6VYQ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6VYQ_001 | 1/A/13:22 | No text annotation | ||
| HL_6VYQ_002 | 1/A/31:39 | tRNA anticodon loop | homologous HL_5UD5_002 HL_77082.1 | |
| HL_6VYQ_003 | 1/A/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5HR6_003 HL_28252.6 | |
| HL_6VYQ_004 | 1/B/13:22 | No text annotation | ||
| HL_6VYQ_005 | 1/B/29:41 | No text annotation | homologous HL_7OSM_128 NA | |
| HL_6VYQ_006 | 1/B/53:61 | T-loop with 2 stacked bulged bases | homologous HL_5HR6_003 HL_28252.6 | |
| HL_6VYQ_007 | 1/D/12:22 | No text annotation | homologous HL_4LFB_001 HL_89881.5 | |
| HL_6VYQ_008 | 1/D/80:89 | No text annotation | geometric HL_5NFV_001 HL_69752.2 | |
| HL_6VYQ_009 | 1/D/158:163 | GNRA | homologous HL_5J7L_003 HL_37824.7 | |
| HL_6VYQ_010 | 1/D/186:191 | GNRA | homologous HL_5J7L_004 HL_37824.7 | |
| HL_6VYQ_109 | 1/D/203:214 | No text annotation | ||
| HL_6VYQ_011 | 1/D/207:212 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_6VYQ_012 | 1/D/259:267 | GNRA related | homologous HL_5J7L_006 HL_84299.4 | |
| HL_6VYQ_013 | 1/D/296:301 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_6VYQ_014 | 1/D/320:333 | No text annotation | homologous HL_5J7L_008 HL_81205.3 | |
| HL_6VYQ_015 | 1/D/342:347 | UNCG | homologous HL_4LFB_009 HL_34617.5 | |
| HL_6VYQ_016 | 1/D/379:384 | GNRA | homologous HL_5J7L_010 HL_37824.7 | |
| HL_6VYQ_017 | 1/D/419:424 | UNCG | homologous HL_5J7L_011 HL_34617.5 | |
| HL_6VYQ_018 | 1/D/462:470 | GNRA related | homologous HL_5J7L_012 HL_81538.2 | |
| HL_6VYQ_020 | 1/D/617:623 | No text annotation | homologous HL_5J7L_014 HL_10453.3 | |
| HL_6VYQ_021 | 1/D/689:698 | No text annotation | homologous HL_5J7L_015 HL_75293.5 | |
| HL_6VYQ_022 | 1/D/726:731 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
| HL_6VYQ_023 | 1/D/786:796 | No text annotation | homologous HL_5J7L_017 HL_75293.5 | |
| HL_6VYQ_024 | 1/D/840:846 | No text annotation | ||
| HL_6VYQ_025 | 1/D/862:867 | GNRA | homologous HL_5J7L_019 HL_37824.7 | |
| HL_6VYQ_026 | 1/D/897:902 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_6VYQ_028 | 1/D/1012:1017 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_6VYQ_029 | 1/D/1076:1081 | GNRA | homologous HL_5J7L_023 HL_37824.7 | |
| HL_6VYQ_030 | 1/D/1089:1096 | T-loop related | homologous HL_4LFB_025 HL_77436.5 | |
| HL_6VYQ_031 | 1/D/1134:1140 | No text annotation | homologous HL_5J7L_025 HL_87954.2 | |
| HL_6VYQ_032 | 1/D/1165:1171 | GNRA | homologous HL_4LFB_027 HL_37824.7 | |
| HL_6VYQ_033 | 1/D/1265:1270 | GNRA | homologous HL_5J7L_027 HL_37824.7 | |
| HL_6VYQ_034 | 1/D/1314:1323 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_6VYQ_035 | 1/D/1356:1366 | No text annotation | homologous HL_4LFB_030 HL_06226.4 | |
| HL_6VYQ_036 | 1/D/1449:1454 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_6VYQ_038 | 1/a/59:68 | No text annotation | homologous HL_5J7L_134 HL_35677.3 | |
| HL_6VYQ_039 | 1/a/87:95 | No text annotation | homologous HL_5J7L_135 HL_80241.1 | |
| HL_6VYQ_040 | 1/a/123:128 | No text annotation | homologous HL_5J7L_136 HL_82710.2 | |
| HL_6VYQ_041 | 1/a/137:142 | UNCG | geometric HL_5J7L_030 HL_34617.5 | |
| HL_6VYQ_042 | 1/a/158:168 | No text annotation | homologous HL_5J7L_138 HL_68257.1 | |
| HL_6VYQ_043 | 1/a/194:201 | No text annotation | homologous HL_5J7L_139 HL_30068.2 | |
| HL_6VYQ_044 | 1/a/225:230 | No text annotation | homologous HL_5J7L_140 HL_62934.1 | |
| HL_6VYQ_045 | 1/a/246:252 | No text annotation | homologous HL_5J7L_141 HL_37369.2 | |
| HL_6VYQ_046 | 1/a/305:312 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 HL_01609.3 | |
| HL_6VYQ_047 | 1/a/319:323 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
| HL_6VYQ_048 | 1/a/327:335 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
| HL_6VYQ_049 | 1/a/382:392 | No text annotation | homologous HL_5J7L_145 HL_91503.7 | |
| HL_6VYQ_050 | 1/a/410:417 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.3 | |
| HL_6VYQ_051 | 1/a/462:467 | GNRA | homologous HL_5J7L_147 HL_37824.7 | |
| HL_6VYQ_052 | 1/a/487:493 | GNRA | homologous HL_5J7L_148 HL_37824.7 | |
| HL_6VYQ_053 | 1/a/544:549 | No text annotation | homologous HL_7RQB_017 NA | |
| HL_6VYQ_054 | 1/a/566:575 | T-loop with 2 stacked bulged bases | geometric HL_5J7L_150 HL_28252.6 | |
| HL_6VYQ_055 | 1/a/611:617 | No text annotation | homologous HL_5J7L_151 HL_80922.2 | |
| HL_6VYQ_056 | 1/a/629:634 | GNRA | homologous HL_5J7L_152 HL_37824.7 | |
| HL_6VYQ_057 | 1/a/641:647 | No text annotation | homologous HL_5J7L_153 HL_13529.1 | |
| HL_6VYQ_058 | 1/a/712:719 | GNRA wlth tandem sheared | homologous HL_5J7L_154 HL_81538.2 | |
| HL_6VYQ_060 | 1/a/779:785 | No text annotation | homologous HL_5J7L_156 HL_87954.2 | |
| HL_6VYQ_061 | 1/a/826:831 | No text annotation | homologous HL_5J7L_157 HL_55195.3 | |
| HL_6VYQ_111 | 1/a/883:893 | No text annotation | ||
| HL_6VYQ_062 | 1/a/885:891 | No text annotation | geometric HL_6DTD_001 HL_48417.5 | |
| HL_6VYQ_064 | 1/a/978:985 | No text annotation | homologous HL_5J7L_160 HL_42998.2 | |
| HL_6VYQ_065 | 1/a/1065:1073 | No text annotation | ||
| HL_6VYQ_066 | 1/a/1092:1099 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_6VYQ_067 | 1/a/1172:1177 | No text annotation | ||
| HL_6VYQ_068 | 1/a/1222:1227 | GNRA | homologous HL_5J7L_164 HL_37824.7 | |
| HL_6VYQ_069 | 1/a/1281:1289 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_165 HL_28252.6 | |
| HL_6VYQ_070 | 1/a/1324:1330 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 HL_57176.2 | |
| HL_6VYQ_071 | 1/a/1363:1368 | GNRA | homologous HL_5J7L_167 HL_37824.7 | |
| HL_6VYQ_072 | 1/a/1389:1398 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
| HL_6VYQ_073 | 1/a/1451:1459 | Mini UNCG with extended bulge | homologous HL_5J7L_169 HL_22622.1 | |
| HL_6VYQ_074 | 1/a/1492:1498 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 HL_57176.2 | |
| HL_6VYQ_075 | 1/a/1533:1538 | UNCG | homologous HL_5J7L_171 HL_34617.5 | |
| HL_6VYQ_076 | 1/a/1565:1568 | Mini UNCG | homologous HL_5J7L_172 HL_48778.2 | |
| HL_6VYQ_078 | 1/a/1630:1636 | GNRA | homologous HL_5J7L_174 HL_37824.7 | |
| HL_6VYQ_079 | 1/a/1691:1696 | UNCG | geometric HL_5J7L_175 HL_34617.5 | |
| HL_6VYQ_112 | 1/a/1727:1733 | No text annotation | homologous HL_5J7L_214 HL_08100.1 | |
| HL_6VYQ_080 | 1/a/1728:1731 | No text annotation | geometric HL_5J7L_176 HL_32346.3 | |
| HL_6VYQ_081 | 1/a/1752:1756 | No text annotation | homologous HL_5J7L_177 HL_80709.3 | |
| HL_6VYQ_082 | 1/a/1777:1787 | No text annotation | homologous HL_5J7L_178 HL_01962.2 | |
| HL_6VYQ_083 | 1/a/1806:1811 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
| HL_6VYQ_084 | 1/a/1868:1873 | GNRA variation | homologous HL_5J7L_180 HL_37824.7 | |
| HL_6VYQ_086 | 1/a/1949:1957 | No text annotation | homologous HL_5J7L_182 HL_20167.2 | |
| HL_6VYQ_088 | 1/a/2143:2148 | No text annotation | homologous HL_5J7L_184 NA | |
| HL_6VYQ_089 | 1/a/2209:2215 | No text annotation | homologous HL_5J7L_185 HL_49922.4 | |
| HL_6VYQ_091 | 1/a/2264:2276 | No text annotation | homologous HL_5J7L_187 HL_91939.2 | |
| HL_6VYQ_114 | 1/a/2304:2312 | No text annotation | homologous HL_5J7L_219 HL_50860.2 | |
| HL_6VYQ_093 | 1/a/2324:2331 | Pseudoknot geometry | homologous HL_5J7L_189 HL_93324.4 | |
| HL_6VYQ_094 | 1/a/2356:2361 | GNRA | homologous HL_5J7L_190 HL_37824.7 | |
| HL_6VYQ_095 | 1/a/2374:2379 | GNRA | homologous HL_5J7L_191 HL_37824.7 | |
| HL_6VYQ_096 | 1/a/2404:2413 | No text annotation | homologous HL_5J7L_192 HL_53454.2 | |
| HL_6VYQ_097 | 1/a/2471:2479 | No text annotation | homologous HL_4WF9_056 HL_32735.2 | |
| HL_6VYQ_098 | 1/a/2528:2535 | No text annotation | homologous HL_5J7L_194 HL_31585.3 | |
| HL_6VYQ_100 | 1/a/2594:2599 | GNRA | homologous HL_5J7L_196 HL_37824.7 | |
| HL_6VYQ_101 | 1/a/2658:2663 | GNRA | geometric HL_4V9F_066 HL_37824.7 | |
| HL_6VYQ_102 | 1/a/2701:2706 | Ribsomal LSU H95 | homologous HL_5J7L_198 HL_65794.5 | |
| HL_6VYQ_103 | 1/a/2745:2759 | No text annotation | homologous HL_4WF9_062 HL_74055.2 | |
| HL_6VYQ_115 | 1/a/2795:2801 | Other HL | homologous HL_5J7L_200 HL_08100.1 | |
| HL_6VYQ_105 | 1/a/2819:2827 | No text annotation | homologous HL_5J7L_201 HL_64690.6 | |
| HL_6VYQ_106 | 1/a/2856:2861 | GNRA | homologous HL_5J7L_202 HL_37824.7 | |
| HL_6VYQ_113 | 1/d/34:48 | No text annotation | homologous HL_5J7L_215 HL_97756.2 | |
| HL_6VYQ_107 | 1/d/38:44 | No text annotation | homologous HL_5J7L_203 HL_47787.2 | |
| HL_6VYQ_108 | 1/d/86:90 | Mini UNCG | homologous HL_5J7L_204 HL_48778.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6VYQ_019 | No text annotation | ||
| HL_6VYQ_027 | No text annotation | ||
| HL_6VYQ_110 | No text annotation | ||
| HL_6VYQ_037 | GNRA | ||
| HL_6VYQ_059 | No text annotation | ||
| HL_6VYQ_063 | No text annotation | ||
| HL_6VYQ_077 | No text annotation | ||
| HL_6VYQ_085 | No text annotation | ||
| HL_6VYQ_087 | No text annotation | ||
| HL_6VYQ_090 | No text annotation | ||
