JAR3D
Query RF03064-CCF-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Rfam family RF03064 maps to one chain: 8IAZ|1|E See more about it at RNA 3D Hub by filtering on the chain or the Rfam family.
Loop 2 3-way junction loop
Column numbers: 14-20, 23-55, 129-131 - View nucleotides in PDB file(s)
Scored sequences and counts
A-CAAGA*U-------------------------------U*A-U 200
U-AUAUC*A-------------------------------C*G-G 83
U-AUAUC*A-------------------------------U*A-G 72
C-ACAGC*A-------------------------------C*G-G 43
C-AUAUC*A-------------------------------C*G-G 37
A-CAAGG*C-------------------------------U*A-U 34
C-AUAUC*A-------------------------------U*A-G 28
U-ACAUC*A-------------------------------C*G-G 26
U-ACAGC*A-------------------------------C*G-G 25
A-CAAGA*C-------------------------------U*A-U 24
U-AUACC*A-------------------------------C*G-G 24
A-CUAGA*U-------------------------------U*A-U 23
A-CAGGA*U-------------------------------U*A-U 19
U-AUAGC*A-------------------------------C*G-G 18
U-AUAGC*A-------------------------------U*A-G 15
C-AUACA*A-------------------------------U*A-G 14
U-ACAUC*A-------------------------------U*A-G 13
G-ACACC*A-------------------------------C*G-C 11
C-ACAUC*A-------------------------------C*G-G 10
C-ACAUC*A-------------------------------U*A-G 10
C-AUACC*A-------------------------------C*G-G 10
U-AUAUU*A-------------------------------C*G-G 10
U-AUAUC*A-------------------------------G*U-G 9
A-CACGA*U-------------------------------U*A-U 8
A-CUAGA*U-------------------------------U*G-U 8
G-AUACC*A-------------------------------C*G-C 8
U-AUAAC*A-------------------------------U*A-G 8
U-AUAUC*A-------------------------------C*G-A 8
A-CAAAA*A-------------------------------U*A-U 7
A-CCAGA*U-------------------------------U*A-U 7
C-ACACC*A-------------------------------U*A-G 7
U-ACACC*A-------------------------------U*A-G 7
U-AUACC*A-------------------------------U*A-G 7
A-AAAAC*A-------------------------------U*A-U 6
A-CAAAA*C-------------------------------U*A-U 6
A-GAAGA*U-------------------------------U*A-U 6
C-AUAAA*A-------------------------------C*G-G 6
C-AUAAA*A-------------------------------U*A-G 6
C-AUAAC*A-------------------------------U*A-G 6
A-AAAGA*A-------------------------------U*A-U 5
A-CAAAA*U-------------------------------U*A-U 5
A-CAUGA*U-------------------------------U*A-U 5
A-CAUGG*C-------------------------------U*A-U 5
A-CUUGA*U-------------------------------U*A-U 5
A-UACAA*A-------------------------------U*A-U 5
U-ACAAA*A-------------------------------C*G-A 5
U-ACACC*A-------------------------------C*G-G 5
ACUUAGG*C-------------------------------U*A-U 4
A-UAAAA*A-------------------------------U*A-U 4
C-AUACC*A-------------------------------U*A-G 4
G-AUACG*A-------------------------------C*G-C 4
U-ACACC*A-------------------------------C*G-A 4
U-AUACC*A-------------------------------C*G-A 4
U-AUAUC*A-------------------------------G*G-G 4
C-ACACC*C-------------------------------C*GGG 3
A-CUAGG*C-------------------------------U*A-U 3
C-AUAGC*A-------------------------------C*G-G 3
C-CUAUC*A-------------------------------C*G-G 3
G-AUAUC*A-------------------------------C*G-C 3
U-AGAUC*A-------------------------------C*G-G 3
U-AUAGA*A-------------------------------C*G-G 3
U-AUGUC*A-------------------------------C*G-G 3
U-CUAUC*A-------------------------------U*A-G 3
A-CAUAG*GUUCCAACAUUGGUUGUUCCAACAUUGGAACUU*A-U 2
C-AUAUC*AA------------------------------C*G-G 2
UAUAAUC*A-------------------------------C*G-A 2
A-AAAAC*U-------------------------------U*A-U 2
A-AGACC*A-------------------------------C*G-A 2
A-CAAGG*U-------------------------------U*A-U 2
A-CAAUA*U-------------------------------U*A-U 2
A-CACAA*A-------------------------------U*A-U 2
A-CAUAA*A-------------------------------U*A-U 2
A-CAUGA*C-------------------------------U*A-U 2
A-CGAGA*U-------------------------------U*A-U 2
A-CUAGA*A-------------------------------U*A-U 2
A-UAAGA*U-------------------------------U*A-U 2
A-UACAA*U-------------------------------U*A-U 2
A-UAUAA*A-------------------------------U*A-U 2
C-AAAAA*A-------------------------------C*G-G 2
C-ACACC*A-------------------------------C*G-G 2
C-AUAAC*A-------------------------------C*G-G 2
C-GUAUC*A-------------------------------C*G-G 2
G-ACACG*A-------------------------------C*G-C 2
U-AAACC*A-------------------------------C*G-G 2
U-AAAGC*A-------------------------------C*G-G 2
U-AAAUC*A-------------------------------C*G-G 2
U-AAGCC*A-------------------------------C*G-G 2
U-AGAAC*A-------------------------------C*G-G 2
U-AUAAC*A-------------------------------C*G-G 2
U-AUAGU*A-------------------------------U*A-G 2
U-AUAUA*A-------------------------------C*G-G 2
U-AUAUA*A-------------------------------G*U-G 2
U-AUAUC*A-------------------------------C*A-G 2
U-AUAUC*A-------------------------------U*G-G 2
U-CUACC*A-------------------------------U*A-G 2
U-GCACC*A-------------------------------C*G-A 2
U-GCAUC*A-------------------------------C*G-G 2
U-GUAAG*A-------------------------------U*U-G 2
U-GUAUC*A-------------------------------C*G-A 2
U-GUAUC*A-------------------------------C*G-G 2
A-CAUAG*GUUCCA-ACAU--------------UGGAACUU*A-U 1
A-CAUUG*GUUCCA----ACAU-----------UGGAACUU*A-U 1
C-AAACA*A--------------------GUA--------C*G-G 1
U-AUAUC*C------AA----------------------AC*G-G 1
CAUACUC*A------------------------------CC*G-G 1
U-UUAUA*A-------AA----------------------C*A-G 1
U-UUAUA*AAA-----------------------------C*A-G 1
A-CUUAG*U------------------------------CU*A-U 1
A-CUUAG*UC------------------------------U*A-U 1
A-CUUUG*UC------------------------------U*A-U 1
A-UAAAA*A------------------------------AU*A-U 1
C-AUAAA*A------------------------------AC*G-G 1
C-AUAUC*A-------------------------------C*GGG 1
U-AUAAA*AA------------------------------C*G-A 1
U-AUAGA*AA------------------------------C*G-G 1
U-AUAGC*A-------------------------------C*GGA 1
U-AUAUA*AA------------------------------C*G-G 1
U-AUAUC*A------------------------------AC*G-G 1
UUACAUC*A-------------------------------C*G-G 1
A-AAAAC*A-------------------------------G*A-U 1
A-AAAGA*U-------------------------------U*A-U 1
A-AUAAC*A-------------------------------U*A-G 1
A-AUAGA*U-------------------------------U*A-U 1
A-CAACA*U-------------------------------U*A-U 1
A-CAAGA*C-------------------------------A*A-U 1
A-CAAGU*U-------------------------------U*A-U 1
A-CAAUA*C-------------------------------U*A-U 1
A-CACAA*C-------------------------------U*A-U 1
A-CAGGA*C-------------------------------U*A-U 1
A-CAGGG*C-------------------------------U*A-U 1
A-CGUGA*U-------------------------------U*A-U 1
A-CUCGA*U-------------------------------U*A-U 1
A-CUGGA*U-------------------------------U*A-U 1
A-CUUGA*A-------------------------------U*A-U 1
A-CUUGA*U-------------------------------U*G-U 1
A-GAAGA*U-------------------------------U*G-U 1
A-GAUGA*U-------------------------------U*A-U 1
A-UAAGG*C-------------------------------U*A-U 1
A-UAGGA*A-------------------------------U*A-U 1
A-UUAGA*U-------------------------------U*G-U 1
C-AAACA*A-------------------------------A*G-G 1
C-ACACA*A-------------------------------C*G-G 1
C-ACAUC*A-------------------------------C*A-G 1
C-AUAUC*A-------------------------------U*A-C 1
C-AUAUC*A-------------------------------U*G-G 1
C-AUAUU*A-------------------------------U*A-G 1
C-AUGCA*A-------------------------------U*A-G 1
C-AUGCC*A-------------------------------U*A-G 1
C-GAAAA*A-------------------------------C*G-G 1
C-GCAUC*A-------------------------------C*G-G 1
C-GGACC*A-------------------------------C*G-G 1
C-GUAAC*A-------------------------------C*G-G 1
G-ACGCC*A-------------------------------C*G-C 1
G-AUACA*A-------------------------------C*G-C 1
G-UGACC*G-------------------------------C*G-G 1
U-AAAAC*A-------------------------------C*G-G 1
U-AAAUC*A-------------------------------A*U-G 1
U-AAUAU*A-------------------------------C*G-A 1
U-ACAAC*A-------------------------------C*G-G 1
U-ACACA*A-------------------------------U*A-G 1
U-ACAGC*A-------------------------------U*A-G 1
U-ACAGU*A-------------------------------C*G-G 1
U-ACAUA*A-------------------------------C*G-G 1
U-ACAUC*A-------------------------------C*G-A 1
U-ACAUU*A-------------------------------C*G-A 1
U-ACCCC*A-------------------------------C*G-G 1
U-ACGCC*A-------------------------------C*G-A 1
U-AGAGC*A-------------------------------C*G-G 1
U-AGAUC*A-------------------------------U*A-G 1
U-AUAAC*A-------------------------------C*G-A 1
U-AUAAG*A-------------------------------C*G-G 1
U-AUAAG*A-------------------------------G*U-G 1
U-AUAAG*A-------------------------------U*U-G 1
U-AUAAU*A-------------------------------U*A-G 1
U-AUACA*A-------------------------------C*G-A 1
U-AUACA*A-------------------------------U*A-G 1
U-AUACC*A-------------------------------G*G-G 1
U-AUACC*A-------------------------------G*U-G 1
U-AUACC*A-------------------------------U*A-A 1
U-AUACU*A-------------------------------U*A-A 1
U-AUAUA*G-------------------------------C*G-A 1
U-AUAUC*A-------------------------------C*G-C 1
U-AUAUC*A-------------------------------U*U-G 1
U-AUAUU*A-------------------------------C*G-A 1
U-AUAUU*A-------------------------------U*A-G 1
U-AUGAC*A-------------------------------C*G-G 1
U-AUGAC*A-------------------------------U*A-G 1
U-AUGCC*A-------------------------------C*G-A 1
U-AUGCC*A-------------------------------U*A-G 1
U-AUGGC*A-------------------------------C*G-G 1
U-AUUUG*C-------------------------------C*G-A 1
U-CUAUC*A-------------------------------C*G-A 1
U-GCAUC*A-------------------------------U*A-G 1
U-GUAUC*A-------------------------------C*A-G 1
U-GUAUC*A-------------------------------G*G-G 1
U-UAUAC*A-------------------------------C*G-A 1
A-AAU--*-------------------------------GC*G-U 1
C-AAA--*A-------------------------------U*A-G 1
C-AUA--*A-------------------------------U*A-G 1
U-AAA--*A-------------------------------C*G-A 1
U-----U*-------------------------------UC*G-G 1
Omitted sequenced and counts
U-AUACA*--------------------------------C*G-G 30
U-AUAUA*--------------------------------C*G-G 27
U-AUACA*--------------------------------C*G-A 20
C-AUACA*--------------------------------C*G-G 13
U-ACAUA*--------------------------------C*G-G 11
C-AAACA*--------------------------------C*G-G 10
A-CAAAA*--------------------------------U*A-U 8
C-AAAGA*--------------------------------C*G-G 7
C-AUAUC*--------------------------------C*G-G 7
U-ACACA*--------------------------------C*G-G 6
C-ACACC*--------------------------------C*G-G 5
U-AUAAA*--------------------------------C*G-A 5
U-UAAUA*--------------------------------C*G-G 5
C-AAGGA*--------------------------------C*G-G 4
C-AUAAA*--------------------------------U*A-G 4
C-AAAAA*--------------------------------C*G-G 3
C-ACAUC*--------------------------------C*G-G 3
C-ACUCA*--------------------------------C*G-G 3
C-AUACA*--------------------------------U*A-G 3
C-AUACC*--------------------------------C*G-G 3
C-GGACA*--------------------------------C*G-G 3
U-AAGAA*--------------------------------U*A-A 3
U-AAGAC*--------------------------------U*A-A 3
U-AUAUA*--------------------------------C*G-A 3
U-GUACA*--------------------------------C*G-A 3
A-AAACA*--------------------------------U*A-U 2
A-UAAAA*--------------------------------U*A-U 2
C-AAAAC*--------------------------------C*G-G 2
C-AAACA*--------------------------------U*A-G 2
C-AAUCA*--------------------------------C*G-G 2
C-ACACA*--------------------------------C*G-G 2
C-ACAUA*--------------------------------C*G-G 2
C-AUAUA*--------------------------------C*G-G 2
C-GAAAA*--------------------------------C*G-G 2
G-AAACC*--------------------------------C*G-A 2
G-AGACA*--------------------------------C*G-C 2
U-AAACA*--------------------------------C*G-A 2
U-AAGAA*--------------------------------C*G-A 2
U-AAGCA*--------------------------------C*G-A 2
U-ACACC*--------------------------------C*G-A 2
U-ACAUA*--------------------------------C*G-A 2
U-AGACC*--------------------------------C*G-A 2
U-AUAAA*--------------------------------C*G-G 2
U-GCACA*--------------------------------C*G-A 2
A-CACGA*U-------------------------------U*A-N 1
A-AAAAG*--------------------------------U*A-U 1
A-AGUUU*--------------------------------U*G-U 1
A-CAAGC*--------------------------------U*A-U 1
A-GAAGA*--------------------------------U*A-U 1
C-AAACA*--------------------------------A*G-G 1
C-AAACA*--------------------------------C*A-G 1
C-AAAGC*--------------------------------C*G-G 1
C-AAAUA*--------------------------------C*G-G 1
C-AACCA*--------------------------------C*G-G 1
C-AACGA*--------------------------------C*G-G 1
C-AAGAC*--------------------------------C*G-G 1
C-ACACA*--------------------------------U*A-G 1
C-ACCCC*--------------------------------C*G-G 1
C-ACGCA*--------------------------------C*G-G 1
C-AGACA*--------------------------------C*G-G 1
C-ANACA*--------------------------------C*G-G 1
C-AUAAA*--------------------------------C*G-G 1
C-AUACC*--------------------------------U*G-G 1
C-AUACG*--------------------------------C*G-G 1
C-GCAUC*--------------------------------C*G-G 1
C-GUACU*--------------------------------C*A-G 1
G-AUGAG*--------------------------------C*G-C 1
U-AAAAC*--------------------------------C*G-A 1
U-AAAAC*--------------------------------U*A-A 1
U-AAAAU*--------------------------------C*G-A 1
U-AAACA*--------------------------------C*G-G 1
U-AAACA*--------------------------------U*A-A 1
U-AAACA*--------------------------------U*A-G 1
U-AAAUA*--------------------------------C*G-G 1
U-AACCA*--------------------------------C*G-A 1
U-AAGAC*--------------------------------C*G-A 1
U-AAGAC*--------------------------------U*A-G 1
U-ACAAA*--------------------------------C*G-A 1
U-ACAAC*--------------------------------C*G-A 1
U-ACACA*--------------------------------U*G-G 1
U-ACAGA*--------------------------------C*G-A 1
U-ACAUC*--------------------------------C*G-G 1
U-ACGAA*--------------------------------C*G-A 1
U-AUACA*--------------------------------U*G-A 1
U-AUAUA*--------------------------------C*U-A 1
U-AUAUC*--------------------------------C*G-G 1
U-AUAUC*--------------------------------U*A-G 1
U-AUCUA*--------------------------------C*G-G 1
U-AUGAA*--------------------------------C*G-A 1
U-GAACG*--------------------------------C*G-A 1
U-GUAAA*--------------------------------C*G-A 1
U-GUAAC*--------------------------------C*G-A 1
U-GUACA*--------------------------------U*A-G 1
U-GUAUA*--------------------------------C*G-G 1
U-GUGCA*--------------------------------C*G-A 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group J3_11375.2
Basepair signature:
|
30.03 | -46.34 | 6 | 2 |
|
| 2 |
Motif group J3_47376.1
Basepair signature:
|
4.13 | -62.92 | 8 | 4 |
|
| 3 |
Motif group J3_47324.1
Basepair signature:
|
2.28 | -73.63 | 9 | 5 |
|
| 4 |
Motif group J3_12003.2
Basepair signature:
|
1.58 | -126.42 | 6 | 2 |
|
| 5 |
Motif group J3_70599.1
Basepair signature:
|
0.35 | -119.34 | 7 | 3 |
|
| 6 |
Motif group J3_10118.1
Basepair signature:
|
0.35 | -9999.00 | 7 | 4 |
|
| 7 |
Motif group J3_41486.2
Basepair signature:
|
0.26 | -89.86 | 6 | 2 |
|
| 8 |
Motif group J3_26675.1
Basepair signature:
|
0.18 | -87.14 | 8 | 3 |
|
| 9 |
Motif group J3_01052.1
Basepair signature:
|
0.09 | -74.28 | 8 | 5 |
|
| 10 |
Motif group J3_61124.2
Basepair signature:
|
0.09 | -93.11 | 6 | 4 |
|
| 11 |
Motif group J3_24127.1
Basepair signature:
|
0.09 | -224.47 | 9 | 5 |
|
| 12 |
Motif group J3_92705.1
Basepair signature:
|
0.00 | -72.87 | 9 | 5 |
|
| 13 |
Motif group J3_45941.1
Basepair signature:
|
0.00 | -76.88 | 11 | 8 |
|
| 14 |
Motif group J3_31041.1
Basepair signature:
|
0.00 | -84.21 | 8 | 4 |
|
| 15 |
Motif group J3_75962.2
Basepair signature:
|
0.00 | -97.45 | 6 | 2 |
|
| 16 |
Motif group J3_37089.1
Basepair signature:
|
0.00 | -98.42 | 8 | 5 |
|
| 17 |
Motif group J3_35667.2
Basepair signature:
|
0.00 | -102.02 | 8 | 5 |
|
| 18 |
Motif group J3_67856.4
Basepair signature:
|
0.00 | -104.30 | 7 | 4 |
|
| 19 |
Motif group J3_83332.1
Basepair signature:
|
0.00 | -111.18 | 11 | 6 |
|
| 20 |
Motif group J3_31965.2
Basepair signature:
|
0.00 | -113.37 | 9 | 5 |
|
| 21 |
Motif group J3_82572.1
Basepair signature:
|
0.00 | -115.30 | 9 | 5 |
|
| 22 |
Motif group J3_51910.1
Basepair signature:
|
0.00 | -117.22 | 8 | 4 |
|
| 23 |
Motif group J3_33494.1
Basepair signature:
|
0.00 | -123.63 | 9 | 4 |
|
| 24 |
Motif group J3_76043.3
Basepair signature:
|
0.00 | -130.32 | 8 | 4 |
|
| 25 |
Motif group J3_19545.2
Basepair signature:
|
0.00 | -133.04 | 8 | 5 |
|
| 26 |
Motif group J3_19286.1
Basepair signature:
|
0.00 | -137.13 | 10 | 8 |
|
| 27 |
Motif group J3_55773.1
Basepair signature:
|
0.00 | -137.53 | 11 | 6 |
|
| 28 |
Motif group J3_89095.1
Basepair signature:
|
0.00 | -140.92 | 11 | 8 |
|
| 29 |
Motif group J3_00210.1
Basepair signature:
|
0.00 | -142.91 | 11 | 7 |
|
| 30 |
Motif group J3_97642.1
Basepair signature:
|
0.00 | -142.96 | 9 | 6 |
|
| 31 |
Motif group J3_36821.1
Basepair signature:
|
0.00 | -146.49 | 8 | 5 |
|
| 32 |
Motif group J3_98798.1
Basepair signature:
|
0.00 | -146.95 | 10 | 6 |
|
| 33 |
Motif group J3_56052.5
Basepair signature:
|
0.00 | -147.54 | 7 | 3 |
|
| 34 |
Motif group J3_04521.1
Basepair signature:
|
0.00 | -151.55 | 9 | 5 |
|
| 35 |
Motif group J3_22198.1
Basepair signature:
|
0.00 | -152.35 | 7 | 5 |
|
| 36 |
Motif group J3_11934.4
Basepair signature:
|
0.00 | -152.72 | 10 | 6 |
|
| 37 |
Motif group J3_81015.1
Basepair signature:
|
0.00 | -153.25 | 8 | 5 |
|
| 38 |
Motif group J3_58090.1
Basepair signature:
|
0.00 | -154.28 | 9 | 6 |
|
| 39 |
Motif group J3_41097.1
Basepair signature:
|
0.00 | -156.85 | 8 | 4 |
phi29 pRNA |
| 40 |
Motif group J3_98484.1
Basepair signature:
|
0.00 | -157.18 | 11 | 8 |
|
| 41 |
Motif group J3_80578.1
Basepair signature:
|
0.00 | -157.54 | 8 | 3 |
|
| 42 |
Motif group J3_72012.1
Basepair signature:
|
0.00 | -158.21 | 11 | 8 |
|
| 43 |
Motif group J3_80708.1
Basepair signature:
|
0.00 | -159.73 | 8 | 4 |
|
| 44 |
Motif group J3_58957.1
Basepair signature:
|
0.00 | -161.47 | 12 | 9 |
|
| 45 |
Motif group J3_62630.1
Basepair signature:
|
0.00 | -165.44 | 8 | 5 |
|
| 46 |
Motif group J3_71677.1
Basepair signature:
|
0.00 | -167.87 | 9 | 6 |
|
| 47 |
Motif group J3_88257.1
Basepair signature:
|
0.00 | -170.08 | 12 | 9 |
|
| 48 |
Motif group J3_44724.7
Basepair signature:
|
0.00 | -171.81 | 9 | 5 |
|
| 49 |
Motif group J3_32030.1
Basepair signature:
|
0.00 | -173.93 | 11 | 7 |
|
| 50 |
Motif group J3_20650.1
Basepair signature:
|
0.00 | -174.75 | 10 | 7 |
|
| 51 |
Motif group J3_32852.6
Basepair signature:
|
0.00 | -175.33 | 9 | 5 |
|
| 52 |
Motif group J3_45482.1
Basepair signature:
|
0.00 | -175.72 | 12 | 9 |
|
| 53 |
Motif group J3_94652.1
Basepair signature:
|
0.00 | -175.93 | 9 | 4 |
|
| 54 |
Motif group J3_20574.1
Basepair signature:
|
0.00 | -176.04 | 11 | 6 |
|
| 55 |
Motif group J3_89737.1
Basepair signature:
|
0.00 | -176.40 | 11 | 9 |
5S rRNA junction |
| 56 |
Motif group J3_12393.2
Basepair signature:
|
0.00 | -176.40 | 9 | 5 |
|
| 57 |
Motif group J3_79369.1
Basepair signature:
|
0.00 | -179.87 | 9 | 5 |
|
| 58 |
Motif group J3_25217.1
Basepair signature:
|
0.00 | -180.96 | 9 | 5 |
|
| 59 |
Motif group J3_30478.1
Basepair signature:
|
0.00 | -183.13 | 7 | 3 |
|
| 60 |
Motif group J3_68164.1
Basepair signature:
|
0.00 | -185.58 | 11 | 8 |
|
| 61 |
Motif group J3_21998.1
Basepair signature:
|
0.00 | -187.26 | 10 | 8 |
|
| 62 |
Motif group J3_28315.1
Basepair signature:
|
0.00 | -188.06 | 8 | 5 |
|
| 63 |
Motif group J3_76375.1
Basepair signature:
|
0.00 | -188.09 | 11 | 9 |
|
| 64 |
Motif group J3_96372.2
Basepair signature:
|
0.00 | -191.34 | 12 | 9 |
|
| 65 |
Motif group J3_14360.1
Basepair signature:
|
0.00 | -193.38 | 7 | 4 |
|
| 66 |
Motif group J3_36387.1
Basepair signature:
|
0.00 | -194.80 | 11 | 8 |
|
| 67 |
Motif group J3_53439.1
Basepair signature:
|
0.00 | -196.06 | 11 | 8 |
|
| 68 |
Motif group J3_97609.1
Basepair signature:
|
0.00 | -196.86 | 12 | 8 |
|
| 69 |
Motif group J3_07845.1
Basepair signature:
|
0.00 | -197.56 | 6 | 3 |
|
| 70 |
Motif group J3_01425.1
Basepair signature:
|
0.00 | -197.82 | 10 | 5 |
|
| 71 |
Motif group J3_41596.1
Basepair signature:
|
0.00 | -198.32 | 14 | 10 |
|
| 72 |
Motif group J3_89044.1
Basepair signature:
|
0.00 | -198.33 | 10 | 7 |
|
| 73 |
Motif group J3_83726.1
Basepair signature:
|
0.00 | -200.98 | 13 | 9 |
|
| 74 |
Motif group J3_76911.2
Basepair signature:
|
0.00 | -201.49 | 9 | 5 |
|
| 75 |
Motif group J3_23373.1
Basepair signature:
|
0.00 | -203.25 | 12 | 9 |
|
| 76 |
Motif group J3_65990.1
Basepair signature:
|
0.00 | -204.31 | 10 | 8 |
|
| 77 |
Motif group J3_15893.1
Basepair signature:
|
0.00 | -207.61 | 8 | 6 |
C-di-AMP riboswitch |
| 78 |
Motif group J3_99563.1
Basepair signature:
|
0.00 | -210.45 | 13 | 11 |
|
| 79 |
Motif group J3_44961.1
Basepair signature:
|
0.00 | -210.71 | 11 | 10 |
|
| 80 |
Motif group J3_21426.1
Basepair signature:
|
0.00 | -211.26 | 13 | 10 |
|
| 81 |
Motif group J3_06335.1
Basepair signature:
|
0.00 | -212.81 | 12 | 8 |
|
| 82 |
Motif group J3_72575.1
Basepair signature:
|
0.00 | -213.82 | 8 | 6 |
|
| 83 |
Motif group J3_98379.3
Basepair signature:
|
0.00 | -214.45 | 11 | 8 |
|
| 84 |
Motif group J3_93637.1
Basepair signature:
|
0.00 | -215.02 | 11 | 8 |
|
| 85 |
Motif group J3_87797.1
Basepair signature:
|
0.00 | -215.39 | 13 | 10 |
|
| 86 |
Motif group J3_94999.1
Basepair signature:
|
0.00 | -218.71 | 9 | 6 |
|
| 87 |
Motif group J3_84052.1
Basepair signature:
|
0.00 | -218.86 | 12 | 9 |
|
| 88 |
Motif group J3_32857.1
Basepair signature:
|
0.00 | -219.28 | 13 | 9 |
|
| 89 |
Motif group J3_89368.5
Basepair signature:
|
0.00 | -225.21 | 11 | 7 |
|
| 90 |
Motif group J3_28621.5
Basepair signature:
|
0.00 | -229.11 | 7 | 5 |
|
| 91 |
Motif group J3_34864.2
Basepair signature:
|
0.00 | -230.37 | 11 | 7 |
|
| 92 |
Motif group J3_64189.2
Basepair signature:
|
0.00 | -230.50 | 9 | 6 |
|
| 93 |
Motif group J3_71753.1
Basepair signature:
|
0.00 | -231.86 | 14 | 11 |
|
| 94 |
Motif group J3_76475.2
Basepair signature:
|
0.00 | -233.15 | 13 | 10 |
|
| 95 |
Motif group J3_85054.4
Basepair signature:
|
0.00 | -234.25 | 11 | 8 |
|
| 96 |
Motif group J3_99595.1
Basepair signature:
|
0.00 | -236.23 | 8 | 4 |
|
| 97 |
Motif group J3_47707.1
Basepair signature:
|
0.00 | -237.64 | 13 | 11 |
|
| 98 |
Motif group J3_46299.2
Basepair signature:
|
0.00 | -238.36 | 12 | 10 |
|
| 99 |
Motif group J3_93059.1
Basepair signature:
|
0.00 | -239.51 | 8 | 5 |
|
| 100 |
Motif group J3_69441.1
Basepair signature:
|
0.00 | -240.70 | 13 | 11 |
|
| 101 |
Motif group J3_44163.2
Basepair signature:
|
0.00 | -246.99 | 12 | 11 |
|
| 102 |
Motif group J3_83592.1
Basepair signature:
|
0.00 | -247.16 | 13 | 11 |
|
| 103 |
Motif group J3_64069.1
Basepair signature:
|
0.00 | -247.21 | 11 | 9 |
|
| 104 |
Motif group J3_07703.1
Basepair signature:
|
0.00 | -247.81 | 11 | 8 |
|
| 105 |
Motif group J3_38881.1
Basepair signature:
|
0.00 | -248.80 | 13 | 10 |
|
| 106 |
Motif group J3_04315.1
Basepair signature:
|
0.00 | -256.44 | 14 | 12 |
|
| 107 |
Motif group J3_38151.1
Basepair signature:
|
0.00 | -258.89 | 9 | 6 |
|
| 108 |
Motif group J3_20992.1
Basepair signature:
|
0.00 | -263.26 | 14 | 11 |
|
| 109 |
Motif group J3_75408.1
Basepair signature:
|
0.00 | -263.85 | 14 | 12 |
|
| 110 |
Motif group J3_52655.4
Basepair signature:
|
0.00 | -270.51 | 9 | 7 |
|
| 111 |
Motif group J3_08394.3
Basepair signature:
|
0.00 | -272.09 | 14 | 12 |
|
| 112 |
Motif group J3_45099.1
Basepair signature:
|
0.00 | -274.68 | 13 | 10 |
|
| 113 |
Motif group J3_97971.2
Basepair signature:
|
0.00 | -274.83 | 12 | 8 |
|
| 114 |
Motif group J3_44792.1
Basepair signature:
|
0.00 | -277.25 | 15 | 12 |
|
| 115 |
Motif group J3_58525.1
Basepair signature:
|
0.00 | -279.36 | 15 | 12 |
|
| 116 |
Motif group J3_32601.5
Basepair signature:
|
0.00 | -284.77 | 9 | 6 |
|
| 117 |
Motif group J3_17385.4
Basepair signature:
|
0.00 | -288.05 | 10 | 7 |
|
| 118 |
Motif group J3_59914.1
Basepair signature:
|
0.00 | -289.83 | 7 | 5 |
|
| 119 |
Motif group J3_88233.1
Basepair signature:
|
0.00 | -290.13 | 13 | 10 |
|
| 120 |
Motif group J3_36499.1
Basepair signature:
|
0.00 | -292.83 | 11 | 8 |
|
| 121 |
Motif group J3_22899.1
Basepair signature:
|
0.00 | -293.86 | 15 | 13 |
|
| 122 |
Motif group J3_37047.6
Basepair signature:
|
0.00 | -295.38 | 14 | 12 |
|
| 123 |
Motif group J3_00458.1
Basepair signature:
|
0.00 | -299.99 | 17 | 14 |
|
| 124 |
Motif group J3_25303.4
Basepair signature:
|
0.00 | -300.59 | 13 | 10 |
|
| 125 |
Motif group J3_82365.4
Basepair signature:
|
0.00 | -303.45 | 8 | 6 |
|
| 126 |
Motif group J3_59706.1
Basepair signature:
|
0.00 | -320.06 | 14 | 13 |
|
| 127 |
Motif group J3_41339.1
Basepair signature:
|
0.00 | -324.50 | 16 | 14 |
|
| 128 |
Motif group J3_46317.4
Basepair signature:
|
0.00 | -327.64 | 13 | 11 |
|
| 129 |
Motif group J3_39320.1
Basepair signature:
|
0.00 | -332.57 | 16 | 14 |
|
| 130 |
Motif group J3_65403.1
Basepair signature:
|
0.00 | -337.82 | 15 | 15 |
|
| 131 |
Motif group J3_30104.1
Basepair signature:
|
0.00 | -338.01 | 7 | 4 |
|
| 132 |
Motif group J3_01596.1
Basepair signature:
|
0.00 | -344.73 | 17 | 15 |
|
| 133 |
Motif group J3_97280.1
Basepair signature:
|
0.00 | -348.86 | 14 | 13 |
|
| 134 |
Motif group J3_05216.1
Basepair signature:
|
0.00 | -359.51 | 10 | 6 |
|
| 135 |
Motif group J3_68440.1
Basepair signature:
|
0.00 | -368.39 | 17 | 13 |
|
| 136 |
Motif group J3_83516.4
Basepair signature:
|
0.00 | -390.44 | 18 | 17 |
|
| 137 |
Motif group J3_77951.1
Basepair signature:
|
0.00 | -390.71 | 16 | 14 |
|
| 138 |
Motif group J3_51249.1
Basepair signature:
|
0.00 | -391.67 | 11 | 9 |
|
| 139 |
Motif group J3_61367.1
Basepair signature:
|
0.00 | -392.56 | 18 | 17 |
|
| 140 |
Motif group J3_19664.1
Basepair signature:
|
0.00 | -412.67 | 19 | 17 |
|
| 141 |
Motif group J3_90186.1
Basepair signature:
|
0.00 | -427.96 | 19 | 16 |
|
| 142 |
Motif group J3_17791.2
Basepair signature:
|
0.00 | -434.73 | 17 | 16 |
|
| 143 |
Motif group J3_38098.1
Basepair signature:
|
0.00 | -439.35 | 19 | 18 |
|
| 144 |
Motif group J3_93261.1
Basepair signature:
|
0.00 | -461.30 | 21 | 19 |
|
| 145 |
Motif group J3_69466.1
Basepair signature:
|
0.00 | -465.11 | 20 | 18 |
|
| 146 |
Motif group J3_10708.1
Basepair signature:
|
0.00 | -482.85 | 18 | 14 |
|
| 147 |
Motif group J3_30040.2
Basepair signature:
|
0.00 | -484.45 | 18 | 16 |
|
| 148 |
Motif group J3_09667.1
Basepair signature:
|
0.00 | -492.66 | 11 | 8 |
|
| 149 |
Motif group J3_74474.1
Basepair signature:
|
0.00 | -496.92 | 21 | 18 |
|
| 150 |
Motif group J3_46124.1
Basepair signature:
|
0.00 | -498.00 | 21 | 20 |
|
| 151 |
Motif group J3_60031.2
Basepair signature:
|
0.00 | -499.07 | 7 | 4 |
|
| 152 |
Motif group J3_08040.1
Basepair signature:
|
0.00 | -582.21 | 24 | 22 |
|
| 153 |
Motif group J3_65214.1
Basepair signature:
|
0.00 | -585.56 | 21 | 21 |
|
| 154 |
Motif group J3_58429.1
Basepair signature:
|
0.00 | -602.05 | 25 | 23 |
|
| 155 |
Motif group J3_28460.1
Basepair signature:
|
0.00 | -664.93 | 27 | 26 |
|
| 156 |
Motif group J3_92134.2
Basepair signature:
|
0.00 | -705.54 | 21 | 19 |
|
| 157 |
Motif group J3_75076.1
Basepair signature:
|
0.00 | -718.83 | 29 | 27 |
|
| 158 |
Motif group J3_24879.1
Basepair signature:
|
0.00 | -742.69 | 22 | 21 |
|
| 159 |
Motif group J3_33327.1
Basepair signature:
|
0.00 | -747.20 | 29 | 27 |
|
| 160 |
Motif group J3_08158.1
Basepair signature:
|
0.00 | -833.45 | 32 | 31 |
|
| 161 |
Motif group J3_13378.1
Basepair signature:
|
0.00 | -871.99 | 33 | 32 |
|
| 162 |
Motif group J3_03190.1
Basepair signature:
|
0.00 | -9999.00 | 24 | 22 |
|
| 163 |
Motif group J3_28639.1
Basepair signature:
|
0.00 | -9999.00 | 21 | 20 |
|
| 164 |
Motif group J3_46173.1
Basepair signature:
|
0.00 | -9999.00 | 16 | 12 |
|
| 165 |
Motif group J3_63687.1
Basepair signature:
|
0.00 | -9999.00 | 17 | 13 |
|