7KWG Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7KWG_001 | 1/a/13:23 | No text annotation Not in a motif group | homologous HL_5J7L_001 HL_89881.2 | |
| HL_7KWG_002 | 1/a/72:97 | No text annotation Not in a motif group | ||
| HL_7KWG_003 | 1/a/159:163 | No text annotation Not in a motif group | ||
| HL_7KWG_004 | 1/a/193:198 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_7KWG_005 | 1/a/218:222 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_56691.2 | |
| HL_7KWG_006 | 1/a/267:275 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_7KWG_007 | 1/a/304:309 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_7KWG_008 | 1/a/328:341 | No text annotation Not in a motif group | homologous HL_6CZR_079 HL_81205.2 | |
| HL_7KWG_009 | 1/a/350:355 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_7KWG_010 | 1/a/387:392 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_7KWG_011 | 1/a/427:432 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_7KWG_012 | 1/a/466:486 | No text annotation Not in a motif group | ||
| HL_7KWG_013 | 1/a/530:535 | No text annotation Not in a motif group | geometric HL_5J7L_143 HL_75407.1 | |
| HL_7KWG_014 | 1/a/625:631 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_7KWG_015 | 1/a/697:706 | No text annotation Not in a motif group | homologous HL_6CZR_086 HL_12326.1 | |
| HL_7KWG_016 | 1/a/734:739 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_7KWG_017 | 1/a/794:804 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.1 | |
| HL_7KWG_018 | 1/a/848:856 | No text annotation Not in a motif group | geometric HL_2ZNI_001 HL_75407.1 | |
| HL_7KWG_019 | 1/a/872:877 | GNRA Not in a motif group | homologous HL_5J7L_019 HL_42097.1 | |
| HL_7KWG_020 | 1/a/907:912 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_7KWG_021 | 1/a/973:982 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_7KWG_022 | 1/a/1022:1027 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_42097.1 | |
| HL_7KWG_023 | 1/a/1038:1045 | No text annotation Not in a motif group | geometric HL_4V88_198 HL_56691.2 | |
| HL_7KWG_024 | 1/a/1088:1093 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_7KWG_025 | 1/a/1101:1108 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_7KWG_026 | 1/a/1144:1153 | No text annotation Not in a motif group | ||
| HL_7KWG_027 | 1/a/1176:1182 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_7KWG_028 | 1/a/1274:1283 | No text annotation Not in a motif group | ||
| HL_7KWG_029 | 1/a/1325:1334 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_89380.2 | |
| HL_7KWG_030 | 1/a/1367:1377 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_7KWG_031 | 1/a/1461:1465 | No text annotation Not in a motif group | geometric HL_4YAZ_004 HL_56691.2 | |
| HL_7KWG_032 | 1/a/1527:1532 | GNRA Not in a motif group | geometric HL_4WF9_054 HL_42097.1 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7KWG_001 | 1/a/31:33, 1/a/560:561 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_00225.2 | |
| IL_7KWG_002 | 1/a/45:46, 1/a/404:406 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.2 | |
| IL_7KWG_003 | 1/a/48:53, 1/a/367:369 | No text annotation Not in a motif group | homologous IL_5J7L_003 IL_11178.1 | |
| IL_7KWG_004 | 1/a/55:57, 1/a/364:365 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_7KWG_005 | 1/a/64:67, 1/a/102:103 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_7KWG_006 | 1/a/68:71, 1/a/98:101 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5LQO_002 IL_30621.2 | |
| IL_7KWG_007 | 1/a/128:131, 1/a/239:240 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_7KWG_008 | 1/a/132:136, 1/a/235:238 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_7KWG_009 | 1/a/147:153, 1/a/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_7KWG_010 | 1/a/154:156, 1/a/165:167 | No text annotation Not in a motif group | geometric IL_4E48_005 IL_95997.1 | |
