RNA 3D Hub //

7OHW Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7OHW_0051/1/194:201No text annotation
Not in a motif group		homologous
HL_8C3A_005
HL_89380.2
HL_7OHW_0061/1/208:212No text annotation
Not in a motif group		homologous
HL_5TBW_006
HL_98984.2
HL_7OHW_0071/1/216:224No text annotation
Not in a motif group		homologous
HL_8C3A_007
HL_08002.8
HL_7OHW_0141/1/599:604GNRA
Not in a motif group		homologous
HL_5TBW_013
HL_42097.1
HL_7OHW_0331/1/3194:3197No text annotation
Not in a motif group		geometric
HL_5TBW_068
HL_98426.1
HL_7OHW_0391/6/11:17No text annotation
Not in a motif group		geometric
HL_4WF9_003
HL_75407.1
HL_7OHW_0401/6/37:42No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
HL_7OHW_001No text annotation
HL_7OHW_002No text annotation
HL_7OHW_003No text annotation
HL_7OHW_004No text annotation
HL_7OHW_008No text annotation
HL_7OHW_009No text annotation
HL_7OHW_010No text annotation
HL_7OHW_011No text annotation
HL_7OHW_012No text annotation
HL_7OHW_013No text annotation
HL_7OHW_015No text annotation
HL_7OHW_016No text annotation
HL_7OHW_017GNRA
HL_7OHW_018No text annotation
HL_7OHW_019No text annotation
HL_7OHW_020No text annotation
HL_7OHW_021No text annotation
HL_7OHW_022No text annotation
HL_7OHW_023No text annotation
HL_7OHW_024No text annotation
HL_7OHW_025No text annotation
HL_7OHW_026No text annotation
HL_7OHW_027No text annotation
HL_7OHW_028No text annotation
HL_7OHW_029No text annotation
HL_7OHW_030GNRA
HL_7OHW_031No text annotation
HL_7OHW_032No text annotation
HL_7OHW_034No text annotation
HL_7OHW_035No text annotation
HL_7OHW_036No text annotation
HL_7OHW_037No text annotation
HL_7OHW_038No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7OHW_0121/1/337:339,
1/2/25:26		Single bulged A
Not in a motif group		homologous
IL_5TBW_013
IL_37497.2
IL_7OHW_0131/1/376:379,
1/1/390:403		No text annotation
Not in a motif group		homologous
IL_8C3A_015
IL_60992.6
IL_7OHW_0141/1/404:410,
1/2/13:19		No text annotation
Not in a motif group		homologous
IL_8C3A_016
IL_66414.6
IL_7OHW_0191/1/512:513,
1/1/577:579		No text annotation
Not in a motif group		homologous
IL_8C3A_020
IL_37497.2
IL_7OHW_0201/1/517:525,
1/1/567:573		No text annotation
Not in a motif group		homologous
IL_5TBW_019
IL_23992.1
IL_7OHW_0211/1/531:538,
1/1/553:561		No text annotation
Not in a motif group		homologous
IL_5TBW_020
IL_07703.1
IL_7OHW_0231/1/680:684,
1/1/696:700		No text annotation
Not in a motif group		homologous
IL_5TBW_022
IL_74284.1
IL_7OHW_0281/1/969:970,
1/1/1111:1113		No text annotation
Not in a motif group		homologous
IL_8C3A_038
IL_76488.2
IL_7OHW_0301/1/983:985,
1/1/1099:1100		No text annotation
Not in a motif group		homologous
IL_8C3A_040
IL_00225.2
IL_7OHW_0311/1/1120:1122,
1/1/1136:1138		No text annotation
Not in a motif group		homologous
IL_8C3A_049
IL_95997.1
IL_7OHW_0321/1/1167:1171,
1/1/1328:1332		No text annotation
Not in a motif group		homologous
IL_8C3A_051
IL_89002.2
IL_7OHW_0331/1/1173:1182,
1/1/1324:1326		No text annotation
Not in a motif group
IL_7OHW_0401/1/1376:1378,
1/1/1428:1431		No text annotation
Not in a motif group		homologous
IL_8C3A_061
IL_52767.2
IL_7OHW_0411/1/1385:1387,
1/1/1420:1421		No text annotation
Not in a motif group		homologous
IL_8C3A_062
IL_37497.2
IL_7OHW_0531/1/3177:3179,
1/1/3210:3211		Single bulged A
Not in a motif group		geometric
IL_5TBW_123
IL_37497.2
IL_7OHW_0541/1/3179:3188,
1/1/3204:3210		No text annotation
Not in a motif group		homologous
IL_5TBW_124
IL_15174.1
IL_7OHW_0551/1/3193:3194,
1/1/3197:3199		Single bulged U
Not in a motif group		homologous
IL_5TBW_125
IL_83039.13
IL_7OHW_0651/6/26:27,
1/6/51:54		Multiple bulged bases
Not in a motif group		geometric
IL_4V88_392
IL_44546.1
IL_7OHW_0661/6/30:34,
1/6/45:48		No text annotation
Not in a motif group

Problematic loops

#loop idProblemSequence
IL_7OHW_001No text annotation
IL_7OHW_002No text annotation
IL_7OHW_003No text annotation
IL_7OHW_004tSH-tHW-tHH-tHS
IL_7OHW_005No text annotation
IL_7OHW_006No text annotation
IL_7OHW_007No text annotation
IL_7OHW_008Single bulged A
IL_7OHW_009No text annotation
IL_7OHW_0108-nt loop receptor
IL_7OHW_011No text annotation
IL_7OHW_015Tandem non-canonical cWW pairs
IL_7OHW_016No text annotation
IL_7OHW_017No text annotation
IL_7OHW_018No text annotation
IL_7OHW_022No text annotation
IL_7OHW_024No text annotation
IL_7OHW_025No text annotation
IL_7OHW_026No text annotation
IL_7OHW_027No text annotation
IL_7OHW_029No text annotation
IL_7OHW_034No text annotation
IL_7OHW_035No text annotation
IL_7OHW_036Single bulged U
IL_7OHW_037Kink-turn
IL_7OHW_038No text annotation
IL_7OHW_039Major groove platform with extra cWW
IL_7OHW_042No text annotation
IL_7OHW_043Single bulged A
IL_7OHW_044No text annotation
IL_7OHW_045No text annotation
IL_7OHW_046No text annotation
IL_7OHW_047No text annotation
IL_7OHW_0488x7 Sarcin-Ricin; G-bulge
IL_7OHW_049No text annotation
IL_7OHW_050No text annotation
IL_7OHW_051No text annotation
IL_7OHW_052No text annotation
IL_7OHW_056No text annotation
IL_7OHW_057No text annotation
IL_7OHW_058Tandem non-canonical cWW pairs
IL_7OHW_059Single bulged U
IL_7OHW_060No text annotation
IL_7OHW_061No text annotation
IL_7OHW_062No text annotation
IL_7OHW_063Isolated non-canonical cWW with bulges
IL_7OHW_064Single bulged U

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7OHW_0031/1/502:503,
1/1/588:597,
1/1/606:611		No text annotation
Not in a motif group		homologous
J3_5TBW_003
NA

Problematic loops

#loop idProblemSequence
J3_7OHW_001No text annotation
J3_7OHW_002No text annotation
J3_7OHW_004No text annotation
J3_7OHW_005No text annotation
J3_7OHW_006No text annotation

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