JAR3D
Query RF03087-CCF-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Rfam family RF03087 maps to these 30 chains: 9ISV|1|A, 9J3R|1|A, 9J3R|1|B, 9J3R|1|C, 9J3R|1|D, 9J3T|1|A, 9J3T|1|B, 9J3T|1|C, 9J3T|1|D, 9J3T|1|E, 9J3T|1|F, 9J3T|1|G, 9J3T|1|H, 9MM6|1|A, 9MM6|1|E, 9MM6|1|I, 9MM6|1|M, 9MM6|1|Q, 9MM6|1|U, 9MM6|1|Y, 9MM6|1|c, 9MME|1|U, 9MME|1|Y, 9MME|1|c, 9MME|1|g, 9MME|1|k, 9MME|1|o, 9MME|1|s, 9MME|1|w, 9MMG|1|c See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.
Loop 36 Internal loop
Column numbers: 848-945, 951-969 - View nucleotides in PDB file(s)
Scored sequences and counts
AAU--CCA*CCAGAUUAAAUUAUGAAUA---------------------------------------------------------------CCAAAUUC*G-----------------C 12
AAAU-GUG*CAGAUAAAACAUUUGGAUAUGUUUAUGCUUAAAA------------------------------------------------UAUAUUUC*G-----------------U 6
AAUC-UUG*GUUUACAAGAAUAUUCUUAAUUAUUUACUAGAAGA-----------------------------------------------AAAUAAUC*G-----------------A 5
GA---GAC*AGGUUCUGAGUCAGGAAAAAUAAGAUCACAGA--------------------------------------------------ACAAAUGC*AG----------------U 5
GA---GUG*CGUAGAGGAACGAUUUCUACAGAUAACGAAGCUAACAGGAAAUU--------------------------------------AUUAGAUC*G-----------------A 4
GA---GAC*AGGUUCUGAGUCAGAAAAAGGAAGAUCACAGA--------------------------------------------------ACAAAUGC*AG----------------U 4
GA---GAC*AGUUCUAUAAUGACAAGAAGAUCGUCAGG-----------------------------------------------------AAAACUGC*AG----------------U 4
A-----GG*CGAUUUUACAAAUCAAGAAUAAUUGGUAAU----------------------------------------------------UCUAAUGC*G-----------------A 4
AU---GAC*GGGUUUGAAGAUGAUCUUUUCUAUAUCAAAUAUGGAUUUUGUAAAAG-----------------------------------AAAAUUUC*G-----------------A 3
A----UAC*CAAAAGUUAUACUGGUCUUGAAAACCAGAGAUAGAAAA--------------------------------------------CAUUUUUC*G-----------------A 3
AAU--GUG*CAGAUGAACGAUACUGAUAUUGUUAUGCUAAAAC------------------------------------------------AAAUAUUC*G-----------------U 3
AU---GGC*AGUUUUAAAAAGCAAUCUUUCGAUACGAGCAUAUGAGAAUAAGGAAAUGCAAAUAGGCGAAA--------------------GCAUAAUC*G-----------------A 2
AG---GAC*AGUUUUGGUGUUUGAUCUUUAAUACGAUAUGAUGAAAAAGAAAUUGUAUGAAACUAUC------------------------AAAUUUUC*G-----------------A 2
AGC--GUG*UUCAGUUCUAAACUAGACUGGAAAGAUCCGCACAAGUAGAAUGCGAAAAACUCUA---------------------------UUUUUGAC*G-----------------G 2
A----GGU*AGUCAUAAUAGAAUGUAUAUUUUAAUUAAAACUACAUAUGAAAUUACAGUAUAUU---------------------------AAUGAUUC*G-----------------A 2
AG---CUA*CAGCAUAUUGACUAAUUAAUGGCUCGUGAAAGAGCGAAAUGAAAAGA-----------------------------------AAAUUUGC*G-----------------A 2
AU---GGC*AAGUUGAUGAAAAUAAAGCGAAUAGGUGUAAGAUGCAACUA-----------------------------------------UGAUAUUC*G-----------------A 2
AAUC-UUG*GUUUACAAGAAUAUUCUUAAUUAUUUGAUAGAAGA-----------------------------------------------AAAUAAUC*G-----------------A 2
AA---GUG*UGCAGAGGAUUUACAAGAUAUAUUGUGCUAAAA-------------------------------------------------UAUUAAUC*G-----------------U 2
AAUU-GUG*CAGAGAAUUUACAAGAUAUAUUGUGCUAAAA---------------------------------------------------UAUUAAUC*G-----------------U 2
GA---GAC*AGGUUCUGAGUCAGAAAAAGGAAGAUCACAGA--------------------------------------------------ACAAGUGC*AG----------------U 2
GA---GAC*AGGUUCUGAGUCAGGAGAAAUAAGAUCACAGA--------------------------------------------------ACAAAUGC*AG----------------U 2
GA---GAC*AGGUUCUGAGUCAGGAGAAAUAAGAUCACAGA--------------------------------------------------ACAAGUGC*AG----------------U 2
A----UAC*CAGAGUGUUGCUAGUUCUCGAAACUAGCUGGCU-------------------------------------------------CAAUUAUC*G-----------------A 2
AAA--CGU*GGAAAUUACAAUACAGGUUUUUGCAUAA-----------------------------------------------------CCAUCAAUC*G-----------------U 2
AU---GGC*AAAACAAAAUUUUUUUUGCAAAUCAAA-------------------------------------------------------AAAAAUUC*G-----------------A 2
AU---GGC*AGUUACUACUCUACA-------------------------------------------------------------------ACCAUUUC*G-----------------G 2
AU---GGC*AAUAAAUGAACUUU--------------------------------------------------------------------UACCUAAU*G-----------------G 2
AU---GGC*AAUUCUACAA------------------------------------------------------------------------UCAAAUUC*G-----------------G 2
AU---GGC*AAUUUU-----------------------------------------------------------------------------UACAAUC*G-----------------G 2
AU---GGC*AGUUUCUUAAUAAAAUAAAGCUCAAAAAUUAUUCAUUAAGAAUAAAAAGAUAAUUCUAAUUUAAUUUUUGAUUUAAAACAUAUUUUUUUC*G-----------------A 1
AA---AGG*CGAAAACUUUAAGGUAUUACAAAUAAUUGCUGUAACAAAGGUGAUUACUUCUGUAACGAACUUAAAGCAAGUAUAAU-----AAAUAUCC*GGU---------------A 1
AU---GGC*ACUAUGGUUUAAAAGCGGUGGUGCUGGGUCUUUUUCUAAUUUGAUACUUAAUUAAUUAUAUUUGGGCAAUUAAAAU------AUUAAAUC*GU----------------U 1
AUAC-GGC*AGACAACAGAUUUAAAACAAAUAUUUAAAAACAAGUCUACUAAUAGGGGUUGUUUGUUUAAAAACAAGUUUUAA--------UUUAAUUC*G-----------------A 1
AAU--CAA*CGAUAAUUUUGAUGAAAUAAAGAAAAAUGGUUUUAAAAGGUAUUUUAAAAUAGAAAUAU---------------AAAAAUUAUUUAAUUC*A-----------------A 1
AAC--AAG*GCAAAAAAGGGAAAAUCAGUACAUAUGUAAUUUUGGAAGUAUUAAAAGAAAACAAUACAAAGAA------------------AAAUUAUC*G-----------------A 1
A-----GG*CGAAAGUUUAAUAAUUUGCUUAAAAAAGUAUCACAUUUAUAAAUUGACAAAUAACAAUCUAUAAAU----------------UUUACUUC*G-----------------A 1
A-----GG*CGAAAGUUUGAUAAUUUGCUUAAAAAAGUAUCACAUUUAUAAAUUGACAAAUAACAAUCUAUAAAU----------------UUUACUUC*G-----------------A 1
A-----GG*CGAAAGUUUGAUAAUUUGUUUAAAAAAGUAUCACAUUUAUAAAUUGACAAAUAA----------CAAUCUAUAAAU------UUUACUUC*G-----------------A 1
AAU--CGA*CAUAAAUUUGAUUGGAUAAAAACAAUUCUUAUUAUGAUUAAAGAAUGAUUCUAAUAGGA-----------------------UAUUAAAC*GACU--------------U 1
AU---GGC*AAGUUCUUCAAUAAGCAGUUUUUCGAUGUUAGCAUAUGGAAUAAGGAAUGCAAGUAGAAAAAA-------------------ACAUGAUC*G-----------------A 1
AU---GGC*AAGUUCUUCAAUAAGCAGUUUUUCGAUGUUAGCAUAUGGAAUAAGGAAUGCAAGUAGAAAAA--------------------ACAUGAUC*G-----------------A 1
AAU--GAC*AAGGCUGUAAUUCAAGUAAAUGUAAUUUCAAAUAUUGAUUUUAAUAGAAGAUUAAAAUUU----------------------UUACUUUG*U-----------------G 1
A----GAG*GAAUCAAAUGAGUAAAACAAGUAUUAUAGGUAAAUAUUAUGUU---------------------------------------UUUCUAUC*GAUUGUGCCUUGAAAAAGG 1
A----GGC*AGUAGAAGAAUAAUUUUUUAAUUUAGAUAGUAAAUUCAGGUAAGUUUACAUAUCAAAUU-----------------------ACAACUUC*G-----------------G 1
AU---GGC*AAGUUCUUAAAUAAGCAAUUUCGAUAUGAGCAAUGCAAAAGGUGCAAAAUAGGCGAAA------------------------ACAUAAUC*G-----------------A 1
AU---GGC*AAGUUCUUAAAUAAGCAAUUUCGAUAUGAGCAAUGCAAAGGGUGCAAAAUAGGCGAAA------------------------ACAUUAUC*G-----------------A 1
AU---GGC*AAGUUCUUGAAUAAGCAAUUUCGAUAUAAGCAAUGAAAAGGGUGCAAAAUAGGCGAAA------------------------ACAUAAUC*G-----------------A 1
A----GGC*AGUAGAAGAACAAGGUAUAUAAAGAGAACAUCAAAUUAUACAAGUAAGUUUGAGGUUG------------------------AUUAAUUC*G-----------------A 1
AAG--UGA*CGUGAGAUUAAUACAUAAAGAACAAAAAAAUUAAAUCUUAUUAUGAAUUUUCU-----------------------------UAAUACGC*GAC---------------A 1
AAG--UGA*CAACAAGUUCUUGGUAUUAGAACAAAUAGAAAAUAUUUGAUUUAUUAUUGAA------------------------------GAAUUUGC*GGU---------------U 1
AU---GAC*AGUAUUGGAACUUUUCUUUAUAAGUAAUAGCAAAUAUUAUGAAUUAAUGAAGAUU---------------------------UUAGAUGC*G-----------------A 1
AGC--GUG*UUCAGUUUAUUUUUGACGCAGAUCAAAACAAGAUCAAUACACUAAGACUGAUU-----------------------------GGAAAAAC*G-----------------G 1
A----GUC*GAGAAUGAUACAAAUUAUCAAAAUAGAAAAAAUAUACAGGUUUUUGAUAAAACU----------------------------UAACAUUC*G-----------------G 1
A--GCGUG*UUCAGUUCAAACUAGAAUGGAAAGAUCCGCACAAGUAGAAUGCGAAAAACUA------------------------------UUUUUGAC*G-----------------G 1
AAG--UGA*CGUGAGAUUAAUACAUAAAGAACAAAAAAUUAAUUCUUAUUAUGAAUUUU--------------------------------UAAUACGC*GAC---------------A 1
AGC--GUG*UUCAGUUCAAACUAGAAUGGAAAGAUCCGCACAAGUAGAAUGCGAAAAACUA------------------------------UUUUUGAC*G-----------------G 1
AGU--CUA*CGCUUAUGUGAAAAACAAAUAAUUUUUUAAUGUUGGAGUACAUUAAACUUUA------------------------------AAUUAAGC*G-----------------G 1
AU---GGC*AAGUUCUUAAUUUUCAAAAAAUGUUUUAAGAGGAUAAGAAAAAACAUUAUGCA-----------------------------AAACAUUC*G-----------------A 1
A----GAC*AAGACUCAGGAAUUAGAAUAUAAGUUACCAAGUUGAUAAAGGGUAUUUAAAAA-----------------------------UUCUAUGC*G-----------------G 1
A----GGU*AGUCAUAAUAGAAUGUAUAUUUUAAUUAAGUACAUAUGAAAUUACAGUAUAUU-----------------------------AACGAUUC*G-----------------A 1
A----GAC*AAUUAAUUAUUCUAAUCAAAUUAUAGCUAUGGUCUAUAAGUACAAGAAUAUU------------------------------GGUCAUAC*G-----------------A 1
AAG--CGC*GAAGAAUUUCUAAUGUUUGAUUAAGAAUGGUAUUUUGAACCAUUAUUGCU--------------------------------GAAAACUC*G-----------------G 1
AGA--GUG*UUCAGUUCAAACUAGACUGGAAAGAUUCGCAAGAAAUGCGAAUAAUACUA--------------------------------UUUUUGAC*G-----------------G 1
AGC--GUG*CGUACUUCAAACAUUUGAUAAGUGGUCCAUGUGAGAACAACAGGGAAACU--------------------------------UUCUUAGC*G-----------------G 1
AU---GGC*AAGUUUUUGAUAAGCUAUUGCAGUGGACGUGAAAUCCAUUGAUGCAAAACA-------------------------------UAUUCUUC*G-----------------A 1
A----UGC*UAAGACGAACAUGCAAAAAAUAAUAAUUCAAGAGGUGAAUUAAUUUUAUUU-------------------------------UGAUAUUC*G-----------------G 1
A----GUC*AGUGUAGGUAUAAAAAAGAAUGUAUGCUAAUAGAGUAUAUGAUAACAAAA--------------------------------CUUAAUUC*G-----------------G 1
AA---GAC*GAAUAUUACUAAUAUCUUUAAUAUUAUUUAUUGGACAUAAUGAAAGAAG---------------------------------AAAUUUUC*G-----------------U 1
AAU--CGA*CAUUAAAAUAAAACACAUAUAAUAGAAGAAAUUUAUAAAACAAAAA------------------------------------AUCUUUUC*GAC---------------A 1
AGA--GUG*UUCAGUUCAAACUAGACUGGAAAGAUCCGCAAGCAAUGCGAAUAACUA----------------------------------UUUUUGAC*G-----------------G 1
AU---CGC*AUUGACUUGAUAUGAUGAAGAGAUGGGCUGAAUAGUGUCAAUUUGGUCA---------------------------------AAACUUUC*A-----------------U 1
AG---CUA*CAGCAUAUUGACUAAUUUAAUGGCUCGUGAAAGAGCGAAACGAAAAGA----------------------------------AAAUUUGC*G-----------------A 1
AU---GGC*AAGUUCUUAAUUCAAACAAAAUGUUUUAAAGGCGAUAAGAAAAACAUU----------------------------------AAAUUCUC*G-----------------A 1
-----AGG*CAAAUUUUGAUACGUUUGAUAGUAAUAAUCAAAUUUAUUGAAUUCUAAC---------------------------------AAGAAAAC*A-----------------A 1
-----AGG*CGAAAUUUAAUUAAAAUUGAAAAGUAUCAAUUAACAUAUUAAAUUUACA---------------------------------AAUUAUUC*G-----------------A 1
A-----GG*CGUUCUUUUACAAAAUAUUAAUUGCUAAAUAUUUACUGAAAAAUAC---------------------------------UUAACAAGAAC*G-----------------A 1
AAU--CGA*CAUUAAAAUAAAACACAUAUAAUAGAAGAAUUUAUAAACAAAAA--------------------------------------AUCUUUUC*GAC---------------A 1
AG---CUA*CAGCAUAUUGACUAAUAAAUGGCUCGUGAAAGAGCGAAACGAAAAGA-----------------------------------AAAUUUGC*G-----------------A 1
AG---CUA*CAGCAUAUUGACUAAUUAAUCGCUCGUGAAAGAGCGAAACGAAAAGA-----------------------------------AAAUUUGC*G-----------------A 1
AG---CUA*CAGCAUAUUGACUAAUUAAUGGCUCGUGAAAGAGCGAAACGAAAAGA-----------------------------------AAAUUUGC*G-----------------A 1