| IL_7KWG_011 | 1/a/157:159, 1/a/163:164 | Single stack bend Not in a motif group | geometric IL_5J7L_044 IL_76488.2 | |
| IL_7KWG_012 | 1/a/250:255, 1/a/285:292 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_7KWG_013 | 1/a/257:260, 1/a/282:283 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_7KWG_014 | 1/a/300:301, 1/a/312:316 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_7KWG_015 | 1/a/375:377, 1/a/400:401 | Single bulged U Not in a motif group | geometric IL_4LFB_014 IL_83039.13 | |
| IL_7KWG_016 | 1/a/379:383, 1/a/397:398 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_75255.1 | |
| IL_7KWG_017 | 1/a/383:384, 1/a/395:397 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_7KWG_018 | 1/a/417:424, 1/a/435:441 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_7KWG_019 | 1/a/512:519, 1/a/548:549 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.7 | |
| IL_7KWG_020 | 1/a/523:529, 1/a/536:544 | No text annotation Not in a motif group | ||
| IL_7KWG_021 | 1/a/577:583, 1/a/890:891 | No text annotation Not in a motif group | homologous IL_6CZR_134 IL_69996.1 | |
| IL_7KWG_022 | 1/a/588:592, 1/a/765:769 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_7KWG_023 | 1/a/602:604, 1/a/652:653 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
| IL_7KWG_024 | 1/a/605:606, 1/a/648:651 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_7KWG_025 | 1/a/612:613, 1/a/640:642 | Single bulged U Not in a motif group | geometric IL_5TBW_146 IL_83039.13 | |
| IL_7KWG_026 | 1/a/613:620, 1/a/636:640 | No text annotation Not in a motif group | ||
| IL_7KWG_027 | 1/a/662:663, 1/a/759:762 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4LFB_027 IL_50694.2 | |
| IL_7KWG_028 | 1/a/664:666, 1/a/755:758 | No text annotation Not in a motif group | geometric IL_6CZR_136 IL_05564.2 | |
| IL_7KWG_029 | 1/a/670:674, 1/a/748:751 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_7KWG_030 | 1/a/681:686, 1/a/720:725 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_7KWG_031 | 1/a/692:696, 1/a/707:714 | Kink-turn Not in a motif group | homologous IL_5J7L_035 IL_45067.2 | |
| IL_7KWG_032 | 1/a/782:787, 1/a/811:813 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_7KWG_033 | 1/a/787:791, 1/a/807:811 | tSH-tHW-tHS Not in a motif group | geometric IL_4LFB_033 IL_17136.1 | |
| IL_7KWG_034 | 1/a/845:847, 1/a/858:859 | Single stack bend Not in a motif group | geometric IL_7KGA_003 IL_76488.2 | |
| IL_7KWG_035 | 1/a/847:848, 1/a/856:858 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_76488.2 | |
| IL_7KWG_036 | 1/a/897:904, 1/a/915:920 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
| IL_7KWG_037 | 1/a/932:933, 1/a/1404:1406 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_7KWG_038 | 1/a/935:937, 1/a/1401:1402 | Single bulged G Not in a motif group | homologous IL_5J7L_040 IL_00225.2 | |
| IL_7KWG_039 | 1/a/963:964, 1/a/1237:1239 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_7KWG_040 | 1/a/1003:1008, 1/a/1055:1057 | No text annotation Not in a motif group | ||
| IL_7KWG_041 | 1/a/1008:1009, 1/a/1053:1055 | Major groove platform Not in a motif group | geometric IL_3SUX_002 IL_27635.1 | |
| IL_7KWG_042 | 1/a/1009:1011, 1/a/1050:1053 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_46796.1 | |
| IL_7KWG_043 | 1/a/1036:1038, 1/a/1045:1046 | Minor groove platform Not in a motif group | geometric IL_7RQB_003 IL_42622.2 | |
| IL_7KWG_044 | 1/a/1060:1062, 1/a/1219:1220 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.13 | |
| IL_7KWG_045 | 1/a/1064:1068, 1/a/1215:1217 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_7KWG_046 | 1/a/1069:1070, 1/a/1210:1214 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_7KWG_047 | 1/a/1072:1073, 1/a/1206:1208 | Single bulged A Not in a motif group | geometric IL_5J7L_049 IL_37497.2 | |
| IL_7KWG_048 | 1/a/1073:1075, 1/a/1204:1206 | No text annotation Not in a motif group | geometric IL_5J7L_050 IL_95997.1 | |
| IL_7KWG_049 | 1/a/1136:1139, 1/a/1156:1160 | Minor groove platform Not in a motif group | homologous IL_6CZR_158 IL_58103.6 | |
| IL_7KWG_050 | 1/a/1141:1144, 1/a/1153:1154 | No text annotation Not in a motif group | ||
| IL_7KWG_051 | 1/a/1169:1172, 1/a/1186:1192 | No text annotation Not in a motif group | geometric IL_5J7L_053 IL_42032.1 | |
| IL_7KWG_052 | 1/a/1258:1264, 1/a/1295:1301 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_7KWG_053 | 1/a/1266:1269, 1/a/1288:1293 | No text annotation Not in a motif group | homologous IL_5J7L_055 IL_75461.4 | |
| IL_7KWG_054 | 1/a/1270:1274, 1/a/1283:1287 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.8 | |
| IL_7KWG_055 | 1/a/1314:1319, 1/a/1340:1345 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_7KWG_056 | 1/a/1410:1412, 1/a/1513:1516 | No text annotation Not in a motif group | homologous IL_5J7L_058 IL_36143.3 | |
| IL_7KWG_057 | 1/a/1412:1415, 1/a/1509:1513 | No text annotation Not in a motif group | ||
| IL_7KWG_058 | 1/a/1416:1418, 1/a/1506:1508 | No text annotation Not in a motif group | geometric IL_6IA2_002 IL_95997.1 | |
| IL_7KWG_059 | 1/a/1418:1420, 1/a/1503:1506 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5J7L_009 IL_82068.2 | |
| IL_7KWG_060 | 1/a/1423:1425, 1/a/1498:1500 | No text annotation Not in a motif group | homologous IL_5J7L_061 IL_95997.1 | |
| IL_7KWG_061 | 1/a/1427:1430, 1/a/1493:1496 | Double sheared Not in a motif group | homologous IL_4LFB_060 IL_09705.9 | |
| IL_7KWG_062 | 1/a/1435:1438, 1/a/1485:1488 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5J7L_283 IL_30621.2 | |
| IL_7KWG_063 | 1/a/1441:1446, 1/a/1478:1482 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.2 | |
| IL_7KWG_064 | 1/a/1446:1448, 1/a/1476:1478 | No text annotation Not in a motif group | geometric IL_4LFB_010 IL_95997.1 | |
| IL_7KWG_065 | 1/a/1451:1454, 1/a/1471:1473 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_012 IL_38958.7 | |
| IL_7KWG_066 | 1/a/1456:1459, 1/a/1467:1469 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7KWG_001 | 1/a/47:48, 1/a/369:375, 1/a/401:403 | No text annotation Not in a motif group | ||
| J3_7KWG_002 | 1/a/594:596, 1/a/659:662, 1/a/762:763 | No text annotation Not in a motif group | homologous J3_5J7L_002 NA | |
| J3_7KWG_003 | 1/a/680:681, 1/a/725:733, 1/a/740:742 | No text annotation Not in a motif group | ||
| J3_7KWG_004 | 1/a/834:837, 1/a/867:871, 1/a/878:884 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_7KWG_005 | 1/a/953:956, 1/a/1246:1248, 1/a/1348:1351 | No text annotation Not in a motif group | homologous J3_5J7L_005 NA | |
| J3_7KWG_006 | 1/a/964:972, 1/a/983:995, 1/a/1231:1237 | No text annotation Not in a motif group | ||
| J3_7KWG_007 | 1/a/1000:1003, 1/a/1057:1059, 1/a/1221:1226 | No text annotation Not in a motif group | ||
| J3_7KWG_008 | 1/a/1011:1018, 1/a/1031:1036, 1/a/1046:1050 | No text annotation Not in a motif group | ||
| J3_7KWG_009 | 1/a/1075:1080, 1/a/1119:1125, 1/a/1198:1204 | No text annotation Not in a motif group | ||
| J3_7KWG_010 | 1/a/1085:1086, 1/a/1095:1099, 1/a/1110:1114 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
| J3_7KWG_011 | 1/a/1128:1130, 1/a/1166:1169, 1/a/1192:1195 | No text annotation Not in a motif group | homologous J3_5J7L_010 NA | |
| J3_7KWG_012 | 1/a/1248:1252, 1/a/1307:1314, 1/a/1345:1348 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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