Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V79_0011/A1/13:22No text annotation
Not in a motif group
homologous
HL_6JXM_001
HL_25462.2
HL_4V79_0021/A1/31:39No text annotation
Not in a motif group
HL_4V79_0031/A1/53:61No text annotation
Not in a motif group
homologous
HL_5IB8_209
NA
HL_4V79_0041/A3/13:23No text annotation
Not in a motif group
HL_4V79_0051/A3/32:40tRNA anticodon loop
Not in a motif group
homologous
HL_4YCO_002
HL_53597.2
HL_4V79_0061/A3/54:62No text annotation
Not in a motif group
homologous
HL_5L4O_003
NA
HL_4V79_0071/AA/12:22No text annotation
Not in a motif group
HL_4V79_0081/AA/83:86No text annotation
Not in a motif group
geometric
HL_4V88_192
HL_53837.1
HL_4V79_0091/AA/158:163GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_42097.2
HL_4V79_0101/AA/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_42097.2
HL_4V79_0111/AA/207:212No text annotation
Not in a motif group
geometric
HL_5TBW_006
HL_98984.2
HL_4V79_0121/AA/259:267No text annotation
Not in a motif group
homologous
HL_4LFB_006
HL_69023.2
HL_4V79_0131/AA/296:301GNRA
Not in a motif group
homologous
HL_4LFB_007
HL_42097.2
HL_4V79_0141/AA/320:333No text annotation
Not in a motif group
homologous
HL_4LFB_008
HL_81205.2
HL_4V79_0151/AA/342:347No text annotation
Not in a motif group
homologous
HL_6CZR_080
HL_03562.2
HL_4V79_0161/AA/379:384No text annotation
Not in a motif group
geometric
HL_7RQB_011
HL_75407.1
HL_4V79_0171/AA/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_4V79_0181/AA/460:472No text annotation
Not in a motif group
HL_4V79_0191/AA/522:527GNRA
Not in a motif group
geometric
HL_3PDR_001
HL_42097.2
HL_4V79_0201/AA/617:623No text annotation
Not in a motif group
homologous
HL_5J7L_014
HL_26881.1
HL_4V79_0211/AA/689:698No text annotation
Not in a motif group
geometric
HL_5J7L_015
HL_12326.1
HL_4V79_0221/AA/726:731Other HL
Not in a motif group
homologous
HL_6CZR_087
HL_87030.2
HL_4V79_0231/AA/786:796No text annotation
Not in a motif group
homologous
HL_5J7L_017
HL_12326.1
HL_4V79_0241/AA/840:846No text annotation
Not in a motif group
homologous
HL_4LFB_018
HL_38927.2
HL_4V79_0251/AA/862:867GNRA
Not in a motif group
homologous
HL_4LFB_019
HL_42097.2
HL_4V79_0261/AA/897:902GNRA
Not in a motif group
homologous
HL_4LFB_020
HL_42097.2
HL_4V79_0271/AA/962:973No text annotation
Not in a motif group
HL_4V79_0281/AA/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_42097.2
HL_4V79_0291/AA/1028:1033No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_4V79_0301/AA/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_42097.2
HL_4V79_0311/AA/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_4V79_0321/AA/1134:1140No text annotation
Not in a motif group
homologous
HL_4LFB_026
HL_03562.2
HL_4V79_0331/AA/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_42097.2
HL_4V79_0341/AA/1265:1270No text annotation
Not in a motif group
homologous
HL_6CZR_099
NA
HL_4V79_0351/AA/1314:1323No text annotation
Not in a motif group
homologous
HL_5J7L_028
HL_89380.2
HL_4V79_0361/AA/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_4V79_0371/AA/1449:1454UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_4V79_0381/AA/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_4V79_0391/BA/59:68No text annotation
Not in a motif group
homologous
HL_7A0S_001
HL_99167.1
HL_4V79_0401/BA/87:95No text annotation
Not in a motif group
homologous
HL_5J7L_135
HL_84193.1
HL_4V79_0411/BA/123:128No text annotation
Not in a motif group
homologous
HL_4WF9_003
HL_75407.1
HL_4V79_0421/BA/137:142No text annotation
Not in a motif group
HL_4V79_0431/BA/158:168No text annotation
Not in a motif group
HL_4V79_0441/BA/194:201No text annotation
Not in a motif group
homologous
HL_7A0S_006
HL_06192.2
HL_4V79_0451/BA/225:230No text annotation
Not in a motif group
homologous
HL_7A0S_007
HL_02862.2
HL_4V79_0461/BA/246:252No text annotation
Not in a motif group
homologous
HL_5J7L_141
HL_67216.7
HL_4V79_0471/BA/305:312T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_89380.2
HL_4V79_0481/BA/319:323No text annotation
Not in a motif group
homologous
HL_5J7L_143
HL_75407.1
HL_4V79_0491/BA/327:335No text annotation
Not in a motif group
homologous
HL_5J7L_144
HL_08002.9
HL_4V79_0501/BA/382:392No text annotation
Not in a motif group
homologous
HL_7A0S_013
HL_91503.4
HL_4V79_0511/BA/410:417No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_4V79_0521/BA/462:467GNRA
Not in a motif group
homologous
HL_4WF9_015
HL_42097.2
HL_4V79_0531/BA/487:493No text annotation
Not in a motif group
homologous
HL_5J7L_148
HL_42097.2
HL_4V79_0541/BA/543:550No text annotation
Not in a motif group
homologous
HL_7RQB_017
NA
HL_4V79_0551/BA/564:577No text annotation
Not in a motif group
HL_4V79_0561/BA/611:617No text annotation
Not in a motif group
homologous
HL_5J7L_151
HL_90617.2
HL_4V79_0571/BA/629:634GNRA
Not in a motif group
homologous
HL_5J7L_152
HL_42097.2
HL_4V79_0581/BA/640:648No text annotation
Not in a motif group
HL_4V79_0591/BA/712:719T-loop with 1 bulged base
Not in a motif group
geometric
HL_4V88_191
HL_27930.1
HL_4V79_0601/BA/744:753No text annotation
Not in a motif group
homologous
HL_4WF9_023
HL_39334.6
HL_4V79_0611/BA/779:785Other HL
Not in a motif group
geometric
HL_2CZJ_007
HL_53845.1
HL_4V79_0621/BA/826:831No text annotation
Not in a motif group
homologous
HL_5J7L_157
HL_64365.1
HL_4V79_0641/BA/955:962No text annotation
Not in a motif group
homologous
HL_7A0S_026
HL_42097.2
HL_4V79_0651/BA/978:985No text annotation
Not in a motif group
homologous
HL_5J7L_160
HL_64430.2
HL_4V79_0661/BA/1064:1074No text annotation
Not in a motif group
HL_4V79_0671/BA/1092:1099No text annotation
Not in a motif group
homologous
HL_7A0S_029
HL_91104.1
HL_4V79_0681/BA/1172:1177No text annotation
Not in a motif group
geometric
HL_5TBW_018
HL_34168.2
HL_4V79_0691/BA/1222:1227Other HL
Not in a motif group
homologous
HL_5J7L_164
HL_87030.2
HL_4V79_0701/BA/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_89380.2
HL_4V79_0711/BA/1324:1330No text annotation
Not in a motif group
geometric
HL_4V9F_035
HL_46680.1
HL_4V79_0721/BA/1363:1368No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_4V79_0731/BA/1388:1399No text annotation
Not in a motif group
HL_4V79_0741/BA/1450:1461No text annotation
Not in a motif group
geometric
HL_4V9F_011
HL_75407.1
HL_4V79_0751/BA/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_4V79_0761/BA/1533:1538No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_01057.1
HL_4V79_0771/BA/1565:1568No text annotation
Not in a motif group
homologous
HL_7RQB_039
HL_38927.2
HL_4V79_0781/BA/1612:1619No text annotation
Not in a motif group
homologous
HL_7A0S_040
HL_64430.2
HL_4V79_0791/BA/1630:1636GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_42097.2
HL_4V79_0801/BA/1691:1696UNCG
Not in a motif group
geometric
HL_2HW8_001
HL_03562.2
HL_4V79_0811/BA/1728:1731No text annotation
Not in a motif group
HL_4V79_0821/BA/1752:1756No text annotation
Not in a motif group
homologous
HL_7RQB_044
HL_76539.2
HL_4V79_0831/BA/1777:1787No text annotation
Not in a motif group
homologous
HL_4WF9_043
HL_43613.5
HL_4V79_0841/BA/1806:1811No text annotation
Not in a motif group
homologous
HL_5J7L_179
HL_42097.2
HL_4V79_0851/BA/1868:1873Other HL
Not in a motif group
geometric
HL_1P6V_001
HL_03562.2
HL_4V79_0861/BA/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_4V79_0871/BA/1949:1957No text annotation
Not in a motif group
homologous
HL_7A0S_048
HL_51824.1
HL_4V79_0881/BA/2027:2036No text annotation
Not in a motif group
homologous
HL_4WF9_047
HL_90642.6
HL_4V79_0891/BA/2143:2148UNCG
Not in a motif group
homologous
HL_3U4M_001
HL_03562.2
HL_4V79_0901/BA/2209:2215No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_4V79_0911/BA/2248:2256No text annotation
Not in a motif group
homologous
HL_7A0S_052
HL_53171.2
HL_4V79_0921/BA/2264:2276No text annotation
Not in a motif group
homologous
HL_4WF9_050
HL_19870.6
HL_4V79_0931/BA/2302:2314No text annotation
Not in a motif group
HL_4V79_0941/BA/2323:2332No text annotation
Not in a motif group
geometric
HL_2ZZM_002
HL_23083.1
HL_4V79_0951/BA/2356:2361Other HL
Not in a motif group
homologous
HL_5J7L_190
HL_87030.2
HL_4V79_0961/BA/2374:2379GNRA
Not in a motif group
homologous
HL_4WF9_054
HL_42097.2
HL_4V79_0971/BA/2404:2413No text annotation
Not in a motif group
homologous
HL_7A0S_058
HL_30784.2
HL_4V79_0981/BA/2471:2479No text annotation
Not in a motif group
homologous
HL_4WF9_056
HL_06192.2
HL_4V79_0991/BA/2528:2535No text annotation
Not in a motif group
homologous
HL_4WF9_057
HL_91104.1
HL_4V79_1001/BA/2551:2557No text annotation
Not in a motif group
homologous
HL_7A0S_061
HL_43656.2
HL_4V79_1011/BA/2594:2599GNRA
Not in a motif group
homologous
HL_5J7L_196
HL_42097.2
HL_4V79_1021/BA/2658:2663No text annotation
Not in a motif group
geometric
HL_3OXE_002
HL_42097.2
HL_4V79_1031/BA/2700:2707No text annotation
Not in a motif group
geometric
HL_4LFB_002
HL_30784.2
HL_4V79_1041/BA/2745:2759No text annotation
Not in a motif group
homologous
HL_5J7L_199
HL_56677.7
HL_4V79_1051/BA/2796:2800No text annotation
Not in a motif group
geometric
HL_6U8D_003
HL_89098.1
HL_4V79_1061/BA/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_27930.1
HL_4V79_1071/BA/2856:2861Other HL
Not in a motif group
homologous
HL_5J7L_202
HL_42097.2
HL_4V79_1081/BB/38:44No text annotation
Not in a motif group
homologous
HL_5J7L_203
HL_87939.1
HL_4V79_1091/BB/86:90No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.2

Problematic loops

#loop idProblemSequence
HL_4V79_063No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V79_0011/AA/30:32,
1/AA/552:553
Single bulged G
Not in a motif group
homologous
IL_6CZR_113
IL_00225.3
IL_4V79_0021/AA/44:46,
1/AA/395:398
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_4V9F_097
IL_82068.2
IL_4V79_0031/AA/47:52,
1/AA/359:361
No text annotation
Not in a motif group
geometric
IL_4LFB_003
IL_11178.1
IL_4V79_0041/AA/54:56,
1/AA/356:357
Single stack bend
Not in a motif group
geometric
IL_5J7L_269
IL_76488.2
IL_4V79_0051/AA/63:66,
1/AA/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_005
IL_76389.1
IL_4V79_0061/AA/67:69,
1/AA/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_4V79_0071/AA/70:73,
1/AA/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_4V79_0081/AA/75:76,
1/AA/93:95
Single bulged G
Not in a motif group
geometric
IL_7A0S_099
IL_00225.3
IL_4V79_0091/AA/128:131,
1/AA/231:233
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_009
IL_82068.2
IL_4V79_0101/AA/132:136,
1/AA/227:230
Minor groove platform related
Not in a motif group
homologous
IL_5J7L_010
IL_58764.3
IL_4V79_0111/AA/144:146,
1/AA/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_51629.2
IL_4V79_0121/AA/147:153,
1/AA/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_4V79_0131/AA/203:206,
1/AA/213:214
Minor groove platform
Not in a motif group
geometric
IL_3MXH_005
IL_15052.1
IL_4V79_0141/AA/242:247,
1/AA/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_45067.2
IL_4V79_0151/AA/249:252,
1/AA/274:275
No text annotation
Not in a motif group
IL_4V79_0161/AA/292:293,
1/AA/304:308
C-loop
Not in a motif group
homologous
IL_6CZR_125
IL_37712.2
IL_4V79_0171/AA/367:369,
1/AA/392:393
Single bulged U
Not in a motif group
homologous
IL_4LFB_014
IL_83039.14
IL_4V79_0181/AA/371:375,
1/AA/389:390
C-loop
Not in a motif group
homologous
IL_5J7L_018
IL_75255.1
IL_4V79_0191/AA/375:376,
1/AA/387:389
Single bulged G
Not in a motif group
geometric
IL_5J7L_019
IL_00225.3
IL_4V79_0201/AA/409:417,
1/AA/426:433
No text annotation
Not in a motif group
homologous
IL_6CZR_129
IL_58819.1
IL_4V79_0211/AA/440:442,
1/AA/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_4V79_0221/AA/446:450,
1/AA/483:488
tSH-tHW-tWW
Not in a motif group
homologous
IL_5J7L_022
IL_88269.3
IL_4V79_0231/AA/504:511,
1/AA/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_4V79_0241/AA/515:521,
1/AA/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_4V79_0251/AA/569:575,
1/AA/880:881
No text annotation
Not in a motif group
homologous
IL_4LFB_022
IL_69996.1
IL_4V79_0261/AA/580:584,
1/AA/757:761
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_027
IL_17136.1
IL_4V79_0271/AA/594:596,
1/AA/644:645
Major groove platform
Not in a motif group
homologous
IL_5J7L_028
IL_27635.2
IL_4V79_0281/AA/597:598,
1/AA/640:643
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4LFB_025
IL_09061.6
IL_4V79_0291/AA/605:613,
1/AA/627:633
No text annotation
Not in a motif group
IL_4V79_0301/AA/654:655,
1/AA/751:754
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_031
IL_50694.2
IL_4V79_0311/AA/659:660,
1/AA/745:747
Single stack bend
Not in a motif group
homologous
IL_5J7L_032
IL_76488.2
IL_4V79_0321/AA/662:667,
1/AA/739:743
No text annotation
Not in a motif group
IL_4V79_0331/AA/684:689,
1/AA/698:706
No text annotation
Not in a motif group
IL_4V79_0341/AA/774:778,
1/AA/804:805
Left turn
Not in a motif group
homologous
IL_6CZR_144
IL_29346.1
IL_4V79_0351/AA/779:783,
1/AA/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_4V79_0361/AA/887:894,
1/AA/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_4V79_0371/AA/921:924,
1/AA/1392:1396
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5EW4_001
IL_30621.3
IL_4V79_0381/AA/924:927,
1/AA/1390:1392
No text annotation
Not in a motif group
IL_4V79_0391/AA/933:936,
1/AA/1379:1384
No text annotation
Not in a motif group
IL_4V79_0401/AA/953:954,
1/AA/1226:1228
No text annotation
Not in a motif group
IL_4V79_0411/AA/997:999,
1/AA/1041:1044
No text annotation
Not in a motif group
IL_4V79_0421/AA/1048:1050,
1/AA/1208:1209
Single bulged U
Not in a motif group
homologous
IL_4LFB_042
IL_83039.14
IL_4V79_0431/AA/1051:1056,
1/AA/1204:1207
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_402D_001
IL_30621.3
IL_4V79_0441/AA/1057:1058,
1/AA/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_5J7L_048
IL_93353.1
IL_4V79_0451/AA/1059:1061,
1/AA/1195:1198
No text annotation
Not in a motif group
IL_4V79_0461/AA/1061:1063,
1/AA/1193:1195
No text annotation
Not in a motif group
geometric
IL_5J7L_050
IL_95997.1
IL_4V79_0471/AA/1124:1128,
1/AA/1144:1149
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_93211.1
IL_4V79_0481/AA/1129:1132,
1/AA/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_4V79_0491/AA/1158:1161,
1/AA/1175:1181
No text annotation
Not in a motif group
homologous
IL_4LFB_050
IL_42032.1
IL_4V79_0501/AA/1247:1253,
1/AA/1284:1290
No text annotation
Not in a motif group
homologous
IL_5J7L_054
IL_09129.1
IL_4V79_0511/AA/1255:1258,
1/AA/1277:1282
No text annotation
Not in a motif group
IL_4V79_0521/AA/1259:1263,
1/AA/1272:1276
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_4V79_0531/AA/1303:1308,
1/AA/1329:1334
No text annotation
Not in a motif group
IL_4V79_0541/AA/1399:1401,
1/AA/1501:1504
No text annotation
Not in a motif group
homologous
IL_5J7L_058
IL_36143.3
IL_4V79_0551/AA/1401:1404,
1/AA/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_4V79_0561/AA/1405:1407,
1/AA/1494:1496
No text annotation
Not in a motif group
geometric
IL_4E48_004
IL_95997.1
IL_4V79_0571/AA/1407:1409,
1/AA/1491:1494
No text annotation
Not in a motif group
IL_4V79_0581/AA/1412:1414,
1/AA/1486:1488
No text annotation
Not in a motif group
homologous
IL_4LFB_059
IL_95997.1
IL_4V79_0591/AA/1416:1419,
1/AA/1481:1484
Double sheared
Not in a motif group
homologous
IL_4LFB_060
IL_09705.9
IL_4V79_0601/AA/1429:1435,
1/AA/1466:1471
No text annotation
Not in a motif group
IL_4V79_0611/AA/1439:1442,
1/AA/1460:1462
No text annotation
Not in a motif group
IL_4V79_0621/AA/1445:1448,
1/AA/1455:1457
No text annotation
Not in a motif group
IL_4V79_0631/BA/24:30,
1/BA/510:516
No text annotation
Not in a motif group
IL_4V79_0641/BA/36:37,
1/BA/442:444
Single bulged A
Not in a motif group
homologous
IL_5J7L_246
IL_37497.3
IL_4V79_0651/BA/43:44,
1/BA/434:436
Minor groove platform
Not in a motif group
homologous
IL_7RQB_003
IL_42622.2
IL_4V79_0661/BA/81:85,
1/BA/97:105
No text annotation
Not in a motif group
IL_4V79_0671/BA/183:184,
1/BA/212:214
Single stack bend
Not in a motif group
homologous
IL_5J7L_249
IL_76488.2
IL_4V79_0681/BA/188:194,
1/BA/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_7RQB_006
IL_04346.7
IL_4V79_0691/BA/239:245,
1/BA/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_007
IL_76042.2
IL_4V79_0701/BA/269:271,
1/BA/366:370
No text annotation
Not in a motif group
homologous
IL_5J7L_252
IL_47972.1
IL_4V79_0711/BA/274:281,
1/BA/359:363
No text annotation
Not in a motif group
IL_4V79_0721/BA/293:295,
1/BA/343:347
No text annotation
Not in a motif group
homologous
IL_4WF9_014
IL_69440.1
IL_4V79_0731/BA/536:539,
1/BA/554:557
Double sheared
Not in a motif group
homologous
IL_4WF9_016
IL_09705.9
IL_4V79_0741/BA/606:610,
1/BA/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_7RQB_016
IL_17136.1
IL_4V79_0751/BA/672:674,
1/BA/806:808
No text annotation
Not in a motif group
homologous
IL_5J7L_259
IL_95997.1
IL_4V79_0761/BA/674:678,
1/BA/799:806
tHW-tHW cross-strand stack
Not in a motif group
geometric
IL_5J7L_260
IL_17470.6
IL_4V79_0771/BA/697:698,
1/BA/763:765
Single bulged A
Not in a motif group
geometric
IL_7RQB_019
IL_37497.3
IL_4V79_0791/BA/702:703,
1/BA/728:730
Single bulged G
Not in a motif group
geometric
IL_7RQB_020
IL_00225.3
IL_4V79_0801/BA/703:707,
1/BA/724:728
Triple sheared
Not in a motif group
geometric
IL_7RQB_021
IL_56467.8
IL_4V79_0811/BA/738:740,
1/BA/757:758
Major groove platform
Not in a motif group
homologous
IL_5J7L_264
IL_27635.2
IL_4V79_0821/BA/775:777,
1/BA/787:791
Multiple bulged bases
Not in a motif group
homologous
IL_7RQB_023
IL_90991.6
IL_4V79_0831/BA/837:838,
1/BA/940:942
Single stack bend
Not in a motif group
homologous
IL_7RQB_024
IL_92001.1
IL_4V79_0841/BA/844:848,
1/BA/930:934
No text annotation
Not in a motif group
IL_4V79_0851/BA/849:851,
1/BA/926:929
No text annotation
Not in a motif group
geometric
IL_4P3T_002
IL_46796.1
IL_4V79_0861/BA/856:862,
1/BA/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_4WF9_031
IL_93830.3
IL_4V79_0871/BA/862:863,
1/BA/913:915
Single bulged G
Not in a motif group
homologous
IL_5J7L_271
IL_00225.3
IL_4V79_0881/BA/864:868,
1/BA/909:912
C-loop
Not in a motif group
homologous
IL_4WF9_033
IL_02509.1
IL_4V79_0891/BA/870:872,
1/BA/905:907
No text annotation
Not in a motif group
homologous
IL_5J7L_273
IL_95997.1
IL_4V79_0901/BA/875:879,
1/BA/898:902
Triple sheared
Not in a motif group
homologous
IL_5J7L_274
IL_56467.8
IL_4V79_0911/BA/880:881,
1/BA/895:897
No text annotation
Not in a motif group
IL_4V79_0921/BA/993:998,
1/BA/1157:1161
No text annotation
Not in a motif group
IL_4V79_0931/BA/998:1002,
1/BA/1153:1157
UAA/GAN
Not in a motif group
geometric
IL_5J7L_277
IL_89002.2
IL_4V79_0941/BA/1004:1011,
1/BA/1150:1151
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_278
IL_15861.7
IL_4V79_0951/BA/1011:1013,
1/BA/1149:1150
Single bulged U
Not in a motif group
geometric
IL_7RQB_038
IL_83039.14
IL_4V79_0961/BA/1018:1024,
1/BA/1140:1144
No text annotation
Not in a motif group
homologous
IL_4WF9_039
IL_57188.3
IL_4V79_0971/BA/1024:1030,
1/BA/1124:1140
No text annotation
Not in a motif group
IL_4V79_0981/BA/1031:1034,
1/BA/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_7RQB_041
IL_82068.2
IL_4V79_0991/BA/1038:1041,
1/BA/1114:1117
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_283
IL_30621.3
IL_4V79_1011/BA/1059:1062,
1/BA/1076:1079
No text annotation
Not in a motif group
IL_4V79_1021/BA/1087:1090,
1/BA/1101:1102
Multiple bulged bases
Not in a motif group
geometric
IL_6IV9_001
IL_16396.2
IL_4V79_1031/BA/1196:1198,
1/BA/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_7A0S_041
IL_52767.2
IL_4V79_1041/BA/1202:1206,
1/BA/1240:1243
No text annotation
Not in a motif group
IL_4V79_1051/BA/1208:1215,
1/BA/1234:1238
Kink-turn
Not in a motif group
homologous
IL_7A0S_043
IL_70923.2
IL_4V79_1061/BA/1319:1324,
1/BA/1330:1333
No text annotation
Not in a motif group
IL_4V79_1071/BA/1351:1355,
1/BA/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_5J7L_292
IL_89002.2
IL_4V79_1081/BA/1357:1361,
1/BA/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_4WF9_052
IL_17136.1
IL_4V79_1091/BA/1415:1416,
1/BA/1582:1587
No text annotation
Not in a motif group
homologous
IL_5J7L_294
IL_90348.1
IL_4V79_1101/BA/1417:1421,
1/BA/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_89002.2
IL_4V79_1111/BA/1432:1435,
1/BA/1557:1561
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_55178.1
IL_4V79_1121/BA/1437:1440,
1/BA/1551:1555
tSH-tHW
Not in a motif group
homologous
IL_7A0S_053
IL_04059.1
IL_4V79_1131/BA/1468:1471,
1/BA/1520:1524
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_4V79_1141/BA/1474:1478,
1/BA/1513:1517
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_300
IL_38862.1
IL_4V79_1151/BA/1481:1482,
1/BA/1507:1510
No text annotation
Not in a motif group
homologous
IL_5J7L_301
IL_67474.4
IL_4V79_1161/BA/1489:1491,
1/BA/1499:1500
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.3
IL_4V79_1171/BA/1526:1530,
1/BA/1541:1546
No text annotation
Not in a motif group
IL_4V79_1181/BA/1651:1656,
1/BA/2004:2006
No text annotation
Not in a motif group
homologous
IL_7RQB_064
IL_12566.2
IL_4V79_1191/BA/1663:1665,
1/BA/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_4WF9_063
IL_54997.7
IL_4V79_1201/BA/1666:1669,
1/BA/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_4WF9_064
IL_50694.2
IL_4V79_1211/BA/1669:1674,
1/BA/1990:1993
Intercalated tWH
Not in a motif group
geometric
IL_4V9F_062
IL_82842.2
IL_4V79_1221/BA/1686:1691,
1/BA/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
homologous
IL_7RQB_068
IL_65969.2
IL_4V79_1231/BA/1712:1718,
1/BA/1742:1746
6x5 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_309
IL_88269.3
IL_4V79_1241/BA/1720:1724,
1/BA/1736:1740
Triple sheared
Not in a motif group
homologous
IL_5J7L_310
IL_56467.8
IL_4V79_1251/BA/1727:1728,
1/BA/1731:1733
Single bulged C
Not in a motif group
homologous
IL_5J7L_311
IL_61258.12
IL_4V79_1261/BA/1770:1771,
1/BA/1980:1982
Single bulged A
Not in a motif group
homologous
IL_4WF9_068
IL_37497.3
IL_4V79_1271/BA/1798:1804,
1/BA/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_7RQB_070
IL_17069.3
IL_4V79_1281/BA/1837:1840,
1/BA/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_7RQB_071
IL_88739.1
IL_4V79_1291/BA/1841:1842,
1/BA/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_4WF9_071
IL_69996.1
IL_4V79_1301/BA/1845:1849,
1/BA/1893:1895
No text annotation
Not in a motif group
IL_4V79_1311/BA/1864:1867,
1/BA/1874:1878
UAA/GAN related
Not in a motif group
homologous
IL_5J7L_317
IL_77691.1
IL_4V79_1321/BA/1933:1934,
1/BA/1964:1967
Multiple bulged bases
Not in a motif group
geometric
IL_7V9E_001
IL_59677.2
IL_4V79_1331/BA/1934:1945,
1/BA/1961:1964
No text annotation
Not in a motif group
homologous
IL_4WF9_077
IL_81589.2
IL_4V79_1341/BA/2050:2052,
1/BA/2617:2618
Major groove platform
Not in a motif group
homologous
IL_5J7L_320
IL_27635.2
IL_4V79_1351/BA/2054:2056,
1/BA/2612:2615
No text annotation
Not in a motif group
IL_4V79_1361/BA/2067:2069,
1/BA/2442:2443
Single bulged U
Not in a motif group
homologous
IL_7RQB_080
IL_83039.14
IL_4V79_1371/BA/2070:2071,
1/BA/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_7RQB_081
IL_42622.2
IL_4V79_1381/BA/2081:2084,
1/BA/2235:2239
No text annotation
Not in a motif group
IL_4V79_1391/BA/2084:2087,
1/BA/2232:2235
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5TBW_129
IL_30621.3
IL_4V79_1401/BA/2103:2105,
1/BA/2184:2186
Stack and bulge
Not in a motif group
geometric
IL_2ET8_001
IL_82842.2
IL_4V79_1411/BA/2108:2110,
1/BA/2179:2181
No text annotation
Not in a motif group
homologous
IL_3U4M_001
IL_95997.1
IL_4V79_1451/BA/2202:2204,
1/BA/2220:2221
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.14
IL_4V79_1461/BA/2297:2299,
1/BA/2317:2321
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_7RQB_082
IL_38958.7
IL_4V79_1471/BA/2350:2353,
1/BA/2364:2367
Double sheared
Not in a motif group
homologous
IL_7RQB_089
IL_09705.9
IL_4V79_1481/BA/2401:2403,
1/BA/2414:2415
No text annotation
Not in a motif group
IL_4V79_1491/BA/2454:2455,
1/BA/2496:2498
Major groove platform
Not in a motif group
homologous
IL_7A0S_084
IL_27635.2
IL_4V79_1501/BA/2457:2461,
1/BA/2489:2494
No text annotation
Not in a motif group
IL_4V79_1511/BA/2466:2470,
1/BA/2480:2484
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.8
IL_4V79_1521/BA/2507:2509,
1/BA/2579:2582
No text annotation
Not in a motif group
geometric
IL_6DME_003
IL_63450.2
IL_4V79_1531/BA/2510:2512,
1/BA/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5J7L_340
IL_90933.2
IL_4V79_1541/BA/2512:2513,
1/BA/2571:2574
No text annotation
Not in a motif group
geometric
IL_5J7L_341
IL_71530.2
IL_4V79_1551/BA/2521:2523,
1/BA/2540:2544
No text annotation
Not in a motif group
IL_4V79_1561/BA/2591:2592,
1/BA/2601:2603
No text annotation
Not in a motif group
IL_4V79_1571/BA/2636:2640,
1/BA/2774:2782
tSH-tHS-tHW
Not in a motif group
homologous
IL_4WF9_099
IL_04638.1
IL_4V79_1581/BA/2652:2658,
1/BA/2663:2668
No text annotation
Not in a motif group
IL_4V79_1591/BA/2680:2684,
1/BA/2725:2727
C-loop
Not in a motif group
homologous
IL_7A0S_095
IL_63596.6
IL_4V79_1601/BA/2687:2691,
1/BA/2718:2722
No text annotation
Not in a motif group
homologous
IL_5J7L_348
IL_08296.3
IL_4V79_1611/BA/2695:2696,
1/BA/2711:2714
Multiple bulged bases
Not in a motif group
homologous
IL_4WF9_103
IL_71530.2
IL_4V79_1621/BA/2737:2742,
1/BA/2762:2767
UAA/GAN with extra cWW
Not in a motif group
homologous
IL_4WF9_104
IL_49767.5
IL_4V79_1631/BA/2806:2811,
1/BA/2889:2892
No text annotation
Not in a motif group
geometric
IL_5J7L_351
IL_49460.2
IL_4V79_1641/BA/2838:2840,
1/BA/2877:2880
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5ML7_010
IL_82068.2
IL_4V79_1651/BA/2843:2846,
1/BA/2870:2874
Multiple bulged bases with non-canonical cWW
Not in a motif group
homologous
IL_5J7L_353
IL_58764.3
IL_4V79_1661/BA/2847:2852,
1/BA/2865:2869
No text annotation
Not in a motif group
homologous
IL_7A0S_101
IL_83162.5
IL_4V79_1671/BB/17:18,
1/BB/65:67
Major groove intercalation
Not in a motif group
homologous
IL_7RQB_111
IL_37497.3
IL_4V79_1681/BB/23:28,
1/BB/56:60
No text annotation
Not in a motif group
homologous
IL_5J7L_356
IL_18472.2
IL_4V79_1691/BB/30:31,
1/BB/51:54
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_4V9F_103
IL_09061.6
IL_4V79_1701/BB/34:38,
1/BB/44:48
Symmetric double minor groove platform
Not in a motif group
homologous
IL_4V9F_104
IL_58103.6
IL_4V79_1711/BB/71:79,
1/BB/97:105
Bacterial 5S Loop E
Not in a motif group
homologous
IL_7RQB_115
IL_56455.3

Problematic loops

#loop idProblemSequence
IL_4V79_078Isolated cWS basepair
IL_4V79_100Kink-turn
IL_4V79_142Multiple bulged bases
IL_4V79_143No text annotation
IL_4V79_144No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_4V79_0011/AA/46:47,
1/AA/361:367,
1/AA/393:395
No text annotation
Not in a motif group
J3_4V79_0021/AA/586:588,
1/AA/651:654,
1/AA/754:755
No text annotation
Not in a motif group
J3_4V79_0031/AA/826:829,
1/AA/857:861,
1/AA/868:874
No text annotation
Not in a motif group
homologous
J3_5J7L_004
NA
J3_4V79_0041/AA/943:946,
1/AA/1235:1237,
1/AA/1337:1340
No text annotation
Not in a motif group
homologous
J3_5J7L_005
NA
J3_4V79_0051/AA/955:962,
1/AA/973:984,
1/AA/1221:1225
No text annotation
Not in a motif group
J3_4V79_0061/AA/990:997,
1/AA/1044:1047,
1/AA/1210:1215
No text annotation
Not in a motif group
J3_4V79_0071/AA/1003:1007,
1/AA/1022:1027,
1/AA/1034:1037
No text annotation
Not in a motif group