1FKA Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1FKA_003 | 1/A/153:158 | No text annotation Not in a motif group | ||
| HL_1FKA_004 | 1/A/187:192 | GNRA Not in a motif group | homologous HL_5J7L_004 HL_42097.1 | |
| HL_1FKA_005 | 1/A/208:212 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_56691.2 | |
| HL_1FKA_007 | 1/A/292:297 | No text annotation Not in a motif group | ||
| HL_1FKA_011 | 1/A/415:420 | No text annotation Not in a motif group | ||
| HL_1FKA_012 | 1/A/452:460 | No text annotation Not in a motif group | ||
| HL_1FKA_014 | 1/A/601:607 | No text annotation Not in a motif group | homologous HL_5J7L_014 HL_26881.1 | |
| HL_1FKA_015 | 1/A/673:682 | No text annotation Not in a motif group | homologous HL_5J7L_015 HL_12326.1 | |
| HL_1FKA_016 | 1/A/710:715 | Other HL Not in a motif group | homologous HL_5J7L_016 HL_87030.2 | |
| HL_1FKA_021 | 1/A/1006:1015 | No text annotation Not in a motif group | ||
| HL_1FKA_023 | 1/A/1146:1151 | No text annotation Not in a motif group | ||
| HL_1FKA_024 | 1/A/1243:1248 | GNRA Not in a motif group | geometric HL_4LFB_027 HL_42097.1 | |
| HL_1FKA_028 | 1/A/1489:1494 | GNRA Not in a motif group | geometric HL_5TBW_030 HL_42097.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1FKA_001 | No text annotation | ||
| HL_1FKA_002 | No text annotation | ||
| HL_1FKA_006 | No text annotation | ||
| HL_1FKA_008 | No text annotation | ||
| HL_1FKA_009 | No text annotation | ||
| HL_1FKA_010 | No text annotation | ||
| HL_1FKA_013 | No text annotation | ||
| HL_1FKA_017 | No text annotation | ||
| HL_1FKA_018 | No text annotation | ||
| HL_1FKA_019 | No text annotation | ||
| HL_1FKA_020 | No text annotation | ||
| HL_1FKA_022 | No text annotation | ||
| HL_1FKA_025 | No text annotation | ||
| HL_1FKA_026 | No text annotation | ||
| HL_1FKA_027 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1FKA_002 | 1/A/62:64, 1/A/98:100 | No text annotation Not in a motif group | geometric IL_7A0S_026 IL_51629.2 | |
| IL_1FKA_003 | 1/A/64:67, 1/A/97:98 | No text annotation Not in a motif group | ||
| IL_1FKA_004 | 1/A/68:72, 1/A/92:96 | No text annotation Not in a motif group | geometric IL_5TBW_121 IL_05145.2 | |
| IL_1FKA_005 | 1/A/73:76, 1/A/88:91 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1MFQ_004 IL_30621.2 | |
| IL_1FKA_006 | 1/A/77:79, 1/A/85:87 | No text annotation Not in a motif group | ||
| IL_1FKA_007 | 1/A/118:120, 1/A/231:233 | No text annotation Not in a motif group | geometric IL_4M4O_001 IL_95997.1 | |
| IL_1FKA_011 | 1/A/180:183, 1/A/196:199 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_30621.2 | |
| IL_1FKA_012 | 1/A/183:185, 1/A/194:196 | UG cWW Not in a motif group | geometric IL_4LFB_061 IL_95997.1 | |
| IL_1FKA_018 | 1/A/371:373, 1/A/382:384 | Single bulged G, near cWW Not in a motif group | homologous IL_6CZR_128 IL_52767.2 | |
| IL_1FKA_022 | 1/A/564:569, 1/A/740:745 | No text annotation Not in a motif group | ||
| IL_1FKA_023 | 1/A/576:580, 1/A/628:631 | No text annotation Not in a motif group | geometric IL_1J2B_001 IL_58686.2 | |
| IL_1FKA_024 | 1/A/581:583, 1/A/623:627 | 8-nt loop receptor Not in a motif group | geometric IL_6CK5_002 IL_93341.1 | |
| IL_1FKA_025 | 1/A/586:588, 1/A/618:620 | No text annotation Not in a motif group | geometric IL_7A0S_026 IL_51629.2 | |
| IL_1FKA_026 | 1/A/588:596, 1/A/612:618 | No text annotation Not in a motif group | ||
| IL_1FKA_027 | 1/A/641:642, 1/A/731:733 | Major groove platform Not in a motif group | homologous IL_6CZR_140 IL_27635.1 | |
| IL_1FKA_028 | 1/A/645:650, 1/A/724:728 | No text annotation Not in a motif group | ||
| IL_1FKA_030 | 1/A/757:759, 1/A/789:790 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_76488.2 | |
| IL_1FKA_031 | 1/A/763:767, 1/A/783:787 | tSH-tHW-tHS Not in a motif group | homologous IL_6CZR_145 IL_17136.1 | |
| IL_1FKA_033 | 1/A/814:816, 1/A/832:834 | No text annotation Not in a motif group | geometric IL_4YHW_001 IL_95997.1 | |
| IL_1FKA_034 | 1/A/816:818, 1/A/830:832 | No text annotation Not in a motif group | geometric IL_4WF9_042 IL_95997.1 | |
| IL_1FKA_035 | 1/A/818:821, 1/A/827:830 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1JID_002 IL_30621.2 | |
| IL_1FKA_038 | 1/A/918:921, 1/A/1318:1321 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4EYA_010 IL_30621.2 | |
| IL_1FKA_040 | 1/A/987:989, 1/A/998:1000 | No text annotation Not in a motif group | geometric IL_7A0S_031 IL_95997.1 | |
| IL_1FKA_044 | 1/A/1110:1113, 1/A/1123:1124 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_1FKA_045 | 1/A/1237:1240, 1/A/1252:1254 | No text annotation Not in a motif group | ||
| IL_1FKA_046 | 1/A/1240:1243, 1/A/1248:1252 | No text annotation Not in a motif group | ||
| IL_1FKA_047 | 1/A/1384:1386, 1/A/1468:1470 | No text annotation Not in a motif group | geometric IL_4V88_465 IL_95997.1 | |
| IL_1FKA_048 | 1/A/1386:1388, 1/A/1465:1468 | No text annotation Not in a motif group | ||
| IL_1FKA_049 | 1/A/1390:1399, 1/A/1454:1463 | No text annotation Not in a motif group | ||
| IL_1FKA_050 | 1/A/1403:1405, 1/A/1448:1450 | UG cWW Not in a motif group | homologous IL_4LFB_061 IL_95997.1 | |
| IL_1FKA_052 | 1/A/1414:1416, 1/A/1438:1440 | No text annotation Not in a motif group | geometric IL_3LA5_001 IL_95997.1 | |
| IL_1FKA_053 | 1/A/1483:1485, 1/A/1498:1500 | No text annotation Not in a motif group | geometric IL_7A0S_026 IL_51629.2 | |
| IL_1FKA_054 | 1/A/1485:1488, 1/A/1495:1498 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4K27_001 IL_30621.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1FKA_001 | No text annotation | ||
| IL_1FKA_008 | No text annotation | ||
| IL_1FKA_009 | No text annotation | ||
| IL_1FKA_010 | No text annotation | ||
| IL_1FKA_013 | No text annotation | ||
| IL_1FKA_014 | No text annotation | ||
| IL_1FKA_015 | No text annotation | ||
| IL_1FKA_016 | No text annotation | ||
| IL_1FKA_017 | No text annotation | ||
| IL_1FKA_019 | No text annotation | ||
| IL_1FKA_020 | No text annotation | ||
| IL_1FKA_021 | No text annotation | ||
| IL_1FKA_029 | No text annotation | ||
| IL_1FKA_032 | No text annotation | ||
| IL_1FKA_036 | No text annotation | ||
| IL_1FKA_037 | No text annotation | ||
| IL_1FKA_039 | No text annotation | ||
| IL_1FKA_041 | No text annotation | ||
| IL_1FKA_042 | Tandem non-canonical cWW pairs | ||
| IL_1FKA_043 | No text annotation | ||
| IL_1FKA_051 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_1FKA_001 | No text annotation | ||
| J3_1FKA_002 | No text annotation | ||
| J3_1FKA_003 | No text annotation | ||
| J3_1FKA_004 | No text annotation | ||
| J3_1FKA_005 | No text annotation |
Coloring options: