HL_6GC6_0271/A/978:985No text annotation
Not in a motif group
homologous
HL_5J7L_160
HL_72451.5
HL_6GC6_0281/A/1171:1178No text annotation
Not in a motif group
HL_6GC6_0291/A/1222:1227Other HL
Not in a motif group
homologous
HL_5J7L_164
HL_43074.18
HL_6GC6_0301/A/1281:1289No text annotation
Not in a motif group
homologous
HL_7A0S_032
HL_33239.17
HL_6GC6_0311/A/1324:1330No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_86880.5
HL_6GC6_0321/A/1363:1368Other HL
Not in a motif group
homologous
HL_5J7L_167
HL_43074.18
HL_6GC6_0331/A/1389:1398No text annotation
Not in a motif group
homologous
HL_4WF9_035
HL_78457.4
HL_6GC6_0341/A/1451:1459No text annotation
Not in a motif group
geometric
HL_6U8D_003
HL_18722.3
HL_6GC6_0351/A/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_86880.5
HL_6GC6_0361/A/1533:1538UNCG
Not in a motif group
homologous
HL_5J7L_171
HL_79299.11
HL_6GC6_0371/A/1565:1568No text annotation
Not in a motif group
homologous
HL_5J7L_172
HL_69353.7
HL_6GC6_0381/A/1612:1619No text annotation
Not in a motif group
homologous
HL_4WF9_038
HL_66171.3
HL_6GC6_0391/A/1630:1636GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_02361.6
HL_6GC6_0411/A/1727:1733No text annotation
Not in a motif group
HL_6GC6_0421/A/1752:1756No text annotation
Not in a motif group
homologous
HL_5J7L_177
HL_79272.3
HL_6GC6_0461/A/2027:2036No text annotation
Not in a motif group
homologous
HL_4WF9_047
HL_90642.5
HL_6GC6_0481/A/2658:2663GNRA
Not in a motif group
geometric
HL_4WF9_016
HL_43074.18
HL_6GC6_0491/A/2701:2706Ribsomal LSU H95
Not in a motif group
homologous
HL_7A0S_064
HL_67719.1
HL_6GC6_0501/A/2745:2759No text annotation
Not in a motif group
homologous
HL_7RQB_066
HL_56677.5
HL_6GC6_0511/A/2796:2799No text annotation
Not in a motif group
geometric
HL_4V88_192
HL_69353.7
HL_6GC6_0521/A/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_05018.6
HL_6GC6_0531/A/2856:2861No text annotation
Not in a motif group
homologous
HL_7A0S_068
HL_43074.18

