RNA 3D Hub //

7OHU Internal, Hairpin and 3-way Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7OHU_0051/1/194:201No text annotation
Not in a motif group		homologous
HL_8C3A_005
HL_89380.2
HL_7OHU_0061/1/208:212No text annotation
Not in a motif group		homologous
HL_5TBW_006
HL_98984.2
HL_7OHU_0071/1/216:224No text annotation
Not in a motif group		homologous
HL_8C3A_007
HL_08002.8
HL_7OHU_0141/1/599:604GNRA
Not in a motif group		homologous
HL_5TBW_013
HL_42097.1
HL_7OHU_0351/1/3194:3197No text annotation
Not in a motif group		homologous
HL_5TBW_068
HL_98426.1

Problematic loops

#loop idProblemSequence
HL_7OHU_001No text annotation
HL_7OHU_002No text annotation
HL_7OHU_003No text annotation
HL_7OHU_004No text annotation
HL_7OHU_008No text annotation
HL_7OHU_009No text annotation
HL_7OHU_010No text annotation
HL_7OHU_011No text annotation
HL_7OHU_012No text annotation
HL_7OHU_013No text annotation
HL_7OHU_015No text annotation
HL_7OHU_016No text annotation
HL_7OHU_017GNRA
HL_7OHU_018No text annotation
HL_7OHU_019No text annotation
HL_7OHU_020No text annotation
HL_7OHU_021No text annotation
HL_7OHU_022No text annotation
HL_7OHU_023No text annotation
HL_7OHU_024No text annotation
HL_7OHU_025No text annotation
HL_7OHU_026No text annotation
HL_7OHU_027No text annotation
HL_7OHU_028No text annotation
HL_7OHU_029No text annotation
HL_7OHU_030No text annotation
HL_7OHU_031No text annotation
HL_7OHU_032GNRA
HL_7OHU_033No text annotation
HL_7OHU_034No text annotation
HL_7OHU_036No text annotation
HL_7OHU_037No text annotation
HL_7OHU_038No text annotation
HL_7OHU_039No text annotation
HL_7OHU_040No text annotation
HL_7OHU_041No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7OHU_0111/1/337:339,
1/2/25:26		Single bulged A
Not in a motif group		homologous
IL_5TBW_013
IL_37497.2
IL_7OHU_0121/1/376:379,
1/1/390:403		No text annotation
Not in a motif group		homologous
IL_8C3A_015
IL_60992.6
IL_7OHU_0131/1/404:410,
1/2/13:19		No text annotation
Not in a motif group		homologous
IL_8C3A_016
IL_66414.6
IL_7OHU_0161/1/512:513,
1/1/577:579		No text annotation
Not in a motif group		homologous
IL_8C3A_020
IL_37497.2
IL_7OHU_0171/1/517:525,
1/1/567:573		No text annotation
Not in a motif group		homologous
IL_5TBW_019
IL_23992.1
IL_7OHU_0181/1/531:538,
1/1/553:561		No text annotation
Not in a motif group		homologous
IL_5TBW_020
IL_07703.1
IL_7OHU_0201/1/680:684,
1/1/696:700		No text annotation
Not in a motif group		homologous
IL_5TBW_022
IL_74284.1
IL_7OHU_0261/1/956:958,
1/1/964:965		Single stack bend
Not in a motif group		geometric
IL_5J7L_269
IL_76488.2
IL_7OHU_0271/1/969:970,
1/1/1111:1113		No text annotation
Not in a motif group		homologous
IL_8C3A_038
IL_76488.2
IL_7OHU_0291/1/983:985,
1/1/1099:1100		No text annotation
Not in a motif group		homologous
IL_8C3A_040
IL_00225.2
IL_7OHU_0301/1/1120:1122,
1/1/1136:1138		No text annotation
Not in a motif group		homologous
IL_8C3A_049
IL_95997.1
IL_7OHU_0311/1/1167:1171,
1/1/1328:1332		No text annotation
Not in a motif group		homologous
IL_8C3A_051
IL_89002.2
IL_7OHU_0321/1/1173:1180,
1/1/1325:1326		Multiple bulged bases
Not in a motif group		geometric
IL_1R3E_001
IL_16396.2
IL_7OHU_0331/1/1180:1182,
1/1/1324:1325		Single bulged U
Not in a motif group		homologous
IL_5TBW_050
IL_83039.13
IL_7OHU_0401/1/1376:1378,
1/1/1428:1431		No text annotation
Not in a motif group		homologous
IL_8C3A_061
IL_52767.2
IL_7OHU_0411/1/1385:1387,
1/1/1420:1421		No text annotation
Not in a motif group		homologous
IL_8C3A_062
IL_37497.2
IL_7OHU_0541/1/3164:3166,
1/1/3284:3286		No text annotation
Not in a motif group		homologous
IL_8C3A_130
IL_95997.1
IL_7OHU_0561/1/3177:3179,
1/1/3210:3211		Single bulged A
Not in a motif group		geometric
IL_5TBW_123
IL_37497.2
IL_7OHU_0571/1/3179:3188,
1/1/3204:3210		No text annotation
Not in a motif group		homologous
IL_5TBW_124
IL_15174.1
IL_7OHU_0581/1/3193:3194,
1/1/3197:3199		Single bulged U
Not in a motif group		geometric
IL_5TBW_125
IL_83039.13

Problematic loops

#loop idProblemSequence
IL_7OHU_001No text annotation
IL_7OHU_002No text annotation
IL_7OHU_003No text annotation
IL_7OHU_004No text annotation
IL_7OHU_005No text annotation
IL_7OHU_006No text annotation
IL_7OHU_007No text annotation
IL_7OHU_008Major groove platform
IL_7OHU_009No text annotation
IL_7OHU_010Isolated cWH basepair
IL_7OHU_014No text annotation
IL_7OHU_015No text annotation
IL_7OHU_019Tandem non-canonical cWW pairs
IL_7OHU_021No text annotation
IL_7OHU_022Single bulged A
IL_7OHU_023No text annotation
IL_7OHU_024No text annotation
IL_7OHU_025No text annotation
IL_7OHU_028No text annotation
IL_7OHU_034No text annotation
IL_7OHU_035No text annotation
IL_7OHU_036Single bulged U
IL_7OHU_037Kink-turn
IL_7OHU_038No text annotation
IL_7OHU_039No text annotation
IL_7OHU_042Kink-turn
IL_7OHU_043Single bulged A
IL_7OHU_044No text annotation
IL_7OHU_045Tandem non-canonical cWW pairs
IL_7OHU_046tSH-tHW-tHS-cWW
IL_7OHU_047No text annotation
IL_7OHU_048No text annotation
IL_7OHU_049No text annotation
IL_7OHU_0508x7 Sarcin-Ricin; G-bulge
IL_7OHU_051No text annotation
IL_7OHU_052No text annotation
IL_7OHU_053UAA/GAN
IL_7OHU_055No text annotation
IL_7OHU_059No text annotation
IL_7OHU_060No text annotation
IL_7OHU_061Tandem non-canonical cWW pairs
IL_7OHU_062Tandem non-canonical cWW pairs
IL_7OHU_063No text annotation
IL_7OHU_064No text annotation
IL_7OHU_065No text annotation
IL_7OHU_066No text annotation
IL_7OHU_067No text annotation
IL_7OHU_068Isolated non-canonical cWW with bulges
IL_7OHU_069Single bulged U
IL_7OHU_070No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7OHU_0041/1/502:503,
1/1/588:597,
1/1/606:611		No text annotation
Not in a motif group		homologous
J3_5TBW_003
NA

Problematic loops

#loop idProblemSequence
J3_7OHU_001No text annotation
J3_7OHU_002No text annotation
J3_7OHU_003No text annotation
J3_7OHU_005No text annotation
J3_7OHU_006No text annotation
J3_7OHU_007No text annotation

Coloring options:
Copyright 2024 BGSU RNA group. Page generated in 0.2474 s