RNA 3D Hub //

6V3E Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6V3E_0011/sN1/14:24No text annotation
homologous
HL_4LFB_001
HL_89881.5
HL_6V3E_0021/sN1/73:94No text annotation
HL_6V3E_0031/sN1/154:159GNRA
homologous
HL_5J7L_003
HL_37824.7
HL_6V3E_0041/sN1/182:187UNCG
geometric
HL_6CK5_001
HL_34617.5
HL_6V3E_0051/sN1/199:210No text annotation
HL_6V3E_0061/sN1/255:263GNRA related
homologous
HL_5J7L_006
HL_84299.4
HL_6V3E_0071/sN1/292:297GNRA
homologous
HL_5J7L_007
HL_37824.7
HL_6V3E_0081/sN1/316:329No text annotation
homologous
HL_4LFB_008
HL_81205.3
HL_6V3E_0091/sN1/338:343UNCG
homologous
HL_4LFB_009
HL_34617.5
HL_6V3E_0101/sN1/375:380GNRA
homologous
HL_4LFB_010
HL_37824.7
HL_6V3E_0111/sN1/415:420UNCG
homologous
HL_5J7L_011
HL_34617.5
HL_6V3E_0121/sN1/458:466GNRA related
homologous
HL_5J7L_012
HL_81538.2
HL_6V3E_0331/sN1/519:524GNRA variation
homologous
HL_5J7L_205
HL_37824.7
HL_6V3E_0141/sN1/614:620No text annotation
homologous
HL_4LFB_014
HL_10453.3
HL_6V3E_0151/sN1/686:695No text annotation
homologous
HL_5J7L_015
HL_75293.5
HL_6V3E_0161/sN1/723:728GNRA
homologous
HL_5J7L_016
HL_37824.7
HL_6V3E_0171/sN1/783:793No text annotation
homologous
HL_6CZR_088
NA
HL_6V3E_0181/sN1/837:843Externally structured
geometric
HL_8C3A_022
NA
HL_6V3E_0191/sN1/859:864GNRA
homologous
HL_4LFB_019
HL_37824.7
HL_6V3E_0201/sN1/894:899GNRA
homologous
HL_4LFB_020
HL_37824.7
HL_6V3E_0211/sN1/960:969No text annotation
homologous
HL_4LFB_021
HL_50779.4
HL_6V3E_0221/sN1/1007:1015No text annotation
homologous
HL_6CZR_093
NA
HL_6V3E_0231/sN1/1025:1030No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_6V3E_0241/sN1/1073:1078GNRA
homologous
HL_5J7L_023
HL_37824.7
HL_6V3E_0251/sN1/1086:1093T-loop related
homologous
HL_6CZR_096
NA
HL_6V3E_0261/sN1/1131:1137No text annotation
homologous
HL_6CZR_097
NA
HL_6V3E_0271/sN1/1161:1169No text annotation
geometric
HL_2Y8W_001
HL_81100.2
HL_6V3E_0281/sN1/1262:1267GNRA
homologous
HL_5J7L_027
HL_37824.7
HL_6V3E_0291/sN1/1311:1320T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_02887.3
HL_6V3E_0301/sN1/1353:1363No text annotation
homologous
HL_4LFB_030
HL_06226.4
HL_6V3E_0351/sN1/1446:1451Mini UNCG
geometric
HL_4YAZ_004
HL_48778.2
HL_6V3E_0321/sN1/1512:1517GNRA
homologous
HL_6CZR_103
NA

