RNA 3D Hub //

1FKA Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_1FKA_0031/A/153:158No text annotation
HL_1FKA_0041/A/187:192GNRA
homologous
HL_5J7L_004
HL_37824.7
HL_1FKA_0051/A/208:212Mini UNCG
homologous
HL_4LFB_005
HL_48778.2
HL_1FKA_0301/A/288:304No text annotation
HL_1FKA_0071/A/292:297No text annotation
HL_1FKA_0311/A/316:329No text annotation
HL_1FKA_0461/A/338:343No text annotation
HL_1FKA_0471/A/416:419No text annotation
HL_1FKA_0121/A/452:460No text annotation
HL_1FKA_0341/A/491:508No text annotation
HL_1FKA_0141/A/601:607No text annotation
homologous
HL_5J7L_014
HL_10453.3
HL_1FKA_0481/A/667:691No text annotation
HL_1FKA_0151/A/673:682No text annotation
homologous
HL_5J7L_015
HL_75293.5
HL_1FKA_0161/A/710:715GNRA
homologous
HL_5J7L_016
HL_37824.7
HL_1FKA_0361/A/822:826No text annotation
HL_1FKA_0381/A/987:1000No text annotation
HL_1FKA_0211/A/1006:1015No text annotation
HL_1FKA_0391/A/1057:1062No text annotation
HL_1FKA_0401/A/1070:1077No text annotation
HL_1FKA_0411/A/1115:1121No text annotation
HL_1FKA_0231/A/1146:1151No text annotation
geometric
HL_4V88_198
NA
HL_1FKA_0421/A/1240:1252No text annotation
HL_1FKA_0241/A/1243:1248GNRA
geometric
HL_4LFB_027
HL_37824.7
HL_1FKA_0431/A/1292:1301No text annotation
HL_1FKA_0441/A/1334:1345No text annotation
HL_1FKA_0491/A/1418:1436No text annotation
HL_1FKA_0281/A/1489:1494GNRA
geometric
HL_5TBW_030
NA

Problematic loops

#loop idProblemSequence
HL_1FKA_001No text annotation
HL_1FKA_002No text annotation
HL_1FKA_029No text annotation
HL_1FKA_006No text annotation
HL_1FKA_008No text annotation
HL_1FKA_009No text annotation
HL_1FKA_032No text annotation
HL_1FKA_010No text annotation
HL_1FKA_011No text annotation
HL_1FKA_033No text annotation
HL_1FKA_013No text annotation
HL_1FKA_035No text annotation
HL_1FKA_017No text annotation
HL_1FKA_018No text annotation
HL_1FKA_037No text annotation
HL_1FKA_019No text annotation
HL_1FKA_020No text annotation
HL_1FKA_022No text annotation
HL_1FKA_025No text annotation
HL_1FKA_026No text annotation
HL_1FKA_045No text annotation
HL_1FKA_027No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_1FKA_0771/A/45:58,
1/A/351:394		No text annotation
IL_1FKA_0031/A/64:67,
1/A/97:98		Multiple bulged bases
homologous
IL_4LFB_005
IL_82107.4
IL_1FKA_0781/A/64:70,
1/A/94:98		No text annotation
IL_1FKA_0041/A/68:72,
1/A/92:96		No text annotation
geometric
IL_5TBW_121
NA
IL_1FKA_0581/A/122:126,
1/A/227:229		No text annotation
IL_1FKA_0791/A/127:131,
1/A/223:226		No text annotation
IL_1FKA_0801/A/143:148,
1/A/163:169		No text annotation
IL_1FKA_0111/A/180:183,
1/A/196:199		Tandem non-canonical cWW pairs
geometric
IL_1D4R_001
IL_85033.2
IL_1FKA_0811/A/245:248,
1/A/270:271		No text annotation
IL_1FKA_0821/A/488:490,
1/A/509:525		No text annotation
IL_1FKA_0831/A/564:568,
1/A/741:745		No text annotation
IL_1FKA_0841/A/577:580,
1/A/628:630		No text annotation
geometric
IL_8CRE_417
IL_99358.1
IL_1FKA_0851/A/581:582,
1/A/624:627		Major groove minor groove platform; mini C-loop
homologous
IL_6CZR_137
NA
IL_1FKA_0861/A/589:596,
1/A/612:617		No text annotation
homologous
IL_6CZR_408
NA
IL_1FKA_0271/A/641:642,
1/A/731:733		Major groove platform
homologous
IL_6CZR_140
NA
IL_1FKA_0871/A/641:643,
1/A/730:733		No text annotation
geometric
IL_4V9F_072
IL_55516.2
IL_1FKA_0671/A/646:650,
1/A/724:727		Tandem non-canonical cWW pairs
homologous
IL_6CZR_141
NA
IL_1FKA_0301/A/757:759,
1/A/789:790		Single stack bend
geometric
IL_4C7O_002
IL_90729.1
IL_1FKA_0691/A/759:762,
1/A/788:789		No text annotation
IL_1FKA_0311/A/763:767,
1/A/783:787		tSH-tHW-tHS
homologous
IL_6CZR_145
NA
IL_1FKA_0701/A/763:768,
1/A/782:787		tSH-tHW-tHS
homologous
IL_6CZR_145
NA
IL_1FKA_0881/A/981:985,
1/A/1002:1019		No text annotation
IL_1FKA_0731/A/1104:1109,
1/A/1125:1131		No text annotation
IL_1FKA_0441/A/1110:1113,
1/A/1123:1124		Minor groove platform
homologous
IL_5J7L_052
IL_15052.4
IL_1FKA_0751/A/1224:1240,
1/A/1252:1271		No text annotation
IL_1FKA_0451/A/1237:1240,
1/A/1252:1254		No text annotation
geometric
IL_7A0S_112
IL_07785.1
IL_1FKA_0461/A/1240:1243,
1/A/1248:1252		No text annotation
IL_1FKA_0471/A/1384:1386,
1/A/1468:1470		Isolated non-canonical cWW pair
geometric
IL_4V88_465
NA
IL_1FKA_0481/A/1386:1388,
1/A/1465:1468		No text annotation
IL_1FKA_0491/A/1390:1399,
1/A/1454:1463		No text annotation
IL_1FKA_0761/A/1409:1414,
1/A/1440:1444		No text annotation
IL_1FKA_0521/A/1414:1416,
1/A/1438:1440		No text annotation
geometric
IL_3LA5_001
NA

Problematic loops

#loop idProblemSequence
IL_1FKA_055No text annotation
IL_1FKA_001No text annotation
IL_1FKA_056No text annotation
IL_1FKA_002Isolated non-canonical cWW pair
IL_1FKA_057No text annotation
IL_1FKA_005Tandem non-canonical cWW pairs
IL_1FKA_006Isolated non-canonical cWW pair
IL_1FKA_007Isolated non-canonical cWW pair
IL_1FKA_008No text annotation
IL_1FKA_009No text annotation
IL_1FKA_059No text annotation
IL_1FKA_010No text annotation
IL_1FKA_060No text annotation
IL_1FKA_012Isolated non-canonical cWW pair
IL_1FKA_013No text annotation
IL_1FKA_014No text annotation
IL_1FKA_061No text annotation
IL_1FKA_015No text annotation
IL_1FKA_016No text annotation
IL_1FKA_017No text annotation
IL_1FKA_018Single bulged G, near cWW
IL_1FKA_019No text annotation
IL_1FKA_062No text annotation
IL_1FKA_020Isolated non-canonical cWW pair
IL_1FKA_063No text annotation
IL_1FKA_021No text annotation
IL_1FKA_022No text annotation
IL_1FKA_023No text annotation
IL_1FKA_0248-nt loop receptor
IL_1FKA_064No text annotation
IL_1FKA_025Isolated non-canonical cWW pair
IL_1FKA_065No text annotation
IL_1FKA_026No text annotation
IL_1FKA_066No text annotation
IL_1FKA_028Partly complementary
IL_1FKA_029No text annotation
IL_1FKA_068No text annotation
IL_1FKA_071No text annotation
IL_1FKA_032No text annotation
IL_1FKA_033Isolated non-canonical cWW pair
IL_1FKA_034Isolated non-canonical cWW pair
IL_1FKA_035Tandem non-canonical cWW pairs
IL_1FKA_036No text annotation
IL_1FKA_037No text annotation
IL_1FKA_038Tandem non-canonical cWW pairs
IL_1FKA_039Isolated non-canonical cWW pair
IL_1FKA_072No text annotation
IL_1FKA_040Isolated non-canonical cWW pair
IL_1FKA_041No text annotation
IL_1FKA_042Tandem non-canonical cWW pairs
IL_1FKA_043No text annotation
IL_1FKA_074No text annotation
IL_1FKA_050Isolated non-canonical cWW pair
IL_1FKA_051No text annotation
IL_1FKA_053Isolated non-canonical cWW pair
IL_1FKA_054Tandem non-canonical cWW pairs

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_1FKA_0071/A/656:661,
1/A/697:709,
1/A/716:718		No text annotation
J3_1FKA_0101/A/1054:1055,
1/A/1064:1068,
1/A/1079:1083		No text annotation
J4_1FKA_0051/A/35:40,
1/A/399:402,
1/A/432:484,
1/A/529:534		No text annotation
J4_1FKA_0061/A/109:116,
1/A/235:243,
1/A/273:285,
1/A/307:308		No text annotation
J4_1FKA_0071/A/136:139,
1/A/173:179,
1/A/200:205,
1/A/215:218		No text annotation
J4_1FKA_0081/A/553:561,
1/A/748:754,
1/A/793:808,
1/A/854:859		No text annotation
J5_1FKA_0031/A/59:62,
1/A/100:107,
1/A/310:312,
1/A/333:335,
1/A/346:350		No text annotation
J5_1FKA_0041/A/903:924,
1/A/1215:1221,
1/A/1274:1286,
1/A/1307:1328,
1/A/1351:1370		No text annotation

Problematic loops

#loop idProblemSequence
J3_1FKA_001No text annotation
J3_1FKA_002No text annotation
J3_1FKA_006No text annotation
J3_1FKA_003No text annotation
J3_1FKA_008No text annotation
J3_1FKA_004No text annotation
J3_1FKA_005No text annotation
J3_1FKA_009No text annotation
J4_1FKA_001No text annotation
J4_1FKA_002No text annotation
J4_1FKA_003No text annotation
J4_1FKA_004No text annotation
J5_1FKA_001No text annotation
J5_1FKA_002No text annotation

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