7D63 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7D63_007 | 1/SA/70:81 | No text annotation Not in a motif group | ||
| HL_7D63_008 | 1/SA/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_43074.18 | |
| HL_7D63_009 | 1/SA/186:199 | No text annotation Not in a motif group | ||
| HL_7D63_010 | 1/SA/230:235 | No text annotation Not in a motif group | geometric HL_4WF9_009 HL_68478.1 | |
| HL_7D63_011 | 1/SA/275:281 | No text annotation Not in a motif group | ||
| HL_7D63_012 | 1/SA/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_93727.5 | |
| HL_7D63_013 | 1/SA/364:381 | No text annotation Not in a motif group | ||
| HL_7D63_014 | 1/SA/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_22443.1 | |
| HL_7D63_015 | 1/SA/450:456 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_62869.3 | |
| HL_7D63_016 | 1/SA/491:496 | GNRA Not in a motif group | geometric HL_4V9F_040 HL_43074.18 | |
| HL_7D63_017 | 1/SA/520:532 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_17086.2 | |
| HL_7D63_018 | 1/SA/561:566 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_58912.1 | |
| HL_7D63_021 | 1/SA/900:909 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_87219.4 | |
| HL_7D63_022 | 1/SA/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_43074.18 | |
| HL_7D63_023 | 1/SA/1055:1064 | No text annotation Not in a motif group | ||
| HL_7D63_024 | 1/SA/1129:1139 | No text annotation Not in a motif group | ||
| HL_7D63_027 | 1/SA/1501:1506 | GNRA Not in a motif group | homologous HL_4V88_218 HL_43074.18 | |
| HL_7D63_028 | 1/SA/1550:1561 | No text annotation Not in a motif group | ||
| HL_7D63_029 | 1/SA/1594:1602 | No text annotation Not in a motif group | geometric HL_4OOG_001 HL_68529.2 | |
| HL_7D63_030 | 1/SA/1629:1636 | No text annotation Not in a motif group | ||
| HL_7D63_031 | 1/SA/1699:1703 | No text annotation Not in a motif group | ||
| HL_7D63_032 | 1/SA/1777:1784 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7D63_001 | No text annotation | ||
| HL_7D63_002 | No text annotation | ||
| HL_7D63_003 | No text annotation | ||
| HL_7D63_004 | No text annotation | ||
| HL_7D63_005 | No text annotation | ||
| HL_7D63_006 | No text annotation | ||
| HL_7D63_019 | No text annotation | ||
| HL_7D63_020 | No text annotation | ||
| HL_7D63_025 | No text annotation | ||
| HL_7D63_026 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7D63_001 | 1/3A/6:7, 1/SA/1117:1119 | Single bulged G Not in a motif group | geometric IL_3IGI_004 IL_59137.10 | |
| IL_7D63_002 | 1/3A/48:50, 1/5A/466:470 | No text annotation Not in a motif group | geometric IL_4V9F_053 IL_87332.1 | |
| IL_7D63_003 | 1/3A/78:85, 1/3A/325:329 | Kink-turn Not in a motif group | geometric IL_3NVI_002 IL_68057.1 | |
| IL_7D63_004 | 1/3A/96:98, 1/3A/317:320 | No text annotation Not in a motif group | ||
| IL_7D63_008 | 1/5A/497:499, 1/5A/539:542 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_01312.13 | |
| IL_7D63_009 | 1/5A/501:503, 1/5A/533:537 | No text annotation Not in a motif group | ||
| IL_7D63_013 | 1/SA/24:26, 1/SA/600:601 | Single bulged C Not in a motif group | geometric IL_7KGA_001 IL_61258.10 | |
| IL_7D63_014 | 1/SA/50:53, 1/SA/427:429 | No text annotation Not in a motif group | geometric IL_4N0T_004 IL_87332.1 | |
| IL_7D63_015 | 1/SA/58:63, 1/SA/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_96451.1 | |
| IL_7D63_016 | 1/SA/64:70, 1/SA/81:86 | Triple sheared related Not in a motif group | geometric IL_4V9F_018 IL_64879.1 | |
| IL_7D63_017 | 1/SA/109:112, 1/SA/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_85877.10 | |
| IL_7D63_018 | 1/SA/113:116, 1/SA/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_13730.12 | |
| IL_7D63_019 | 1/SA/117:122, 1/SA/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_76386.1 | |
| IL_7D63_020 | 1/SA/143:149, 1/SA/165:172 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_92440.5 | |
| IL_7D63_021 | 1/SA/150:152, 1/SA/162:164 | Isolated cWH basepair Not in a motif group | geometric IL_4KQ0_004 IL_42589.6 | |
| IL_7D63_022 | 1/SA/204:206, 1/SA/259:263 | No text annotation Not in a motif group | ||
| IL_7D63_023 | 1/SA/206:208, 1/SA/257:259 | No text annotation Not in a motif group | homologous IL_4V88_398 IL_01312.13 | |
| IL_7D63_024 | 1/SA/226:228, 1/SA/237:241 | No text annotation Not in a motif group | ||
| IL_7D63_025 | 1/SA/265:267, 1/SA/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_80007.16 | |
| IL_7D63_026 | 1/SA/270:274, 1/SA/282:285 | No text annotation Not in a motif group | ||
| IL_7D63_027 | 1/SA/311:316, 1/SA/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_29549.9 | |
| IL_7D63_028 | 1/SA/318:323, 1/SA/345:346 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_98882.3 | |
| IL_7D63_029 | 1/SA/389:391, 1/SA/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_42589.6 | |
| IL_7D63_030 | 1/SA/443:447, 1/SA/460:461 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_08376.2 | |
| IL_7D63_031 | 1/SA/447:448, 1/SA/458:460 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_59137.10 | |
| IL_7D63_032 | 1/SA/482:483, 1/SA/504:506 | Single bulged A Not in a motif group | homologous IL_4V88_409 IL_80007.16 | |
| IL_7D63_033 | 1/SA/514:516, 1/SA/536:543 | No text annotation Not in a motif group | ||
| IL_7D63_034 | 1/SA/517:520, 1/SA/532:535 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6JDV_001 IL_85877.10 | |
| IL_7D63_035 | 1/SA/551:552, 1/SA/584:587 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_44093.1 | |
| IL_7D63_036 | 1/SA/552:559, 1/SA/568:584 | No text annotation Not in a motif group | ||
| IL_7D63_037 | 1/SA/624:626, 1/SA/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_01312.13 | |
| IL_7D63_038 | 1/SA/627:631, 1/SA/969:972 | No text annotation Not in a motif group | ||
| IL_7D63_039 | 1/SA/631:632, 1/SA/967:969 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_04038.4 | |
| IL_7D63_040 | 1/SA/646:648, 1/SA/686:688 | No text annotation Not in a motif group | homologous IL_4V88_419 IL_01312.13 | |
| IL_7D63_041 | 1/SA/652:659, 1/SA/677:682 | No text annotation Not in a motif group | ||
| IL_7D63_042 | 1/SA/865:866, 1/SA/962:965 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_428 IL_70995.6 | |
| IL_7D63_043 | 1/SA/867:870, 1/SA/957:961 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_429 IL_85877.10 | |
| IL_7D63_044 | 1/SA/871:874, 1/SA/953:956 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_85877.10 | |
| IL_7D63_045 | 1/SA/874:878, 1/SA/950:953 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_85877.10 | |
| IL_7D63_046 | 1/SA/885:888, 1/SA/924:927 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_85877.10 | |
| IL_7D63_047 | 1/SA/893:899, 1/SA/910:919 | No text annotation Not in a motif group | homologous IL_5TBW_430 NA | |
| IL_7D63_048 | 1/SA/1033:1034, 1/SA/1083:1085 | Single bulged A Not in a motif group | geometric IL_5CNR_002 IL_66450.1 | |
| IL_7D63_049 | 1/SA/1035:1039, 1/SA/1079:1082 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_041 IL_85877.10 | |
| IL_7D63_050 | 1/SA/1041:1044, 1/SA/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_85877.10 | |
| IL_7D63_051 | 1/SA/1051:1053, 1/SA/1066:1067 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_72766.2 | |
| IL_7D63_052 | 1/SA/1157:1160, 1/SA/1617:1621 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.4 | |
| IL_7D63_053 | 1/SA/1173:1174, 1/SA/1464:1466 | Single stack bend Not in a motif group | geometric IL_7RQB_058 IL_31836.1 | |
| IL_7D63_054 | 1/SA/1174:1176, 1/SA/1463:1464 | Minor groove platform Not in a motif group | geometric IL_5TBW_039 IL_06437.11 | |
| IL_7D63_055 | 1/SA/1212:1216, 1/SA/1448:1451 | No text annotation Not in a motif group | ||
| IL_7D63_056 | 1/SA/1268:1270, 1/SA/1440:1441 | No text annotation Not in a motif group | ||
| IL_7D63_057 | 1/SA/1495:1498, 1/SA/1509:1512 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_461 IL_85877.10 | |
| IL_7D63_058 | 1/SA/1540:1545, 1/SA/1566:1571 | No text annotation Not in a motif group | homologous IL_4V88_462 IL_19954.1 | |
| IL_7D63_059 | 1/SA/1650:1652, 1/SA/1748:1750 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_01312.13 | |
| IL_7D63_060 | 1/SA/1653:1660, 1/SA/1741:1747 | No text annotation Not in a motif group | ||
| IL_7D63_061 | 1/SA/1664:1667, 1/SA/1734:1737 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5TBW_041 IL_85877.10 | |
| IL_7D63_062 | 1/SA/1669:1672, 1/SA/1729:1732 | Double sheared Not in a motif group | geometric IL_5BTP_004 IL_09705.7 | |
| IL_7D63_063 | 1/SA/1672:1674, 1/SA/1727:1729 | No text annotation Not in a motif group | homologous IL_4V88_472 IL_01312.13 | |
| IL_7D63_064 | 1/SA/1688:1690, 1/SA/1711:1713 | No text annotation Not in a motif group | ||
| IL_7D63_065 | 1/SA/1693:1695, 1/SA/1706:1708 | Isolated near basepair Not in a motif group | geometric IL_3NJ7_004 IL_42589.6 | |
| IL_7D63_066 | 1/SA/1696:1699, 1/SA/1703:1705 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7D63_005 | Kink-turn | ||
| IL_7D63_006 | No text annotation | ||
| IL_7D63_007 | Single bulged G | ||
| IL_7D63_010 | No text annotation | ||
| IL_7D63_011 | Single bulged U | ||
| IL_7D63_012 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7D63_002 | 1/SA/633:635, 1/SA/861:865, 1/SA/965:966 | No text annotation Not in a motif group | homologous J3_5TBW_047 NA | |
| J3_7D63_003 | 1/SA/881:884, 1/SA/928:936, 1/SA/943:947 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_7D63_004 | 1/SA/1150:1151, 1/SA/1627:1629, 1/SA/1636:1640 | No text annotation Not in a motif group | ||
| J3_7D63_005 | 1/SA/1168:1171, 1/SA/1468:1470, 1/SA/1574:1577 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_7D63_006 | 1/SA/1216:1220, 1/SA/1263:1268, 1/SA/1441:1448 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7D63_001 | No text annotation |
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