| HL_6VYQ_092 | No text annotation | ||
| HL_6VYQ_099 | No text annotation | ||
| HL_6VYQ_104 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6VYQ_001 | 1/D/30:32, 1/D/552:553 | Single bulged G | homologous IL_4LFB_001 IL_00225.13 | |
| IL_6VYQ_002 | 1/D/44:45, 1/D/396:398 | Single bulged A | homologous IL_5J7L_002 IL_31462.5 | |
| IL_6VYQ_003 | 1/D/47:52, 1/D/359:361 | No text annotation | homologous IL_5J7L_003 IL_14177.2 | |
| IL_6VYQ_004 | 1/D/54:56, 1/D/356:357 | Minor groove platform | homologous IL_4LFB_004 IL_51454.2 | |
| IL_6VYQ_005 | 1/D/63:66, 1/D/103:104 | Multiple bulged bases | homologous IL_4LFB_005 IL_82107.4 | |
| IL_6VYQ_006 | 1/D/67:69, 1/D/99:102 | Minor groove platform with extra cWW | homologous IL_5J7L_006 IL_90351.1 | |
| IL_6VYQ_007 | 1/D/70:73, 1/D/97:98 | Minor groove platform | homologous IL_5J7L_007 IL_15052.4 | |
| IL_6VYQ_189 | 1/D/75:76, 1/D/93:95 | Single bulged G | homologous IL_5J7L_395 IL_00225.13 | |
| IL_6VYQ_009 | 1/D/128:131, 1/D/231:233 | Isolated non-canonical cWW pair | homologous IL_5J7L_009 IL_57744.1 | |
| IL_6VYQ_010 | 1/D/132:136, 1/D/227:230 | Minor groove platform related | homologous IL_5J7L_010 IL_64231.5 | |
| IL_6VYQ_011 | 1/D/144:146, 1/D/176:178 | Isolated cWH basepair | homologous IL_5J7L_011 IL_10167.5 | |
| IL_6VYQ_190 | 1/D/144:153, 1/D/168:178 | No text annotation | ||
| IL_6VYQ_012 | 1/D/147:153, 1/D/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 IL_80604.6 | |
| IL_6VYQ_013 | 1/D/203:207, 1/D/212:214 | No text annotation | homologous IL_5J7L_013 IL_66997.2 | |
| IL_6VYQ_014 | 1/D/242:247, 1/D/277:284 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 IL_46174.3 | |
| IL_6VYQ_015 | 1/D/249:252, 1/D/274:275 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_6VYQ_016 | 1/D/292:293, 1/D/304:308 | C-loop | homologous IL_4LFB_013 IL_03109.3 | |
| IL_6VYQ_017 | 1/D/367:369, 1/D/392:393 | Single bulged U | homologous IL_4LFB_014 IL_89505.4 | |
| IL_6VYQ_018 | 1/D/371:375, 1/D/389:390 | C-loop | homologous IL_5J7L_018 IL_03109.3 | |
| IL_6VYQ_019 | 1/D/375:376, 1/D/387:389 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_6VYQ_020 | 1/D/409:416, 1/D/427:433 | No text annotation | geometric IL_6CZR_359 NA | |
| IL_6VYQ_021 | 1/D/440:442, 1/D/492:497 | No text annotation | homologous IL_5J7L_021 IL_33323.1 | |
| IL_6VYQ_022 | 1/D/446:450, 1/D/483:488 | tSH-tHW-tWW | geometric IL_5J7L_022 IL_88269.4 | |
| IL_6VYQ_023 | 1/D/450:455, 1/D/477:483 | No text annotation | homologous IL_5J7L_023 IL_70801.1 | |
| IL_6VYQ_024 | 1/D/504:511, 1/D/540:541 | SSU/LSU pseudoknot | homologous IL_5J7L_024 IL_41203.4 | |
| IL_6VYQ_026 | 1/D/569:575, 1/D/880:881 | No text annotation | homologous IL_5J7L_026 IL_38186.6 | |
| IL_6VYQ_027 | 1/D/580:584, 1/D/757:761 | tSH-tHW-tHS | homologous IL_5J7L_027 IL_17136.7 | |
| IL_6VYQ_028 | 1/D/594:596, 1/D/644:645 | Major groove platform | homologous IL_5J7L_028 IL_48076.6 | |
| IL_6VYQ_029 | 1/D/597:598, 1/D/640:643 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 IL_68140.4 | |
| IL_6VYQ_030 | 1/D/605:612, 1/D/628:633 | No text annotation | homologous IL_5J7L_030 IL_78349.3 | |
| IL_6VYQ_031 | 1/D/654:655, 1/D/751:754 | Major groove platform; stack outside cWW | homologous IL_5J7L_031 IL_50694.7 | |
| IL_6VYQ_032 | 1/D/658:659, 1/D/746:748 | Single stack bend | homologous IL_5J7L_032 IL_26793.1 | |
| IL_6VYQ_033 | 1/D/662:666, 1/D/740:743 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 IL_85033.2 | |
| IL_6VYQ_034 | 1/D/673:678, 1/D/712:717 | No text annotation | homologous IL_5J7L_034 NA | |
| IL_6VYQ_035 | 1/D/684:688, 1/D/699:706 | Kink-turn | homologous IL_5J7L_035 IL_01488.3 | |
| IL_6VYQ_036 | 1/D/774:778, 1/D/804:805 | Left turn | homologous IL_4LFB_032 IL_29346.2 | |
| IL_6VYQ_037 | 1/D/779:783, 1/D/799:803 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
| IL_6VYQ_038 | 1/D/887:894, 1/D/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_5J7L_038 IL_41756.4 | |
| IL_6VYQ_039 | 1/D/922:923, 1/D/1393:1395 | Single bulged A | homologous IL_5J7L_039 IL_31462.5 | |
| IL_6VYQ_040 | 1/D/925:927, 1/D/1390:1391 | Single bulged G | homologous IL_5J7L_040 IL_00225.13 | |
| IL_6VYQ_041 | 1/D/933:935, 1/D/1380:1384 | Minor groove platform | homologous IL_5J7L_041 IL_47078.3 | |
| IL_6VYQ_042 | 1/D/953:954, 1/D/1226:1228 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_6VYQ_043 | 1/D/993:997, 1/D/1044:1045 | Minor groove platform | geometric IL_5J7L_043 IL_47078.3 | |
| IL_6VYQ_201 | 1/D/998:999, 1/D/1041:1043 | Single stack bend | homologous IL_5J7L_044 IL_26793.1 | |
| IL_6VYQ_045 | 1/D/1003:1006, 1/D/1023:1037 | No text annotation | ||
| IL_6VYQ_046 | 1/D/1048:1050, 1/D/1208:1209 | Single bulged U | geometric IL_5J7L_046 IL_89505.4 | |
| IL_6VYQ_048 | 1/D/1052:1056, 1/D/1204:1206 | Isolated cWS basepair | geometric IL_4LFB_044 IL_76319.5 | |
| IL_6VYQ_049 | 1/D/1057:1058, 1/D/1199:1203 | Minor groove platform | homologous IL_5J7L_048 IL_95583.2 | |
| IL_6VYQ_050 | 1/D/1060:1061, 1/D/1195:1197 | Single bulged U | homologous IL_4LFB_046 IL_89505.4 | |
| IL_6VYQ_051 | 1/D/1061:1063, 1/D/1193:1195 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_28037.2 | |
| IL_6VYQ_052 | 1/D/1124:1128, 1/D/1144:1149 | No text annotation | homologous IL_5J7L_051 IL_06691.1 | |
| IL_6VYQ_053 | 1/D/1129:1132, 1/D/1142:1143 | Minor groove platform | homologous IL_5J7L_052 IL_15052.4 | |
| IL_6VYQ_054 | 1/D/1158:1161, 1/D/1175:1181 | No text annotation | homologous IL_5J7L_053 IL_42032.1 | |
| IL_6VYQ_055 | 1/D/1247:1253, 1/D/1284:1290 | No text annotation | homologous IL_5J7L_054 IL_09129.2 | |
| IL_6VYQ_056 | 1/D/1255:1258, 1/D/1277:1282 | 180 degree turn | homologous IL_4LFB_052 IL_11344.2 | |
| IL_6VYQ_191 | 1/D/1255:1263, 1/D/1272:1282 | No text annotation | ||
| IL_6VYQ_057 | 1/D/1259:1263, 1/D/1272:1276 | Triple sheared | homologous IL_5J7L_056 IL_17948.2 | |
| IL_6VYQ_058 | 1/D/1303:1308, 1/D/1329:1334 | No text annotation | homologous IL_5J7L_057 IL_85536.2 | |
| IL_6VYQ_059 | 1/D/1399:1401, 1/D/1501:1504 | No text annotation | homologous IL_5J7L_058 IL_61438.4 | |
| IL_6VYQ_062 | 1/D/1412:1414, 1/D/1486:1488 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 IL_87907.2 | |
| IL_6VYQ_063 | 1/D/1416:1419, 1/D/1481:1484 | Double sheared | homologous IL_5J7L_062 IL_09705.15 | |
| IL_6VYQ_064 | 1/D/1430:1435, 1/D/1466:1470 | Triple sheared related | homologous IL_5J7L_063 IL_80231.1 | |
| IL_6VYQ_065 | 1/D/1440:1442, 1/D/1460:1461 | Single bulged A | homologous IL_5J7L_064 IL_31462.5 | |
| IL_6VYQ_066 | 1/D/1445:1448, 1/D/1455:1457 | No text annotation | homologous IL_5J7L_065 IL_31531.3 | |
| IL_6VYQ_067 | 1/a/24:30, 1/a/510:516 | Triple sheared with non-canonical cWW | geometric IL_5J7L_245 IL_04021.2 | |
| IL_6VYQ_068 | 1/a/36:37, 1/a/442:444 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_6VYQ_069 | 1/a/43:44, 1/a/434:436 | Minor groove platform | homologous IL_5J7L_247 IL_51454.2 | |
| IL_6VYQ_070 | 1/a/81:85, 1/a/97:105 | No text annotation | homologous IL_5J7L_248 IL_37015.1 | |
| IL_6VYQ_071 | 1/a/183:184, 1/a/212:214 | Single stack bend | homologous IL_4WF9_007 IL_90729.1 | |
| IL_6VYQ_072 | 1/a/188:194, 1/a/201:208 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5J7L_250 IL_04346.10 | |
| IL_6VYQ_073 | 1/a/239:245, 1/a/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_5J7L_251 IL_26307.2 | |
| IL_6VYQ_074 | 1/a/269:271, 1/a/366:370 | No text annotation | homologous IL_5J7L_252 IL_47972.1 | |
| IL_6VYQ_075 | 1/a/274:281, 1/a/359:363 | No text annotation | homologous IL_5J7L_253 IL_77870.1 | |
| IL_6VYQ_076 | 1/a/293:295, 1/a/343:347 | No text annotation | homologous IL_5J7L_254 IL_69440.3 | |
| IL_6VYQ_077 | 1/a/481:484, 1/a/496:509 | No text annotation | geometric IL_5J7L_255 IL_81516.2 | |
| IL_6VYQ_078 | 1/a/536:539, 1/a/554:557 | Double sheared | homologous IL_5J7L_256 IL_09705.15 | |
| IL_6VYQ_079 | 1/a/564:566, 1/a/575:577 | Isolated non-canonical cWW pair | homologous IL_5J7L_257 IL_07785.1 | |
| IL_6VYQ_080 | 1/a/606:610, 1/a/618:622 | AAA cross-strand stack | homologous IL_5J7L_258 IL_66798.2 | |
| IL_6VYQ_081 | 1/a/672:674, 1/a/806:808 | No text annotation | homologous IL_7RQB_017 NA | |
| IL_6VYQ_082 | 1/a/674:678, 1/a/799:806 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_6VYQ_083 | 1/a/697:698, 1/a/763:765 | Single bulged A | geometric IL_5J7L_261 IL_31462.5 | |
| IL_6VYQ_084 | 1/a/702:703, 1/a/728:730 | Single bulged G | geometric IL_5J7L_262 IL_00225.13 | |
| IL_6VYQ_085 | 1/a/703:707, 1/a/724:728 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_6VYQ_086 | 1/a/738:740, 1/a/757:758 | Major groove platform | homologous IL_5J7L_264 IL_48076.6 | |
| IL_6VYQ_087 | 1/a/741:742, 1/a/754:756 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
| IL_6VYQ_088 | 1/a/742:744, 1/a/753:754 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
| IL_6VYQ_089 | 1/a/775:777, 1/a/787:791 | Multiple bulged bases | geometric IL_5J7L_265 IL_06549.2 | |
| IL_6VYQ_090 | 1/a/844:847, 1/a/933:934 | Other IL | homologous IL_5J7L_267 IL_90729.1 | |
| IL_6VYQ_192 | 1/a/844:848, 1/a/930:934 | No text annotation | homologous IL_5J7L_399 IL_96236.1 | |
| IL_6VYQ_091 | 1/a/847:848, 1/a/930:933 | Stack outside cWW | geometric IL_5J7L_268 IL_56987.1 | |
| IL_6VYQ_092 | 1/a/849:850, 1/a/927:929 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
| IL_6VYQ_093 | 1/a/856:862, 1/a/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_5J7L_270 IL_29198.2 | |
| IL_6VYQ_094 | 1/a/862:863, 1/a/913:915 | Single bulged G | homologous IL_5J7L_271 IL_00225.13 | |
| IL_6VYQ_095 | 1/a/864:868, 1/a/909:912 | C-loop | homologous IL_5J7L_272 IL_26222.2 | |
| IL_6VYQ_096 | 1/a/870:872, 1/a/905:907 | Isolated non-canonical cWW pair | homologous IL_5J7L_273 IL_28037.2 | |
| IL_6VYQ_097 | 1/a/875:879, 1/a/898:902 | Triple sheared | homologous IL_5J7L_274 IL_17948.2 | |
| IL_6VYQ_098 | 1/a/880:883, 1/a/893:897 | No text annotation | ||
| IL_6VYQ_099 | 1/a/994:996, 1/a/1159:1160 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_6VYQ_100 | 1/a/998:1002, 1/a/1153:1157 | UAA/GAN | homologous IL_5J7L_277 IL_38507.2 | |
| IL_6VYQ_101 | 1/a/1004:1011, 1/a/1150:1151 | SSU/LSU pseudoknot | homologous IL_5J7L_278 IL_41203.4 | |
| IL_6VYQ_102 | 1/a/1011:1013, 1/a/1149:1150 | Single bulged U | geometric IL_5J7L_279 IL_89505.4 | |
| IL_6VYQ_103 | 1/a/1018:1024, 1/a/1140:1144 | Kink-turn related | geometric IL_5J7L_280 IL_57188.5 | |
| IL_6VYQ_104 | 1/a/1024:1030, 1/a/1124:1140 | No text annotation | geometric IL_5J7L_281 IL_50715.3 | |
| IL_6VYQ_105 | 1/a/1031:1034, 1/a/1121:1123 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_6VYQ_106 | 1/a/1038:1041, 1/a/1114:1117 | Tandem non-canonical cWW pairs | homologous IL_5J7L_283 IL_85033.2 | |
| IL_6VYQ_107 | 1/a/1043:1051, 1/a/1108:1112 | Kink-turn | homologous IL_5J7L_284 IL_99692.2 | |
| IL_6VYQ_108 | 1/a/1059:1062, 1/a/1076:1079 | No text annotation | homologous IL_5J7L_285 IL_92446.2 | |
| IL_6VYQ_109 | 1/a/1087:1090, 1/a/1101:1102 | Major groove platform | geometric IL_3OXE_003 IL_48076.6 | |
| IL_6VYQ_110 | 1/a/1196:1198, 1/a/1247:1250 | Isolated cWS basepair | homologous IL_5J7L_286 IL_42997.3 | |
| IL_6VYQ_111 | 1/a/1202:1206, 1/a/1240:1243 | No text annotation | homologous IL_5J7L_287 IL_91920.1 | |
| IL_6VYQ_112 | 1/a/1208:1215, 1/a/1234:1238 | Kink-turn | homologous IL_5J7L_288 IL_70923.9 | |
| IL_6VYQ_113 | 1/a/1262:1269, 1/a/2011:2017 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_6VYQ_114 | 1/a/1310:1313, 1/a/1603:1604 | Major groove platform; stack outside cWW | homologous IL_7RQB_050 NA | |
| IL_6VYQ_115 | 1/a/1319:1323, 1/a/1331:1333 | C-loop | homologous IL_5J7L_291 IL_63596.11 | |
| IL_6VYQ_116 | 1/a/1351:1355, 1/a/1376:1380 | UAA/GAN | homologous IL_5J7L_292 IL_89021.2 | |
| IL_6VYQ_117 | 1/a/1357:1361, 1/a/1370:1374 | tSH-tHW-tHS | homologous IL_5J7L_293 IL_17136.7 | |
| IL_6VYQ_118 | 1/a/1410:1411, 1/a/1590:1592 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
| IL_6VYQ_119 | 1/a/1411:1413, 1/a/1589:1590 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
| IL_6VYQ_120 | 1/a/1415:1416, 1/a/1582:1587 | No text annotation | homologous IL_5J7L_294 IL_87211.1 | |
| IL_6VYQ_121 | 1/a/1417:1421, 1/a/1577:1581 | UAA/GAN | homologous IL_5J7L_295 IL_38507.2 | |
| IL_6VYQ_122 | 1/a/1432:1435, 1/a/1557:1561 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 IL_58112.2 | |
| IL_6VYQ_123 | 1/a/1437:1440, 1/a/1551:1555 | tSH-tHW | homologous IL_5J7L_297 IL_99646.2 | |
| IL_6VYQ_124 | 1/a/1450:1451, 1/a/1459:1461 | Single bulged U | geometric IL_5J7L_298 IL_89505.4 | |
| IL_6VYQ_125 | 1/a/1468:1471, 1/a/1520:1524 | No text annotation | homologous IL_5J7L_299 IL_68574.4 | |
| IL_6VYQ_126 | 1/a/1474:1478, 1/a/1513:1517 | tSH-tHW-tHS | homologous IL_5J7L_300 IL_38862.4 | |
| IL_6VYQ_200 | 1/a/1481:1482, 1/a/1507:1510 | 180 degree turn | homologous IL_5J7L_301 IL_00881.1 | |
| IL_6VYQ_128 | 1/a/1489:1491, 1/a/1499:1500 | Single bulged A | homologous IL_5J7L_302 IL_31462.5 | |
| IL_6VYQ_129 | 1/a/1526:1529, 1/a/1542:1546 | UAA/GAN variation | homologous IL_5J7L_303 IL_23774.1 | |
| IL_6VYQ_130 | 1/a/1651:1656, 1/a/2004:2006 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
| IL_6VYQ_131 | 1/a/1663:1665, 1/a/1995:1997 | Isolated tWW turn | homologous IL_5J7L_305 IL_67095.2 | |
| IL_6VYQ_132 | 1/a/1666:1669, 1/a/1993:1994 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_6VYQ_197 | 1/a/1666:1674, 1/a/1990:1994 | No text annotation | homologous IL_5J7L_386 IL_22854.4 | |
| IL_6VYQ_133 | 1/a/1669:1674, 1/a/1990:1993 | Intercalated tWH | homologous IL_5J7L_307 IL_76758.2 | |
| IL_6VYQ_134 | 1/a/1686:1691, 1/a/1696:1702 | tSH-tSH-tHH-tHS | homologous IL_5J7L_308 IL_47346.2 | |
| IL_6VYQ_135 | 1/a/1712:1718, 1/a/1742:1746 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_5J7L_309 IL_88269.4 | |
| IL_6VYQ_136 | 1/a/1720:1724, 1/a/1736:1740 | Triple sheared | homologous IL_5J7L_310 IL_50730.2 | |
| IL_6VYQ_137 | 1/a/1727:1728, 1/a/1731:1733 | Single bulged C | homologous IL_5J7L_311 IL_61258.15 | |
| IL_6VYQ_138 | 1/a/1770:1771, 1/a/1980:1982 | Single bulged A | homologous IL_5J7L_312 IL_31462.5 | |
| IL_6VYQ_139 | 1/a/1798:1804, 1/a/1813:1821 | Kink-turn related | homologous IL_5J7L_313 IL_17069.5 | |
| IL_6VYQ_140 | 1/a/1837:1840, 1/a/1902:1903 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
| IL_6VYQ_141 | 1/a/1841:1842, 1/a/1898:1901 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_6VYQ_142 | 1/a/1846:1849, 1/a/1893:1894 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 IL_68140.4 | |
| IL_6VYQ_198 | 1/a/1851:1860, 1/a/1882:1891 | No text annotation | homologous IL_5J7L_387 IL_61249.1 | |
| IL_6VYQ_143 | 1/a/1864:1867, 1/a/1874:1878 | UAA/GAN variation | homologous IL_5J7L_317 IL_77691.5 | |
| IL_6VYQ_144 | 1/a/1933:1934, 1/a/1964:1967 | Bulged stacked bases | homologous IL_7RQB_076 NA | |
| IL_6VYQ_146 | 1/a/2050:2052, 1/a/2617:2618 | Major groove platform | homologous IL_5J7L_320 IL_48076.6 | |
| IL_6VYQ_147 | 1/a/2054:2056, 1/a/2612:2615 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_6VYQ_150 | 1/a/2070:2071, 1/a/2438:2441 | Minor groove platform | homologous IL_5J7L_324 IL_51454.2 | |
| IL_6VYQ_151 | 1/a/2081:2083, 1/a/2236:2239 | Isolated tHS basepair with bulges | homologous IL_5J7L_325 IL_85599.2 | |
| IL_6VYQ_152 | 1/a/2085:2087, 1/a/2232:2234 | Isolated non-canonical cWW pair | homologous IL_5J7L_326 IL_28037.2 | |
| IL_6VYQ_153 | 1/a/2103:2105, 1/a/2184:2186 | Isolated non-canonical cWW pair | geometric IL_7A0S_107 IL_07785.1 | |
| IL_6VYQ_154 | 1/a/2108:2110, 1/a/2179:2181 | Isolated non-canonical cWW pair | geometric IL_4KZD_003 IL_28037.2 | |
| IL_6VYQ_155 | 1/a/2110:2121, 1/a/2177:2179 | Isolated non-canonical cWW pair | homologous IL_3U4M_001 IL_28037.2 | |
| IL_6VYQ_199 | 1/a/2123:2127, 1/a/2161:2175 | No text annotation | ||
| IL_6VYQ_157 | 1/a/2129:2136, 1/a/2155:2159 | Kink-turn | homologous IL_5J7L_330 IL_70923.9 | |
| IL_6VYQ_158 | 1/a/2202:2204, 1/a/2220:2221 | Single bulged U | homologous IL_5J7L_331 IL_89505.4 | |
| IL_6VYQ_159 | 1/a/2350:2353, 1/a/2364:2367 | Double sheared | homologous IL_5J7L_333 IL_09705.15 | |
| IL_6VYQ_160 | 1/a/2401:2403, 1/a/2414:2415 | No text annotation | ||
| IL_6VYQ_163 | 1/a/2459:2461, 1/a/2489:2493 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 IL_51387.2 | |
| IL_6VYQ_164 | 1/a/2466:2470, 1/a/2480:2484 | Triple sheared | homologous IL_5J7L_338 IL_17948.2 | |
| IL_6VYQ_166 | 1/a/2510:2512, 1/a/2574:2578 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 IL_07785.1 | |
| IL_6VYQ_167 | 1/a/2512:2513, 1/a/2571:2574 | No text annotation | homologous IL_5J7L_341 IL_42626.2 | |
| IL_6VYQ_168 | 1/a/2522:2523, 1/a/2540:2543 | Major groove platform with intercalation | homologous IL_5J7L_342 IL_02555.1 | |
| IL_6VYQ_170 | 1/a/2591:2592, 1/a/2601:2603 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_6VYQ_171 | 1/a/2636:2640, 1/a/2774:2782 | tSH-tHS-tHW | homologous IL_5J7L_345 IL_04638.3 | |
| IL_6VYQ_172 | 1/a/2652:2658, 1/a/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_5J7L_346 IL_16458.4 | |
| IL_6VYQ_173 | 1/a/2680:2684, 1/a/2725:2727 | C-loop | homologous IL_5J7L_347 IL_63596.11 | |
| IL_6VYQ_174 | 1/a/2687:2691, 1/a/2718:2722 | No text annotation | homologous IL_5J7L_348 IL_23774.1 | |
| IL_6VYQ_175 | 1/a/2695:2696, 1/a/2711:2714 | Multiple bulged bases | homologous IL_5J7L_349 IL_42626.2 | |
| IL_6VYQ_176 | 1/a/2737:2742, 1/a/2762:2767 | UAA/GAN with extra cWW | homologous IL_5J7L_350 IL_49767.8 | |
| IL_6VYQ_177 | 1/a/2806:2811, 1/a/2889:2892 | No text annotation | homologous IL_5J7L_351 IL_29471.1 | |
| IL_6VYQ_178 | 1/a/2838:2839, 1/a/2878:2880 | Major groove intercalation | homologous IL_5J7L_352 IL_66635.5 | |
| IL_6VYQ_179 | 1/a/2843:2846, 1/a/2870:2874 | Multiple bulged bases with non-canonical cWW | homologous IL_5J7L_353 IL_64231.5 | |
| IL_6VYQ_180 | 1/a/2847:2852, 1/a/2865:2869 | tHS double platform | homologous IL_5J7L_354 IL_70411.2 | |
