6V3E Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6V3E_001 | 1/sN1/14:24 | No text annotation Not in a motif group | homologous HL_4LFB_001 HL_89881.2 | |
| HL_6V3E_002 | 1/sN1/73:94 | No text annotation Not in a motif group | ||
| HL_6V3E_003 | 1/sN1/154:159 | GNRA Not in a motif group | homologous HL_5J7L_003 HL_42097.1 | |
| HL_6V3E_004 | 1/sN1/182:187 | No text annotation Not in a motif group | geometric HL_6CK5_001 HL_03562.2 | |
| HL_6V3E_005 | 1/sN1/199:210 | No text annotation Not in a motif group | ||
| HL_6V3E_006 | 1/sN1/255:263 | No text annotation Not in a motif group | homologous HL_5J7L_006 HL_69023.2 | |
| HL_6V3E_007 | 1/sN1/292:297 | GNRA Not in a motif group | homologous HL_5J7L_007 HL_42097.1 | |
| HL_6V3E_008 | 1/sN1/316:329 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_6V3E_009 | 1/sN1/338:343 | UNCG Not in a motif group | homologous HL_4LFB_009 HL_03562.2 | |
| HL_6V3E_010 | 1/sN1/375:380 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_6V3E_011 | 1/sN1/415:420 | UNCG Not in a motif group | homologous HL_5J7L_011 HL_03562.2 | |
| HL_6V3E_012 | 1/sN1/458:466 | No text annotation Not in a motif group | homologous HL_5J7L_012 HL_84085.2 | |
| HL_6V3E_013 | 1/sN1/518:525 | No text annotation Not in a motif group | geometric HL_1WZ2_007 HL_10278.1 | |
| HL_6V3E_014 | 1/sN1/614:620 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_6V3E_015 | 1/sN1/686:695 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_12326.1 | |
| HL_6V3E_016 | 1/sN1/723:728 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_6V3E_017 | 1/sN1/783:793 | No text annotation Not in a motif group | homologous HL_6CZR_088 HL_12326.1 | |
| HL_6V3E_018 | 1/sN1/837:843 | No text annotation Not in a motif group | ||
| HL_6V3E_019 | 1/sN1/859:864 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_6V3E_020 | 1/sN1/894:899 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_6V3E_021 | 1/sN1/960:969 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_6V3E_022 | 1/sN1/1007:1015 | No text annotation Not in a motif group | homologous HL_6CZR_093 NA | |
| HL_6V3E_023 | 1/sN1/1025:1030 | No text annotation Not in a motif group | geometric HL_2Y8W_001 HL_01057.1 | |
| HL_6V3E_024 | 1/sN1/1073:1078 | GNRA Not in a motif group | homologous HL_5J7L_023 HL_42097.1 | |
| HL_6V3E_025 | 1/sN1/1086:1093 | No text annotation Not in a motif group | homologous HL_6CZR_096 HL_71554.2 | |
| HL_6V3E_026 | 1/sN1/1131:1137 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_6V3E_027 | 1/sN1/1161:1169 | No text annotation Not in a motif group | ||
| HL_6V3E_028 | 1/sN1/1262:1267 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_42097.1 | |
| HL_6V3E_029 | 1/sN1/1311:1320 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_6V3E_030 | 1/sN1/1353:1363 | No text annotation Not in a motif group | homologous HL_4LFB_030 HL_96366.1 | |
| HL_6V3E_031 | 1/sN1/1445:1452 | No text annotation Not in a motif group | geometric HL_2Y9H_005 HL_47100.1 | |