AG---CUA*CAGCAUAUUGACUAAUUAAUGGCUCGUGAAAGAGUGAAAUGAAAAGA-----------------------------------AAAUUUGC*G-----------------A 1
AU---GAC*GGGUGAGAAAUUUAUCUAUUUAACAAUUUUAAUAGUUUUGGUAAGUA-----------------------------------AAUUUAUC*A-----------------A 1
AU---GAC*GGGUGAGAAAUUUAUCUAUUUAACAAUUUUAAUAGUUUUGGUAAGUA-----------------------------------AAUUUAUC*G-----------------A 1
A----GAC*UAGAAUCAAUUCUUGAAUAUAUCUAAAGGGUAGAUAUGAUUAAAUAA-----------------------------------ACUAAUUC*A-----------------A 1
AUUGCUGC*AGCAAUAGUGAGUAGAAGAACAAAGAUGCAUGAUCUUUGCUAU---------------------------------------AUGAAUUC*---G--------------U 1
A----AGC*AAUGACUGUAGUAAUUUUACAAGUCAAAUGAUGAAGAUUUGAAGAA------------------------------------AAUAAUUC*G-----------------C 1
A----UGC*AGCAAUUUAUUUACAGAUGACAAAUAAUAAAAAUGGGACUCUUAU-------------------------------------GUAAAUGC*GU----------------U 1
AA--CGGC*GUAUUGAUUAAUGGCUUUUUAACUUUUUAGUGACACUUGUUAUA--------------------------------------AAAAGUUC*U-----------------G 1
AU---GGC*AUGAUAAAAAUAAAGCGAAUAGGUGUAAGACAUAAGAUACAACUA-------------------------------------UGAUAUUC*G-----------------A 1
A----CGC*CAAGACUUGAAGAAUCAAAUUUAGAUUGAUAUUCUAAAAAUAAAU-------------------------------------UAAUUUUC*A-----------------U 1
A----GAG*GCGUAAUAUUUCUAAAAUAGUUGACAUUAAUUAUUGGGCAAAUGU-------------------------------------UAUUAAUC*G-----------------G 1
A----GGC*UUUCUUUAAGGAAAAGCUAUUCAAAAAUCUGAUGAAAAUGUUUUA-------------------------------------UCUUUUGG*U-----------------G 1
A----UAC*AGGGACAUAUGGUAAAAAGAAUAUUUUUGAAGAUUAUUAUUUUAC-------------------------------------UUCUUGUC*G-----------------G 1
AAU--CGC*AGUGACAAAAUGAUAUUAGAAGAAAAUGUUUUAUUGAAGAACA---------------------------------------UCUUAUUC*A-----------------U 1
AGA--CAG*CAAGUUCAAUGGAACAAUUCUAGAAAAGAAUUAUUGAUUGA-----------------------------------------UUAAUUGC*GGU---------------U 1
AU---GAC*AGUAUUGAAAACAAAUCUUUUCUUUGUAAUGUAUUAAAAAAAUU--------------------------------------UCAAAUGC*G-----------------A 1
UA---GGC*GUUGAAGAGAAAAUAACUUUUGUUUGCGGACAAAAAAAAUGAUA--------------------------------------GGUUAUUC*G-----------------A 1
AAG--CGC*AAAUAACAAGAUGAUGGAAGAUGAAAAUGGUCAGUAGUCUU-----------------------------------------UGAAUUUC*GU----------------A 1
AAU--CGC*AAUGACACACAUUUUUUGAUGAUAUUUAGAAAAAUAUAAUGA----------------------------------------AAAAAUUC*A-----------------U 1
AAU--CUG*CAACGAUUUUAACAGAUGAGUAUUUUAAUAUUUGGAAAUAUG----------------------------------------UAAUCUUC*A-----------------G 1
A----UGG*AGAAAGUCUCAUCUUCCAGCUUGCGACAUCUGAUCAACCAUCG---------------------------------------CUUAUUGC*G-----------------A 1
AU---GAC*AGGAUGAAGAUUAUUCUAUUACAUAAUUGGUGUAAGAAAAUA----------------------------------------AAAAGUGC*A-----------------U 1
A-----CG*CGAGAGCAUUUUAGAAAAAUGAACUUGUUUGAAGAGUUUGGU---------------------------------------UUCAUAUGC*G-----------------G 1
A----GGC*AAUAAAAGAUUAUUUAUGAUAUUGAACAAUUAUCAAUGAAUA----------------------------------------AAACAAUC*G-----------------A 1
A----UGC*CGAGCCAAAUGUUGAUAGCAAGCGAUAUAAGAACGCUAAAAA----------------------------------------ACAUUUGA*U-----------------G 1
AU---GAC*GUUACGAAUUGAAGAUUUAGAUACAUGUUUUUUUGUAAUCC-----------------------------------------UAAAUUUC*G-----------------A 1
AUC--GAG*AUAAUUACAGGAUAUUUAAAAGAUAUUAGCAAUUAUCUUA------------------------------------------CAAACAUC*G-----------------A 1
AUC--UAC*AAGAUAAAAUUAAGAGCAAAAAAGAGAGCAAAAAACUCAA------------------------------------------AUAAUAAC*G-----------------G 1
AU---GGC*AGCAAACAAAAAGUUUCCUCAAUAGAGUAUUGAGUUUUU-------------------------------------------AAAACAUC*G-----------------A 1
G----GGG*CUAAAUUUGAUUUUUCGAGAGUUGUCGAAUUACAAGUUUG------------------------------------------AAAAAUUC*A-----------------A 1
AAA--GAC*AGUUUUUGAUAACUUAGAUAUAAAGUUGUAUAUUAUU---------------------------------------------CUAAAUGC*G-----------------G 1
AAU--CGA*CAUUGAAACUAUAUUUUACUAAUAGAUUAAAAAAAUA---------------------------------------------AUAAGUUC*G-----------------A 1
A----CAC*GAGAGCAGGUUGACCAAGAAGAUCAUAAUAUUUCUUAA--------------------------------------------UUCAACUC*G-----------------U 1
AAA-CCCU*GGAAAUUUUAAAAAGAUGUCAUUUAAACACUUAU------------------------------------------------UUAAAAUC*G----------------UC 1
AAA-CCCU*GGAAAUUUUUUUGAUAUGUCAUUUACAUUUUAUA------------------------------------------------AAAAAAUC*G----------------UC 1
AAAAUGUG*CAGACACUACAUUAGAAUGUAUUAAUGCUUAAAA------------------------------------------------UAUAUUUC*G-----------------U 1
AAAC-CCU*GGAAAUUUUUUUGAUAUGUCAUUUACAUUUUAUA------------------------------------------------AAAAAAUC*----------------GUC 1
AU---GGC*AUUUAUUAUAAAAUAAAAUCUUUCGAAUGAUUAUCGA---------------------------------------------AAAACUUC*G-----------------A 1
-AAACCCU*GGAAAUUUUUUUAAUAUGUCAUUUACAUUUUAU-------------------------------------------------AAAAAAUC*G----------------UC 1
A-----GG*CGAUUUUACAAAUCAAGAAUAAUUGGUAAUUCUAAUGC--------------------------------------------UGAAUGAC*G-----------------A 1
A-----GG*CGUUCUUUUACAAGAAUAUUUUUGGUAAAUAUUUUAAU--------------------------------------------GAAAAUGC*G-----------------A 1
A----GGC*GAAGAAAUAAAUUUUAUAAGAGGAUUUAUAGAAAAUU---------------------------------------------AAUGAUAA*U-----------------G 1