| IL_6VYQ_181 | 1/d/17:18, 1/d/65:67 | Major groove intercalation | homologous IL_5J7L_355 IL_31462.5 | |
| IL_6VYQ_182 | 1/d/23:28, 1/d/56:60 | No text annotation | homologous IL_5J7L_356 IL_18472.4 | |
| IL_6VYQ_183 | 1/d/30:31, 1/d/51:54 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 IL_68140.4 | |
| IL_6VYQ_184 | 1/d/34:38, 1/d/44:48 | Symmetric double minor groove platform | geometric IL_5J7L_358 IL_58103.11 | |
| IL_6VYQ_185 | 1/d/71:79, 1/d/97:105 | Bacterial 5S Loop E | homologous IL_5J7L_359 IL_56455.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6VYQ_186 | No text annotation | ||
| IL_6VYQ_187 | No text annotation | ||
| IL_6VYQ_188 | No text annotation | ||
| IL_6VYQ_008 | Single bulged G, near cWW | ||
| IL_6VYQ_025 | Kink-turn related | ||
| IL_6VYQ_044 | No text annotation | ||
| IL_6VYQ_047 | No text annotation | ||
| IL_6VYQ_060 | No text annotation | ||
| IL_6VYQ_061 | Partly complementary | ||
| IL_6VYQ_193 | No text annotation | ||
| IL_6VYQ_194 | No text annotation | ||
| IL_6VYQ_195 | No text annotation | ||
| IL_6VYQ_196 | No text annotation | ||
| IL_6VYQ_127 | No text annotation | ||
| IL_6VYQ_145 | No text annotation | ||
| IL_6VYQ_148 | No text annotation | ||
| IL_6VYQ_149 | Not an internal loop | ||
| IL_6VYQ_156 | No text annotation | ||
| IL_6VYQ_161 | No text annotation | ||
| IL_6VYQ_162 | No text annotation | ||
| IL_6VYQ_165 | No text annotation | ||
| IL_6VYQ_169 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6VYQ_001 | 1/D/46:47, 1/D/361:367, 1/D/393:395 | No text annotation | homologous J3_5J7L_001 J3_67856.4 | |
| J3_6VYQ_027 | 1/D/46:52, 1/D/359:367, 1/D/393:395 | No text annotation | homologous J3_5J7L_050 J3_46317.4 | |
| J3_6VYQ_002 | 1/D/586:588, 1/D/651:654, 1/D/754:755 | No text annotation | homologous J3_5J7L_002 J3_56052.5 | |
| J3_6VYQ_028 | 1/D/586:588, 1/D/651:655, 1/D/751:755 | No text annotation | homologous J3_5J7L_051 J3_17385.4 | |
| J3_6VYQ_003 | 1/D/672:673, 1/D/717:725, 1/D/732:734 | No text annotation | homologous J3_5J7L_003 J3_11934.4 | |
| J3_6VYQ_004 | 1/D/826:829, 1/D/857:861, 1/D/868:874 | No text annotation | homologous J3_5J7L_004 J3_85054.4 | |
| J3_6VYQ_005 | 1/D/936:939, 1/D/1344:1350, 1/D/1372:1379 | No text annotation | homologous J3_4LFB_002 J3_25303.4 | |
| J3_6VYQ_029 | 1/D/943:946, 1/D/1235:1237, 1/D/1337:1340 | No text annotation | homologous J3_5J7L_005 J3_52655.4 | |
| J3_6VYQ_007 | 1/D/955:962, 1/D/973:984, 1/D/1221:1225 | No text annotation | homologous J3_5J7L_006 J3_83516.4 | |
| J3_6VYQ_008 | 1/D/990:993, 1/D/1045:1047, 1/D/1210:1215 | No text annotation | homologous J3_4LFB_005 J3_82572.1 | |
| J3_6VYQ_030 | 1/D/990:997, 1/D/1044:1047, 1/D/1210:1215 | No text annotation | homologous J3_5J7L_053 J3_76475.2 | |
| J3_6VYQ_009 | 1/D/1063:1068, 1/D/1107:1113, 1/D/1187:1193 | No text annotation | homologous J3_5J7L_008 J3_08394.3 | |
| J3_6VYQ_010 | 1/D/1073:1074, 1/D/1083:1087, 1/D/1098:1102 | No text annotation | homologous J3_5J7L_009 J3_76043.3 | |
| J3_6VYQ_011 | 1/D/1116:1118, 1/D/1155:1158, 1/D/1181:1184 | No text annotation | homologous J3_5J7L_010 J3_82365.4 | |
| J3_6VYQ_031 | 1/D/1116:1118, 1/D/1155:1161, 1/D/1175:1184 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J3_6VYQ_012 | 1/D/1237:1241, 1/D/1296:1303, 1/D/1334:1337 | No text annotation | homologous J3_4LFB_009 J3_37047.6 | |
| J3_6VYQ_013 | 1/a/30:31, 1/a/474:481, 1/a/509:510 | No text annotation | homologous J3_7RQB_001 NA | |
| J3_6VYQ_032 | 1/a/30:31, 1/a/474:484, 1/a/496:510 | No text annotation | homologous J3_9DFE_002 J3_92134.2 | |
| J3_6VYQ_033 | 1/a/32:35, 1/a/445:461, 1/a/468:473 | No text annotation | homologous J3_5J7L_067 J3_30040.2 | |
| J3_6VYQ_014 | 1/a/56:57, 1/a/70:76, 1/a/110:114 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
| J3_6VYQ_034 | 1/a/297:301, 1/a/316:325, 1/a/337:341 | No text annotation | homologous J3_5J7L_068 J3_46299.2 | |
| J3_6VYQ_015 | 1/a/683:689, 1/a/773:775, 1/a/791:794 | No text annotation | homologous J3_5J7L_038 J3_64189.2 | |
| J3_6VYQ_016 | 1/a/698:700, 1/a/732:736, 1/a/760:763 | No text annotation | homologous J3_5J7L_039 J3_44724.7 | |
| J3_6VYQ_017 | 1/a/1054:1057, 1/a/1081:1087, 1/a/1102:1105 | No text annotation | geometric J3_8VTW_042 NA | |
| J3_6VYQ_018 | 1/a/1298:1303, 1/a/1625:1627, 1/a/1639:1642 | No text annotation | homologous J3_5J7L_041 J3_32852.6 | |
| J3_6VYQ_019 | 1/a/1306:1309, 1/a/1605:1611, 1/a/1620:1622 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
