4D61 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4D61_001 | No text annotation | ||
| HL_4D61_002 | No text annotation | ||
| HL_4D61_003 | GNRA related | ||
| HL_4D61_004 | No text annotation | ||
| HL_4D61_039 | No text annotation | ||
| HL_4D61_005 | No text annotation | ||
| HL_4D61_006 | T-loop with 2 stacked bulged bases | ||
| HL_4D61_007 | No text annotation | ||
| HL_4D61_008 | No text annotation | ||
| HL_4D61_009 | No text annotation | ||
| HL_4D61_010 | UNCG | ||
| HL_4D61_011 | No text annotation | ||
| HL_4D61_012 | No text annotation | ||
| HL_4D61_040 | No text annotation | ||
| HL_4D61_013 | No text annotation | ||
| HL_4D61_014 | GNRA variation | ||
| HL_4D61_015 | No text annotation | ||
| HL_4D61_016 | No text annotation | ||
| HL_4D61_017 | No text annotation | ||
| HL_4D61_018 | No text annotation | ||
| HL_4D61_019 | GNRA | ||
| HL_4D61_041 | No text annotation | ||
| HL_4D61_020 | No text annotation | ||
| HL_4D61_042 | No text annotation | ||
| HL_4D61_021 | No text annotation | ||
| HL_4D61_022 | GNRA | ||
| HL_4D61_023 | GNRA | ||
| HL_4D61_024 | No text annotation | ||
| HL_4D61_025 | No text annotation | ||
| HL_4D61_043 | GNRA with extra cWW | ||
| HL_4D61_026 | GNRA | ||
| HL_4D61_027 | No text annotation | ||
| HL_4D61_028 | No text annotation | ||
| HL_4D61_029 | tRNA anticodon loop | ||
| HL_4D61_044 | GNRA | ||
| HL_4D61_030 | GNRA | ||
| HL_4D61_031 | No text annotation | ||
| HL_4D61_032 | No text annotation | ||
| HL_4D61_045 | No text annotation | ||
| HL_4D61_033 | GNRA | ||
| HL_4D61_034 | GNRA variation | ||
| HL_4D61_035 | No text annotation | ||
| HL_4D61_036 | GNRA | ||
| HL_4D61_037 | GNRA | ||
| HL_4D61_038 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4D61_001 | Tandem non-canonical cWW pairs | ||
| IL_4D61_002 | Isolated non-canonical cWW pair | ||
| IL_4D61_087 | No text annotation | ||
| IL_4D61_003 | Triple sheared related | ||
| IL_4D61_004 | No text annotation | ||
| IL_4D61_005 | Minor groove platform | ||
| IL_4D61_006 | No text annotation | ||
| IL_4D61_007 | No text annotation | ||
| IL_4D61_008 | Multiple bulged bases | ||
| IL_4D61_009 | No text annotation | ||
| IL_4D61_088 | No text annotation | ||
| IL_4D61_010 | No text annotation | ||
| IL_4D61_011 | Isolated non-canonical cWW contact | ||
| IL_4D61_012 | No text annotation | ||
| IL_4D61_089 | No text annotation | ||
| IL_4D61_013 | No text annotation | ||
| IL_4D61_090 | No text annotation | ||
| IL_4D61_014 | Kink-turn with non-sequential stacking | ||
| IL_4D61_015 | No text annotation | ||
| IL_4D61_016 | No text annotation | ||
| IL_4D61_017 | Isolated cWH basepair | ||
| IL_4D61_018 | Isolated near basepair | ||
| IL_4D61_019 | Single bulged U | ||
| IL_4D61_020 | C-loop | ||
| IL_4D61_021 | Single bulged G | ||
| IL_4D61_022 | Single bulged A | ||
| IL_4D61_023 | No text annotation | ||
| IL_4D61_024 | No text annotation | ||
| IL_4D61_025 | Isolated non-canonical cWW pair | ||
| IL_4D61_026 | Kink-turn related | ||
| IL_4D61_027 | Isolated cWH basepair | ||
| IL_4D61_028 | Isolated non-canonical cWW pair | ||
| IL_4D61_029 | tSH-tHW-tHS | ||
| IL_4D61_030 | Multiple bulged bases | ||
| IL_4D61_031 | No text annotation | ||
| IL_4D61_032 | Major groove minor groove platform; mini C-loop | ||
| IL_4D61_033 | Tandem non-canonical cWW pairs | ||
| IL_4D61_034 | No text annotation | ||
| IL_4D61_035 | Isolated cWH basepair | ||
| IL_4D61_036 | Major groove platform; stack outside cWW | ||
| IL_4D61_091 | Isolated non-canonical cWW pair | ||
| IL_4D61_037 | Isolated non-canonical cWW pair | ||
| IL_4D61_038 | Tandem non-canonical cWW pairs | ||
| IL_4D61_039 | Tandem non-canonical cWW pairs | ||
| IL_4D61_040 | Tandem non-canonical cWW pairs | ||
| IL_4D61_041 | Kink-turn related | ||
| IL_4D61_042 | Other IL | ||
| IL_4D61_043 | tSH-tHW-tHS | ||
| IL_4D61_044 | No text annotation | ||
| IL_4D61_045 | Tandem non-canonical cWW pairs | ||
| IL_4D61_046 | Isolated non-canonical cWW contact | ||
| IL_4D61_047 | Single bulged U | ||
| IL_4D61_048 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | ||
| IL_4D61_092 | No text annotation | ||
| IL_4D61_049 | No text annotation | ||
| IL_4D61_050 | Tandem non-canonical cWW pairs | ||
| IL_4D61_093 | No text annotation | ||
| IL_4D61_051 | No text annotation | ||
| IL_4D61_094 | No text annotation | ||
| IL_4D61_052 | Isolated non-canonical cWW pair | ||
| IL_4D61_053 | Minor groove platform | ||
| IL_4D61_054 | Tandem non-canonical cWW pairs | ||
| IL_4D61_095 | Isolated non-canonical cWW pair | ||
| IL_4D61_096 | No text annotation | ||
| IL_4D61_055 | No text annotation | ||
| IL_4D61_097 | No text annotation | ||
| IL_4D61_056 | No text annotation | ||
| IL_4D61_057 | Single bulged U | ||
| IL_4D61_058 | Tandem non-canonical cWW pairs | ||
| IL_4D61_098 | Multiple bulged bases | ||
| IL_4D61_059 | Minor groove platform with extra cWW | ||
| IL_4D61_060 | Single bulged A | ||
| IL_4D61_061 | Isolated cWH basepair | ||
| IL_4D61_062 | Isolated non-canonical cWW contact | ||
| IL_4D61_063 | No text annotation | ||
| IL_4D61_099 | No text annotation | ||
| IL_4D61_064 | No text annotation | ||
| IL_4D61_065 | No text annotation | ||
| IL_4D61_100 | No text annotation | ||
| IL_4D61_066 | No text annotation | ||
| IL_4D61_067 | Isolated non-canonical cWW pair | ||
| IL_4D61_101 | Tandem non-canonical cWW pairs | ||
| IL_4D61_102 | No text annotation | ||
| IL_4D61_068 | No text annotation | ||
| IL_4D61_069 | Tandem non-canonical cWW pairs | ||
| IL_4D61_070 | No text annotation | ||
| IL_4D61_071 | No text annotation | ||
| IL_4D61_072 | No text annotation | ||
| IL_4D61_073 | Isolated non-canonical cWW pair | ||
| IL_4D61_074 | Non canonical cWW and near pair | ||
| IL_4D61_075 | Tandem non-canonical cWW pairs | ||
| IL_4D61_103 | Isolated non-canonical cWW pair | ||
| IL_4D61_076 | Double sheared | ||
| IL_4D61_077 | No text annotation | ||
| IL_4D61_078 | Isolated non-canonical cWW pair | ||
| IL_4D61_079 | Double sheared | ||
| IL_4D61_080 | Tandem non-canonical cWW pairs | ||
| IL_4D61_104 | Triple sheared | ||
| IL_4D61_081 | No text annotation | ||
| IL_4D61_105 | Partly complementary | ||
| IL_4D61_082 | No text annotation | ||
| IL_4D61_106 | No text annotation | ||
| IL_4D61_083 | No text annotation | ||
| IL_4D61_084 | No text annotation | ||
| IL_4D61_107 | No text annotation | ||
| IL_4D61_085 | No text annotation | ||
| IL_4D61_108 | No text annotation | ||
| IL_4D61_086 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J6_4D61_001 | 1/1/682:694, 1/1/738:750, 1/1/793:807, 1/1/856:877, 1/1/909:922, 1/1/1022:1023 | No text annotation | ||
| J6_4D61_002 | 1/1/682:694, 1/1/738:750, 1/1/793:807, 1/1/856:877, 1/1/909:923, 1/1/1019:1023 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_4D61_001 | No text annotation | ||
| J3_4D61_002 | No text annotation | ||
| J3_4D61_003 | No text annotation | ||
| J3_4D61_011 | No text annotation | ||
| J3_4D61_004 | No text annotation | ||
| J3_4D61_012 | No text annotation | ||
| J3_4D61_005 | No text annotation | ||
| J3_4D61_006 | No text annotation | ||
| J3_4D61_007 | No text annotation | ||
| J3_4D61_008 | No text annotation | ||
| J3_4D61_009 | No text annotation | ||
| J3_4D61_013 | No text annotation | ||
| J3_4D61_010 | No text annotation | ||
| J3_4D61_014 | No text annotation | ||
| J4_4D61_001 | No text annotation | ||
| J4_4D61_002 | No text annotation | ||
| J4_4D61_003 | No text annotation | ||
| J5_4D61_001 | No text annotation | ||
| J5_4D61_002 | No text annotation | ||
| J5_4D61_003 | No text annotation |
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