4V79 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_4V79_001 | 1/A1/13:22 | No text annotation Not in a motif group | homologous HL_6JXM_001 HL_25462.3 | |
| HL_4V79_002 | 1/A1/31:39 | No text annotation Not in a motif group | ||
| HL_4V79_003 | 1/A1/53:61 | No text annotation Not in a motif group | homologous HL_5IB8_209 NA | |
| HL_4V79_004 | 1/A3/13:23 | No text annotation Not in a motif group | ||
| HL_4V79_005 | 1/A3/32:40 | tRNA anticodon loop Not in a motif group | homologous HL_4YCO_002 HL_53597.4 | |
| HL_4V79_006 | 1/A3/54:62 | No text annotation Not in a motif group | homologous HL_5L4O_003 NA | |
| HL_4V79_007 | 1/AA/12:22 | No text annotation Not in a motif group | ||
| HL_4V79_008 | 1/AA/83:86 | No text annotation Not in a motif group | geometric HL_4V88_192 HL_69858.1 | |
| HL_4V79_009 | 1/AA/158:163 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_85603.1 | |
| HL_4V79_010 | 1/AA/186:191 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_85603.1 | |
| HL_4V79_011 | 1/AA/207:212 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.5 | |
| HL_4V79_012 | 1/AA/259:267 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.3 | |
| HL_4V79_013 | 1/AA/296:301 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_85603.1 | |
| HL_4V79_014 | 1/AA/320:333 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_4V79_015 | 1/AA/342:347 | No text annotation Not in a motif group | homologous HL_6CZR_080 HL_29960.1 | |
| HL_4V79_016 | 1/AA/379:384 | No text annotation Not in a motif group | geometric HL_7RQB_011 NA | |
| HL_4V79_017 | 1/AA/419:424 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_29960.1 | |
| HL_4V79_018 | 1/AA/460:472 | No text annotation Not in a motif group | ||
| HL_4V79_019 | 1/AA/522:527 | GNRA Not in a motif group | geometric HL_3PDR_001 HL_85603.1 | |
| HL_4V79_020 | 1/AA/617:623 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.3 | |
| HL_4V79_021 | 1/AA/689:698 | No text annotation Not in a motif group | geometric HL_5J7L_015 HL_12326.2 | |
| HL_4V79_022 | 1/AA/726:731 | Other HL Not in a motif group | homologous HL_6CZR_087 HL_87030.3 | |
| HL_4V79_023 | 1/AA/786:796 | No text annotation Not in a motif group | homologous HL_5J7L_017 HL_12326.2 | |
| HL_4V79_024 | 1/AA/840:846 | No text annotation Not in a motif group | homologous HL_4LFB_018 HL_38927.6 | |
| HL_4V79_025 | 1/AA/862:867 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_85603.1 | |
| HL_4V79_026 | 1/AA/897:902 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_85603.1 | |
| HL_4V79_027 | 1/AA/962:973 | No text annotation Not in a motif group | ||
| HL_4V79_028 | 1/AA/1012:1017 | GNRA Not in a motif group | homologous HL_4LFB_022 HL_85603.1 | |
| HL_4V79_029 | 1/AA/1028:1033 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.3 | |
| HL_4V79_030 | 1/AA/1076:1081 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_85603.1 | |
| HL_4V79_031 | 1/AA/1089:1096 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_4V79_032 | 1/AA/1134:1140 | No text annotation Not in a motif group | homologous HL_4LFB_026 HL_63154.1 | |
| HL_4V79_033 | 1/AA/1165:1171 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_85603.1 | |
| HL_4V79_034 | 1/AA/1265:1270 | No text annotation Not in a motif group | homologous HL_6CZR_099 NA | |
| HL_4V79_035 | 1/AA/1314:1323 | No text annotation Not in a motif group | homologous HL_5J7L_028 HL_41998.2 | |
| HL_4V79_036 | 1/AA/1356:1366 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_4V79_037 | 1/AA/1449:1454 | UNCG Not in a motif group | homologous HL_5J7L_030 HL_29960.1 | |
| HL_4V79_038 | 1/AA/1515:1520 | No text annotation Not in a motif group | homologous HL_4LFB_032 NA | |
| HL_4V79_039 | 1/BA/59:68 | No text annotation Not in a motif group | homologous HL_7A0S_001 HL_99167.3 | |
| HL_4V79_040 | 1/BA/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_00807.1 | |
| HL_4V79_041 | 1/BA/123:128 | No text annotation Not in a motif group | homologous HL_4WF9_003 HL_70546.2 | |
| HL_4V79_042 | 1/BA/137:142 | No text annotation Not in a motif group | ||
| HL_4V79_043 | 1/BA/158:168 | No text annotation Not in a motif group | ||
| HL_4V79_044 | 1/BA/194:201 | No text annotation Not in a motif group | homologous HL_7A0S_006 HL_06192.3 | |
| HL_4V79_045 | 1/BA/225:230 | No text annotation Not in a motif group | homologous HL_7A0S_007 HL_02862.3 | |
| HL_4V79_046 | 1/BA/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.8 | |
| HL_4V79_047 | 1/BA/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_41998.2 | |
| HL_4V79_048 | 1/BA/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_70546.2 | |
| HL_4V79_049 | 1/BA/327:335 | No text annotation Not in a motif group | homologous HL_5J7L_144 HL_08002.10 | |
| HL_4V79_050 | 1/BA/382:392 | No text annotation Not in a motif group | homologous HL_7A0S_013 HL_91503.5 | |
| HL_4V79_051 | 1/BA/410:417 | No text annotation Not in a motif group | homologous HL_7RQB_014 NA | |
| HL_4V79_052 | 1/BA/462:467 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_85603.1 | |
| HL_4V79_053 | 1/BA/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_85603.1 | |
| HL_4V79_054 | 1/BA/543:550 | No text annotation Not in a motif group | homologous HL_7RQB_017 NA | |
| HL_4V79_055 | 1/BA/564:577 | No text annotation Not in a motif group | ||
| HL_4V79_056 | 1/BA/611:617 | No text annotation Not in a motif group | homologous HL_5J7L_151 HL_90617.4 | |
| HL_4V79_057 | 1/BA/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_85603.1 | |
| HL_4V79_058 | 1/BA/640:648 | No text annotation Not in a motif group | ||
| HL_4V79_059 | 1/BA/712:719 | T-loop with 1 bulged base Not in a motif group | geometric HL_4V88_191 HL_56241.2 | |
| HL_4V79_060 | 1/BA/744:753 | No text annotation Not in a motif group | homologous HL_4WF9_023 HL_39334.7 | |
| HL_4V79_061 | 1/BA/779:785 | Other HL Not in a motif group | geometric HL_2CZJ_007 HL_53845.3 | |
| HL_4V79_062 | 1/BA/826:831 | No text annotation Not in a motif group | homologous HL_5J7L_157 HL_55195.1 | |
| HL_4V79_064 | 1/BA/955:962 | No text annotation Not in a motif group | homologous HL_7A0S_026 HL_85603.1 | |
| HL_4V79_065 | 1/BA/978:985 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_64430.3 | |
| HL_4V79_066 | 1/BA/1064:1074 | No text annotation Not in a motif group | ||
| HL_4V79_067 | 1/BA/1092:1099 | No text annotation Not in a motif group | homologous HL_7A0S_029 HL_91104.2 | |
| HL_4V79_068 | 1/BA/1172:1177 | No text annotation Not in a motif group | geometric HL_5TBW_018 HL_34168.3 | |
| HL_4V79_069 | 1/BA/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_87030.3 | |
| HL_4V79_070 | 1/BA/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_41998.2 | |
| HL_4V79_071 | 1/BA/1324:1330 | No text annotation Not in a motif group | geometric HL_4V9F_035 HL_46680.2 | |
| HL_4V79_072 | 1/BA/1363:1368 | No text annotation Not in a motif group | homologous HL_7RQB_035 NA | |
| HL_4V79_073 | 1/BA/1388:1399 | No text annotation Not in a motif group | ||
| HL_4V79_074 | 1/BA/1450:1461 | No text annotation Not in a motif group | geometric HL_4V9F_011 HL_70546.2 | |
| HL_4V79_075 | 1/BA/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_46680.2 | |
| HL_4V79_076 | 1/BA/1533:1538 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_40039.1 | |
| HL_4V79_077 | 1/BA/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 NA | |
| HL_4V79_078 | 1/BA/1612:1619 | No text annotation Not in a motif group | homologous HL_7A0S_040 HL_64430.3 | |
| HL_4V79_079 | 1/BA/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_85603.1 | |
| HL_4V79_080 | 1/BA/1691:1696 | UNCG Not in a motif group | geometric HL_2HW8_001 HL_29960.1 | |
| HL_4V79_081 | 1/BA/1728:1731 | No text annotation Not in a motif group | ||
| HL_4V79_082 | 1/BA/1752:1756 | No text annotation Not in a motif group | homologous HL_7RQB_044 NA | |
| HL_4V79_083 | 1/BA/1777:1787 | No text annotation Not in a motif group | homologous HL_4WF9_043 HL_43613.6 | |
| HL_4V79_084 | 1/BA/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_85603.1 | |
| HL_4V79_085 | 1/BA/1868:1873 | Other HL Not in a motif group | geometric HL_1P6V_001 HL_29960.1 | |
| HL_4V79_086 | 1/BA/1910:1920 | No text annotation Not in a motif group | geometric HL_5TBW_049 HL_71924.2 | |
| HL_4V79_087 | 1/BA/1949:1957 | No text annotation Not in a motif group | homologous HL_7A0S_048 HL_51824.2 | |
| HL_4V79_088 | 1/BA/2027:2036 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.7 | |
| HL_4V79_089 | 1/BA/2143:2148 | UNCG Not in a motif group | homologous HL_3U4M_001 HL_29960.1 | |
| HL_4V79_090 | 1/BA/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.7 | |
| HL_4V79_091 | 1/BA/2248:2256 | No text annotation Not in a motif group | homologous HL_7A0S_052 HL_53171.3 | |
| HL_4V79_092 | 1/BA/2264:2276 | No text annotation Not in a motif group | homologous HL_4WF9_050 HL_19870.7 | |
| HL_4V79_093 | 1/BA/2302:2314 | No text annotation Not in a motif group | ||
| HL_4V79_094 | 1/BA/2323:2332 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_4V79_095 | 1/BA/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_87030.3 | |
| HL_4V79_096 | 1/BA/2374:2379 | GNRA Not in a motif group | homologous HL_4WF9_054 HL_85603.1 | |
| HL_4V79_097 | 1/BA/2404:2413 | No text annotation Not in a motif group | homologous HL_7A0S_058 HL_40210.3 | |
| HL_4V79_098 | 1/BA/2471:2479 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_06192.3 | |
| HL_4V79_099 | 1/BA/2528:2535 | No text annotation Not in a motif group | homologous HL_4WF9_057 HL_91104.2 | |
| HL_4V79_100 | 1/BA/2551:2557 | No text annotation Not in a motif group | homologous HL_7A0S_061 HL_22584.1 | |
| HL_4V79_101 | 1/BA/2594:2599 | GNRA Not in a motif group | homologous HL_5J7L_196 HL_85603.1 | |
| HL_4V79_102 | 1/BA/2658:2663 | No text annotation Not in a motif group | geometric HL_3OXE_002 HL_85603.1 | |
| HL_4V79_103 | 1/BA/2700:2707 | No text annotation Not in a motif group | geometric HL_4LFB_002 HL_40210.3 | |
| HL_4V79_104 | 1/BA/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.8 | |
| HL_4V79_105 | 1/BA/2796:2800 | No text annotation Not in a motif group | geometric HL_6U8D_003 HL_75930.1 | |
| HL_4V79_106 | 1/BA/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_64690.2 | |
| HL_4V79_107 | 1/BA/2856:2861 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_85603.1 | |
| HL_4V79_108 | 1/BB/38:44 | No text annotation Not in a motif group | homologous HL_5J7L_203 HL_83767.1 | |
| HL_4V79_109 | 1/BB/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_38927.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_4V79_063 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_4V79_001 | 1/AA/30:32, 1/AA/552:553 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_00225.4 | |
| IL_4V79_002 | 1/AA/44:46, 1/AA/395:398 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_4V9F_097 IL_43275.2 | |
| IL_4V79_003 | 1/AA/47:52, 1/AA/359:361 | No text annotation Not in a motif group | geometric IL_4LFB_003 IL_14177.1 | |
| IL_4V79_004 | 1/AA/54:56, 1/AA/356:357 | Single stack bend Not in a motif group | geometric IL_5J7L_269 IL_76488.5 | |
| IL_4V79_005 | 1/AA/63:66, 1/AA/103:104 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_4V79_006 | 1/AA/67:69, 1/AA/99:102 | Minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_006 IL_65006.1 | |
| IL_4V79_007 | 1/AA/70:73, 1/AA/97:98 | Minor groove platform Not in a motif group | homologous IL_5J7L_007 IL_15052.1 | |
| IL_4V79_008 | 1/AA/75:76, 1/AA/93:95 | Single bulged G Not in a motif group | geometric IL_7A0S_099 IL_00225.4 | |
| IL_4V79_009 | 1/AA/128:131, 1/AA/231:233 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_009 IL_43275.2 | |
| IL_4V79_010 | 1/AA/132:136, 1/AA/227:230 | Minor groove platform related Not in a motif group | homologous IL_5J7L_010 IL_58764.4 | |
| IL_4V79_011 | 1/AA/144:146, 1/AA/176:178 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_70707.3 | |
| IL_4V79_012 | 1/AA/147:153, 1/AA/168:175 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_4V79_013 | 1/AA/203:206, 1/AA/213:214 | Minor groove platform Not in a motif group | geometric IL_3MXH_005 IL_15052.1 | |
| IL_4V79_014 | 1/AA/242:247, 1/AA/277:284 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_5J7L_014 IL_45067.3 | |
| IL_4V79_015 | 1/AA/249:252, 1/AA/274:275 | No text annotation Not in a motif group | ||
| IL_4V79_016 | 1/AA/292:293, 1/AA/304:308 | C-loop Not in a motif group | homologous IL_6CZR_125 IL_37712.2 | |
| IL_4V79_017 | 1/AA/367:369, 1/AA/392:393 | Single bulged U Not in a motif group | homologous IL_4LFB_014 IL_83039.17 | |
| IL_4V79_018 | 1/AA/371:375, 1/AA/389:390 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_75255.1 | |
| IL_4V79_019 | 1/AA/375:376, 1/AA/387:389 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.4 | |
| IL_4V79_020 | 1/AA/409:417, 1/AA/426:433 | No text annotation Not in a motif group | homologous IL_6CZR_129 IL_58819.1 | |
| IL_4V79_021 | 1/AA/440:442, 1/AA/492:497 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
| IL_4V79_022 | 1/AA/446:450, 1/AA/483:488 | tSH-tHW-tWW Not in a motif group | homologous IL_5J7L_022 IL_88269.3 | |
| IL_4V79_023 | 1/AA/504:511, 1/AA/540:541 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_024 IL_15861.8 | |
| IL_4V79_024 | 1/AA/515:521, 1/AA/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_4V79_025 | 1/AA/569:575, 1/AA/880:881 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_38186.1 | |
| IL_4V79_026 | 1/AA/580:584, 1/AA/757:761 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_027 IL_17136.2 | |
| IL_4V79_027 | 1/AA/594:596, 1/AA/644:645 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.4 | |
| IL_4V79_028 | 1/AA/597:598, 1/AA/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.9 | |
| IL_4V79_029 | 1/AA/605:613, 1/AA/627:633 | No text annotation Not in a motif group | ||
| IL_4V79_030 | 1/AA/654:655, 1/AA/751:754 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_031 IL_50694.3 | |
| IL_4V79_031 | 1/AA/659:660, 1/AA/745:747 | Single stack bend Not in a motif group | homologous IL_5J7L_032 IL_76488.5 | |
| IL_4V79_032 | 1/AA/662:667, 1/AA/739:743 | No text annotation Not in a motif group | ||
| IL_4V79_033 | 1/AA/684:689, 1/AA/698:706 | No text annotation Not in a motif group | ||
| IL_4V79_034 | 1/AA/774:778, 1/AA/804:805 | Left turn Not in a motif group | homologous IL_6CZR_144 IL_29346.1 | |
| IL_4V79_035 | 1/AA/779:783, 1/AA/799:803 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_037 IL_17136.2 | |
| IL_4V79_036 | 1/AA/887:894, 1/AA/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_4V79_037 | 1/AA/921:924, 1/AA/1392:1396 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5EW4_001 IL_30621.4 | |
| IL_4V79_038 | 1/AA/924:927, 1/AA/1390:1392 | No text annotation Not in a motif group | ||
| IL_4V79_039 | 1/AA/933:936, 1/AA/1379:1384 | No text annotation Not in a motif group | ||
| IL_4V79_040 | 1/AA/953:954, 1/AA/1226:1228 | No text annotation Not in a motif group | ||
| IL_4V79_041 | 1/AA/997:999, 1/AA/1041:1044 | No text annotation Not in a motif group | ||
| IL_4V79_042 | 1/AA/1048:1050, 1/AA/1208:1209 | Single bulged U Not in a motif group | homologous IL_4LFB_042 IL_83039.17 | |
| IL_4V79_043 | 1/AA/1051:1056, 1/AA/1204:1207 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_402D_001 IL_30621.4 | |
| IL_4V79_044 | 1/AA/1057:1058, 1/AA/1199:1203 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_80097.2 | |
| IL_4V79_045 | 1/AA/1059:1061, 1/AA/1195:1198 | No text annotation Not in a motif group | ||
| IL_4V79_046 | 1/AA/1061:1063, 1/AA/1193:1195 | No text annotation Not in a motif group | geometric IL_5J7L_050 IL_86319.3 | |
| IL_4V79_047 | 1/AA/1124:1128, 1/AA/1144:1149 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
| IL_4V79_048 | 1/AA/1129:1132, 1/AA/1142:1143 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_4V79_049 | 1/AA/1158:1161, 1/AA/1175:1181 | No text annotation Not in a motif group | homologous IL_4LFB_050 IL_42032.1 | |
| IL_4V79_050 | 1/AA/1247:1253, 1/AA/1284:1290 | No text annotation Not in a motif group | homologous IL_5J7L_054 IL_09129.1 | |
| IL_4V79_051 | 1/AA/1255:1258, 1/AA/1277:1282 | No text annotation Not in a motif group | ||
| IL_4V79_052 | 1/AA/1259:1263, 1/AA/1272:1276 | Triple sheared Not in a motif group | homologous IL_5J7L_056 IL_56467.9 | |
| IL_4V79_053 | 1/AA/1303:1308, 1/AA/1329:1334 | No text annotation Not in a motif group | ||
| IL_4V79_054 | 1/AA/1399:1401, 1/AA/1501:1504 | No text annotation Not in a motif group | homologous IL_5J7L_058 IL_36143.3 | |
| IL_4V79_055 | 1/AA/1401:1404, 1/AA/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_4V79_056 | 1/AA/1405:1407, 1/AA/1494:1496 | No text annotation Not in a motif group | geometric IL_4E48_004 IL_86319.3 | |
| IL_4V79_057 | 1/AA/1407:1409, 1/AA/1491:1494 | No text annotation Not in a motif group | ||
| IL_4V79_058 | 1/AA/1412:1414, 1/AA/1486:1488 | No text annotation Not in a motif group | homologous IL_4LFB_059 IL_86319.3 | |
| IL_4V79_059 | 1/AA/1416:1419, 1/AA/1481:1484 | Double sheared Not in a motif group | homologous IL_4LFB_060 IL_09705.11 | |
| IL_4V79_060 | 1/AA/1429:1435, 1/AA/1466:1471 | No text annotation Not in a motif group | ||
| IL_4V79_061 | 1/AA/1439:1442, 1/AA/1460:1462 | No text annotation Not in a motif group | ||
| IL_4V79_062 | 1/AA/1445:1448, 1/AA/1455:1457 | No text annotation Not in a motif group | ||
| IL_4V79_063 | 1/BA/24:30, 1/BA/510:516 | No text annotation Not in a motif group | ||
| IL_4V79_064 | 1/BA/36:37, 1/BA/442:444 | Single bulged A Not in a motif group | homologous IL_5J7L_246 IL_37497.7 | |
| IL_4V79_065 | 1/BA/43:44, 1/BA/434:436 | Minor groove platform Not in a motif group | homologous IL_7RQB_003 NA | |
| IL_4V79_066 | 1/BA/81:85, 1/BA/97:105 | No text annotation Not in a motif group | ||
| IL_4V79_067 | 1/BA/183:184, 1/BA/212:214 | Single stack bend Not in a motif group | homologous IL_5J7L_249 IL_76488.5 | |
| IL_4V79_068 | 1/BA/188:194, 1/BA/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_7RQB_006 NA | |
| IL_4V79_069 | 1/BA/239:245, 1/BA/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_7RQB_007 NA | |
| IL_4V79_070 | 1/BA/269:271, 1/BA/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_4V79_071 | 1/BA/274:281, 1/BA/359:363 | No text annotation Not in a motif group | ||
| IL_4V79_072 | 1/BA/293:295, 1/BA/343:347 | No text annotation Not in a motif group | homologous IL_4WF9_014 IL_69440.2 | |
| IL_4V79_073 | 1/BA/536:539, 1/BA/554:557 | Double sheared Not in a motif group | homologous IL_4WF9_016 IL_09705.11 | |
| IL_4V79_074 | 1/BA/606:610, 1/BA/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_7RQB_016 NA | |
| IL_4V79_075 | 1/BA/672:674, 1/BA/806:808 | No text annotation Not in a motif group | homologous IL_5J7L_259 IL_86319.3 | |
| IL_4V79_076 | 1/BA/674:678, 1/BA/799:806 | tHW-tHW cross-strand stack Not in a motif group | geometric IL_5J7L_260 IL_17470.7 | |
| IL_4V79_077 | 1/BA/697:698, 1/BA/763:765 | Single bulged A Not in a motif group | geometric IL_7RQB_019 NA | |
| IL_4V79_079 | 1/BA/702:703, 1/BA/728:730 | Single bulged G Not in a motif group | geometric IL_7RQB_020 NA | |
| IL_4V79_080 | 1/BA/703:707, 1/BA/724:728 | Triple sheared Not in a motif group | geometric IL_7RQB_021 NA | |
| IL_4V79_081 | 1/BA/738:740, 1/BA/757:758 | Major groove platform Not in a motif group | homologous IL_5J7L_264 IL_27635.4 | |
| IL_4V79_082 | 1/BA/775:777, 1/BA/787:791 | Multiple bulged bases Not in a motif group | homologous IL_7RQB_023 NA | |
| IL_4V79_083 | 1/BA/837:838, 1/BA/940:942 | Single stack bend Not in a motif group | homologous IL_7RQB_024 NA | |
| IL_4V79_084 | 1/BA/844:848, 1/BA/930:934 | No text annotation Not in a motif group | ||
| IL_4V79_085 | 1/BA/849:851, 1/BA/926:929 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_46796.2 | |
| IL_4V79_086 | 1/BA/856:862, 1/BA/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | geometric IL_4WF9_031 IL_93830.3 | |
| IL_4V79_087 | 1/BA/862:863, 1/BA/913:915 | Single bulged G Not in a motif group | homologous IL_5J7L_271 IL_00225.4 | |
| IL_4V79_088 | 1/BA/864:868, 1/BA/909:912 | C-loop Not in a motif group | homologous IL_4WF9_033 IL_02509.2 | |
| IL_4V79_089 | 1/BA/870:872, 1/BA/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_86319.3 | |
| IL_4V79_090 | 1/BA/875:879, 1/BA/898:902 | Triple sheared Not in a motif group | homologous IL_5J7L_274 IL_56467.9 | |
| IL_4V79_091 | 1/BA/880:881, 1/BA/895:897 | No text annotation Not in a motif group | ||
| IL_4V79_092 | 1/BA/993:998, 1/BA/1157:1161 | No text annotation Not in a motif group | ||
| IL_4V79_093 | 1/BA/998:1002, 1/BA/1153:1157 | UAA/GAN Not in a motif group | geometric IL_5J7L_277 IL_89002.3 | |
| IL_4V79_094 | 1/BA/1004:1011, 1/BA/1150:1151 | SSU/LSU pseudoknot Not in a motif group | homologous IL_5J7L_278 IL_15861.8 | |
| IL_4V79_095 | 1/BA/1011:1013, 1/BA/1149:1150 | Single bulged U Not in a motif group | geometric IL_7RQB_038 NA | |
| IL_4V79_096 | 1/BA/1018:1024, 1/BA/1140:1144 | No text annotation Not in a motif group | homologous IL_4WF9_039 IL_57188.4 | |
| IL_4V79_097 | 1/BA/1024:1030, 1/BA/1124:1140 | No text annotation Not in a motif group | ||
| IL_4V79_098 | 1/BA/1031:1034, 1/BA/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_7RQB_041 NA | |
| IL_4V79_099 | 1/BA/1038:1041, 1/BA/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_30621.4 | |
| IL_4V79_101 | 1/BA/1059:1062, 1/BA/1076:1079 | No text annotation Not in a motif group | ||
| IL_4V79_102 | 1/BA/1087:1090, 1/BA/1101:1102 | Multiple bulged bases Not in a motif group | geometric IL_6IV9_001 IL_16396.3 | |
| IL_4V79_103 | 1/BA/1196:1198, 1/BA/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_7A0S_041 IL_52767.5 | |
| IL_4V79_104 | 1/BA/1202:1206, 1/BA/1240:1243 | No text annotation Not in a motif group | ||
| IL_4V79_105 | 1/BA/1208:1215, 1/BA/1234:1238 | Kink-turn Not in a motif group | homologous IL_7A0S_043 IL_70923.3 | |
| IL_4V79_106 | 1/BA/1319:1324, 1/BA/1330:1333 | No text annotation Not in a motif group | ||
| IL_4V79_107 | 1/BA/1351:1355, 1/BA/1376:1380 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_89002.3 | |
| IL_4V79_108 | 1/BA/1357:1361, 1/BA/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_4WF9_052 IL_17136.2 | |
| IL_4V79_109 | 1/BA/1415:1416, 1/BA/1582:1587 | No text annotation Not in a motif group | homologous IL_5J7L_294 IL_90348.1 | |
| IL_4V79_110 | 1/BA/1417:1421, 1/BA/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_89002.3 | |
| IL_4V79_111 | 1/BA/1432:1435, 1/BA/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_55178.1 | |
| IL_4V79_112 | 1/BA/1437:1440, 1/BA/1551:1555 | tSH-tHW Not in a motif group | homologous IL_7A0S_053 IL_04059.2 | |
| IL_4V79_113 | 1/BA/1468:1471, 1/BA/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.3 | |
| IL_4V79_114 | 1/BA/1474:1478, 1/BA/1513:1517 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_300 IL_38862.2 | |
| IL_4V79_115 | 1/BA/1481:1482, 1/BA/1507:1510 | No text annotation Not in a motif group | homologous IL_5J7L_301 IL_67474.5 | |
| IL_4V79_116 | 1/BA/1489:1491, 1/BA/1499:1500 | Single bulged A Not in a motif group | homologous IL_5J7L_302 IL_37497.7 | |
| IL_4V79_117 | 1/BA/1526:1530, 1/BA/1541:1546 | No text annotation Not in a motif group | ||
| IL_4V79_118 | 1/BA/1651:1656, 1/BA/2004:2006 | No text annotation Not in a motif group | homologous IL_7RQB_064 NA | |
| IL_4V79_119 | 1/BA/1663:1665, 1/BA/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_4WF9_063 IL_54997.8 | |
| IL_4V79_120 | 1/BA/1666:1669, 1/BA/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4WF9_064 IL_50694.3 | |
| IL_4V79_121 | 1/BA/1669:1674, 1/BA/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_4V9F_062 IL_76273.2 | |
| IL_4V79_122 | 1/BA/1686:1691, 1/BA/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | homologous IL_7RQB_068 NA | |
| IL_4V79_123 | 1/BA/1712:1718, 1/BA/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.3 | |
| IL_4V79_124 | 1/BA/1720:1724, 1/BA/1736:1740 | Triple sheared Not in a motif group | homologous IL_5J7L_310 IL_96141.2 | |
| IL_4V79_125 | 1/BA/1727:1728, 1/BA/1731:1733 | Single bulged C Not in a motif group | homologous IL_5J7L_311 IL_61258.13 | |
| IL_4V79_126 | 1/BA/1770:1771, 1/BA/1980:1982 | Single bulged A Not in a motif group | homologous IL_4WF9_068 IL_37497.7 | |
| IL_4V79_127 | 1/BA/1798:1804, 1/BA/1813:1821 | Kink-turn related Not in a motif group | homologous IL_7RQB_070 NA | |
| IL_4V79_128 | 1/BA/1837:1840, 1/BA/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_7RQB_071 NA | |
| IL_4V79_129 | 1/BA/1841:1842, 1/BA/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_4WF9_071 IL_88375.1 | |
| IL_4V79_130 | 1/BA/1845:1849, 1/BA/1893:1895 | No text annotation Not in a motif group | ||
| IL_4V79_131 | 1/BA/1864:1867, 1/BA/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_77691.2 | |
| IL_4V79_132 | 1/BA/1933:1934, 1/BA/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_7V9E_001 IL_59677.3 | |
| IL_4V79_133 | 1/BA/1934:1945, 1/BA/1961:1964 | No text annotation Not in a motif group | homologous IL_4WF9_077 IL_81589.2 | |
| IL_4V79_134 | 1/BA/2050:2052, 1/BA/2617:2618 | Major groove platform Not in a motif group | homologous IL_5J7L_320 IL_27635.4 | |
| IL_4V79_135 | 1/BA/2054:2056, 1/BA/2612:2615 | No text annotation Not in a motif group | ||
| IL_4V79_136 | 1/BA/2067:2069, 1/BA/2442:2443 | Single bulged U Not in a motif group | homologous IL_7RQB_080 NA | |
| IL_4V79_137 | 1/BA/2070:2071, 1/BA/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 NA | |
| IL_4V79_138 | 1/BA/2081:2084, 1/BA/2235:2239 | No text annotation Not in a motif group | ||
| IL_4V79_139 | 1/BA/2084:2087, 1/BA/2232:2235 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_129 IL_30621.4 | |
| IL_4V79_140 | 1/BA/2103:2105, 1/BA/2184:2186 | Stack and bulge Not in a motif group | geometric IL_2ET8_001 IL_64417.2 | |
| IL_4V79_141 | 1/BA/2108:2110, 1/BA/2179:2181 | No text annotation Not in a motif group | homologous IL_3U4M_001 IL_86319.3 | |
| IL_4V79_145 | 1/BA/2202:2204, 1/BA/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_83039.17 | |
| IL_4V79_146 | 1/BA/2297:2299, 1/BA/2317:2321 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_082 NA | |
| IL_4V79_147 | 1/BA/2350:2353, 1/BA/2364:2367 | Double sheared Not in a motif group | homologous IL_7RQB_089 NA | |
| IL_4V79_148 | 1/BA/2401:2403, 1/BA/2414:2415 | No text annotation Not in a motif group | ||
| IL_4V79_149 | 1/BA/2454:2455, 1/BA/2496:2498 | Major groove platform Not in a motif group | homologous IL_7A0S_084 IL_27635.4 | |
| IL_4V79_150 | 1/BA/2457:2461, 1/BA/2489:2494 | No text annotation Not in a motif group | ||
| IL_4V79_151 | 1/BA/2466:2470, 1/BA/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.9 | |
| IL_4V79_152 | 1/BA/2507:2509, 1/BA/2579:2582 | No text annotation Not in a motif group | geometric IL_6DME_003 IL_63450.3 | |
| IL_4V79_153 | 1/BA/2510:2512, 1/BA/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_340 IL_90933.3 | |
| IL_4V79_154 | 1/BA/2512:2513, 1/BA/2571:2574 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_71530.3 | |
| IL_4V79_155 | 1/BA/2521:2523, 1/BA/2540:2544 | No text annotation Not in a motif group | ||
| IL_4V79_156 | 1/BA/2591:2592, 1/BA/2601:2603 | No text annotation Not in a motif group | ||
| IL_4V79_157 | 1/BA/2636:2640, 1/BA/2774:2782 | tSH-tHS-tHW Not in a motif group | homologous IL_4WF9_099 IL_04638.2 | |
| IL_4V79_158 | 1/BA/2652:2658, 1/BA/2663:2668 | No text annotation Not in a motif group | ||
| IL_4V79_159 | 1/BA/2680:2684, 1/BA/2725:2727 | C-loop Not in a motif group | homologous IL_7A0S_095 IL_63596.7 | |
| IL_4V79_160 | 1/BA/2687:2691, 1/BA/2718:2722 | No text annotation Not in a motif group | homologous IL_5J7L_348 IL_08296.4 | |
| IL_4V79_161 | 1/BA/2695:2696, 1/BA/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_4WF9_103 IL_71530.3 | |
| IL_4V79_162 | 1/BA/2737:2742, 1/BA/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_4WF9_104 IL_49767.6 | |
| IL_4V79_163 | 1/BA/2806:2811, 1/BA/2889:2892 | No text annotation Not in a motif group | geometric IL_5J7L_351 IL_49460.2 | |
| IL_4V79_164 | 1/BA/2838:2840, 1/BA/2877:2880 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_5ML7_010 IL_43275.2 | |
| IL_4V79_165 | 1/BA/2843:2846, 1/BA/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.4 | |
| IL_4V79_166 | 1/BA/2847:2852, 1/BA/2865:2869 | No text annotation Not in a motif group | homologous IL_7A0S_101 IL_83162.6 | |
| IL_4V79_167 | 1/BB/17:18, 1/BB/65:67 | Major groove intercalation Not in a motif group | homologous IL_7RQB_111 NA | |
| IL_4V79_168 | 1/BB/23:28, 1/BB/56:60 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.2 | |
| IL_4V79_169 | 1/BB/30:31, 1/BB/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4V9F_103 IL_09061.9 | |
| IL_4V79_170 | 1/BB/34:38, 1/BB/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_4V9F_104 IL_58103.7 | |
| IL_4V79_171 | 1/BB/71:79, 1/BB/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_7RQB_115 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_4V79_078 | Isolated cWS basepair | ||
| IL_4V79_100 | Kink-turn | ||
| IL_4V79_142 | Multiple bulged bases | ||
| IL_4V79_143 | No text annotation | ||
| IL_4V79_144 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_4V79_001 | 1/AA/46:47, 1/AA/361:367, 1/AA/393:395 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
| J3_4V79_002 | 1/AA/586:588, 1/AA/651:654, 1/AA/754:755 | No text annotation Not in a motif group | ||
| J3_4V79_003 | 1/AA/826:829, 1/AA/857:861, 1/AA/868:874 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_4V79_004 | 1/AA/943:946, 1/AA/1235:1237, 1/AA/1337:1340 | No text annotation Not in a motif group | homologous J3_5J7L_005 NA | |
| J3_4V79_005 | 1/AA/955:962, 1/AA/973:984, 1/AA/1221:1225 | No text annotation Not in a motif group | ||
| J3_4V79_006 | 1/AA/990:997, 1/AA/1044:1047, 1/AA/1210:1215 | No text annotation Not in a motif group | ||
| J3_4V79_007 | 1/AA/1003:1007, 1/AA/1022:1027, 1/AA/1034:1037 | No text annotation Not in a motif group | ||
| J3_4V79_008 | 1/AA/1063:1068, 1/AA/1107:1113, 1/AA/1187:1193 | No text annotation Not in a motif group | ||
| J3_4V79_009 | 1/AA/1073:1074, 1/AA/1083:1087, 1/AA/1098:1102 | No text annotation Not in a motif group | homologous J3_5J7L_009 NA | |
| J3_4V79_010 | 1/AA/1115:1118, 1/AA/1155:1158, 1/AA/1181:1185 | No text annotation Not in a motif group | ||
| J3_4V79_011 | 1/AA/1237:1241, 1/AA/1296:1303, 1/AA/1334:1337 | No text annotation Not in a motif group | ||
| J3_4V79_012 | 1/BA/56:57, 1/BA/70:76, 1/BA/110:114 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_4V79_013 | 1/BA/683:689, 1/BA/773:775, 1/BA/791:794 | No text annotation Not in a motif group | homologous J3_5J7L_038 NA | |
| J3_4V79_014 | 1/BA/698:700, 1/BA/732:736, 1/BA/760:763 | No text annotation Not in a motif group | homologous J3_5J7L_039 NA | |
| J3_4V79_015 | 1/BA/1055:1057, 1/BA/1081:1087, 1/BA/1102:1104 | No text annotation Not in a motif group | homologous J3_7RQB_006 NA | |
| J3_4V79_016 | 1/BA/1298:1303, 1/BA/1625:1627, 1/BA/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_4V79_017 | 1/BA/1306:1309, 1/BA/1605:1611, 1/BA/1620:1622 | No text annotation Not in a motif group | homologous J3_7RQB_008 NA | |
| J3_4V79_018 | 1/BA/2091:2093, 1/BA/2196:2200, 1/BA/2223:2228 | No text annotation Not in a motif group | ||
| J3_4V79_019 | 1/BA/2295:2297, 1/BA/2321:2323, 1/BA/2332:2337 | No text annotation Not in a motif group | homologous J3_5J7L_045 NA | |
| J3_4V79_020 | 1/BA/2517:2520, 1/BA/2545:2547, 1/BA/2561:2567 | No text annotation Not in a motif group | homologous J3_5J7L_046 NA | |
| J3_4V79_021 | 1/BA/2789:2791, 1/BA/2805:2806, 1/BA/2892:2894 | No text annotation Not in a motif group | homologous J3_5J7L_047 NA | |
| J3_4V79_022 | 1/BA/2812:2815, 1/BA/2831:2836, 1/BA/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA | |
| J3_4V79_023 | 1/BB/10:16, 1/BB/68:70, 1/BB/106:110 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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