AA---GUG*UGCAGAUAAAACAUUUGGAUAUGUUUAUGCUUAAAA----------------------------------------------UAUAUUUC*G-----------------A 1
AAAA-GUG*CAGACGAUACAUUAUUGUAUGUUAAUGCUUAAAA------------------------------------------------CAUAUUUC*G-----------------U 1
AAAC-CCU*GGAAAUUUUUUUAAUAUGUCAUUUACAUUUUAU-------------------------------------------------AAAAAAUC*----------------GUC 1
AAAC-GUG*CAGACGAUACAUUAGAAUGUAUUAAUGCUUAAAA------------------------------------------------UAUAUUUC*G-----------------U 1
AAAU-GUG*CAGACGAUACAUUAGAAUGUAUUAAUGCUUAAAA------------------------------------------------UAUAUUUC*G-----------------U 1
AAAU-GUG*CAGACGAUACAUUAUUGUAUGUUAAUGCUUAAAA------------------------------------------------UAUAUUUC*G-----------------U 1
AAAU-GUG*CAGACGAUGCAUUAGGAUGUAUUAAUGCUUAAAA------------------------------------------------UAUAUUUC*G-----------------U 1
AAAU-GUG*CAGAUAAAACAUUUAGAUAUGUUUAUGCUUAAAA------------------------------------------------UAUAUUUC*G-----------------U 1
AAAU-GUG*CAGAUAAAACAUUUGGAUAUGUUUUUGCUUAAAA------------------------------------------------UAUAUUUC*G-----------------U 1
AAGU-GUG*CAGACGAUACAUUAUAGUAUGUUAGUGCUUAAAA------------------------------------------------CAUAUUUC*G-----------------U 1
AAU--GUG*CAGAUGAACGAUACUGAUAUUGUUAUGCUUAAAAC-----------------------------------------------AAAUAUUC*A-----------------U 1
AAU--GUG*CAGAUGAACGAUACUGAUAUUGUUAUGCUUAAAAC-----------------------------------------------AAAUAUUC*G-----------------U 1
AU---GGC*AUUACGAUCGAUAAAGAAAUCAAUGCAUGGUUGAUG----------------------------------------------UUUUCUUC*G-----------------A 1
UC---CCG*AGCUCUUUUUAACCAACGUAAAAUUGGGAAAAAUGA----------------------------------------------GGCAAUUC*G-----------------A 1
A-----GA*CAAGAAAUUGGAUUAAAUAGAAAUAUUGAAAUUUG-----------------------------------------------AUUUCUGC*GGU---------------U 1
AA---GUG*UGCAGAUAAAACAUUGGAUAUGUUUAUGCUUAAAA-----------------------------------------------UAUAUUUC*G-----------------U 1
AA---GUG*UGCAGAUAAAACAUUUGGAUAUGUUAUGCUUAAAA-----------------------------------------------UAUAUUUC*G-----------------U 1
AAAC-CCU*GGAAAUUUUAAAAAGAUGUCAUUUACACUUAU--------------------------------------------------UUAAAAUC*----------------GUC 1
AAAU-GUG*CAGAUAAAACAUUGGAAAUGUUUAUGCUUAAAA-------------------------------------------------UCUAUUUC*G-----------------U 1
AAAU-GUG*CAGAUAAAACAUUUGGAUAUGUUAUGCUUAAAA-------------------------------------------------UAUAUUUC*G-----------------U 1
AAUU-GUG*CAGAUAAAACAUUGGAUAUGUUUAUGCUUAAAA-------------------------------------------------UAUAUUUC*G-----------------U 1
GA---GAC*AGGUUCUGAGUCAGGAAAAAAUAAGAUCACAGA-------------------------------------------------ACAAAUGC*AG----------------U 1
GA---GAC*AGGUUCUGAGUCAGGAAAAAAUAAGAUCACAGA-------------------------------------------------ACAAGUGC*AG----------------U 1
AAAU-GUG*CAGAAAAUUUGCAAGAUAUAUUGUGCUAAAA---------------------------------------------------UAUUAUUC*G-----------------U 1
AAC--CCU*GGAAAUUUUAAAAAGAUGUCAUUUACACUUAU--------------------------------------------------UUAAAAUC*G-----------------U 1
AGU--CCG*UACACAAUAUUUUAUUAUAAGACGAAUAAUAU--------------------------------------------------AUAAUAUC*G-----------------U 1
GA---GAC*AGGUUCUGAAUCAGGAGAAAUAAGAUCACAGA--------------------------------------------------ACAAAUGC*AG----------------U 1
GA---GAC*AGGUUCUGAGUCAGGAAACAGAAGAUCACAGA--------------------------------------------------AUAAGUGC*AG----------------U 1
UA---GGC*GUGAAAUGAUGAAACAGUAUGUUUAAAAUUGUU-------------------------------------------------UAAAAUUC*G-----------------A 1
A----GAC*AAUGACAUUUAGAAGAAAAGAUGCAAAAAUCUU-------------------------------------------------UACUAAUG*G-----------------A 1
AAU--CCG*UGCAAAGAAUUUAUUUAAUUGGAUUAUAAUA---------------------------------------------------AUAAUUUC*G-----------------C 1
AAUC-GUG*CAUAAAAUUACAAGAGAUAUUGUGCUAAAA----------------------------------------------------UAUUAUUC*A-----------------U 1
AU---GGC*AGAAACAAAUAAUCAAGGCUCUGCAUGAACCA--------------------------------------------------AAACAUUC*G-----------------A 1
AC---GGC*ACGAUUUCAUUCUAACAAUUGUUGAGCACAA---------------------------------------------------CAACAUUC*G-----------------A 1
GA---GAC*AGGUUCUAUAAUGACAAGAAGAUCGUCAGG----------------------------------------------------AAAACUGC*AG----------------U 1
A----GAC*AAUGACUAAGAAGAAAAGAUGCAAAAAUCUU---------------------------------------------------UACUAAUG*G-----------------A 1
AGU--CCG*UACAAAUUUCUUAUUAUAAGUCGAAUAAU-----------------------------------------------------AAUAAAUC*G-----------------U 1
AGU--CCG*UACAAAUUUCUUAUUAUAGAGUGAAUAAU-----------------------------------------------------AAUAAAUC*G-----------------U 1
A----AGC*AAGGACUCUUGUAAAAAAGAAAUUACUAAG----------------------------------------------------GAAAUUUC*G-----------------G 1
AA--UGCG*CAGAUAAAA-UCAGACCAAUAUGCUAAAU-----------------------------------------------------UGAUUAUC*G-----------------U 1
A---GUGC*AUUUCAGAAGGUUUCACAGUCAAUGAAA------------------------------------------------------AUAUGUUC*G-----------------G 1
AAG--UUG*GAAUAUAUUAGAAGAUAUUAUAAGAU--------------------------------------------------------UGAUAUGC*G-----------------G 1
AAG--CCG*UGCAAAUUUCUUAAUUGGAUUAUAA---------------------------------------------------------UUAUAUUC*G-----------------C 1
AU---GGC*AAAACAAAAUUUUUUUGCAAAUCAAA--------------------------------------------------------AAAACUUC*G-----------------A 1
AU---GGC*AAAACAAAAUUUUUUUGCAAAUCAA---------------------------------------------------------AAAACUUC*G-----------------A 1
AAUC-GAC*AAUCUUAUAUUAACAGAAAUA------------------------------------------------------------UGGACAUUA*G-----------------U 1
A----UAC*CUGGUUGCGCAUACCAUAAAAAUG----------------------------------------------------------CAUUUAUC*G-----------------A 1
AAG--GAC*UAGAAUAUUAGAAAAUAAUAA-------------------------------------------------------------AGCUUUUC*A-----------------A 1
A----GAG*UAGAUAUAUGGCAAGAAUUAUA------------------------------------------------------------CAUUUAUC*G-----------------G 1
AU---GGC*AAAUGUUUGGUUGGCAAAA---------------------------------------------------------------AACAAAUC*G-----------------A 1
AU---GGC*AUCCUUAACGGGACAGAA----------------------------------------------------------------UGAUGAUC*G-----------------G 1
A----GGC*GAGAAGAAUUAAAGAAUU----------------------------------------------------------------AAUAGUAA*U-----------------G 1
AAG--UUG*GAAUAUAUUAGAAGAU------------------------------------------------------------------UAAUAUGC*G-----------------G 1
AU---GAC*GGGUUUUUGAAAAAUCA-----------------------------------------------------------------AAACUAUC*G-----------------G 1
AAC--UUG*GAUAUAUUAGAAGAU-------------------------------------------------------------------UAAUAUGC*G-----------------G 1
AAUC-CGC*ACAAAAUUAAAAA--------------------------------------------------------------------CAAUUUUGC*G-----------------G 1
A----GGC*GAGAAAAAUU------------------------------------------------------------------------AAUGAUAA*U-----------------G 1
A----GGC*GAGAAAGAUU------------------------------------------------------------------------AAUGAUAA*U-----------------G 1
AAU--CGU*GAAACAA---------------------------------------------------------------------------AAUUUUGC*G-----------------U 1
AAU--CGU*GAAACA----------------------------------------------------------------------------AAAUUUGC*G-----------------U 1
Omitted sequenced and counts
AUC--GGC*AAGAUUAAAUGAUACUAUUAGGUACAAUAUAUA--------------------------------------------------GAACGCA*------------------U 3
A----GGC*UAGUCCAGACAAGAAAAAUUUGACGAACCUUAGAAUAGGUAAUUAAC-----------------------------------UUUUAUAC*------------------G 2
AUC--UAC*GUUUGAAGAUAAUUCUUUCCGAAUGGCAUUUAUUCAAAAA------------------------------------------GAAAAAUC*------------------G 2
AAUC-GAC*AAUCUUACAUUAACUGG----------------------------------------------------------------AACAUUGCA*------------------U 2
AA---UAA*AGUCUACGCUUUAUUAACAAGUGCAAUUAUUUUGUUUAAGGUGAA-------ACAAACAAAUUACAGUUCCUAAAAAAG--GGAAAAUGU*------------------G 1
AACU-UAC*GCUAUGAUUAACAAAUUAACUUUUGUUCUAGUGCGAUAGAAAAAAGAGCAAUUACUGCAUACG------------AGAGUAUGAAAAUGU*------------------G 1
AAU--UUA*CGCUUCUAUUAACAAUUAUGAUUGCGUUUAGUGCGAAAAAAG------------------CAAUUUACUGUACACAAAAGGUGUAAAUGU*------------------G 1
AUU-CUGC*AAUCCCUUGGUUGGGAAGUGUUGUCCAUAUAGUUCAAGAUGGAGACAUGAAUACAAGAUUA-----------------------UAUUAC*------------------U 1
AU---GAC*ACAGCUCAAAUAUGAUACGUUGUGCAUGAGUUAUGAGUAAUAGUAACUGAUGAACCUUA-----------------------AAAAAUUC*------------------U 1
AUU-CUGC*AACCCUCUUUAGGGUAUGUGUUAGCCAUAUUUUAGGAUGGAAACAUGAAUACAAGAUAU-------------------------AUUUAC*------------------U 1
AUAC-UGC*AGCCCCUUGGGGUUUGUUGUCCAUAUAGUUUAAGAUGGAAACAUUGAAUCAAG---ACAU------------------------AUUUAC*------------------U 1
AUA-CUGC*AGCCCUUUUUGGGGUUUGUUGUCCAUAUAGUUUAAGAUGGAAACAUAUUACAAGAU----------------------------AUUUAC*------------------U 1
AUA-CUGC*AGCCCUUUUGGGGUUUGUUGUCCAUAUAGUUUAAGAUGGAAACAUAUUACAAGAU-----------------------------AUUUAC*------------------U 1
AUUU-UGU*ACGAUGACAAAAAUACAGCGAGUUUAUAAUUAGGUAAUUAUAAAUAUAUGAAA-----------------------------CAUAUUGU*------------------U 1
AAU--CUG*CAAGAUUACAUGGAUAAUUAGGAUUAACAAGAAAAAAGGGUUUUUUAAAUU-------------------------------AAUGCUUC*------------------G 1
GU---GAC*ACACAAGCACAAAAGGUUAUAACGUUCGACUCGUUACUCGAAAAAGU-----------------------------------UAAUUUGC*------------------U 1
A----GGC*UAGCUCAAACUAGAAAAAUUUGACGAACCUUAGAAUAGGUAAUUAAC-----------------------------------UUUUAUAC*------------------G 1
AAU--CUA*CAUAUACUGAGAGAAAAUGAUAGUAUACAAGGUCAAUGUAUAACAA------------------------------------UUUUUGCC*------------------- 1
A----GGC*UAGUCCAGACAAGAAAAUUUGACGAACCUUAGAAUAGGUAAUUAAC------------------------------------UUUUAUAC*------------------G 1
AUC--UAC*AUGUAAAACAAGAAAUUUUCUUAUGUUCCUUUUUGAACUAAA----------------------------------------AAGUUUUC*------------------G 1
AUC--UGC*UAUAGAUAAAGAAAAUAAUGGAGCAGAACUCCCUAUAGUUUA----------------------------------------AAUUUUUC*------------------G 1
AUC--UGC*UAUAGAUAAAGAAAAUAAUGGAGCAGAACUCCUUUUAAUUUA----------------------------------------AAUUUUUC*G------------------ 1
AA--CCCG*ACAUUAUGAAUAAUUCUAUUAUAAUGGGUAUAAAAAUUAUU-----------------------------------------AUUACUUC*------------------G 1
AAC--CCG*ACAUUAUAAAUAAUUCUAUUAUAAUUGGUAUAAAGACUAUU-----------------------------------------AUUACUUC*------------------G 1
AAC--CCG*ACAUUAUGAAUAAUUCUAUUAUAAUGGGUAUAAAAAUUAUU-----------------------------------------AUUACUUC*------------------G 1
AUC--UAC*GUUUGAAGAUAAUUCUUUCCGAAUGGCAUUUAUUCAAAAAG-----------------------------------------AAAAAAUC*G------------------ 1
AAC--CCG*ACUUUAUUACAAUAAUAUGAUCUAAUUUUAUUAUG-----------------------------------------------ACUAUUUC*------------------G 1
AC---GCC*GUGAUUUCACUUUGUUAAAUAGGCAAUAACUUAGA-----------------------------------------------UCUCACGC*------------------C 1
AU---GAC*GGGUGAGAAAUUUAUCUAUUUAAUAAUUCUAAUGA-----------------------------------------------UUUUGAUA*------------------A 1
AG---CUC*UCGGUGAAGAACCGGUCUGUAUCAACCGCUAGAU------------------------------------------------ACUCAAGC*------------------U 1
AU---CUA*CGUUGGAUAUAACGUUUACGUAUGGGUAAAAAAAUCUA------------------------------------------------UUAU*------------------G 1
AU---GUC*GUAGUAUUGGUACUCUCUAAAAAUUAACUAGUAA------------------------------------------------CGAUCUGC*------------------C 1
A----GGC*AAACAAACAGAUAAUUAUAUGAAAGCAUAUCAU-------------------------------------------------AACAAAUC*------------------- 1
AU---GCC*GAAAUAUUAGCUUAUAUGAGAUAAG---------------------------------------------------------AUUUUUGC*------------------C 1
A---CACC*GGAUAGUAGUUUCUAGUAAAUGAU----------------------------------------------------------GAUCCUGC*------------------C 1
AC---GCC*GAAAAAAAGAAAUCCUUAACCCGU----------------------------------------------------------UUUUUCGC*------------------C 1
AU---GUC*AACGUUCAGUUUAUGGAGUAUAAA----------------------------------------------------------AAGAUCGC*------------------C 1
AUC--CCU*UGUGAAGAUAAAACACAUUGG-------------------------------------------------------------UUAAAAUC*G------------------ 1
AUC--CGC*GACAUAUAAGAUCACUCCUUU-------------------------------------------------------------UAUGUAGC*------------------C 1
A----GAG*GCAGUUUACAAUAACU-------------------------------------------------------------------AUUGGUG*------------------U 1
A----GAG*GCAGUUUACGAUAACU-------------------------------------------------------------------AUUGGUG*------------------U 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group J3_69466.1
Basepair signature:
|
0.00 | -2137.91 | 39 | 36 |
|
| 2 |
Motif group J3_93261.1
Basepair signature:
|
0.00 | -2388.89 | 38 | 34.5 |
|
| 3 |
Motif group J3_63687.1
Basepair signature:
|
0.00 | -2458.53 | 37 | 33 |
|
| 4 |
Motif group J3_28460.1
Basepair signature:
|
0.00 | -2664.85 | 41 | 39 |
|
| 5 |
Motif group J3_21426.1
Basepair signature:
|
0.00 | -2669.04 | 38 | 36 |
|
| 6 |
Motif group J3_58429.1
Basepair signature:
|
0.00 | -2718.85 | 40 | 39 |
|
| 7 |
Motif group J3_01596.1
Basepair signature:
|
0.00 | -2726.90 | 40 | 39 |
|
| 8 |
Motif group J3_13378.1
Basepair signature:
|
0.00 | -2926.10 | 51 | 48 |
|
| 9 |
Motif group J3_28639.1
Basepair signature:
|
0.00 | -3099.84 | 36 | 34 |
|
| 10 |
Motif group J3_83516.4
Basepair signature:
|
0.00 | -3301.77 | 40 | 37.5 |
|
| 11 |
Motif group J3_39320.1
Basepair signature:
|
0.00 | -3435.79 | 41 | 39 |
|
| 12 |
Motif group J3_30040.2
Basepair signature:
|
0.00 | -3561.82 | 36 | 34.5 |
|
| 13 |
Motif group J3_72012.1
Basepair signature:
|
0.00 | -3596.98 | 40 | 39 |
|
| 14 |
Motif group J3_61367.1
Basepair signature:
|
0.00 | -3619.50 | 43.5 | 42 |
|
| 15 |
Motif group J3_58525.1
Basepair signature:
|
0.00 | -3748.29 | 38 | 37.5 |
|
| 16 |
Motif group J3_38098.1
Basepair signature:
|
0.00 | -3845.89 | 41 | 41 |
|
| 17 |
Motif group J3_22899.1
Basepair signature:
|
0.00 | -3934.67 | 44 | 43 |
|
| 18 |
Motif group J3_47707.1
Basepair signature:
|
0.00 | -3940.41 | 38.5 | 35 |
|
| 19 |
Motif group J3_10708.1
Basepair signature:
|
0.00 | -3945.12 | 34 | 31.5 |
|
| 20 |
Motif group J3_44163.2
Basepair signature:
|
0.00 | -3946.42 | 39 | 39 |
|
| 21 |
Motif group J3_44792.1
Basepair signature:
|
0.00 | -3955.85 | 42 | 41 |
|
| 22 |
Motif group J3_41596.1
Basepair signature:
|
0.00 | -3963.72 | 41.5 | 39 |
|
| 23 |
Motif group J3_83592.1
Basepair signature:
|
0.00 | -3988.50 | 42 | 39 |
|
| 24 |
Motif group J3_46173.1
Basepair signature:
|
0.00 | -4008.47 | 41 | 38 |
|
| 25 |
Motif group J3_03190.1
Basepair signature:
|
0.00 | -4015.45 | 39 | 38 |
|
| 26 |
Motif group J3_00458.1
Basepair signature:
|
0.00 | -4020.33 | 41 | 39 |
|
| 27 |
Motif group J3_33327.1
Basepair signature:
|
0.00 | -4025.59 | 38 | 35 |
|
| 28 |
Motif group J3_83726.1
Basepair signature:
|
0.00 | -4040.46 | 45 | 42 |
|
| 29 |
Motif group J3_75076.1
Basepair signature:
|
0.00 | -4047.97 | 46 | 43 |
|
| 30 |
Motif group J3_77951.1
Basepair signature:
|
0.00 | -4054.82 | 40 | 38 |
|
| 31 |
Motif group J3_20992.1
Basepair signature:
|
0.00 | -4068.38 | 41 | 40 |
|
| 32 |
Motif group J3_53439.1
Basepair signature:
|
0.00 | -4069.27 | 42 | 40 |
|
| 33 |
Motif group J3_19664.1
Basepair signature:
|
0.00 | -4072.05 | 44 | 42 |
|
| 34 |
Motif group J3_75408.1
Basepair signature:
|
0.00 | -4081.42 | 42 | 40 |
|
| 35 |
Motif group J3_46299.2
Basepair signature:
|
0.00 | -4088.18 | 41 | 39.5 |
|
| 36 |
Motif group J3_76375.1
Basepair signature:
|
0.00 | -4093.95 | 43 | 40 |
|
| 37 |
Motif group J3_23373.1
Basepair signature:
|
0.00 | -4098.37 | 43 | 41 |
|
| 38 |
Motif group J3_46124.1
Basepair signature:
|
0.00 | -4114.84 | 44 | 41 |
|
| 39 |
Motif group J3_65403.1
Basepair signature:
|
0.00 | -4126.95 | 43 | 42 |
|
| 40 |
Motif group J3_74474.1
Basepair signature:
|
0.00 | -4137.88 | 40 | 38.5 |
|
| 41 |
Motif group J3_59706.1
Basepair signature:
|
0.00 | -4150.98 | 42 | 41 |
|
| 42 |
Motif group J3_08158.1
Basepair signature:
|
0.00 | -4186.89 | 41 | 38 |
|
| 43 |
Motif group J3_68440.1
Basepair signature:
|
0.00 | -4199.08 | 38 | 35 |
|
| 44 |
Motif group J3_08394.3
Basepair signature:
|
0.00 | -4207.07 | 45.5 | 44 |
|
| 45 |
Motif group J3_90186.1
Basepair signature:
|
0.00 | -4219.36 | 40.5 | 39 |
|
| 46 |
Motif group J3_36387.1
Basepair signature:
|
0.00 | -4232.67 | 42.5 | 39.5 |
|
| 47 |
Motif group J3_65214.1
Basepair signature:
|
0.00 | -4268.30 | 39 | 37 |
|
| 48 |
Motif group J3_97280.1
Basepair signature:
|
0.00 | -4280.42 | 40 | 38 |
|
| 49 |
Motif group J3_83332.1
Basepair signature:
|
0.00 | -4283.75 | 42 | 39.5 |
|
| 50 |
Motif group J3_46317.4
Basepair signature:
|
0.00 | -4300.22 | 41 | 39 |
|
| 51 |
Motif group J3_19286.1
Basepair signature:
|
0.00 | -4322.97 | 43 | 40 |
|
| 52 |
Motif group J3_84052.1
Basepair signature:
|
0.00 | -4325.26 | 43 | 40 |
|
| 53 |
Motif group J3_37047.6
Basepair signature:
|
0.00 | -4342.93 | 41 | 39 |
|
| 54 |
Motif group J3_96372.2
Basepair signature:
|
0.00 | -4358.80 | 43 | 41 |
|
| 55 |
Motif group J3_99563.1
Basepair signature:
|
0.00 | -4367.60 | 45 | 44 |
|
| 56 |
Motif group J3_98484.1
Basepair signature:
|
0.00 | -4368.62 | 43 | 40 |
|
| 57 |
Motif group J3_44961.1
Basepair signature:
|
0.00 | -4368.84 | 46 | 43 |
|
| 58 |
Motif group J3_71753.1
Basepair signature:
|
0.00 | -4388.72 | 42 | 40 |
|
| 59 |
Motif group J3_00210.1
Basepair signature:
|
0.00 | -4410.63 | 43 | 41 |
|
| 60 |
Motif group J3_58957.1
Basepair signature:
|
0.00 | -4414.51 | 44 | 42 |
|
| 61 |
Motif group J3_04315.1
Basepair signature:
|
0.00 | -4419.85 | 47 | 45 |
|
| 62 |
Motif group J3_88257.1
Basepair signature:
|
0.00 | -4423.82 | 43 | 40 |
|
| 63 |
Motif group J3_25303.4
Basepair signature:
|
0.00 | -4425.21 | 44 | 40 |
|
| 64 |
Motif group J3_41339.1
Basepair signature:
|
0.00 | -4425.52 | 48 | 47 |
|
| 65 |
Motif group J3_45099.1
Basepair signature:
|
0.00 | -4437.27 | 45 | 44 |
|
| 66 |
Motif group J3_32030.1
Basepair signature:
|
0.00 | -4439.16 | 46 | 43 |
|
| 67 |
Motif group J3_97609.1
Basepair signature:
|
0.00 | -4447.94 | 44 | 41 |
|
| 68 |
Motif group J3_34864.2
Basepair signature:
|
0.00 | -4451.15 | 44 | 41 |
|
| 69 |
Motif group J3_69441.1
Basepair signature:
|
0.00 | -4451.39 | 43 | 40 |
|
| 70 |
Motif group J3_88233.1
Basepair signature:
|
0.00 | -4455.37 | 42 | 38 |
|
| 71 |
Motif group J3_89737.1
Basepair signature:
|
0.00 | -4478.71 | 46 | 45 |
5S rRNA junction |
| 72 |
Motif group J3_45482.1
Basepair signature:
|
0.00 | -4486.42 | 47 | 45 |
|
| 73 |
Motif group J3_87797.1
Basepair signature:
|
0.00 | -4497.39 | 45 | 43 |
|
| 74 |
Motif group J3_38881.1
Basepair signature:
|
0.00 | -4503.90 | 46 | 44 |
|
| 75 |
Motif group J3_76475.2
Basepair signature:
|
0.00 | -4514.20 | 44 | 41 |
|
| 76 |
Motif group J3_12393.2
Basepair signature:
|
0.00 | -4570.72 | 44 | 41 |
|
| 77 |
Motif group J3_45941.1
Basepair signature:
|
0.00 | -4571.98 | 44 | 42 |
|
| 78 |
Motif group J3_55773.1
Basepair signature:
|
0.00 | -4574.59 | 42 | 39.5 |
|
| 79 |
Motif group J3_89095.1
Basepair signature:
|
0.00 | -4577.86 | 44 | 41 |
|
| 80 |
Motif group J3_08040.1
Basepair signature:
|
0.00 | -4586.99 | 44 | 41 |
|
| 81 |
Motif group J3_17791.2
Basepair signature:
|
0.00 | -4595.39 | 40 | 38 |
|
| 82 |
Motif group J3_68164.1
Basepair signature:
|
0.00 | -4812.33 | 43 | 41 |
|
| 83 |
Motif group J3_62630.1
Basepair signature:
|
0.00 | -4919.89 | 43 | 41 |
|
| 84 |
Motif group J3_92134.2
Basepair signature:
|
0.00 | -4937.06 | 50 | 50 |
|
| 85 |
Motif group J3_24879.1
Basepair signature:
|
0.00 | -4966.78 | 51 | 50 |
|
| 86 |
Motif group J3_35667.2
Basepair signature:
|
0.00 | -5059.49 | 44 | 43 |
|
| 87 |
Motif group J3_06335.1
Basepair signature:
|
0.00 | -5188.86 | 44 | 40 |
|
| 88 |
Motif group J3_11934.4
Basepair signature:
|
0.00 | -5222.36 | 42 | 40 |
|
| 89 |
Motif group J3_07703.1
Basepair signature:
|
0.00 | -5400.58 | 42 | 39 |
|
| 90 |
Motif group J3_98379.3
Basepair signature:
|
0.00 | -5404.41 | 43 | 40.5 |
|
| 91 |
Motif group J3_21998.1
Basepair signature:
|
0.00 | -5416.31 | 46 | 45 |
|
| 92 |
Motif group J3_98798.1
Basepair signature:
|
0.00 | -5418.03 | 47 | 46 |
|
| 93 |
Motif group J3_01052.1
Basepair signature:
|
0.00 | -5464.45 | 44 | 42 |
|
| 94 |
Motif group J3_65990.1
Basepair signature:
|
0.00 | -5472.36 | 46 | 43 |
|
| 95 |
Motif group J3_71677.1
Basepair signature:
|
0.00 | -5494.88 | 42 | 40 |
|
| 96 |
Motif group J3_32857.1
Basepair signature:
|
0.00 | -5522.27 | 46 | 44 |
|
| 97 |
Motif group J3_85054.4
Basepair signature:
|
0.00 | -5550.29 | 44 | 41 |
|
| 98 |
Motif group J3_31965.2
Basepair signature:
|
0.00 | -5551.52 | 44 | 42 |
|
| 99 |
Motif group J3_58090.1
Basepair signature:
|
0.00 | -5558.03 | 39 | 38 |
|
| 100 |
Motif group J3_89368.5
Basepair signature:
|
0.00 | -5558.52 | 45 | 41 |
|
| 101 |
Motif group J3_20650.1
Basepair signature:
|
0.00 | -5569.97 | 44 | 41 |
|
| 102 |
Motif group J3_82572.1
Basepair signature:
|
0.00 | -5616.37 | 45.5 | 42 |
|
| 103 |
Motif group J3_79369.1
Basepair signature:
|
0.00 | -5633.52 | 46 | 45 |
|
| 104 |
Motif group J3_17385.4
Basepair signature:
|
0.00 | -5692.57 | 43 | 41 |
|
| 105 |
Motif group J3_97642.1
Basepair signature:
|
0.00 | -5712.44 | 44 | 43 |
|
| 106 |
Motif group J3_20574.1
Basepair signature:
|
0.00 | -5735.26 | 46 | 43 |
|
| 107 |
Motif group J3_19545.2
Basepair signature:
|
0.00 | -5759.25 | 41 | 40 |
|
| 108 |
Motif group J3_15893.1
Basepair signature:
|
0.00 | -5843.81 | 46 | 44 |
C-di-AMP riboswitch |
| 109 |
Motif group J3_64069.1
Basepair signature:
|
0.00 | -5874.14 | 43 | 42 |
|
| 110 |
Motif group J3_92705.1
Basepair signature:
|
0.00 | -5914.23 | 46 | 43 |
|
| 111 |
Motif group J3_93637.1
Basepair signature:
|
0.00 | -6046.17 | 43 | 41 |
|
| 112 |
Motif group J3_37089.1
Basepair signature:
|
0.00 | -6073.36 | 44 | 43 |
|
| 113 |
Motif group J3_36499.1
Basepair signature:
|
0.00 | -6104.02 | 45 | 43 |
|
| 114 |
Motif group J3_97971.2
Basepair signature:
|
0.00 | -6140.85 | 41 | 38.5 |
|
| 115 |
Motif group J3_89044.1
Basepair signature:
|
0.00 | -6227.83 | 47 | 45 |
|
| 116 |
Motif group J3_61124.2
Basepair signature:
|
0.00 | -6306.94 | 43 | 41 |
|
| 117 |
Motif group J3_31041.1
Basepair signature:
|
0.00 | -6310.57 | 42 | 40 |
|
| 118 |
Motif group J3_24127.1
Basepair signature:
|
0.00 | -6315.68 | 45.5 | 43 |
|
| 119 |
Motif group J3_51249.1
Basepair signature:
|
0.00 | -6337.34 | 40.5 | 39 |
|
| 120 |
Motif group J3_76911.2
Basepair signature:
|
0.00 | -6349.22 | 46 | 44 |
|
| 121 |
Motif group J3_44724.7
Basepair signature:
|
0.00 | -6441.79 | 44 | 42 |
|
| 122 |
Motif group J3_67856.4
Basepair signature:
|
0.00 | -6510.29 | 42 | 41 |
|
| 123 |
Motif group J3_76043.3
Basepair signature:
|
0.00 | -6517.16 | 46 | 45 |
|
| 124 |
Motif group J3_04521.1
Basepair signature:
|
0.00 | -6526.42 | 44 | 42 |
|
| 125 |
Motif group J3_72575.1
Basepair signature:
|
0.00 | -6531.05 | 43 | 41.5 |
|
| 126 |
Motif group J3_33494.1
Basepair signature:
|
0.00 | -6575.39 | 42.5 | 39.5 |
|
| 127 |
Motif group J3_94999.1
Basepair signature:
|
0.00 | -6591.71 | 45 | 42 |
|
| 128 |
Motif group J3_32852.6
Basepair signature:
|
0.00 | -6685.35 | 46.5 | 44 |
|
| 129 |
Motif group J3_41097.1
Basepair signature:
|
0.00 | -6721.00 | 45 | 42 |
phi29 pRNA |
| 130 |
Motif group J3_94652.1
Basepair signature:
|
0.00 | -6760.53 | 45 | 42 |
|
| 131 |
Motif group J3_47376.1
Basepair signature:
|
0.00 | -6771.92 | 42 | 41 |
|
| 132 |
Motif group J3_32601.5
Basepair signature:
|
0.00 | -6773.97 | 44 | 41 |
|
| 133 |
Motif group J3_51910.1
Basepair signature:
|
0.00 | -6790.72 | 43 | 42 |
|
| 134 |
Motif group J3_28621.5
Basepair signature:
|
0.00 | -6878.96 | 43 | 40 |
|
| 135 |
Motif group J3_80708.1
Basepair signature:
|
0.00 | -6962.44 | 43 | 41 |
|
| 136 |
Motif group J3_81015.1
Basepair signature:
|
0.00 | -7004.39 | 44 | 42 |
|
| 137 |
Motif group J3_52655.4
Basepair signature:
|
0.00 | -7119.59 | 47 | 45 |
|
| 138 |
Motif group J3_09667.1
Basepair signature:
|
0.00 | -7166.87 | 42.5 | 40 |
|
| 139 |
Motif group J3_25217.1
Basepair signature:
|
0.00 | -7188.33 | 47 | 45 |
|
| 140 |
Motif group J3_01425.1
Basepair signature:
|
0.00 | -7239.86 | 46.5 | 46 |
|
| 141 |
Motif group J3_47324.1
Basepair signature:
|
0.00 | -7316.47 | 43 | 40 |
|
| 142 |
Motif group J3_93059.1
Basepair signature:
|
0.00 | -7376.33 | 46 | 44 |
|
| 143 |
Motif group J3_36821.1
Basepair signature:
|
0.00 | -7488.04 | 43 | 40 |
|
| 144 |
Motif group J3_80578.1
Basepair signature:
|
0.00 | -7626.48 | 44 | 42 |
|
| 145 |
Motif group J3_64189.2
Basepair signature:
|
0.00 | -7665.18 | 47 | 44 |
|
| 146 |
Motif group J3_28315.1
Basepair signature:
|
0.00 | -7952.70 | 44 | 42 |
|
| 147 |
Motif group J3_10118.1
Basepair signature:
|
0.00 | -7965.36 | 43 | 40 |
|
| 148 |
Motif group J3_22198.1
Basepair signature:
|
0.00 | -8210.15 | 45 | 43 |
|
| 149 |
Motif group J3_14360.1
Basepair signature:
|
0.00 | -8411.53 | 44 | 42 |
|
| 150 |
Motif group J3_11375.2
Basepair signature:
|
0.00 | -8451.50 | 43 | 41 |
|
| 151 |
Motif group J3_41486.2
Basepair signature:
|
0.00 | -8567.45 | 46.5 | 44 |
|
| 152 |
Motif group J3_26675.1
Basepair signature:
|
0.00 | -8662.07 | 44 | 40 |
|
| 153 |
Motif group J3_38151.1
Basepair signature:
|
0.00 | -8729.47 | 46.5 | 45 |
|
| 154 |
Motif group J3_82365.4
Basepair signature:
|
0.00 | -8778.05 | 45 | 44 |
|
| 155 |
Motif group J3_56052.5
Basepair signature:
|
0.00 | -8932.16 | 44 | 41.5 |
|
| 156 |
Motif group J3_59914.1
Basepair signature:
|
0.00 | -9084.49 | 47 | 44 |
|
| 157 |
Motif group J3_60031.2
Basepair signature:
|
0.00 | -9175.83 | 42 | 39 |
|
| 158 |
Motif group J3_70599.1
Basepair signature:
|
0.00 | -9589.14 | 42 | 40 |
|
| 159 |
Motif group J3_05216.1
Basepair signature:
|
0.00 | -9999.00 | 47 | 44 |
|
| 160 |
Motif group J3_07845.1
Basepair signature:
|
0.00 | -9999.00 | 48 | 45 |
|
| 161 |
Motif group J3_12003.2
Basepair signature:
|
0.00 | -9999.00 | 47 | 44 |
|
| 162 |
Motif group J3_30104.1
Basepair signature:
|
0.00 | -9999.00 | 47 | 46 |
|
| 163 |
Motif group J3_30478.1
Basepair signature:
|
0.00 | -9999.00 | 46 | 43 |
|
| 164 |
Motif group J3_75962.2
Basepair signature:
|
0.00 | -9999.00 | 44 | 42 |
|
| 165 |
Motif group J3_99595.1
Basepair signature:
|
0.00 | -9999.00 | 47 | 44 |
|