| HL_6V3E_032 | 1/sN1/1512:1517 | No text annotation Not in a motif group | homologous HL_6CZR_103 NA |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6V3E_001 | 1/sN1/32:34, 1/sN1/549:550 | Single bulged G Not in a motif group | homologous IL_5J7L_001 IL_00225.2 | |
| IL_6V3E_002 | 1/sN1/46:47, 1/sN1/392:394 | Single bulged A Not in a motif group | homologous IL_5J7L_002 IL_37497.2 | |
| IL_6V3E_003 | 1/sN1/49:54, 1/sN1/355:357 | No text annotation Not in a motif group | homologous IL_5J7L_003 IL_11178.1 | |
| IL_6V3E_004 | 1/sN1/56:58, 1/sN1/352:353 | Minor groove platform Not in a motif group | homologous IL_4LFB_004 IL_93353.1 | |
| IL_6V3E_005 | 1/sN1/65:68, 1/sN1/99:100 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_005 IL_76389.1 | |
| IL_6V3E_006 | 1/sN1/69:71, 1/sN1/96:98 | No text annotation Not in a motif group | homologous IL_6CZR_118 IL_95997.1 | |
| IL_6V3E_007 | 1/sN1/124:127, 1/sN1/227:229 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_009 IL_82068.2 | |
| IL_6V3E_008 | 1/sN1/128:132, 1/sN1/223:226 | No text annotation Not in a motif group | homologous IL_4LFB_008 IL_58764.3 | |
| IL_6V3E_009 | 1/sN1/140:142, 1/sN1/172:174 | Isolated cWH basepair Not in a motif group | homologous IL_5J7L_011 IL_51629.2 | |
| IL_6V3E_010 | 1/sN1/143:149, 1/sN1/164:171 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_5J7L_012 IL_80604.2 | |
| IL_6V3E_011 | 1/sN1/238:243, 1/sN1/273:280 | Kink-turn with non-sequential stacking Not in a motif group | geometric IL_4V88_402 IL_45067.2 | |
| IL_6V3E_012 | 1/sN1/245:248, 1/sN1/270:271 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_6V3E_013 | 1/sN1/288:289, 1/sN1/300:304 | C-loop Not in a motif group | homologous IL_6CZR_125 IL_37712.2 | |
| IL_6V3E_014 | 1/sN1/363:365, 1/sN1/388:389 | Single bulged U Not in a motif group | homologous IL_6CZR_126 IL_83039.13 | |
| IL_6V3E_015 | 1/sN1/367:371, 1/sN1/385:386 | C-loop Not in a motif group | homologous IL_5J7L_018 IL_75255.1 | |
| IL_6V3E_016 | 1/sN1/371:372, 1/sN1/383:385 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_6V3E_017 | 1/sN1/405:412, 1/sN1/423:429 | No text annotation Not in a motif group | homologous IL_5J7L_020 IL_28026.1 | |
| IL_6V3E_018 | 1/sN1/436:438, 1/sN1/489:494 | No text annotation Not in a motif group | homologous IL_5J7L_021 IL_22248.1 | |
| IL_6V3E_019 | 1/sN1/442:446, 1/sN1/480:485 | tSH-tHW-tWW Not in a motif group | geometric IL_5J7L_022 IL_88269.3 | |
| IL_6V3E_020 | 1/sN1/446:449, 1/sN1/476:480 | No text annotation Not in a motif group | ||
| IL_6V3E_021 | 1/sN1/452:453, 1/sN1/471:473 | Single stack bend Not in a motif group | geometric IL_7A0S_005 IL_76488.2 | |
| IL_6V3E_022 | 1/sN1/501:508, 1/sN1/537:538 | SSU/LSU pseudoknot Not in a motif group | homologous IL_4LFB_020 IL_15861.7 | |
| IL_6V3E_023 | 1/sN1/512:518, 1/sN1/525:533 | No text annotation Not in a motif group | homologous IL_4LFB_021 NA | |
| IL_6V3E_024 | 1/sN1/566:572, 1/sN1/877:878 | No text annotation Not in a motif group | homologous IL_6CZR_134 IL_69996.1 | |
| IL_6V3E_025 | 1/sN1/577:581, 1/sN1/754:758 | tSH-tHW-tHS Not in a motif group | homologous IL_6CZR_135 IL_17136.1 | |
| IL_6V3E_026 | 1/sN1/591:593, 1/sN1/641:642 | Major groove platform Not in a motif group | homologous IL_5J7L_028 IL_27635.1 | |