Problematic loops

#loop idProblemSequence
HL_6V3E_013No text annotation
HL_6V3E_034No text annotation
HL_6V3E_031No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6V3E_0011/sN1/32:34,
1/sN1/549:550		Single bulged G
homologous
IL_5J7L_001
IL_00225.13
IL_6V3E_0021/sN1/46:47,
1/sN1/392:394		Single bulged A
homologous
IL_5J7L_002
IL_31462.5
IL_6V3E_0031/sN1/49:54,
1/sN1/355:357		No text annotation
homologous
IL_5J7L_003
IL_14177.2
IL_6V3E_0041/sN1/56:58,
1/sN1/352:353		Minor groove platform
homologous
IL_4LFB_004
IL_51454.2
IL_6V3E_0051/sN1/65:68,
1/sN1/99:100		Multiple bulged bases
homologous
IL_5J7L_005
IL_82107.4
IL_6V3E_0061/sN1/69:71,
1/sN1/96:98		Isolated non-canonical cWW pair
homologous
IL_6CZR_118
NA
IL_6V3E_0071/sN1/124:127,
1/sN1/227:229		Isolated non-canonical cWW pair
homologous
IL_5J7L_009
IL_57744.1
IL_6V3E_0081/sN1/128:132,
1/sN1/223:226		No text annotation
homologous
IL_4LFB_008
IL_64231.5
IL_6V3E_0091/sN1/140:142,
1/sN1/172:174		Isolated cWH basepair
homologous
IL_5J7L_011
IL_10167.5
IL_6V3E_0101/sN1/143:149,
1/sN1/164:171		tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
IL_80604.6
IL_6V3E_0111/sN1/238:243,
1/sN1/273:280		Kink-turn with non-sequential stacking
geometric
IL_4V88_402
NA
IL_6V3E_0121/sN1/245:248,
1/sN1/270:271		No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_6V3E_0131/sN1/288:289,
1/sN1/300:304		C-loop
homologous
IL_6CZR_125
NA
IL_6V3E_0141/sN1/363:365,
1/sN1/388:389		Single bulged U
homologous
IL_6CZR_126
NA
IL_6V3E_0151/sN1/367:371,
1/sN1/385:386		C-loop
homologous
IL_5J7L_018
IL_03109.3
IL_6V3E_0161/sN1/371:372,
1/sN1/383:385		Single bulged G
geometric
IL_5J7L_019
IL_00225.13
IL_6V3E_0171/sN1/405:412,
1/sN1/423:429		No text annotation
homologous
IL_5J7L_020
IL_28026.3
IL_6V3E_0181/sN1/436:438,
1/sN1/489:494		No text annotation
homologous
IL_5J7L_021
IL_33323.1
IL_6V3E_0191/sN1/442:446,
1/sN1/480:485		tSH-tHW-tWW
geometric
IL_5J7L_022
IL_88269.4
IL_6V3E_0201/sN1/446:449,
1/sN1/476:480		No text annotation
IL_6V3E_0211/sN1/452:453,
1/sN1/471:473		Single stack bend
geometric
IL_7A0S_005
IL_90729.1
IL_6V3E_0221/sN1/501:508,
1/sN1/537:538		SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_41203.4
IL_6V3E_0231/sN1/512:518,
1/sN1/525:533		Kink-turn related
homologous
IL_4LFB_021
IL_54177.4
IL_6V3E_0241/sN1/566:572,
1/sN1/877:878		No text annotation
homologous
IL_6CZR_134
NA
IL_6V3E_0251/sN1/577:581,
1/sN1/754:758		tSH-tHW-tHS
homologous
IL_6CZR_135
NA
IL_6V3E_0261/sN1/591:593,
1/sN1/641:642		Major groove platform
homologous
IL_5J7L_028
IL_48076.6
IL_6V3E_0271/sN1/594:595,
1/sN1/637:640		Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_68140.4
IL_6V3E_0681/sN1/602:609,
1/sN1/625:630		No text annotation
homologous
IL_5J7L_030
IL_78349.3
IL_6V3E_0781/sN1/651:652,
1/sN1/748:751		Major groove platform; stack outside cWW
geometric
IL_4LFB_027
IL_50694.7
IL_6V3E_0691/sN1/656:657,
1/sN1/742:744		Single stack bend
homologous
IL_5J7L_032
IL_26793.1
IL_6V3E_0311/sN1/659:663,
1/sN1/737:740		Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
IL_85033.2
IL_6V3E_0701/sN1/670:674,
1/sN1/710:714		Triple non-canonical cWW pairs
homologous
IL_4LFB_065
IL_49751.4
IL_6V3E_0791/sN1/681:685,
1/sN1/696:703		Kink-turn
homologous
IL_5J7L_035
IL_01488.3
IL_6V3E_0341/sN1/771:775,
1/sN1/801:802		Left turn
homologous
IL_5J7L_036
IL_29346.2
IL_6V3E_0351/sN1/776:780,
1/sN1/796:800		tSH-tHW-tHS
homologous
IL_6CZR_145
NA
IL_6V3E_0361/sN1/884:891,
1/sN1/902:907		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
IL_41756.4
IL_6V3E_0371/sN1/919:920,
1/sN1/1390:1392		Single bulged A
homologous
IL_5J7L_039
IL_31462.5
IL_6V3E_0381/sN1/922:924,
1/sN1/1387:1388		Single bulged G
homologous
IL_6CZR_148
NA
IL_6V3E_0391/sN1/930:932,
1/sN1/1377:1381		Minor groove platform
homologous
IL_5J7L_041
IL_47078.3
IL_6V3E_0401/sN1/950:951,
1/sN1/1223:1225		Minor groove platform
geometric
IL_4V88_445
NA
IL_6V3E_0801/sN1/995:996,
1/sN1/1038:1040		Single stack bend
homologous
IL_5J7L_044
IL_26793.1
IL_6V3E_0421/sN1/1006:1007,
1/sN1/1015:1017		Single stack bend
geometric
IL_7A0S_054
IL_26793.1
IL_6V3E_0431/sN1/1045:1047,
1/sN1/1205:1206		Single bulged U
geometric
IL_4LFB_042
IL_89505.4
IL_6V3E_0451/sN1/1049:1053,
1/sN1/1201:1203		Isolated cWS basepair
homologous
IL_4LFB_044
IL_76319.5
IL_6V3E_0461/sN1/1054:1055,
1/sN1/1196:1200		Minor groove platform
homologous
IL_5J7L_048
IL_95583.2
IL_6V3E_0471/sN1/1057:1058,
1/sN1/1192:1194		Single bulged A
geometric
IL_5J7L_049
IL_31462.5
IL_6V3E_0481/sN1/1058:1060,
1/sN1/1190:1192		Isolated non-canonical cWW pair
geometric
IL_2O3Y_001
IL_28037.2
IL_6V3E_0491/sN1/1085:1086,
1/sN1/1093:1095		Single stack bend
geometric
IL_5J7L_269
IL_26793.1
IL_6V3E_0811/sN1/1120:1125,
1/sN1/1141:1147		No text annotation
IL_6V3E_0511/sN1/1126:1129,
1/sN1/1139:1140		Minor groove platform
homologous
IL_5J7L_052
IL_15052.4
IL_6V3E_0521/sN1/1155:1158,
1/sN1/1172:1178		No text annotation
geometric
IL_5J7L_053
IL_42032.1
IL_6V3E_0531/sN1/1244:1250,
1/sN1/1281:1287		No text annotation
homologous
IL_4LFB_051
IL_09129.2
IL_6V3E_0541/sN1/1252:1255,
1/sN1/1274:1279		180 degree turn
homologous
IL_5J7L_055
IL_11344.2
IL_6V3E_0551/sN1/1256:1259,
1/sN1/1270:1273		Tandem non-canonical cWW pairs
geometric
IL_4V88_461
NA
IL_6V3E_0561/sN1/1300:1305,
1/sN1/1326:1331		No text annotation
geometric
IL_4LFB_055
IL_85536.2
IL_6V3E_0571/sN1/1396:1398,
1/sN1/1498:1501		No text annotation
geometric
IL_5J7L_058
IL_61438.4
IL_6V3E_0581/sN1/1398:1401,
1/sN1/1494:1498		No text annotation
homologous
IL_5J7L_059
IL_65718.4
IL_6V3E_0591/sN1/1402:1404,
1/sN1/1491:1493		Isolated non-canonical cWW pair
geometric
IL_4P43_004
NA
IL_6V3E_0751/sN1/1402:1406,
1/sN1/1488:1493		No text annotation
IL_6V3E_0601/sN1/1404:1406,
1/sN1/1488:1491		No text annotation
geometric
IL_4V9F_072
IL_55516.2
IL_6V3E_0611/sN1/1409:1411,
1/sN1/1483:1485		Isolated non-canonical cWW pair
homologous
IL_4LFB_059
IL_87907.2
IL_6V3E_0621/sN1/1413:1416,
1/sN1/1478:1481		Double sheared
homologous
IL_6CZR_169
NA
IL_6V3E_0631/sN1/1418:1420,
1/sN1/1474:1476		Isolated non-canonical cWW pair
geometric
IL_5TBW_115
NA
IL_6V3E_0761/sN1/1427:1432,
1/sN1/1463:1467		Triple sheared related
homologous
IL_5J7L_063
IL_80231.1
IL_6V3E_0661/sN1/1436:1439,
1/sN1/1457:1459		No text annotation
geometric
IL_4V9F_072
IL_55516.2
IL_6V3E_0671/sN1/1442:1445,
1/sN1/1452:1454		No text annotation
homologous
IL_5J7L_065
IL_31531.3

Problematic loops

#loop idProblemSequence
IL_6V3E_028No text annotation
IL_6V3E_029Major groove platform with extra pair
IL_6V3E_030No text annotation
IL_6V3E_032No text annotation
IL_6V3E_033Kink-turn
IL_6V3E_0719x7 Sarcin-Ricin with inserted C; G-bulge
IL_6V3E_072Tandem non-canonical cWW pairs
IL_6V3E_041No text annotation
IL_6V3E_044Isolated non-canonical cWW pair
IL_6V3E_073No text annotation
IL_6V3E_050No text annotation
IL_6V3E_074No text annotation
IL_6V3E_064Isolated non-canonical cWW pair
IL_6V3E_065No text annotation
IL_6V3E_077No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_6V3E_0011/sN1/48:49,
1/sN1/357:363,
1/sN1/389:391		No text annotation
homologous
J3_6CZR_015
NA
J3_6V3E_0121/sN1/48:54,
1/sN1/355:363,
1/sN1/389:391		No text annotation
homologous
J3_6CZR_058
NA
J3_6V3E_0021/sN1/583:585,
1/sN1/648:651,
1/sN1/751:752		No text annotation
homologous
J3_5J7L_002
J3_56052.5
J3_6V3E_0171/sN1/583:585,
1/sN1/648:652,
1/sN1/748:752		No text annotation
homologous
J3_4LFB_015
J3_17385.4
J3_6V3E_0031/sN1/669:670,
1/sN1/714:722,
1/sN1/729:731		No text annotation
homologous
J3_5J7L_003
J3_11934.4
J3_6V3E_0041/sN1/823:826,
1/sN1/854:858,
1/sN1/865:871		No text annotation
homologous
J3_5J7L_004
J3_85054.4
J3_6V3E_0141/sN1/933:936,
1/sN1/1341:1347,
1/sN1/1369:1376		No text annotation
homologous
J3_5J7L_052
J3_25303.4
J3_6V3E_0051/sN1/940:943,
1/sN1/1232:1234,
1/sN1/1334:1337		No text annotation
homologous
J3_4LFB_003
J3_52655.4
J3_6V3E_0061/sN1/951:959,
1/sN1/970:981,
1/sN1/1218:1223		No text annotation
J3_6V3E_0071/sN1/987:995,
1/sN1/1040:1044,
1/sN1/1207:1212		No text annotation
homologous
J3_6CZR_063
NA
J3_6V3E_0151/sN1/1000:1006,
1/sN1/1017:1025,
1/sN1/1030:1034		No text annotation
J3_6V3E_0081/sN1/1060:1065,
1/sN1/1104:1110,
1/sN1/1184:1190		No text annotation
homologous
J3_5J7L_008
J3_08394.3
J3_6V3E_0091/sN1/1070:1071,
1/sN1/1080:1085,
1/sN1/1095:1099		No text annotation
J3_6V3E_0181/sN1/1113:1115,
1/sN1/1152:1155,
1/sN1/1178:1181		No text annotation
geometric
J3_5J7L_010
J3_82365.4
J3_6V3E_0191/sN1/1113:1115,
1/sN1/1152:1158,
1/sN1/1172:1181		No text annotation
homologous
J3_5J7L_054
J3_17791.2
J3_6V3E_0111/sN1/1234:1238,
1/sN1/1293:1300,
1/sN1/1331:1334		No text annotation
homologous
J3_4LFB_009
J3_37047.6
J4_6V3E_0011/sN1/111:118,
1/sN1/235:236,
1/sN1/282:285,
1/sN1/307:308		No text annotation
homologous
J4_5J7L_001
J4_35578.3
J4_6V3E_0021/sN1/139:140,
1/sN1/174:180,
1/sN1/189:194,
1/sN1/215:216		No text annotation
J4_6V3E_0031/sN1/572:574,
1/sN1/761:766,
1/sN1/807:818,
1/sN1/876:877		No text annotation
homologous
J4_5J7L_003
J4_61885.6
J5_6V3E_0011/sN1/38:41,
1/sN1/399:402,
1/sN1/432:436,
1/sN1/494:497,
1/sN1/542:545		No text annotation
homologous
J5_5J7L_001
J5_92941.1
J5_6V3E_0021/sN1/38:41,
1/sN1/399:402,
1/sN1/432:438,
1/sN1/489:497,
1/sN1/542:545		No text annotation
homologous
J5_5J7L_002
J5_67416.1
J5_6V3E_0031/sN1/60:63,
1/sN1/102:109,
1/sN1/310:312,
1/sN1/333:335,
1/sN1/346:350		No text annotation
homologous
J5_4LFB_002
J5_59910.6

Problematic loops

#loop idProblemSequence
J3_6V3E_013No text annotation
J3_6V3E_010No text annotation
J3_6V3E_016No text annotation

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