| J3_6VYQ_020 | 1/a/1344:1349, 1/a/1382:1385, 1/a/1402:1403 | No text annotation | homologous J3_5J7L_043 J3_92705.1 | |
| J3_6VYQ_035 | 1/a/1424:1429, 1/a/1564:1565, 1/a/1568:1574 | No text annotation | homologous J3_5J7L_069 J3_34864.2 | |
| J3_6VYQ_021 | 1/a/2091:2093, 1/a/2196:2200, 1/a/2223:2228 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
| J3_6VYQ_036 | 1/a/2282:2284, 1/a/2384:2395, 1/a/2421:2427 | No text annotation | homologous J3_5J7L_070 J3_20992.1 | |
| J3_6VYQ_022 | 1/a/2295:2299, 1/a/2317:2323, 1/a/2332:2337 | No text annotation | homologous J3_5J7L_071 J3_44961.1 | |
| J3_6VYQ_023 | 1/a/2517:2520, 1/a/2545:2547, 1/a/2561:2567 | No text annotation | homologous J3_5J7L_046 J3_32601.5 | |
| J3_6VYQ_024 | 1/a/2789:2791, 1/a/2805:2806, 1/a/2892:2894 | No text annotation | homologous J3_5J7L_047 J3_30104.1 | |
| J3_6VYQ_025 | 1/a/2812:2815, 1/a/2831:2836, 1/a/2882:2888 | No text annotation | homologous J3_5J7L_048 J3_64069.1 | |
| J3_6VYQ_026 | 1/d/10:16, 1/d/68:70, 1/d/106:110 | No text annotation | homologous J3_5J7L_049 J3_89095.1 | |
| J4_6VYQ_001 | 1/A/7:10, 1/A/25:27, 1/A/43:49, 1/A/65:66 | tRNA junction | homologous J4_4V9Q_031 J4_70449.27 | |
| J4_6VYQ_002 | 1/B/7:10, 1/B/25:27, 1/B/43:49, 1/B/65:66 | tRNA junction | homologous J4_4V9Q_031 J4_70449.27 | |
| J4_6VYQ_003 | 1/D/115:122, 1/D/239:240, 1/D/286:289, 1/D/311:312 | No text annotation | homologous J4_5J7L_001 J4_35578.3 | |
| J4_6VYQ_004 | 1/D/142:144, 1/D/178:184, 1/D/193:198, 1/D/219:221 | No text annotation | homologous J4_5J7L_002 J4_01665.1 | |
| J4_6VYQ_005 | 1/D/575:577, 1/D/764:769, 1/D/810:821, 1/D/879:880 | No text annotation | homologous J4_5J7L_003 J4_61885.6 | |
| J4_6VYQ_006 | 1/a/268:269, 1/a/370:375, 1/a/399:406, 1/a/421:424 | No text annotation | homologous J4_5J7L_018 J4_45801.6 | |
| J4_6VYQ_007 | 1/a/297:301, 1/a/316:319, 1/a/323:325, 1/a/337:341 | No text annotation | homologous J4_5J7L_019 J4_71729.5 | |
| J4_6VYQ_008 | 1/a/601:604, 1/a/624:628, 1/a/635:638, 1/a/650:656 | No text annotation | homologous J4_5J7L_020 J4_60168.1 | |
| J4_6VYQ_009 | 1/a/1270:1276, 1/a/1294:1295, 1/a/1645:1648, 1/a/2009:2010 | No text annotation | homologous J4_5J7L_021 J4_64571.5 | |
| J4_6VYQ_010 | 1/a/1310:1314, 1/a/1338:1343, 1/a/1404:1405, 1/a/1597:1604 | No text annotation | homologous J4_5J7L_022 J4_69051.6 | |
| J4_6VYQ_011 | 1/a/1313:1314, 1/a/1338:1343, 1/a/1404:1405, 1/a/1597:1603 | No text annotation | homologous J4_5J7L_023 J4_10313.5 | |
| J4_6VYQ_012 | 1/a/1444:1445, 1/a/1466:1467, 1/a/1525:1526, 1/a/1546:1547 | No text annotation | homologous J4_5J7L_024 J4_24280.2 | |
| J4_6VYQ_013 | 1/a/1772:1776, 1/a/1788:1792, 1/a/1827:1830, 1/a/1975:1979 | No text annotation | homologous J4_5J7L_025 J4_61477.5 | |
| J4_6VYQ_014 | 1/a/2285:2289, 1/a/2343:2347, 1/a/2370:2372, 1/a/2381:2383 | No text annotation | homologous J4_5J7L_027 J4_04930.6 | |
| J4_6VYQ_015 | 1/a/2643:2646, 1/a/2674:2676, 1/a/2731:2735, 1/a/2769:2771 | No text annotation | homologous J4_5J7L_028 J4_77044.4 | |
| J5_6VYQ_001 | 1/D/36:39, 1/D/403:406, 1/D/436:440, 1/D/497:500, 1/D/545:548 | No text annotation | homologous J5_5J7L_001 J5_92941.1 | |
| J5_6VYQ_002 | 1/D/36:39, 1/D/403:406, 1/D/436:442, 1/D/492:500, 1/D/545:548 | No text annotation | homologous J5_5J7L_002 J5_67416.1 | |
| J5_6VYQ_003 | 1/D/58:61, 1/D/106:113, 1/D/314:316, 1/D/337:339, 1/D/350:354 | No text annotation | homologous J5_5J7L_003 J5_59910.6 | |
| J5_6VYQ_004 | 1/a/47:54, 1/a/116:121, 1/a/130:131, 1/a/148:150, 1/a/176:178 | No text annotation | homologous J5_5J7L_013 J5_01737.2 | |
| J5_6VYQ_005 | 1/a/531:533, 1/a/560:564, 1/a/577:579, 1/a/1261:1262, 1/a/2017:2018 | No text annotation | homologous J5_5J7L_014 J5_43153.5 | |
| J5_6VYQ_006 | 1/a/584:589, 1/a/668:671, 1/a/809:812, 1/a/1195:1196, 1/a/1250:1256 | No text annotation | homologous J5_5J7L_015 J5_74302.5 | |
| J5_6VYQ_007 | 1/a/1674:1682, 1/a/1706:1707, 1/a/1751:1752, 1/a/1756:1764, 1/a/1988:1990 | No text annotation | homologous J5_5J7L_016 J5_62523.6 | |
| J6_6VYQ_001 | 1/a/45:46, 1/a/179:183, 1/a/214:224, 1/a/231:235, 1/a/262:266, 1/a/426:433 | No text annotation | ||
| J7_6VYQ_001 | 1/a/8:15, 1/a/525:531, 1/a/2018:2023, 1/a/2040:2043, 1/a/2625:2630, 1/a/2788:2789, 1/a/2894:2895 | No text annotation | ||
| J7_6VYQ_002 | 1/a/817:822, 1/a/835:838, 1/a/940:946, 1/a/971:976, 1/a/987:991, 1/a/1163:1164, 1/a/1185:1190 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6VYQ_006 | No text annotation |
Coloring options: