6GC6 | Motifs

Valid loops

#	loop id	location	motif
1	IL_6GC6_001 ➜	1/A/24:30,1/A/510:516	NA
2	IL_6GC6_002 ➜	1/A/36:37,1/A/442:444	NA
3	IL_6GC6_003 ➜	1/A/42:44,1/A/434:437	NA
4	IL_6GC6_004 ➜	1/A/81:85,1/A/97:105	NA
5	IL_6GC6_005 ➜	1/A/188:194,1/A/201:208	NA
6	IL_6GC6_006 ➜	1/A/239:245,1/A/253:258	NA
7	IL_6GC6_007 ➜	1/A/269:271,1/A/366:370	NA
8	IL_6GC6_008 ➜	1/A/274:281,1/A/359:363	NA
9	IL_6GC6_009 ➜	1/A/292:295,1/A/343:348	NA
10	IL_6GC6_010 ➜	1/A/481:484,1/A/496:509	NA
11	IL_6GC6_011 ➜	1/A/536:539,1/A/554:557	NA
12	IL_6GC6_012 ➜	1/A/564:566,1/A/575:577	NA
13	IL_6GC6_013 ➜	1/A/606:610,1/A/618:622	NA
14	IL_6GC6_014 ➜	1/A/672:674,1/A/806:808	NA
15	IL_6GC6_015 ➜	1/A/674:678,1/A/799:806	NA
16	IL_6GC6_021 ➜	1/A/844:847,1/A/933:934	NA
17	IL_6GC6_022 ➜	1/A/847:848,1/A/930:933	NA
18	IL_6GC6_023 ➜	1/A/850:851,1/A/926:928	NA
19	IL_6GC6_024 ➜	1/A/856:862,1/A/915:921	NA
20	IL_6GC6_025 ➜	1/A/862:863,1/A/913:915	NA
21	IL_6GC6_026 ➜	1/A/993:996,1/A/1159:1161	NA
22	IL_6GC6_027 ➜	1/A/998:1002,1/A/1153:1157	NA
23	IL_6GC6_028 ➜	1/A/1004:1011,1/A/1150:1151	NA
24	IL_6GC6_029 ➜	1/A/1011:1013,1/A/1149:1150	NA
25	IL_6GC6_030 ➜	1/A/1018:1024,1/A/1140:1144	NA
26	IL_6GC6_031 ➜	1/A/1024:1030,1/A/1124:1140	NA
27	IL_6GC6_032 ➜	1/A/1196:1198,1/A/1247:1250	NA
28	IL_6GC6_033 ➜	1/A/1202:1206,1/A/1240:1243	NA
29	IL_6GC6_034 ➜	1/A/1208:1215,1/A/1234:1238	NA
30	IL_6GC6_035 ➜	1/A/1262:1269,1/A/2011:2017	NA
31	IL_6GC6_036 ➜	1/A/1310:1313,1/A/1603:1604	NA
32	IL_6GC6_037 ➜	1/A/1319:1323,1/A/1331:1333	NA
33	IL_6GC6_038 ➜	1/A/1351:1355,1/A/1376:1380	NA
34	IL_6GC6_039 ➜	1/A/1357:1361,1/A/1370:1374	NA
35	IL_6GC6_040 ➜	1/A/1415:1417,1/A/1581:1587	NA
36	IL_6GC6_041 ➜	1/A/1417:1421,1/A/1577:1581	NA
37	IL_6GC6_042 ➜	1/A/1432:1435,1/A/1557:1561	NA
38	IL_6GC6_043 ➜	1/A/1437:1440,1/A/1551:1555	NA
39	IL_6GC6_044 ➜	1/A/1450:1451,1/A/1459:1461	NA
40	IL_6GC6_045 ➜	1/A/1468:1471,1/A/1520:1524	NA
41	IL_6GC6_046 ➜	1/A/1474:1479,1/A/1512:1517	NA
42	IL_6GC6_047 ➜	1/A/1481:1482,1/A/1507:1510	NA
43	IL_6GC6_048 ➜	1/A/1489:1491,1/A/1499:1500	NA
44	IL_6GC6_049 ➜	1/A/1526:1530,1/A/1541:1546	NA
45	IL_6GC6_050 ➜	1/A/1651:1656,1/A/2004:2006	NA
46	IL_6GC6_051 ➜	1/A/1663:1665,1/A/1995:1997	NA
47	IL_6GC6_052 ➜	1/A/1666:1669,1/A/1993:1994	NA
48	IL_6GC6_053 ➜	1/A/1669:1674,1/A/1990:1993	NA
49	IL_6GC6_055 ➜	1/A/1712:1718,1/A/1742:1746	NA
50	IL_6GC6_056 ➜	1/A/1719:1724,1/A/1736:1741	NA
51	IL_6GC6_059 ➜	1/A/2050:2052,1/A/2617:2618	NA
52	IL_6GC6_060 ➜	1/A/2053:2057,1/A/2611:2616	NA
53	IL_6GC6_061 ➜	1/A/2636:2640,1/A/2774:2782	NA
54	IL_6GC6_062 ➜	1/A/2652:2658,1/A/2663:2668	NA
55	IL_6GC6_063 ➜	1/A/2680:2684,1/A/2725:2727	NA
56	IL_6GC6_064 ➜	1/A/2687:2691,1/A/2718:2722	NA
57	IL_6GC6_065 ➜	1/A/2695:2696,1/A/2711:2714	NA
58	IL_6GC6_066 ➜	1/A/2737:2742,1/A/2762:2767	NA
59	IL_6GC6_067 ➜	1/A/2795:2796,1/A/2799:2801	NA
60	IL_6GC6_068 ➜	1/A/2806:2811,1/A/2889:2892	NA
61	IL_6GC6_069 ➜	1/A/2838:2839,1/A/2878:2880	NA
62	IL_6GC6_070 ➜	1/A/2843:2846,1/A/2870:2874	NA
63	IL_6GC6_071 ➜	1/A/2847:2852,1/A/2865:2869	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_6GC6_016 ➜	missing nts	697, 698, 763, 764, 765
2	IL_6GC6_017 ➜	missing nts	702, 703, 728, 729, 730
3	IL_6GC6_018 ➜	missing nts	703, 704, 705, 706, 707, 724, 725, 726, 727, 728
4	IL_6GC6_019 ➜	missing nts	737, 738, 739, 740, 757, 758, 759
5	IL_6GC6_020 ➜	missing nts	775, 776, 777, 787, 788, 789, 790, 791
6	IL_6GC6_054 ➜	missing nts	1686, 1687, 1688, 1689, 1690, 1691, 1696, 1697, 1698, 1699, 1700, 1701, 1702
7	IL_6GC6_057 ➜	missing nts	1776, 1777, 1778, 1787, 1788
8	IL_6GC6_058 ➜	missing nts	1798, 1799, 1800, 1801, 1802, 1803, 1804, 1813, 1814, 1815, 1816, 1817, 1818, 1819, 1820, 1821

Valid loops

#	loop id	location	motif
1	HL_6GC6_001 ➜	1/A/59:68	NA
2	HL_6GC6_002 ➜	1/A/87:95	NA
3	HL_6GC6_003 ➜	1/A/123:128	NA
4	HL_6GC6_004 ➜	1/A/137:142	NA
5	HL_6GC6_005 ➜	1/A/158:168	NA
6	HL_6GC6_006 ➜	1/A/194:201	NA
7	HL_6GC6_007 ➜	1/A/225:230	NA
8	HL_6GC6_008 ➜	1/A/246:252	NA
9	HL_6GC6_009 ➜	1/A/305:312	NA
10	HL_6GC6_010 ➜	1/A/319:323	NA
11	HL_6GC6_011 ➜	1/A/327:335	NA
12	HL_6GC6_012 ➜	1/A/382:392	NA
13	HL_6GC6_013 ➜	1/A/410:417	NA
14	HL_6GC6_014 ➜	1/A/462:467	NA
15	HL_6GC6_015 ➜	1/A/487:493	NA
16	HL_6GC6_016 ➜	1/A/543:550	NA
17	HL_6GC6_017 ➜	1/A/566:575	NA
18	HL_6GC6_018 ➜	1/A/611:617	NA
19	HL_6GC6_019 ➜	1/A/629:634	NA
20	HL_6GC6_020 ➜	1/A/641:647	NA
21	HL_6GC6_023 ➜	1/A/779:785	NA
22	HL_6GC6_024 ➜	1/A/826:831	NA
23	HL_6GC6_026 ➜	1/A/955:962	NA
24	HL_6GC6_027 ➜	1/A/978:985	NA
25	HL_6GC6_028 ➜	1/A/1171:1178	NA
26	HL_6GC6_029 ➜	1/A/1222:1227	NA
27	HL_6GC6_030 ➜	1/A/1281:1289	NA
28	HL_6GC6_031 ➜	1/A/1324:1330	NA
29	HL_6GC6_032 ➜	1/A/1363:1368	NA
30	HL_6GC6_033 ➜	1/A/1389:1398	NA
31	HL_6GC6_034 ➜	1/A/1451:1459	NA
32	HL_6GC6_035 ➜	1/A/1492:1498	NA
33	HL_6GC6_036 ➜	1/A/1533:1538	NA
34	HL_6GC6_037 ➜	1/A/1565:1568	NA
35	HL_6GC6_038 ➜	1/A/1612:1619	NA
36	HL_6GC6_039 ➜	1/A/1630:1636	NA
37	HL_6GC6_041 ➜	1/A/1727:1733	NA
38	HL_6GC6_042 ➜	1/A/1752:1756	NA
39	HL_6GC6_046 ➜	1/A/2027:2036	NA
40	HL_6GC6_048 ➜	1/A/2658:2663	NA
41	HL_6GC6_049 ➜	1/A/2701:2706	NA
42	HL_6GC6_050 ➜	1/A/2745:2759	NA
43	HL_6GC6_051 ➜	1/A/2796:2799	NA
44	HL_6GC6_052 ➜	1/A/2819:2827	NA
45	HL_6GC6_053 ➜	1/A/2856:2861	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_6GC6_021 ➜	missing nts	712, 713, 714, 715, 716, 717, 718, 719
2	HL_6GC6_022 ➜	missing nts	744, 745, 746, 747, 748, 749, 750, 751, 752, 753
3	HL_6GC6_025 ➜	missing nts	864, 865, 866, 867, 908, 909, 910, 911, 912
4	HL_6GC6_040 ➜	missing nts	1691, 1692, 1693, 1694, 1695, 1696
5	HL_6GC6_043 ➜	missing nts	1778, 1779, 1780, 1781, 1782, 1783, 1784, 1785, 1786, 1787
6	HL_6GC6_044 ➜	missing nts	1806, 1807, 1808, 1809, 1810, 1811
7	HL_6GC6_045 ➜	missing nts	1833, 1834, 1835, 1968, 1969, 1970, 1971, 1972
8	HL_6GC6_047 ➜	missing nts	2057, 2058, 2059, 2060, 2609, 2610, 2611

Valid loops

#	loop id	location	motif
1	J3_6GC6_001 ➜	1/A/56:57,1/A/70:76,1/A/110:114	NA
2	J3_6GC6_004 ➜	1/A/1298:1303,1/A/1625:1627,1/A/1639:1642	NA
3	J3_6GC6_005 ➜	1/A/1306:1310,1/A/1604:1611,1/A/1620:1622	NA
4	J3_6GC6_006 ➜	1/A/1344:1349,1/A/1382:1385,1/A/1402:1403	NA
5	J3_6GC6_007 ➜	1/A/2789:2791,1/A/2805:2806,1/A/2892:2894	NA
6	J3_6GC6_008 ➜	1/A/2812:2815,1/A/2831:2836,1/A/2882:2888	NA

Problematic loops

#	loop id	Problem	Sequence
1	J3_6GC6_002 ➜	missing nts	683, 684, 685, 686, 687, 688, 689, 773, 774, 775, 791, 792, 793, 794
2	J3_6GC6_003 ➜	missing nts	698, 699, 700, 732, 733, 734, 735, 736, 760, 761, 762, 763