Problematic loops

#loop idProblemSequence
HL_6GC6_021No text annotation
HL_6GC6_022No text annotation
HL_6GC6_025No text annotation
HL_6GC6_040UNCG
HL_6GC6_043No text annotation
HL_6GC6_044No text annotation
HL_6GC6_045No text annotation
HL_6GC6_047No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6GC6_0011/A/24:30,
1/A/510:516
Triple sheared with non-canonical cWW
Not in a motif group
homologous
IL_4WF9_001
IL_66414.5
IL_6GC6_0021/A/36:37,
1/A/442:444
Single bulged A
Not in a motif group
homologous
IL_4WF9_002
IL_80007.16
IL_6GC6_0031/A/42:44,
1/A/434:437
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_4WF9_003
IL_87332.1
IL_6GC6_0041/A/81:85,
1/A/97:105
No text annotation
Not in a motif group
homologous
IL_5J7L_248
IL_85931.1
IL_6GC6_0051/A/188:194,
1/A/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_7A0S_006
IL_04346.5
IL_6GC6_0061/A/239:245,
1/A/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_007
IL_35110.5
IL_6GC6_0071/A/269:271,
1/A/366:370
No text annotation
Not in a motif group
homologous
IL_5J7L_252
IL_47972.1
IL_6GC6_0081/A/274:281,
1/A/359:363
No text annotation
Not in a motif group
homologous
IL_5J7L_253
IL_77870.1
IL_6GC6_0091/A/292:295,
1/A/343:348
No text annotation
Not in a motif group
IL_6GC6_0101/A/481:484,
1/A/496:509
No text annotation
Not in a motif group
homologous
IL_5J7L_255
IL_60992.5
IL_6GC6_0111/A/536:539,
1/A/554:557
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.7
IL_6GC6_0121/A/564:566,
1/A/575:577
CC cWW
Not in a motif group
geometric
IL_4E59_001
IL_01312.13
IL_6GC6_0131/A/606:610,
1/A/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_5J7L_258
IL_56467.6
IL_6GC6_0141/A/672:674,
1/A/806:808
No text annotation
Not in a motif group
homologous
IL_7RQB_017
IL_01312.13
IL_6GC6_0151/A/674:678,
1/A/799:806
No text annotation
Not in a motif group
geometric
IL_7RQB_018
IL_17470.5
IL_6GC6_0211/A/844:847,
1/A/933:934
Other IL
Not in a motif group
geometric
IL_5J7L_267
IL_31836.1
IL_6GC6_0221/A/847:848,
1/A/930:933
Stack outside cWW
Not in a motif group
homologous
IL_5J7L_268
IL_37629.1
IL_6GC6_0231/A/850:851,
1/A/926:928
Single stack bend
Not in a motif group
homologous
IL_5J7L_269
IL_04038.4
IL_6GC6_0241/A/856:862,
1/A/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_5TBW_038
IL_93830.2
IL_6GC6_0251/A/862:863,
1/A/913:915
Single bulged G
Not in a motif group
homologous
IL_5J7L_271
IL_59137.10
IL_6GC6_0261/A/993:996,
1/A/1159:1161
No text annotation
Not in a motif group
geometric
IL_4YHW_001
IL_01312.13
IL_6GC6_0271/A/998:1002,
1/A/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_4WF9_036
IL_53523.5
IL_6GC6_0281/A/1004:1011,
1/A/1150:1151
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_5J7L_278
IL_15861.6
IL_6GC6_0291/A/1011:1013,
1/A/1149:1150
Single bulged U
Not in a motif group
homologous
IL_4WF9_038
IL_83039.11
IL_6GC6_0301/A/1018:1024,
1/A/1140:1144
No text annotation
Not in a motif group
homologous
IL_4WF9_039
IL_57188.3
IL_6GC6_0311/A/1024:1030,
1/A/1124:1140
No text annotation
Not in a motif group
IL_6GC6_0321/A/1196:1198,
1/A/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_5J7L_286
IL_67621.5
IL_6GC6_0331/A/1202:1206,
1/A/1240:1243
No text annotation
Not in a motif group
homologous
IL_5J7L_287
IL_91920.1
IL_6GC6_0341/A/1208:1215,
1/A/1234:1238
Kink-turn
Not in a motif group
homologous
IL_7RQB_047
IL_29549.9
IL_6GC6_0351/A/1262:1269,
1/A/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_289
IL_04346.5
IL_6GC6_0361/A/1310:1313,
1/A/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_6N5P_003
IL_70995.6
IL_6GC6_0371/A/1319:1323,
1/A/1331:1333
C-loop
Not in a motif group
homologous
IL_5J7L_291
IL_08376.2
IL_6GC6_0381/A/1351:1355,
1/A/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_7A0S_048
IL_34907.2
IL_6GC6_0391/A/1357:1361,
1/A/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_39521.5
IL_6GC6_0401/A/1415:1417,
1/A/1581:1587
No text annotation
Not in a motif group
IL_6GC6_0411/A/1417:1421,
1/A/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_53523.5
IL_6GC6_0421/A/1432:1435,
1/A/1557:1561
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_85877.10
IL_6GC6_0431/A/1437:1440,
1/A/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_7A0S_053
IL_08757.3
IL_6GC6_0441/A/1450:1451,
1/A/1459:1461
Single bulged U
Not in a motif group
homologous
IL_5J7L_298
IL_83039.11
IL_6GC6_0451/A/1468:1471,
1/A/1520:1524
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_6GC6_0461/A/1474:1479,
1/A/1512:1517
tSH-tHW-tHS-cWW
Not in a motif group
geometric
IL_6DVK_004
IL_76308.3
IL_6GC6_0471/A/1481:1482,
1/A/1507:1510
No text annotation
Not in a motif group
homologous
IL_5J7L_301
IL_67474.3
IL_6GC6_0481/A/1489:1491,
1/A/1499:1500
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_80007.16
IL_6GC6_0491/A/1526:1530,
1/A/1541:1546
Triple sheared related
Not in a motif group
geometric
IL_4V9F_018
IL_64879.1
IL_6GC6_0501/A/1651:1656,
1/A/2004:2006
No text annotation
Not in a motif group
homologous
IL_7A0S_059
IL_12566.2
IL_6GC6_0511/A/1663:1665,
1/A/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_4WF9_063
IL_54997.5
IL_6GC6_0521/A/1666:1669,
1/A/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_7RQB_066
IL_80663.10
IL_6GC6_0531/A/1669:1674,
1/A/1990:1993
Intercalated tWH
Not in a motif group
geometric
IL_4WF9_065
IL_01312.13
IL_6GC6_0551/A/1712:1718,
1/A/1742:1746
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_309
IL_88269.2
IL_6GC6_0561/A/1719:1724,
1/A/1736:1741
No text annotation
Not in a motif group
geometric
IL_5TBW_026
IL_19954.1
IL_6GC6_0591/A/2050:2052,
1/A/2617:2618
Major groove platform
Not in a motif group
homologous
IL_5J7L_320
IL_80663.10
IL_6GC6_0601/A/2053:2057,
1/A/2611:2616
No text annotation
Not in a motif group
IL_6GC6_0611/A/2636:2640,
1/A/2774:2782
tSH-tHS-tHW
Not in a motif group
homologous
IL_7RQB_102
IL_34907.2
IL_6GC6_0621/A/2652:2658,
1/A/2663:2668
Sarcin-Ricin target in LSU H95; G-bulge
Not in a motif group
homologous
IL_7A0S_094
IL_35110.5
IL_6GC6_0631/A/2680:2684,
1/A/2725:2727
C-loop
Not in a motif group
homologous
IL_5J7L_347
IL_63596.4
IL_6GC6_0641/A/2687:2691,
1/A/2718:2722
No text annotation
Not in a motif group
homologous
IL_5J7L_348
IL_08296.3
IL_6GC6_0651/A/2695:2696,
1/A/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_4WF9_103
IL_13730.12
IL_6GC6_0661/A/2737:2742,
1/A/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_5J7L_350
IL_49767.4
IL_6GC6_0671/A/2795:2796,
1/A/2799:2801
Single bulged A
Not in a motif group
geometric
IL_5J7L_261
IL_80007.16
IL_6GC6_0681/A/2806:2811,
1/A/2889:2892
No text annotation
Not in a motif group
geometric
IL_5J7L_351
IL_82988.1
IL_6GC6_0691/A/2838:2839,
1/A/2878:2880
Major groove intercalation
Not in a motif group
homologous
IL_5J7L_352
IL_80663.10
IL_6GC6_0701/A/2843:2846,
1/A/2870:2874
Multiple bulged bases with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_353
IL_58764.1
IL_6GC6_0711/A/2847:2852,
1/A/2865:2869
No text annotation
Not in a motif group
homologous
IL_7RQB_110
IL_83162.3

Problematic loops

#loop idProblemSequence
IL_6GC6_016Single bulged A
IL_6GC6_017Single bulged G
IL_6GC6_018Triple sheared
IL_6GC6_019No text annotation
IL_6GC6_020Multiple bulged bases
IL_6GC6_054tSH-tSH-tHH-tHS
IL_6GC6_057Single stack bend
IL_6GC6_058Kink-turn related

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6GC6_0011/A/56:57,
1/A/70:76,
1/A/110:114
No text annotation
Not in a motif group
homologous
J3_5J7L_037
NA
J3_6GC6_0041/A/1298:1303,
1/A/1625:1627,
1/A/1639:1642
No text annotation
Not in a motif group
homologous
J3_5J7L_041
NA
J3_6GC6_0051/A/1306:1310,
1/A/1604:1611,
1/A/1620:1622
No text annotation
Not in a motif group
J3_6GC6_0061/A/1344:1349,
1/A/1382:1385,
1/A/1402:1403
No text annotation
Not in a motif group
homologous
J3_5J7L_043
NA
J3_6GC6_0071/A/2789:2791,
1/A/2805:2806,
1/A/2892:2894
No text annotation
Not in a motif group
homologous
J3_5J7L_047
NA
J3_6GC6_0081/A/2812:2815,
1/A/2831:2836,
1/A/2882:2888
No text annotation
Not in a motif group
homologous
J3_5J7L_048
NA

Problematic loops

#loop idProblemSequence
J3_6GC6_002No text annotation
J3_6GC6_003No text annotation

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