| IL_6V3E_027 | 1/sN1/594:595, 1/sN1/637:640 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_4LFB_025 IL_09061.6 | |
| IL_6V3E_028 | 1/sN1/601:609, 1/sN1/625:631 | No text annotation Not in a motif group | ||
| IL_6V3E_029 | 1/sN1/651:653, 1/sN1/747:751 | Major groove platform with extra pair Not in a motif group | geometric IL_7RQB_093 IL_63450.2 | |
| IL_6V3E_030 | 1/sN1/656:658, 1/sN1/741:744 | No text annotation Not in a motif group | geometric IL_4WSM_372 IL_33061.1 | |
| IL_6V3E_031 | 1/sN1/659:663, 1/sN1/737:740 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_033 IL_71110.1 | |
| IL_6V3E_032 | 1/sN1/670:675, 1/sN1/709:714 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_6V3E_033 | 1/sN1/680:685, 1/sN1/696:704 | Kink-turn Not in a motif group | homologous IL_4LFB_031 IL_37722.1 | |
| IL_6V3E_034 | 1/sN1/771:775, 1/sN1/801:802 | Left turn Not in a motif group | homologous IL_5J7L_036 IL_29346.1 | |
| IL_6V3E_035 | 1/sN1/776:780, 1/sN1/796:800 | tSH-tHW-tHS Not in a motif group | homologous IL_6CZR_145 IL_17136.1 | |
| IL_6V3E_036 | 1/sN1/884:891, 1/sN1/902:907 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_5J7L_038 IL_24606.2 | |
| IL_6V3E_037 | 1/sN1/919:920, 1/sN1/1390:1392 | Single bulged A Not in a motif group | homologous IL_5J7L_039 IL_37497.2 | |
| IL_6V3E_038 | 1/sN1/922:924, 1/sN1/1387:1388 | Single bulged G Not in a motif group | homologous IL_6CZR_148 IL_00225.2 | |
| IL_6V3E_039 | 1/sN1/930:932, 1/sN1/1377:1381 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_6V3E_040 | 1/sN1/950:951, 1/sN1/1223:1225 | Minor groove platform Not in a motif group | geometric IL_4V88_445 IL_42622.2 | |
| IL_6V3E_041 | 1/sN1/995:997, 1/sN1/1037:1040 | No text annotation Not in a motif group | geometric IL_4WSM_372 IL_33061.1 | |
| IL_6V3E_042 | 1/sN1/1006:1007, 1/sN1/1015:1017 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_6V3E_043 | 1/sN1/1045:1047, 1/sN1/1205:1206 | Single bulged U Not in a motif group | geometric IL_4LFB_042 IL_83039.13 | |
| IL_6V3E_044 | 1/sN1/1047:1049, 1/sN1/1203:1205 | No text annotation Not in a motif group | geometric IL_5TBW_110 IL_51629.2 | |
| IL_6V3E_045 | 1/sN1/1049:1053, 1/sN1/1201:1203 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_6V3E_046 | 1/sN1/1054:1055, 1/sN1/1196:1200 | Minor groove platform Not in a motif group | homologous IL_5J7L_048 IL_93353.1 | |
| IL_6V3E_047 | 1/sN1/1057:1058, 1/sN1/1192:1194 | Single bulged A Not in a motif group | geometric IL_5J7L_049 IL_37497.2 | |
| IL_6V3E_048 | 1/sN1/1058:1060, 1/sN1/1190:1192 | No text annotation Not in a motif group | geometric IL_2O3Y_001 IL_95997.1 | |
| IL_6V3E_049 | 1/sN1/1085:1086, 1/sN1/1093:1095 | Single stack bend Not in a motif group | geometric IL_5J7L_269 IL_76488.2 | |
| IL_6V3E_050 | 1/sN1/1118:1125, 1/sN1/1141:1149 | No text annotation Not in a motif group | ||
| IL_6V3E_051 | 1/sN1/1126:1129, 1/sN1/1139:1140 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_6V3E_052 | 1/sN1/1155:1158, 1/sN1/1172:1178 | No text annotation Not in a motif group | geometric IL_5J7L_053 IL_42032.1 | |
| IL_6V3E_053 | 1/sN1/1244:1250, 1/sN1/1281:1287 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_6V3E_054 | 1/sN1/1252:1255, 1/sN1/1274:1279 | No text annotation Not in a motif group | homologous IL_5J7L_055 IL_75461.4 | |
| IL_6V3E_055 | 1/sN1/1256:1259, 1/sN1/1270:1273 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_461 IL_30621.2 | |
| IL_6V3E_056 | 1/sN1/1300:1305, 1/sN1/1326:1331 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_6V3E_057 | 1/sN1/1396:1398, 1/sN1/1498:1501 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
| IL_6V3E_058 | 1/sN1/1398:1401, 1/sN1/1494:1498 | No text annotation Not in a motif group | ||
| IL_6V3E_059 | 1/sN1/1402:1404, 1/sN1/1491:1493 | No text annotation Not in a motif group | geometric IL_4P43_004 IL_95997.1 | |
| IL_6V3E_060 | 1/sN1/1404:1406, 1/sN1/1488:1491 | No text annotation Not in a motif group | geometric IL_4V9F_072 IL_63450.2 | |
| IL_6V3E_061 | 1/sN1/1409:1411, 1/sN1/1483:1485 | No text annotation Not in a motif group | homologous IL_4LFB_059 IL_95997.1 | |
| IL_6V3E_062 | 1/sN1/1413:1416, 1/sN1/1478:1481 | Double sheared Not in a motif group | homologous IL_6CZR_169 IL_09705.9 | |
| IL_6V3E_063 | 1/sN1/1418:1420, 1/sN1/1474:1476 | No text annotation Not in a motif group | geometric IL_5TBW_115 IL_95997.1 | |
| IL_6V3E_064 | 1/sN1/1424:1426, 1/sN1/1468:1470 | No text annotation Not in a motif group | geometric IL_3GM7_005 IL_95997.1 | |
| IL_6V3E_065 | 1/sN1/1426:1432, 1/sN1/1463:1468 | No text annotation Not in a motif group | ||
| IL_6V3E_066 | 1/sN1/1436:1439, 1/sN1/1457:1459 | No text annotation Not in a motif group | geometric IL_4V9F_072 IL_63450.2 | |
| IL_6V3E_067 | 1/sN1/1442:1445, 1/sN1/1452:1454 | No text annotation Not in a motif group | homologous IL_5J7L_065 IL_02284.5 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6V3E_001 | 1/sN1/48:49, 1/sN1/357:363, 1/sN1/389:391 | No text annotation Not in a motif group | ||
| J3_6V3E_002 | 1/sN1/583:585, 1/sN1/648:651, 1/sN1/751:752 | No text annotation Not in a motif group | ||
| J3_6V3E_003 | 1/sN1/669:670, 1/sN1/714:722, 1/sN1/729:731 | No text annotation Not in a motif group | ||
| J3_6V3E_004 | 1/sN1/823:826, 1/sN1/854:858, 1/sN1/865:871 | No text annotation Not in a motif group | homologous J3_5J7L_004 NA | |
| J3_6V3E_005 | 1/sN1/940:943, 1/sN1/1232:1234, 1/sN1/1334:1337 | No text annotation Not in a motif group | homologous J3_4LFB_003 NA | |
| J3_6V3E_006 | 1/sN1/951:959, 1/sN1/970:981, 1/sN1/1218:1223 | No text annotation Not in a motif group | ||
| J3_6V3E_007 | 1/sN1/987:995, 1/sN1/1040:1044, 1/sN1/1207:1212 | No text annotation Not in a motif group | ||
| J3_6V3E_008 | 1/sN1/1060:1065, 1/sN1/1104:1110, 1/sN1/1184:1190 | No text annotation Not in a motif group | ||
| J3_6V3E_009 | 1/sN1/1070:1071, 1/sN1/1080:1085, 1/sN1/1095:1099 | No text annotation Not in a motif group | ||
| J3_6V3E_010 | 1/sN1/1112:1115, 1/sN1/1152:1155, 1/sN1/1178:1182 | No text annotation Not in a motif group | ||
| J3_6V3E_011 | 1/sN1/1234:1238, 1/sN1/1293:1300, 1/sN1/1331:1334 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Coloring options: