6GC6 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6GC6_001 | 1/A/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_29414.1 | |
| HL_6GC6_002 | 1/A/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_17926.5 | |
| HL_6GC6_003 | 1/A/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_62869.3 | |
| HL_6GC6_004 | 1/A/137:142 | No text annotation Not in a motif group | ||
| HL_6GC6_005 | 1/A/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_6GC6_006 | 1/A/194:201 | No text annotation Not in a motif group | homologous HL_4WF9_006 HL_23481.5 | |
| HL_6GC6_007 | 1/A/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_35894.3 | |
| HL_6GC6_008 | 1/A/246:252 | No text annotation Not in a motif group | homologous HL_4WF9_008 HL_67216.5 | |
| HL_6GC6_009 | 1/A/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_68493.6 | |
| HL_6GC6_010 | 1/A/319:323 | No text annotation Not in a motif group | homologous HL_7A0S_011 HL_98557.5 | |
| HL_6GC6_011 | 1/A/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.6 | |
| HL_6GC6_012 | 1/A/382:392 | No text annotation Not in a motif group | ||
| HL_6GC6_013 | 1/A/410:417 | No text annotation Not in a motif group | homologous HL_4WF9_014 HL_32512.8 | |
| HL_6GC6_014 | 1/A/462:467 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_43074.18 | |
| HL_6GC6_015 | 1/A/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_68304.6 | |
| HL_6GC6_016 | 1/A/543:550 | No text annotation Not in a motif group | homologous HL_7RQB_017 NA | |
| HL_6GC6_017 | 1/A/566:575 | No text annotation Not in a motif group | homologous HL_7RQB_018 HL_33239.17 | |
| HL_6GC6_018 | 1/A/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_25660.1 | |
| HL_6GC6_019 | 1/A/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_43074.18 | |
| HL_6GC6_020 | 1/A/641:647 | No text annotation Not in a motif group | homologous HL_5J7L_153 HL_16419.1 | |
| HL_6GC6_023 | 1/A/779:785 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_79299.11 | |
| HL_6GC6_024 | 1/A/826:831 | No text annotation Not in a motif group | homologous HL_7RQB_025 HL_15942.5 | |
| HL_6GC6_026 | 1/A/955:962 | No text annotation Not in a motif group | homologous HL_7A0S_026 HL_43074.18 | |
| HL_6GC6_027 | 1/A/978:985 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_72451.5 | |
| HL_6GC6_028 | 1/A/1171:1178 | No text annotation Not in a motif group | ||
| HL_6GC6_029 | 1/A/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_43074.18 | |
| HL_6GC6_030 | 1/A/1281:1289 | No text annotation Not in a motif group | homologous HL_7A0S_032 HL_33239.17 | |
| HL_6GC6_031 | 1/A/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_86880.5 | |
| HL_6GC6_032 | 1/A/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_43074.18 | |
| HL_6GC6_033 | 1/A/1389:1398 | No text annotation Not in a motif group | homologous HL_4WF9_035 HL_78457.4 | |
| HL_6GC6_034 | 1/A/1451:1459 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_18722.3 | |
| HL_6GC6_035 | 1/A/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_86880.5 | |
| HL_6GC6_036 | 1/A/1533:1538 | UNCG Not in a motif group | homologous HL_5J7L_171 HL_79299.11 | |
| HL_6GC6_037 | 1/A/1565:1568 | No text annotation Not in a motif group | homologous HL_5J7L_172 HL_69353.7 | |
| HL_6GC6_038 | 1/A/1612:1619 | No text annotation Not in a motif group | homologous HL_4WF9_038 HL_66171.3 | |
| HL_6GC6_039 | 1/A/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_02361.6 | |
| HL_6GC6_041 | 1/A/1727:1733 | No text annotation Not in a motif group | ||
| HL_6GC6_042 | 1/A/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_79272.3 | |
| HL_6GC6_046 | 1/A/2027:2036 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.5 | |
| HL_6GC6_048 | 1/A/2658:2663 | GNRA Not in a motif group | geometric HL_4WF9_016 HL_43074.18 | |
| HL_6GC6_049 | 1/A/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_7A0S_064 HL_67719.1 | |
| HL_6GC6_050 | 1/A/2745:2759 | No text annotation Not in a motif group | homologous HL_7RQB_066 HL_56677.5 | |
| HL_6GC6_051 | 1/A/2796:2799 | No text annotation Not in a motif group | geometric HL_4V88_192 HL_69353.7 | |
| HL_6GC6_052 | 1/A/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_05018.6 | |
| HL_6GC6_053 | 1/A/2856:2861 | No text annotation Not in a motif group | homologous HL_7A0S_068 HL_43074.18 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6GC6_021 | No text annotation | ||
| HL_6GC6_022 | No text annotation | ||
| HL_6GC6_025 | No text annotation | ||
| HL_6GC6_040 | UNCG | ||
| HL_6GC6_043 | No text annotation | ||
| HL_6GC6_044 | No text annotation | ||
| HL_6GC6_045 | No text annotation | ||
| HL_6GC6_047 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6GC6_001 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW Not in a motif group | homologous IL_4WF9_001 IL_66414.5 | |
| IL_6GC6_002 | 1/A/36:37, 1/A/442:444 | Single bulged A Not in a motif group | homologous IL_4WF9_002 IL_80007.16 | |
| IL_6GC6_003 | 1/A/42:44, 1/A/434:437 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4WF9_003 IL_87332.1 | |
| IL_6GC6_004 | 1/A/81:85, 1/A/97:105 | No text annotation Not in a motif group | homologous IL_5J7L_248 IL_85931.1 | |
| IL_6GC6_005 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7A0S_006 IL_04346.5 | |
| IL_6GC6_006 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 IL_35110.5 | |
| IL_6GC6_007 | 1/A/269:271, 1/A/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_6GC6_008 | 1/A/274:281, 1/A/359:363 | No text annotation Not in a motif group | homologous IL_5J7L_253 IL_77870.1 | |
| IL_6GC6_009 | 1/A/292:295, 1/A/343:348 | No text annotation Not in a motif group | ||
| IL_6GC6_010 | 1/A/481:484, 1/A/496:509 | No text annotation Not in a motif group | homologous IL_5J7L_255 IL_60992.5 | |
| IL_6GC6_011 | 1/A/536:539, 1/A/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.7 | |
| IL_6GC6_012 | 1/A/564:566, 1/A/575:577 | CC cWW Not in a motif group | geometric IL_4E59_001 IL_01312.13 | |
| IL_6GC6_013 | 1/A/606:610, 1/A/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_56467.6 | |
| IL_6GC6_014 | 1/A/672:674, 1/A/806:808 | No text annotation Not in a motif group | homologous IL_7RQB_017 IL_01312.13 | |
| IL_6GC6_015 | 1/A/674:678, 1/A/799:806 | No text annotation Not in a motif group | geometric IL_7RQB_018 IL_17470.5 | |
| IL_6GC6_021 | 1/A/844:847, 1/A/933:934 | Other IL Not in a motif group | geometric IL_5J7L_267 IL_31836.1 | |
| IL_6GC6_022 | 1/A/847:848, 1/A/930:933 | Stack outside cWW Not in a motif group | homologous IL_5J7L_268 IL_37629.1 | |
| IL_6GC6_023 | 1/A/850:851, 1/A/926:928 | Single stack bend Not in a motif group | homologous IL_5J7L_269 IL_04038.4 | |
| IL_6GC6_024 | 1/A/856:862, 1/A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_5TBW_038 IL_93830.2 | |
| IL_6GC6_025 | 1/A/862:863, 1/A/913:915 | Single bulged G Not in a motif group | homologous IL_5J7L_271 IL_59137.10 | |
| IL_6GC6_026 | 1/A/993:996, 1/A/1159:1161 | No text annotation Not in a motif group | geometric IL_4YHW_001 IL_01312.13 | |
| IL_6GC6_027 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN Not in a motif group | homologous IL_4WF9_036 IL_53523.5 | |
| IL_6GC6_028 | 1/A/1004:1011, 1/A/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_15861.6 | |
| IL_6GC6_029 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U Not in a motif group | homologous IL_4WF9_038 IL_83039.11 | |
| IL_6GC6_030 | 1/A/1018:1024, 1/A/1140:1144 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.3 | |
| IL_6GC6_031 | 1/A/1024:1030, 1/A/1124:1140 | No text annotation Not in a motif group | ||
| IL_6GC6_032 | 1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_5J7L_286 IL_67621.5 | |
| IL_6GC6_033 | 1/A/1202:1206, 1/A/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_6GC6_034 | 1/A/1208:1215, 1/A/1234:1238 | Kink-turn Not in a motif group | homologous IL_7RQB_047 IL_29549.9 | |
| IL_6GC6_035 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.5 | |
| IL_6GC6_036 | 1/A/1310:1313, 1/A/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_6N5P_003 IL_70995.6 | |
| IL_6GC6_037 | 1/A/1319:1323, 1/A/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_08376.2 | |
| IL_6GC6_038 | 1/A/1351:1355, 1/A/1376:1380 | UAA/GAN Not in a motif group | homologous IL_7A0S_048 IL_34907.2 | |
| IL_6GC6_039 | 1/A/1357:1361, 1/A/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_39521.5 | |
| IL_6GC6_040 | 1/A/1415:1417, 1/A/1581:1587 | No text annotation Not in a motif group | ||
