1FKA | Motifs

Valid loops

#	loop id	location	motif
1	IL_1FKA_002 ➜	1/A/62:64,1/A/98:100	NA
2	IL_1FKA_003 ➜	1/A/64:67,1/A/97:98	NA
3	IL_1FKA_004 ➜	1/A/68:72,1/A/92:96	NA
4	IL_1FKA_005 ➜	1/A/73:76,1/A/88:91	NA
5	IL_1FKA_006 ➜	1/A/77:79,1/A/85:87	NA
6	IL_1FKA_007 ➜	1/A/118:120,1/A/231:233	NA
7	IL_1FKA_011 ➜	1/A/180:183,1/A/196:199	NA
8	IL_1FKA_012 ➜	1/A/183:185,1/A/194:196	NA
9	IL_1FKA_018 ➜	1/A/371:373,1/A/382:384	NA
10	IL_1FKA_022 ➜	1/A/564:569,1/A/740:745	NA
11	IL_1FKA_023 ➜	1/A/576:580,1/A/628:631	NA
12	IL_1FKA_024 ➜	1/A/581:583,1/A/623:627	NA
13	IL_1FKA_025 ➜	1/A/586:588,1/A/618:620	NA
14	IL_1FKA_026 ➜	1/A/588:596,1/A/612:618	NA
15	IL_1FKA_027 ➜	1/A/641:642,1/A/731:733	NA
16	IL_1FKA_028 ➜	1/A/645:650,1/A/724:728	NA
17	IL_1FKA_030 ➜	1/A/757:759,1/A/789:790	NA
18	IL_1FKA_031 ➜	1/A/763:767,1/A/783:787	NA
19	IL_1FKA_033 ➜	1/A/814:816,1/A/832:834	NA
20	IL_1FKA_034 ➜	1/A/816:818,1/A/830:832	NA
21	IL_1FKA_035 ➜	1/A/818:821,1/A/827:830	NA
22	IL_1FKA_038 ➜	1/A/918:921,1/A/1318:1321	NA
23	IL_1FKA_040 ➜	1/A/987:989,1/A/998:1000	NA
24	IL_1FKA_044 ➜	1/A/1110:1113,1/A/1123:1124	NA
25	IL_1FKA_045 ➜	1/A/1237:1240,1/A/1252:1254	NA
26	IL_1FKA_046 ➜	1/A/1240:1243,1/A/1248:1252	NA
27	IL_1FKA_047 ➜	1/A/1384:1386,1/A/1468:1470	NA
28	IL_1FKA_048 ➜	1/A/1386:1388,1/A/1465:1468	NA
29	IL_1FKA_049 ➜	1/A/1390:1399,1/A/1454:1463	NA
30	IL_1FKA_050 ➜	1/A/1403:1405,1/A/1448:1450	NA
31	IL_1FKA_052 ➜	1/A/1414:1416,1/A/1438:1440	NA
32	IL_1FKA_053 ➜	1/A/1483:1485,1/A/1498:1500	NA
33	IL_1FKA_054 ➜	1/A/1485:1488,1/A/1495:1498	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_1FKA_001 ➜	incomplete nts	30, 31, 33, 34, 535, 536, 537, 538
2	IL_1FKA_008 ➜	incomplete nts	122, 123, 126, 127, 226, 227, 228, 229
3	IL_1FKA_009 ➜	incomplete nts	127, 131, 132, 222, 223, 224, 225, 226
4	IL_1FKA_010 ➜	incomplete nts	143, 144, 145, 146, 147, 148, 149, 162, 163, 164, 169
5	IL_1FKA_013 ➜	incomplete nts	236, 237, 238, 243, 273, 280, 281, 282
6	IL_1FKA_014 ➜	incomplete nts	244, 245, 248, 249, 269, 270, 271, 272
7	IL_1FKA_015 ➜	incomplete nts	288, 289, 290, 299, 300, 301, 303, 304
8	IL_1FKA_016 ➜	complementary	CCG,CGG
9	IL_1FKA_017 ➜	incomplete nts	367, 368, 369, 370, 371, 384, 386
10	IL_1FKA_019 ➜	incomplete nts	405, 406, 410, 411, 412, 413, 422, 426, 427, 428, 429
11	IL_1FKA_020 ➜	complementary	GCC,GGC
12	IL_1FKA_021 ➜	incomplete nts	488, 489, 490, 491, 508, 509, 510, 511, 512, 513, 514, 520, 521, 522, 523, 524, 525
13	IL_1FKA_029 ➜	incomplete nts	667, 668, 669, 670, 671, 672, 673, 682, 683, 691
14	IL_1FKA_032 ➜	incomplete nts	810, 811, 814, 834, 835, 836, 837, 838, 839, 840, 846, 851, 852
15	IL_1FKA_036 ➜	incomplete nts	864, 872, 883, 884, 885, 886, 887, 888
16	IL_1FKA_037 ➜	incomplete nts	902, 903, 905, 906, 907, 908, 1366, 1367, 1368, 1369, 1370, 1371
17	IL_1FKA_039 ➜	complementary	GUG,CAC
18	IL_1FKA_041 ➜	missing nts	1032, 1033, 1040, 1041, 1042, 1043, 1044, 1173, 1174, 1175, 1176, 1177, 1178, 1179, 1180, 1181, 1182, 1183, 1184, 1185, 1186, 1187
19	IL_1FKA_042 ➜	complementary	CUCG,CGAG
20	IL_1FKA_043 ➜	incomplete nts	1104, 1109, 1125, 1128, 1129, 1130, 1131
21	IL_1FKA_051 ➜	incomplete nts	1409, 1412, 1413, 1414, 1440, 1441, 1442, 1443, 1444

Valid loops

#	loop id	location	motif
1	HL_1FKA_003 ➜	1/A/153:158	NA
2	HL_1FKA_004 ➜	1/A/187:192	NA
3	HL_1FKA_005 ➜	1/A/208:212	NA
4	HL_1FKA_007 ➜	1/A/292:297	NA
5	HL_1FKA_011 ➜	1/A/415:420	NA
6	HL_1FKA_012 ➜	1/A/452:460	NA
7	HL_1FKA_014 ➜	1/A/601:607	NA
8	HL_1FKA_015 ➜	1/A/673:682	NA
9	HL_1FKA_016 ➜	1/A/710:715	NA
10	HL_1FKA_021 ➜	1/A/1006:1015	NA
11	HL_1FKA_023 ➜	1/A/1146:1151	NA
12	HL_1FKA_024 ➜	1/A/1243:1248	NA
13	HL_1FKA_028 ➜	1/A/1489:1494	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_1FKA_001 ➜	incomplete nts	13, 14, 16, 17, 18, 19, 20, 21, 22, 23
2	HL_1FKA_002 ➜	missing nts	79, 80, 84, 85
3	HL_1FKA_006 ➜	incomplete nts	255, 256, 257, 261, 262, 263
4	HL_1FKA_008 ➜	incomplete nts	316, 317, 318, 319, 320, 321, 322, 323, 324, 326, 327, 328, 329
5	HL_1FKA_009 ➜	incomplete nts	336, 337, 338, 339, 343, 344, 345
6	HL_1FKA_010 ➜	incomplete nts	374, 375, 380, 381
7	HL_1FKA_013 ➜	incomplete nts	491, 495, 496, 497, 498, 499, 500, 502, 503, 504, 505, 506, 508
8	HL_1FKA_017 ➜	missing nts	770, 771, 772, 773, 780
9	HL_1FKA_018 ➜	incomplete nts	822, 823, 826
10	HL_1FKA_019 ➜	incomplete nts	874, 880, 881
11	HL_1FKA_020 ➜	incomplete nts	990, 991, 992, 996, 997
12	HL_1FKA_022 ➜	incomplete nts	1070, 1071, 1072, 1077
13	HL_1FKA_025 ➜	incomplete nts	1292, 1293, 1294, 1296, 1297, 1301
14	HL_1FKA_026 ➜	incomplete nts	1334, 1344, 1345
15	HL_1FKA_027 ➜	incomplete nts	1419, 1420, 1426, 1427, 1431, 1432, 1433, 1434, 1435

Valid loops

No loops found

Problematic loops

#	loop id	Problem	Sequence
1	J3_1FKA_001 ➜	incomplete nts	45, 46, 47, 48, 53, 54, 55, 56, 57, 58, 59, 350, 351, 352, 353, 354, 355, 356, 357, 358, 359, 360, 361, 362, 363, 364, 365, 388, 389, 390, 391, 392, 393, 394
2	J3_1FKA_002 ➜	incomplete nts	570, 571, 572, 635, 636, 637, 638, 639, 735, 736, 739
3	J3_1FKA_003 ➜	incomplete nts	981, 984, 985, 1002, 1004, 1005, 1006, 1015, 1016, 1017, 1018, 1019
4	J3_1FKA_004 ➜	incomplete nts	1053, 1054, 1055, 1056, 1063, 1064, 1067, 1068, 1079, 1080, 1083, 1084
5	J3_1FKA_005 ➜	incomplete nts	1097, 1098, 1099, 1136, 1137, 1141, 1142, 1155, 1156, 1157, 1158, 1159, 1160, 1164