8C83 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8C83_001 | 1/2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_8C83_002 | 1/2/70:81 | No text annotation | ||
| HL_8C83_003 | 1/2/154:160 | GNRA related | homologous HL_4V88_188 NA | |
| HL_8C83_004 | 1/2/190:195 | No text annotation | geometric HL_4V88_198 NA | |
| HL_8C83_005 | 1/2/230:235 | No text annotation | ||
| HL_8C83_006 | 1/2/243:250 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_8C83_007 | 1/2/276:279 | Mini UNCG | homologous HL_4V88_192 NA | |
| HL_8C83_008 | 1/2/330:338 | GNRA related | homologous HL_4V88_193 NA | |
| HL_8C83_009 | 1/2/368:373 | No text annotation | homologous HL_4V88_194 NA | |
| HL_8C83_010 | 1/2/393:404 | No text annotation | homologous HL_4V88_195 NA | |
| HL_8C83_011 | 1/2/414:419 | UNCG | homologous HL_4V88_196 NA | |
| HL_8C83_012 | 1/2/450:456 | No text annotation | homologous HL_4V88_197 NA | |
| HL_8C83_013 | 1/2/491:496 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_8C83_014 | 1/2/520:532 | No text annotation | geometric HL_4V88_199 NA | |
| HL_8C83_015 | 1/2/569:574 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_8C83_018 | 1/2/764:772 | No text annotation | homologous HL_4V88_203 NA | |
| HL_8C83_019 | 1/2/777:783 | No text annotation | homologous HL_8P9A_207 HL_48417.5 | |
| HL_8C83_028 | 1/2/829:843 | Pseudoknot geometry | geometric HL_3IGI_005 HL_93324.4 | |
| HL_8C83_022 | 1/2/1055:1064 | No text annotation | homologous HL_8P9A_212 HL_97917.2 | |
| HL_8C83_023 | 1/2/1084:1089 | GNRA | homologous HL_4V88_210 NA | |
| HL_8C83_024 | 1/2/1121:1126 | GNRA | homologous HL_4V88_211 NA | |
| HL_8C83_026 | 1/2/1698:1703 | No text annotation | ||
| HL_8C83_027 | 1/2/1778:1783 | GNRA variation | homologous HL_4V88_222 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8C83_016 | No text annotation | ||
| HL_8C83_017 | No text annotation | ||
| HL_8C83_020 | No text annotation | ||
| HL_8C83_021 | No text annotation | ||
| HL_8C83_025 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8C83_001 | 1/2/24:26, 1/2/600:601 | Single bulged C | homologous IL_4V88_384 NA | |
| IL_8C83_002 | 1/2/35:37, 1/2/471:473 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_8C83_003 | 1/2/37:41, 1/2/466:471 | Triple sheared related | homologous IL_4V88_386 NA | |
| IL_8C83_004 | 1/2/42:48, 1/2/431:433 | No text annotation | homologous IL_4V88_387 NA | |
| IL_8C83_005 | 1/2/50:52, 1/2/428:429 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_8C83_006 | 1/2/58:63, 1/2/87:89 | No text annotation | homologous IL_4V88_389 NA | |
| IL_8C83_007 | 1/2/64:69, 1/2/82:86 | No text annotation | homologous IL_4V88_390 NA | |
| IL_8C83_008 | 1/2/109:112, 1/2/302:305 | Tandem non-canonical cWW pairs | homologous IL_4V88_391 NA | |
| IL_8C83_009 | 1/2/113:116, 1/2/300:301 | Multiple bulged bases | homologous IL_4V88_392 NA | |
| IL_8C83_010 | 1/2/117:122, 1/2/295:299 | No text annotation | homologous IL_4V88_393 NA | |
| IL_8C83_011 | 1/2/144:149, 1/2/165:171 | tWH-tWH-tHW-tHW | geometric IL_4LFB_009 IL_12745.1 | |
| IL_8C83_012 | 1/2/150:152, 1/2/162:164 | Isolated cWH basepair | geometric IL_4KQ0_002 IL_10167.5 | |
| IL_8C83_013 | 1/2/186:189, 1/2/196:199 | Double sheared | homologous IL_4V88_396 NA | |
| IL_8C83_014 | 1/2/204:206, 1/2/259:263 | Major groove platform with extra cWW | homologous IL_4V88_397 NA | |
| IL_8C83_015 | 1/2/206:208, 1/2/257:259 | Isolated non-canonical cWW pair | geometric IL_3U4M_001 IL_28037.2 | |
| IL_8C83_017 | 1/2/265:267, 1/2/288:289 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_8C83_018 | 1/2/270:273, 1/2/283:285 | No text annotation | homologous IL_4V88_400 NA | |
| IL_8C83_019 | 1/2/275:276, 1/2/279:281 | Single bulged U | homologous IL_8C3A_409 NA | |
| IL_8C83_020 | 1/2/311:316, 1/2/348:355 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_8C83_021 | 1/2/318:323, 1/2/345:346 | No text annotation | homologous IL_4V88_403 NA | |
| IL_8C83_022 | 1/2/363:365, 1/2/376:381 | No text annotation | homologous IL_4V88_404 NA | |
| IL_8C83_023 | 1/2/389:391, 1/2/406:408 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_8C83_024 | 1/2/411:413, 1/2/420:422 | Isolated near basepair | homologous IL_4V88_406 NA | |
| IL_8C83_025 | 1/2/439:441, 1/2/463:464 | Single bulged U | homologous IL_4V88_407 NA | |
| IL_8C83_026 | 1/2/443:447, 1/2/460:461 | C-loop | geometric IL_5J7L_018 IL_03109.3 | |
| IL_8C83_027 | 1/2/447:448, 1/2/458:460 | Single bulged G | geometric IL_5J7L_019 IL_00225.13 | |
| IL_8C83_028 | 1/2/481:482, 1/2/505:507 | Single bulged A | homologous IL_4V88_409 NA | |
| IL_8C83_031 | 1/2/514:516, 1/2/536:543 | No text annotation | geometric IL_8VTW_081 NA | |
| IL_8C83_032 | 1/2/517:518, 1/2/533:535 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_8C83_033 | 1/2/518:520, 1/2/532:533 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_8C83_034 | 1/2/550:557, 1/2/587:588 | SSU/LSU pseudoknot | homologous IL_4V88_413 NA | |
| IL_8C83_035 | 1/2/557:559, 1/2/586:587 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_8C83_036 | 1/2/562:568, 1/2/575:583 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_8C83_069 | 1/2/616:622, 1/2/1104:1105 | No text annotation | homologous IL_8P9A_405 IL_38186.6 | |
| IL_8C83_037 | 1/2/624:626, 1/2/973:975 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_8C83_038 | 1/2/627:631, 1/2/968:972 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_8C83_039 | 1/2/646:648, 1/2/686:688 | Isolated non-canonical cWW pair | homologous IL_4V88_419 NA | |
| IL_8C83_040 | 1/2/746:747, 1/2/802:805 | Major groove minor groove platform; mini C-loop | homologous IL_4V88_423 NA | |
| IL_8C83_041 | 1/2/748:750, 1/2/799:801 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_8C83_042 | 1/2/751:759, 1/2/791:798 | No text annotation | homologous IL_4V88_425 NA | |
| IL_8C83_043 | 1/2/817:822, 1/2/850:854 | No text annotation | ||
| IL_8C83_044 | 1/2/822:824, 1/2/848:850 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_8C83_046 | 1/2/865:866, 1/2/962:965 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_8C83_047 | 1/2/868:870, 1/2/957:960 | Isolated non-canonical cWW pair | geometric IL_5UNE_004 IL_57744.1 | |
| IL_8C83_070 | 1/2/871:873, 1/2/954:956 | Isolated non-canonical cWW pair | geometric IL_2R8S_001 IL_87907.2 | |
| IL_8C83_049 | 1/2/874:878, 1/2/950:953 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_8C83_050 | 1/2/1034:1036, 1/2/1095:1101 | No text annotation | homologous IL_4V88_437 NA | |
| IL_8C83_051 | 1/2/1041:1044, 1/2/1074:1077 | Tandem non-canonical cWW pairs | homologous IL_4V88_438 NA | |
| IL_8C83_052 | 1/2/1051:1053, 1/2/1066:1067 | Single bulged U | homologous IL_4V88_439 NA | |
| IL_8C83_053 | 1/2/1111:1118, 1/2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_8C83_054 | 1/2/1146:1147, 1/2/1630:1632 | Single bulged A | geometric IL_5J7L_039 IL_31462.5 | |
| IL_8C83_055 | 1/2/1636:1638, 1/2/1764:1767 | No text annotation | homologous IL_4V88_463 NA | |
| IL_8C83_056 | 1/2/1638:1641, 1/2/1760:1764 | No text annotation | geometric IL_4V88_464 NA | |
| IL_8C83_057 | 1/2/1642:1644, 1/2/1757:1759 | Isolated non-canonical cWW pair | geometric IL_5VCI_002 IL_87907.2 | |
| IL_8C83_058 | 1/2/1644:1647, 1/2/1753:1757 | No text annotation | geometric IL_1DUQ_001 IL_25872.4 | |
| IL_8C83_059 | 1/2/1650:1652, 1/2/1748:1750 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_8C83_060 | 1/2/1653:1656, 1/2/1744:1747 | Double sheared | geometric IL_4V88_468 NA | |
| IL_8C83_061 | 1/2/1656:1658, 1/2/1743:1744 | Single bulged U | homologous IL_4V88_469 NA | |
| IL_8C83_062 | 1/2/1665:1667, 1/2/1734:1736 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_8C83_063 | 1/2/1669:1672, 1/2/1729:1732 | Double sheared | homologous IL_4V88_471 NA | |
| IL_8C83_064 | 1/2/1672:1674, 1/2/1727:1729 | Isolated non-canonical cWW pair | geometric IL_3D0U_006 IL_87907.2 | |
| IL_8C83_065 | 1/2/1675:1678, 1/2/1723:1726 | Tandem non-canonical cWW pairs | homologous IL_4V88_473 NA | |
| IL_8C83_066 | 1/2/1678:1682, 1/2/1719:1723 | Triple sheared | geometric IL_4V88_474 NA | |
| IL_8C83_067 | 1/2/1688:1690, 1/2/1711:1713 | No text annotation | geometric IL_1NBS_006 NA | |
| IL_8C83_068 | 1/2/1693:1695, 1/2/1706:1708 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_87907.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8C83_016 | No text annotation | ||
| IL_8C83_029 | Isolated non-canonical cWW pair | ||
| IL_8C83_030 | No text annotation | ||
| IL_8C83_045 | Isolated non-canonical cWW pair | ||
| IL_8C83_048 | Tandem non-canonical cWW pairs |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8C83_003 | 1/2/41:42, 1/2/433:439, 1/2/464:466 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_8C83_004 | 1/2/41:48, 1/2/431:439, 1/2/464:466 | No text annotation | homologous J3_8P9A_069 J3_46317.4 | |
| J3_8C83_005 | 1/2/213:228, 1/2/237:243, 1/2/250:252 | No text annotation | ||
| J3_8C83_006 | 1/2/633:635, 1/2/861:865, 1/2/965:966 | No text annotation | geometric J3_4V88_080 NA | |
| J3_8C83_007 | 1/2/633:635, 1/2/861:866, 1/2/962:966 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_8C83_001 | 1/2/760:763, 1/2/773:775, 1/2/785:790 | No text annotation | homologous J3_4V88_032 NA | |
| J3_8C83_002 | 1/2/1037:1039, 1/2/1079:1083, 1/2/1090:1094 | No text annotation | homologous J3_4V88_034 NA | |
| J4_8C83_001 | 1/2/99:107, 1/2/307:309, 1/2/357:361, 1/2/383:384 | No text annotation | homologous J4_8C3A_021 NA | |
| J5_8C83_001 | 1/2/31:35, 1/2/473:479, 1/2/509:514, 1/2/543:546, 1/2/592:595 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_8C83_002 | 1/2/54:57, 1/2/90:97, 1/2/386:388, 1/2/409:411, 1/2/422:426 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_8C83_003 | 1/2/636:641, 1/2/693:698, 1/2/740:744, 1/2/807:817, 1/2/854:860 | No text annotation |
Problematic loops
No problematic loops
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