| IL_6GC6_041 | 1/A/1417:1421, 1/A/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_53523.5 | |
| IL_6GC6_042 | 1/A/1432:1435, 1/A/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_85877.10 | |
| IL_6GC6_043 | 1/A/1437:1440, 1/A/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7A0S_053 IL_08757.3 | |
| IL_6GC6_044 | 1/A/1450:1451, 1/A/1459:1461 | Single bulged U Not in a motif group | homologous IL_5J7L_298 IL_83039.11 | |
| IL_6GC6_045 | 1/A/1468:1471, 1/A/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_6GC6_046 | 1/A/1474:1479, 1/A/1512:1517 | tSH-tHW-tHS-cWW Not in a motif group | geometric IL_6DVK_004 IL_76308.3 | |
| IL_6GC6_047 | 1/A/1481:1482, 1/A/1507:1510 | No text annotation Not in a motif group | homologous IL_5J7L_301 IL_67474.3 | |
| IL_6GC6_048 | 1/A/1489:1491, 1/A/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_80007.16 | |
| IL_6GC6_049 | 1/A/1526:1530, 1/A/1541:1546 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.1 | |
| IL_6GC6_050 | 1/A/1651:1656, 1/A/2004:2006 | No text annotation Not in a motif group | homologous IL_7A0S_059 IL_12566.2 | |
| IL_6GC6_051 | 1/A/1663:1665, 1/A/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_4WF9_063 IL_54997.5 | |
| IL_6GC6_052 | 1/A/1666:1669, 1/A/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_7RQB_066 IL_80663.10 | |
| IL_6GC6_053 | 1/A/1669:1674, 1/A/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_4WF9_065 IL_01312.13 | |
| IL_6GC6_055 | 1/A/1712:1718, 1/A/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.2 | |
| IL_6GC6_056 | 1/A/1719:1724, 1/A/1736:1741 | No text annotation Not in a motif group | geometric IL_5TBW_026 IL_19954.1 | |
| IL_6GC6_059 | 1/A/2050:2052, 1/A/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_80663.10 | |
| IL_6GC6_060 | 1/A/2053:2057, 1/A/2611:2616 | No text annotation Not in a motif group | ||
| IL_6GC6_061 | 1/A/2636:2640, 1/A/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_7RQB_102 IL_34907.2 | |
| IL_6GC6_062 | 1/A/2652:2658, 1/A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | homologous IL_7A0S_094 IL_35110.5 | |
| IL_6GC6_063 | 1/A/2680:2684, 1/A/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.4 | |
| IL_6GC6_064 | 1/A/2687:2691, 1/A/2718:2722 | No text annotation Not in a motif group | homologous IL_5J7L_348 IL_08296.3 | |
| IL_6GC6_065 | 1/A/2695:2696, 1/A/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_4WF9_103 IL_13730.12 | |
| IL_6GC6_066 | 1/A/2737:2742, 1/A/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.4 | |
| IL_6GC6_067 | 1/A/2795:2796, 1/A/2799:2801 | Single bulged A Not in a motif group | geometric IL_5J7L_261 IL_80007.16 | |
| IL_6GC6_068 | 1/A/2806:2811, 1/A/2889:2892 | No text annotation Not in a motif group | geometric IL_5J7L_351 IL_82988.1 | |
| IL_6GC6_069 | 1/A/2838:2839, 1/A/2878:2880 | Major groove intercalation Not in a motif group | homologous IL_5J7L_352 IL_80663.10 | |
| IL_6GC6_070 | 1/A/2843:2846, 1/A/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.1 | |
| IL_6GC6_071 | 1/A/2847:2852, 1/A/2865:2869 | No text annotation Not in a motif group | homologous IL_7RQB_110 IL_83162.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6GC6_016 | Single bulged A | ||
| IL_6GC6_017 | Single bulged G | ||
| IL_6GC6_018 | Triple sheared | ||
| IL_6GC6_019 | No text annotation | ||
| IL_6GC6_020 | Multiple bulged bases | ||
| IL_6GC6_054 | tSH-tSH-tHH-tHS | ||
| IL_6GC6_057 | Single stack bend | ||
| IL_6GC6_058 | Kink-turn related |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6GC6_001 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_6GC6_004 | 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_6GC6_005 | 1/A/1306:1310, 1/A/1604:1611, 1/A/1620:1622 | No text annotation Not in a motif group | ||
| J3_6GC6_006 | 1/A/1344:1349, 1/A/1382:1385, 1/A/1402:1403 | No text annotation Not in a motif group | homologous J3_5J7L_043 NA | |
| J3_6GC6_007 | 1/A/2789:2791, 1/A/2805:2806, 1/A/2892:2894 | No text annotation Not in a motif group | homologous J3_5J7L_047 NA | |
| J3_6GC6_008 | 1/A/2812:2815, 1/A/2831:2836, 1/A/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6GC6_002 | No text annotation | ||
| J3_6GC6_003 | No text annotation |
Coloring options: