RNA 3D Hub

JAR3D Query RF00210-3.98 completed
Run on Motif Atlas Version 3.98 using the Rfam secondary structure. Run with the CaCoFold secondary structure.

RF00210 Aphthovirus internal ribosome entry site (IRES)

Input Summary

      00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333344444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444445555555555555555555555555555555555555555555555555555555555555555555555
00000000011111111112222222222333333333344444444445555555555666666666677777777778888888888999999999900000000001111111111222222222233333333334444444444555555555566666666667777777777888888888899999999990000000000111111111122222222223333333333444444444455555555556666666666777777777788888888889999999999000000000011111111112222222222333333333344444444445555555555666666666677777777778888888888999999999900000000001111111111222222222233333333334444444444555555555566666666667777777777888888888899999999990000000000111111111122222222223333333333444444444455555555556666666666
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.....((...))..................((((((........((((.(((((.....).))))..........)))).......)).)))).....................................................................((....))..(((((((.(((((((((.......(((((....))))).)))))))(((.....)))..((((.....)))))))))))))((((............)))).........................................................................................................................(((((..........((((((((((...(((((..............).)))).)))).))..)))).(.(((.((((................)).))))))................)))))...(((((.((((....))))))))).........................
>L02971.1/237-705
ACCUGUAUUAUGUACAGGGU-GGCAGAUG-GCGUGC-CAUAAAUCUAUUAGUGGGAUACCACGCUUGUGGACCUUAUGCCCACACAGCCAUCCUCUAGUAAGUUUGUAAA----AUGUCUGGUGAGA--UGUGGGAACUUAUUGGAAACAA----CAAUUUGCU-UAAUAGCAUCCUAG-UGCCAGCGGAACAAC-AUCUGGUAACAGAUGCCUCUGGGGCCAAAAGCCAAGGUUUGACAGACCCAUUAGGAUUGGU----UUCAAA--ACCUGAAUUG----UUGUGGAAGAUAUU-CAGUAC--CUAUCAA----------------------UCUGGUAG-----------------------UGGUGCAAACACUAGU-------UGUAAGGCCCACGAAGGAUGCCCAGAAGGUACCCGCAGGUAACAAG-AGACAC-UGUGGAUCU-GAUCUGGGGC-CAA-CUAC---CUCUAUCAG----GUGAGUUAGUUAAAAAACGUCUAGUGGGCCAAACCCAGGGG---GG-AUCCCUGGUUUC-CUUU-UAU-UGUUAAUAUUGA
>AF055846.1/245-695
UGGCA-----GAUGGCGUGC-CAUAACUC-UACUAG-UGGGAUACCACGCUUGUGGACCU-UAUGCCCACA-----CAGCCAUCCUCU-AGUAAGUUUG---UAAGACGU----CUGAUGACGUGUG--GGAAAACA----CUAGAAAUAUUAAC----UUGCUGUAAAGCAUCCUACU-G-CCAGCGGAAUCAC-AUCUGGUAACAGAUGCCUCUGGGGCCAAAAGCCAAGGUUUAGC-AGACCCUUUAGGAUUGG---UUCAAUA--CCUGAG-----UUAAUAUGGAAAG--UGCUUAGUA---CCUGCU----------------------GACUUGGU-----------------------A-GUAGU-G-CAAACACUAGUUGUAUGGCCCGC--GAAGGAUGCCCAGAAGGUACCCGUAGGUAACAAG-UGACAC-UAUGGAUCU-GAUCUGGGGC-UGG-AUAC---CUCUAUCUUG---GUGAUCCAGUUAAAAAACGUCUA--GCGGGCCAAGCCCAGGGGGGA-UCCCUGGUUUCC-CUAU-UUU-UAUUAUUAUCAC
>AY593795.1/630-1091
ACGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAGCUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUG----UUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUAGU-GGCCGUGGGAAUCCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCUAAC-GGACCCACUAUGUGUGC---AACCCCA--GCACGGCAACUUUUCUGCGAAACC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCG-AACACU-------GGUGACAGGC--UAAGGAUGCCCUCCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGGAGGGGA-CUG-GGGC---UUCUAUAAAA---GUGCCCAGUUUAAAAAGCUUCUAC-GCCUGAGUAGGCGACCGGAGG-CCGGCGCCUUUC-UUUU-AAU-UACCACUGUUUU
>AY686687.1/621-1083
AAGCAAGUUUCCACAACUGA-GAAAACUC-GUGCAA-CUUGGAACCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GCACGGUGCU---CGACUCCA----CGCCCGGUCCACU--GGCGGGUG----UUAGUAGCAGCACUGUUGUUUCG-UAGCGGAGCAUGGU-GGCCGUGGGAACUCCCCCUUGGAGACAAGGACCCGCGGGGCCAAAAGCCACGUCCGGAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGCGAACGC--CA-CCUUAA---GGUGAC----------------------ACUGGUAC-----------------------UGGUACUCG-GUCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-GGACAC-UCGGGAUCU-GAGAAGGGGAUUUG-GGAC---UUCUCUAAAA---GUGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUC-UACU-ACC-CACUACUAAAUC
>AF026168.2/206-666
AAGCAGGUUUCCACAACUGA-UAAAACUC-GUGCAA-CUUGAAACCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGCU---CGACUCCA----CGCCCGGUCCACU--GGCGGGUG----UUAGUAGCAGCACUGUUGUUUCG-UAGCGGAGCAUGGU-GGCCGUGGGAACUCCUCCUUGGUGACAAGGGCCCACGGGGCCGAAAGCCACGUCCAAAC-GGACCCAACAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGCGAACAC--CA-CCUUAA---GGUGAC----------------------ACUGGUAC-----------------------UGGUACUCG-GUCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-GGACAC-UCGGGAUCU-GAGAAGGGGA-UUG-GGAC---UUCUUUAAA----GUGCCCAGUUUAAAAAGCUUCUAC-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUC-CAUU-ACC-CACUACUAAAUC
>AY317098.1/580-1041
AAGCAGGUUUCCACAACUGA-UAAAACUC-GUGCAU-UUUGAAACCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGCU---CGACUCCA----CGCUCGGUCCACU--GGCGGGUG----UUAGUAGCAGCACUGUUGCUUCG-UAGCGGAGCAUGGU-GGCCGUGGGAACUCCUCCUUGGUGACAAGGACCCACGGGGCCAAAAGCCACGUCCAGAU-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACCUUACUGCGAACAC--CA-CCUUAA---CGUGAC----------------------ACUGAUAC-----------------------UGGUACUCG-GUCACU-------GGUGACAGAC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-GGACAC-UCGGGAUCU-GAGAAGGGGA-UUG-GGAC---UUCUUUAAAA---GUGUCCAAUUUAAAAAGCUUCUAU-GUCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUC-CAUU-ACC-UACUACUAAAUC
>AY390432.1/620-1077
AUGCAGGUUUCCACAACUGA-CACAAAUC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAUUUU-GUACUGUGCU---CGACUCCA----CGCUCGGUCCACU--AGCGGGUG----UUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGGU-GGCCGCGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCUAAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGCGAAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCG-ACCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAUG-UGACAC-UCGGGAUCU-GA--GGGGGA-CUG-GGAC---UUCUUUAAAA---GUGCCCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUC---AU-GAA-CACAACUGAUUG
>AY593791.1/697-1157
AAGCAGGUCUCCACAACUGA-CACAAACC-GUGCAA-CUUGGAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--AGCGGGUG----UGAGUAGCAGAACUGUCGCUUCG-UAGCGGAGCAUGGU-GGCCGCGGGAACCCCUCCUUGGUAACAAGGACCCGCGGGGCCGAAAGCCACGUCUUA-U-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAAUUUUUCUGUGAAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AUCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGAC---UUCUUUAAAA---GUGCCUAGUUUAAAAAGCUUCUAC-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUC-UUUC-AAA-CACUACUAGACU
>AY687333.1/618-1079
AUGCAGGUUUCCACAACUGA-CACACACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACACUUU-GUACUGUGAU---UGACUCCA----CGCUCGGUCCACU--GGCGGGUG----CGAGUAACAGGACUGUUGUUUCG-UAGCGGAGCAUGAU-GGCCGUGGGAUCCCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUAAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGUGAAAAA--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-ACCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-UUG-GGGC---UUCUUUAAAA---GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUC-UUUU-AAC-CACUACUCAACU
>AY312589.1/250-712
AUUCAGGUCCCCACAACCGA-CACAAAUC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAUUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUG----CUAGUAACAGCACUGCUGCUUCG-UAGCGGAGCAUGGU-GGCCGCGGGAAUUCCUCCUUGGUAACAGGGACCCGCGGGGCCGAAAGCCACGUCCUCAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGUGAAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AUCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCUGAGGUAACACG-CGACAC-UCGGGAUCUUGAGAAGGGGA-CUG-GGGC---UUCUUUAAAA---GCGCCUAGUUUAAAAAGCUUCUAC-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-UUUU-AAA-CAACUAUUUUUA
>AY593831.1/632-1091
ACUCAGGUUCCCACAACCGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGGCAUUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUG----CUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGGU-GGCCGCGGGAACUCCUCCUUGGUAACAGGGACCCGCGGGGCCAAAAGCCACGUCCUCAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGUGAAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-ACCACU-------GGUGACAGGC--UAAGGAUGCCCUUUAGGUACCCUGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUUUAAAA---GCGCUUAGUUUAAAAAGCUUCUAC-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC---UU-UUA-AACAACUACUUU
>AY312587.1/249-708
AUUCAGGUUCCCACAACCGA-CACAAACC-GUGCAA-CCUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAUUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUG----CUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGGU-GGCCGCGGGAACUCCUCCUUGGUAACAGGGACCCGCGGGGCCGAAAGCCACGUCCUCAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGUGGAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-ACCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCUGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUUUAAAA---GCGCCUAGUUUAAAAAGCUUCUAC-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC---UU-UUA-AACAACUACUUU
>AF377945.1/251-710
AUUCAGGUUCCCACAACCGA-CACAAACC-GUACAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAUUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUG----CUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGGU-GGCCGCGGGAACUCCUCCUUGGUAACAGGGACCCGCGGGGCCGAAAGCCACGUCCUUAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAGCUUUACUGUGAAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-ACCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCUGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUUUAAAA---GCGCCUAGUUUAAAAAGCUUCUAC-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC---UU-UUA-AACAACUACUUU
>Y17974.1/205-665
AUGCAGGUUUCCACGACUGA-CACAAACC-GUGCAA-CUUGAAGCUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAUUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--UGCGGGUG----UUAGUAACAGCACUGAUGCUUCG-UAGCGGAGCAUGGU-GGCCGCGGGAACUCCUCCUUGGUAACGAGGACCCGCGGGGCCGAAAGCCACGUCCUUAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGUGAAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-ACCACU-------GGCGACAGGC--UCCGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUUUAAAA---GUGCCCAGUUUAAAAAGCUUCUAC-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-C-UU-UUG-AACUACUACUUC
>AY593799.1/634-1096
ACGCAGGUCUCCACAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--AGCGAGUG----UUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGGU-GGCCGUGGGAACCCCUCCUUGGCGACAAGGACCCACGGGGCCGAAAGCCACGUCCUUGU-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAGCUCUACUGUGAAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-GACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-AGAC---UUCUUUAAAA---GUGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUCUCCUU-AAC-UACCACUUCUUA
>AY593766.1/632-1093
ACGCAGGUCUCCACAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--AGCGAGUG----UUAGUAGUUGUAUUGUUGCUUCG-UAGCGGAGCAUGGU-GGCCGUGGGAACCCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUGAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACCUUACGGCGAAAAC--CA-CUUUAA---AGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAUG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGAC---UUCUUUAAAA---GUGCCCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUU-CACU-AAC-UGCCACUAUUUU
>AY593811.1/633-1094
ACGCAGGUCUCCACAACUGA-CACAAACC-GUGCAA-UUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAUUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUG----CUAGUAGUAGCACUGUUGCUUCG-UAGCGGAGCAUGGU-GGCCGUGGGAACCCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUUAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGCGAAAAC--CA-CUUCAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-ACCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-UUG-GGAC---UUCUUUAAAA---GUGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUU-CACA-AAC-UACUACUGUUUU
>AY687334.1/618-1079
ACGUAGGUUUCCACAACUGA-CACAAACC-GUGCAA-UUUGAAGCUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--AGCGAGUG----UUAGUAGCAACACUGUUGUUUCG-UAGCGGAGCAUGAU-GGCCGUGGGAACUCCCCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUAAC-GGACCCAUCAUGUGUGC---AACCCCG--GCACGGCAACUUUGUUGUGAAAGC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACCCA-ACCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACACCCAAGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGAC---UUCUGUAAAA---GUGCCCAGUUUAAAAAGCUUCUAU-GCCUGGAUAGGCGACCGGAGG-CCGGCGCCUUUC-CUUU-ACC-UAUUACUGUUUU
>AY593772.1/588-1049
ACGCAGGUUCCCGCAACUGA-CACGAACC-GUGCGA-CUUGAAGCUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACAUUUU-GUACUGUGUU---UGACUCCA----CGCUUGGUCCACU--AGCGAGUG----UUAGUAACAGCACUGUUGCUUCG-UCGCGGAGCAUGAU-GGCUGUGGGAACUCCCCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUCAC-GGACCCAUCAUGUGUGC---AACCCCA--GCACAGCAACUUUACUGUGAAAGC--CA-CUUUAA---GGUGUC----------------------ACUGAUAC-----------------------UGGUACUCA-ACCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAUG-CGACAC-UCGGGAUCU-GAGAAGGGGG-CUG-AGGC---UUCUUUAAAA---GUGCUCAGCUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUC-CACU-UAC-CAAUACUGUUUU
>AY593765.1/631-1092
ACGCAGGUUCCCACAACUGA-CACGAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACACUUU-GUACUGUGUU---UGACUCCA----CGCUUGGUCCACU--AGCGAGUG----UUAGUAACAGCACUGUUGCUUCG-UCGCGGAGCAUGAU-GGCUGUGGGAACUCCCCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUCAC-GGACCCAUCAUGUGUGC---AACCCCA--GCACAGCAACUUUACUGCGAAAGC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-ACCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAUG-CGACAC-UCGGGAUCU-GAGAAGGGGG-CUG-AGGC---UUCUUUAAAA---GCGCUCAGCUUAAAAAGCUUCUAU-GCCUGAACAGGCGACCGGAGG-CCGGCGCCUUUC-CACU-UAC-CAAUACUGUUUU
>AY593763.1/633-1094
ACGCAGGUUUCCACAACUGA-CACGAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACACUUU-GUACUGUGCU---UGACUCCA----CGCUUGGUCCACU--AGCGAGUG----UUAGUAGCAGCACUGUUGCUUCG-UCGCGGAGCAUGAU-GGCUGUGGGAACUCCCCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCUCAC-GGACCCAUCAUGUGUGC---AACCCCA--GCACAGCAACUUUACUGCGAAAGC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-ACCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAUG-UGACAC-UCGGGAUCU-GAGAAGGGGG-CUG-AGGC---UUCUUUAAAA---GCGCUCAGCUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUC-CACU-UAC-CAACACUGUUUU
>AY593834.1/631-1092
AUGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUCGGAACUCCACCUGGUCUUUC-CAGGUCUAGA----GGGGUGACGUUUU-GUACUGUGCU---UGACUCCA----CGCUUGGCCCACU--AGCGAGUG----UUAGUAGUAGCACUGUUGCUUCG-UAACGGAGCGUGAU-GGCCGUGGGAACUCCCCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUAAC-GGACCCAUCAUGUGUGC---AACCCCA--GCACGGCAACUUUGCUGCGAAAAC--CA-CUUUAA---GGUGAC----------------------GCUGACAC-----------------------UGGUACUCA-AUCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGAC---UUCUUUAAAA---GUGUCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUC-CCUA-AUU-ACUGCCAUUUUU
>AY593823.1/635-1097
AUGCAGGUUUCCACAACUGA-CACAAACC-GUGCAA-CUUGAAACCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGCGACAUUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--AGCGAGUG----UUAGUAGUAGCACUGUUGCUUCG-UAGCGGAGCAUGAU-GGCCGUGGGAGCUCCCCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCUACC-GGACCCAUCAUGUGUGC---AAACCCA--GCACGGCAACUUUACUGCGAAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AUCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUUUAAAA---GUGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUU-CACUGUUU-UACUACUGUUUU
>AY359854.1/546-1007
AUGCAGGUUUCCACAACUGA-CACAAACC-GUGCAA-UCUGGAACUUCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAUUUU-GUACUGUGAU---UGACUCCA----CGCUCGGUCCACU--AGCGAGUG----UUAGUAGUAGCACUGUUGCUUCG-UAGCGGAGCAUGGU-GGCCGUGGGAACCCCACCCUGGUAACAGGGACCCACGGGGCCGAAAGCCACGUCCUAAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGCGAAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-ACCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCUCGAGGUAACACG-CGACAC-UCGAGAUCU-GAGAAGGUGA-CUG-GGGC---UUCUUUAAAA---GCCCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUC-CAUU-UAC-UACUACUGUUUU
>AY593797.1/631-1092
AUGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGUCAUACU-GUACUGUGCU---UGACUCCA----CACUCGGUCCACU--AGCGAGUG----UUAGUAGUAGCACUGUUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACCCCUCCUUGGUAACAAGGACCCGCGGGGCCGAAAGCCACGUCCUGGC-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUAUGAAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGAAAC-UCGGGAUCU-GAGAAGGGGA-CCG-GGAC---UUCUAUAAAA---GUGCCCAGUUUAAAAAACUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUC-CUUU-AAU-UACCACUGUUUA
>AY593796.1/634-1095
AUGCAGGUUUCCCCAACUGA-CACAAAAC-GUGCAA-CUUGAAACCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAUCUU-GUACUGUGUU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUG----UCAGUAAUAGCACUGUUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACCCCUCCUUGGUAACAAGGACCCGCGGGGCCGAAAGCCACGUCCUAGC-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUAUGAAAAC--CA-CUUCAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGAAAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGAC---UUCUAUAAAA---GUGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUC-CUUU-AAC-UACUACUUUUAC
>AY593828.1/589-1050
AUGCAGGUAUCCCCAACUGA-CACAAACC-GUGCAA-CUUGGAGCCCCGCCUGGUCUUUC-CAGGUCUAGU----GGGGCGACACUUU-GUACUGUGUU---UGACUCCA----CGCUCGGUCCACU--AGCGAGUG----UUAGUAGUAGUGUUGUUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACCCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUGUC-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGCAGCUUCAUUAUGAAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUAUAAAA---GCACCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUU-CACU-AAU-UACCACUAUUUU
>AY304994.1/590-1051
AUGCAGGUAGCCCCAACUGA-CACAAACC-GUGCAA-CUUGGAACCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACCUU-GUACUGUGUU---UGACUCCA----CGCUCGGUCCACU--AGCGAGUG----UUAGUAGUAGUACUGUUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAAUCCCUCCUUGGCAACAAGGACCCACGGGGCCGAAAGCCACGUCCUGAA-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGCAGCUUUAUUAUGAAACC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUAUAAAA---GUGCCCAGUUUAAAAAGCUUCUAU-GCCUGGAUAGGCGACCGGAGG-CCGGCGCCUUUC-CUUU-GAC-CACUACUGUUUA
>AY593755.1/626-1086
AUGCAGGUUUCCCCAACUGA-CAUAAACC-GUGCAA-CUUGAAGCUCCACCUGGUCUUUC-CAGGUCUAGA----GGAGUGACAUUUU-GUACUGUGUU---UGACUCCA----CGCUCGGUCCACU--GGCGGGUG----UUAGUAGUAGCACUGUUGUCUCG-UAGCGGAGCAUGAU-GGCCGUGGGAACCCCUCCUUGGUAACAAGGACCCGCGGGGCCGAAAGCCACGUCCGAAC-GGACCCAUCAUGUGUGC---AACCCCA--GCACGACAACUUUACUGCGGAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-UACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---CUCUUUAAG----GCGCCUGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CUUU-AAC-CAAAACUGUUUU
>AY593825.1/591-1050
ACGCAGGUCUCC-CAACUGA-CACAAACC-GUGCAG-UUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAAUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUA----UCAGUAACAGCACUGAUGCUUCG-UAGCGGAGCAUGGC-GGCCGUGGGAACCCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUAAC-GGACCCGUCAUGUGUGC---AACCCCG--GCACGGCAGCUUUUCUGUGAAACU--CA-CUUUAA---CGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AACACU-------GGAGACAGGC--UAAGGAUGUCCUUCAGGUACCCCGGGGUAACACG-CGACAC-CCGAGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUAUAAAA---GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-C-UU-UAC-AACCACUGAUUU
>M10975.1/159-619
AAGCAGGCCUCCCCAACUGA-CACAAACC-GUGCAA-UUUGGAACUCCGCCUGGUCUUUC-CUGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGGCUCCA----CGCUCGGUCCACU--GGCGAGUG----UUAGUAACAGCACCGUUGCUUCG-UAGCGGAGCAUGAU-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCAAUC-GGACCCAUCAUGUGUGC---AACCCCA--GCACAGCAACUUUUCUGCGAAACU--CA-CUUCAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGUCAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUAUAAAA---GCGUCCAGGUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-C-UU-UAC-AGCCACUGACUU
>AY593810.1/557-1017
AAGCAGGUUCCCCCAACUGA-CACAAACC-GUGCAA-UUUGGAACCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGGCUCCA----CGCUCGGUCCACU--GGCGAGUG----UUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGAU-GGCUGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCAACU-GGACCUAUCAUGUGUGC---AACCCCA--GCACAGCAACUUUUCUGUGAAACU--CA-CUUCAA---GGUGGC----------------------ACUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGCCAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUAUAAAA---GCGUCCAGUUUAAAAAGCUUCUAU-GCCUGGAUAGGUGACCGGAGG-CCGGCACCUUUU-C-UU-UAU-AACCACUGACUU
>AY593789.1/558-1018
AAGCAGGUCCCCCCAACUGA-CACAAAUC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUG----UUAGUAACGGCACUGUUGCUUCG-UAGCGGAGCAUGAC-GGCCGCGGGAAUUCCUCCUUGGUAACAAGGACCCGCGGGGCCAAAAGCCACGUCCCAAC-GGACCCGUCAUGUGUGC---AACCCCA--GCACAGCAACUUUUCUGUGAAACC--CA-CUUCAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AACACU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGCAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGG---UUCUAUAAAA---CCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-C-UU-UAU-UACCACUGAAUU
>AY593829.1/633-1093
AAACAGGUUUCCCCAACUGA-CAUACACC-GUGCAA-UUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACACUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUG----UUAGUAACAGCACUGGUGCUUCG-UAGCGGAGCAUGGU-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUGAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACUUUUCUGUGAAACU--CA-CUCUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUAUUCA-AGUACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUGUAAAA---GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGGAUAGGUGACCGGAGG-CCGGCGCCUUUC-C-AU-UAU-AACUACUGACUU
>AY593793.1/633-1094
AAGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACGUU-GUACUGUGCC---UGACUCCA----CGCUCGGUCCACU--AGCGGGUG----UUAGUAACAGCACUGUUGUUUCG-UAGCGGAGCAUGAU-GGCCGCGGGAACUCCGCCUUGGUGACAAGGACCCGCGGGGCCGAAAGCCACGUCCUAAC-GGACCCAUCAUGUGUGC---AACCCCA--GCACAACAACUUUUCUGUGAAACC--CA-CCUUAA---GGUGAC----------------------ACUGACAC-----------------------UGGUACUCA-GACACU-------GGUGACAGGA--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-UGACAC-UCGGGAUCU-GAGAAGGGGA-CUA-GGGC---UUCUGUAAAA---GUGCCUAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CUUU-UAC-AACCACUGAUCA
>AY593809.1/632-1093
AAGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--AGCGGGUG----UUAGUAACAGCACUGUUGUUUCG-UAGCGGAGCAUGAU-GGCCGUGGGAACUCCGCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUAAC-GGACCCAUCAUGUGUGC---AACCCCA--GCACAACAACUUUUCUGUGAAACC--UA-CCUUAA---GGUGAC----------------------GCUGAUAC-----------------------UGGUACUCA-GACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUA-GGGC---UUCUGUAAAA---GUGCCUAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CCUU-UAC-AACUACUGACUA
>AY593770.1/545-1005
AAGCAGGUUUCCACAACUGA-CAUAAACC-GUGCAA-UUUGAAGCUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGGCUCCA----CGCUCGAUCCACU--GGCGAGUG----UUAGUAACACCACUGCUACUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAAACCCCCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCUAAC-UGACCCGUCAUGUGUGC---AACCCCA--GCACGGUAGCUUUGCUGUGAAACU--CA-CUUUAA---GGUGAC----------------------AUUGAUAC-----------------------UGGUACCCA-GACACU-------GGUGACAGGC--UAAGGAUGCCCUCCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGGAGGGGA-CUA-GGGC---CUCUAUAAAG---GCGCCUGGUUUAAAAAACUUCUAC-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-C-CC-UAU-AAUCACUGACCA
>AY593767.1/631-1092
AAACAGGCUCCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGGCUCCG----CGUUCGAUCCACC--GGCGAGUG----UUAGUAACACCACUGCUACUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACCCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCACAU-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGUAGCUUUGCUGUGAAACU--CA-CUUUAA---AGUGAC----------------------AUUGAUAC-----------------------CGGUACCCA-AAUACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAUG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUGUAAAA---GCGCUCAGUUUAAAAAGCUUCUAU-GUCUGGAUAGGUGACCGGAGG-CCGGCACCUUUU-CUUU-UAC-UAUUUGACUCUA
>AY593771.1/631-1092
AAGCAGGUUUCUCCAACUGA-CACAAACC-GUGCAA-UUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGGCUCCA----CGUUUGACCCACU--GGCGAGUG----UCAGUAACAACACUGCUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAGCUCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCACAC-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGUAGCUUUGCUGUGAAACU--CA-CUUUAA---AGUGAC----------------------GUUGAUAC-----------------------UGGUACCCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGGGGUAACACG-CGACAC-CCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUGUAAAA---GCGCCCAGUUUAAAAAACUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-AAC-UAUUUUGACUUU
>AY593778.1/631-1092
AAGCAGGUUUCUCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGGCUCCA----CGUUCGAUCCACU--GGCGAGUG----UUAGUAACACCACUGCUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCGAAU-GGACCCGCCAUGUGUGC---AACCCCA--GCACGGUAGCUUUGUUGUGAAACC--CA-CUUUAA---AGUGAC----------------------AUUGAUAC-----------------------UGGUACCCA-AAUACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUGUAAAA---GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CUCU-AAC-UACUUUGACUCU
>AY593780.1/631-1092
AAGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGGCUCCA----CGUUCGAUCCACU--GGCGAGUG----UUAGUAACACCACUGCUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCGAAU-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGUAGCUUUGUUGUGAAACU--CA-CUUUAA---AGUGAC----------------------AUUGAUAC-----------------------UGGUACCCA-AAUACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGCAACAUG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUGUAAAA---GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CUCU-AAC-UACUUUGACUCU
>AY593792.1/631-1092
AAGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCAUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGGCUCCA----CGUUCGAUCCACU--GGCGAGUG----UUAGUAACACCACUGCUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCGGAU-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGUAGCUUUGUUGUGAAACU--CA-CUUUAA---AGUGAC----------------------AUUGAUAC-----------------------UGGUACCCA-AAUACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAUG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUGUAAAA---GCGCCCAGUUUAAAAAACUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CUUU-AAC-UACUUUGACACU
>AY593760.1/588-1049
AAGCAGACUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGGCUCCA----CGUUCGAUCCACU--GGCGAGUG----UUAGUAACACCACUGCUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCGAAU-GGACCCGUCAUGUGUGC---AACCCCG--GCACGGUAGCUUUGUUGUGAAACU--CA-CUUUAA---AGUGAC----------------------AUUGAUAC-----------------------UGGUACCCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGGAACAUG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUGUAAAA---GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CUCU-AAC-UACACUUACUCU
>AY593753.1/632-1093
AAGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACACUUU-GUACUGUGUU---UGGCUCCA----CGUUCGAUCCACU--GGCGAGUG----UUAGUAACAACACUGCUACUUCG-UAGCGGAGCAUGGC-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCACAU-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGUAGCUUUGUUGUGAAACC--CA-CUUUAA---AGUGAC----------------------ACUGAUAC-----------------------UGGUACCCA-AAUACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUAUAAAA---GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CUUU-AAU-UACACUGAAAUU
>AY593757.1/631-1092
AAGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGGCUCCA----CGUUCGAUCCACU--GGCGAGUG----UUAGUAACAACACUGCUACUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCACAU-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGUAGCUUUGUUGUGAAACC--CA-CUUUAA---AGUGAC----------------------AUUGAUAC-----------------------UGGUACCCA-AAUACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUAUAAAA---GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CUUU-AAU-CACAUUGAAAUU
>AY593794.1/627-1087
AUGCAGGUUUCCCCAACUGA-CACACACC-GUGCAA-AUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGGCUCCA----CGCUCGACCCACU--GGCGAGUG----UUAGUAACACCACUGCUACUUCG-UCGCGGAGCAUGAC-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCGGAC-GGACCCGUCAUGUGUGC---AACCCCA--GCACAGUAGCUUUGUUGUGAAACC--CA-CUUUAA---AGUGAC----------------------GUUGAUAC-----------------------UGGUACCCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUCCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGGAGGGGA-CUG-GGGC---UUCUUUAAA----GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CUCU-UAC-CUACUUUGACUG
>AJ251476.1/211-672
AAGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-UUUGAAACUCCGCCUGGGCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGACUCCA----CGCUCGAUCCACU--GGCGAGUG----UUAGUAACAACACUGCUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGACCCCCCCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCGAAU-GGACCCGUCAUGUGUGC---AAACCCA--GCACAGUACCUUUGUUGUGAAACU--CA-CUUUAA---AGUGAC----------------------AUUGAUAC-----------------------UGGUACUCA-AGCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-UGACAC-UCGGGAUCU-GAGAAGGGGA-CCG-GGGC---UUCUAUAAAA---GCGCCCGGUUUAAAAAGCUUCUAU-GUCUGAAUAGGUGACCGGAGG-CAGGCACCUUUC-UUUU-AAU-UACACUGGACUU
>AY593788.1/630-1091
ACGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAG-CUUGGCGCUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACAUGUU-GUACUGUGUU---UGGCUCCA----CGCUCGAUCCACC--GGCGAGUA----CUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGUC-GGCCGUGGGAACUCCCCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCGCAA-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGUGAAACA--CA-CUUUAA---GGUGAC----------------------AUUGAAAC-----------------------UGGUACCCA-AUCACU-------GGUGACAGGC--UAAGGAUGCCCUCCAGGUACCCCGAGGUAACAUG-AGACAC-UCGGGAUCU-GAGGAGGGGA-CUG-AGGC---UUCUAUAAAA---GCGCUCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CUUU-UAU-AACUAUGAACUA
>AY593803.1/632-1092
ACGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAG-CUUGACACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACAUGUU-GUACUGUGUU---UGGCUCCA----CGCUCGGUCCACC--GGCGAGUG----CUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACCCCCCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCACAC-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGUGAAACA--CA-CUUUAA---AGUGAC----------------------ACUGAAAC-----------------------UGGUACCCA-AUCACU-------GGUGACAGGC--UAAGGAUGCCCUCCAGGUACCCCGAGGUAACACG-AGACAC-UCGGGAUCU-GAGGAGGGGA-CUG-AGGC---UUCUAUAAAA---GCGCUCGGUUCAAAAAGCUUCUAC-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-C-UU-UAU-AAUUAUGAACUA
>AJ133359.1/577-1038
AAGCAGGUUUCUCCAACUGA-CACAAAAC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACACUUU-GUACUGCGUU---UGGCUCCA----CGCUCGAUCCACU--GGCGAGUG----UUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGCCCACAC-GGGCCCGUCAUGUGUGC---AACCCCA--GCACGGCGACUUUACUGCGAAACC--CA-CUUUAA---AGUGAC----------------------AUUGAAAC-----------------------UGGUACCCA-CACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUAUAAAA---GUGCUCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-UCGGCACCUUUC-CUUU-GUA-AUUAAUGACCCU
>AF274010.1/577-1038
AAGCAGGUUUCCCCAACUGA-CACAAAAC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACACUUU-GUACUGUGUU---UGGCUCCA----CGCUCGAUCCACU--GGCGAGUG----UUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGCCCACAC-GGGCCCGUCAUGUGUGC---AACCCCA--GCACGGCGACUUUACUGCGAAACC--CA-CUUUAA---AGUGAC----------------------AUUGAAAC-----------------------UGGUACCCA-CACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUAUAAAA---GCGCUCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-UCGGCACCUUUC-CUUU-ACA-AUUAAUGACCCU
>AY593808.1/632-1093
ACGCAGGUUUCCCCAACUGA-CACACACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGGCUCCA----CGCUCGAUCCACU--GGCGAGUG----UUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGCCCAAAC-GGGCCCGUCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGCGAAACC--CA-CUUUAA---AGUGAC----------------------AUUGAUAC-----------------------UGGUACCCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUAUAAAA---GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CUUU-ACA-AUUAAUGACCCU
>AY593802.1/629-1089
AUGCAGGUUUCCCCAACCGA-CACAAACC-GUGCAA-UCUGAAGUUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGAUGACACUUU-GUACUGCACU---UGGCUCCA----CGCUCGAUCCAUC--GGCGAGUG----UUAGUAACAGCACUAUUGCUUCG-UAGCGGAGCAUGAU-GGCCGUGGGACCUCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCAC-U-GGACCCAUCAUGUGUGC---AACCCCA--GCACAGCAACUUUACUGUGAAACU--CA-CUUUAA---GAUGAC----------------------AUUGAUAC-----------------------UGGUACCCA-CGUGCU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAUG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CCG-GGGU---UUCUGUAAAA---ACGCCCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UAU-ACUCACUGAUUU
>AJ007572.1/620-1080
AUGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAGCUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAUUUU-GUACUGUGCU---UGGCUCCA----CGCUCGAUCCAUC--GGCGGGUG----UUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGAA-GGCCGUGGGACCUCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCAC-U-GGACCCUUCAUGCGUGC---AUUCCCA--GCACGGCAACUUUACUGUGAAAUC--CA-CUUUAA---GAUGAC----------------------AUUGAUAC-----------------------UGGUACCCA-AGUGCU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-UGACAC-UCGGAAUCU-GAGAAGGGGA-CCG-GGGU---CUCUAUAAAA---UCGCCCGGUUUAAAAAGCUUCUAC-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UAU-ACCUACUGACUU
>AY593756.1/544-1004
AUGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAGCUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGCGACACUUU-GUACUGUGUU---UGGCUCCA----CGCUUGACUCAUC--GGCGAGUG----UUAGUAGCAGCACUGUUGCUUCG-UAGCGGAGCAUGAU-GGCCGUGGGAAUUCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCACAC-GGACCCAUCAUGUGUGC---AACCCCA--GCACAGCAACUUUACUGUGAAACU--CA-CUUUAA---GAUGAC----------------------GUUGAUAC-----------------------UGGUACCCA-AGCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUUUAAAA---GCGCCCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-C-UU-UAC-AACUAUUGACAU
>AY593782.1/628-1086
AUGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-UCUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGCA---UGACUCCA----CGUUCGAUCCACU--GGCGAGUG----CUAGUAGUAGUACUGCUGUUUCG-UAGCGGAACACGAC-GGCCGUGGGACUCCCCCCUUGGUAACAAGGACCCGCGGGGCCAAAAGCCACGUCU---C-UGACCCGUCGUGUGUGC---AAACCCA--GCACAGCAGCUUUACUGCGAAAAC--CA-CUUUAA---GGUGAC----------------------AUUGAUAC-----------------------UGGUACUCA-CGCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGCAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUGUAAAA---GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CCUC-UAC-UACCACUGACUC
>AY593806.1/631-1092
ACGCAGGUUUCCCCAACUGA-CACAACCC-GUGCAA-CUUGAAACUCCGCUUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGCU---UGGCUCCA----CGCUCGAUCCACU--GGCGAGUG----UUAGUAGCAGCACUGUUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAAUCCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCAAAC-GGACCCGCCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGCGAAAAC--CA-CUUUAA---GGUGAC----------------------AUUGACAC-----------------------UGGUACCCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUAUAAAA---GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-UCUU-UAC-ACCUACUGACUU
>AY593821.1/631-1092
AAGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGGCACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACCUU-GUACUGUGUU---UGACUCCA----CGCUCGAUCCACU--GGCGAGUG----UUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGGU-GGCCGUGGGGCUUCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUAAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGCGAAACC--UA-CUUUAA---GGUGAC----------------------AUUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CCG-GGGC---UUCUGUAAAA---GUGCUCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CUUU-UAC-AAACUUCAACUU
>D10143.1/253-713
AUGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACACUUU-GUACUGAGUU---UGACUCCA----CGCUCGAUCCACU--AGCGAGUG----UUAGUAGCGGUACUGCUGUCUCG-UAGCGGAGCAUGUU-GGCCGUGGGAACACCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUAAC-GGACCCAACAUGUGUGC---AACCCCA--GCACGGCAGCUUUACUGUGAAACC--CA-CUUCAA---GGUGAC----------------------AUUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGAC---UCCUUUAAA----GUGCCCAGUUUAAAAAGCUUCUAU-GCCGGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CUUU-UAU-AACCACUGAAUA
>AY593820.1/632-1092
AUGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACAUUUU-GUACUGCGUU---UGACUCCA----CGCUCGAUCCACU--AGCGAGUG----UUAGUAGCGGUACUGCUGUCUCG-UAGCGGAGCAUGUU-GGCCGUGGGAACACCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUAAC-GGACCCAACAUGUGUGC---AACCCCA--GCACGGCAGCUUUACUGUGAAACC--CA-CUUCAA---GGUGAC----------------------AUUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGAC---UUCUUUAAA----GUGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CUUU-UAU-AACCACUGAACA
>D10144.1/253-713
AUGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACAUUUU-GUACUGUGUU---UGACUCCA----CGCUCGAUCCACU--AGCGAGUG----UUAGUAGCGGUACUGCUGUCUCG-UAGCGGAGCAUGUU-GGCCGUGGGAACACCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCAUGUCCUAAC-GGACCCAAUAUGUGUGC---AACCCCA--GCACGGCAGCUUUACUGUGAAACC--CA-CUUCAA---GGUGAC----------------------AUUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGAC---UUCUUUAAA----GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CUUU-UAU-AACCACUGAAUA
>AY593817.1/632-1092
AUGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACAUUUU-GUACUGUGUU---UGACUCCA----CGCUCGAUCCACU--AGCGAGUG----UUAGUAGCGGUACUGCUGUCUCG-UAGCGGAGCAUGUU-GGCCGUGGGAACACCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCAUGUCCUAAC-GGACCCAACAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGUGAAACC--CA-CUUCAA---GGUGAC----------------------AUUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGAC---UUCUUUAAA----GUGCCCAGUUUAAAAAGCUUCUAU-GUCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CUUU-UAU-AACCACUGAGCA
>AY593814.1/628-1088
AUGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACAUUUU-GUACUGUGUU---UGGCUCCA----CGCUCGAUCCACU--AGCGAGUG----UUAGUAGCGGUACUGCUGUCUCG-UAGCGGAGCAUGUU-GGCCGUGGGAACACCUCCUUGGCAACAAGGACCCACGGGGCCGCAAGCCACGUCCUAAC-GGACCCAACAUGUGUGC---AACCCCA--GCACGGCAGCUUUACUGUGAAACC--CA-CUUCAA---GGUGAC----------------------AUUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGAC---UUCUUUAAA----GUGCCCAGUUUAAAAAGCUUCUAU-GUCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CUUU-UAC-AACCACUGAACA
>AY593773.1/632-1093
AUGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAUUUU-GUACCGUGCU---UGACUCCA----CGCUCGAUCCACU--GGCGAGUG----UUAGUAGCGGCACUGCUGUCUCG-UAGCGGAGCAUGUU-GGCCGUGGGAACACCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCUAAC-GGACCCAACAUGUGUGC---AACCCCA--GCACGGCAGUUUUACUGUGAAACC--CA-CUUCAA---GGUGAC----------------------AUUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGG-CUG-GGGC---UUCUAUAAAA---GCGCUCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CUCU-UAC-AAAUUUUAAACU
>AY593776.1/589-1047
ACGCAGGUUUCC-CAACUGA-CACUAACC-GUGCAA-CUUGAAAUCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAAUUU-GUACUGUGUU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUG----UUAGUAGCAGCACUGUUGUCUCG-UAGCGGAGCAUGAU-GGCCGUGGGAAUCCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCCAAU-GGACCCAUCAUGUGUGC---AACCCCA--GCACGGCAACCUUUCUGUGAAACU--CA-CUUCAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AAUACU-------GGUGGCAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-AGGC---UUCUUUAAAG---GCGCUCGGUUUAAAAAGCUUCUAU-GCCUGAACAGGUGACCGGAGG-UCGGCACCUUUC---UC-UAC-AACCACUGAUUU
>AY593759.1/590-1049
ACGCAGGUUCCCCCAACUGA-CACCAACC-GUGCAA-CUUGAAAUCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAAUUU-GUACUGUGUU---UGACUCCA----CGCUCGGUUCACU--GGCGAGUG----UUAGUAGCAGCACUGUUGUCUCG-UAGCGGAGCAUGAU-GGCCGUGGGAAUUCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCGCGUCCUAAC-GGACCCAUCAUGUGUGC---AGCCCCA--GCACGGCAACUUUUCUGGGAAACC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AAUACU-------GGUGGCAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CCG-AGGC---UUCUUUAAAA---GCGCUCGGUUUAAAAAGCUUCUAU-GCCUGAACAGGUGACCGGAGG-UCGGCACCUUUC---UC-UAC-AACCACUGAUUU
>AY593751.1/594-1053
ACGCAGGUUUCCCCAACUGA-CACUUACC-GUGCAA-CUUGAAAUCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAAUUU-GUACUGUGGU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUG----CUAGUAGCAGCACUGUUGUCUCG-UAGCGGAGCAUGAU-GGCCGUGGGAAUCCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCUAAC-GGACCCAUCAUGUGUGC---AACCCCA--GCACGGCGACUUUCCUGUGAAACC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGGCAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UUGGGAUCU-GAGAAGGGGA-CUG-AGGC---UUCUUUAAAA---GCGCUCGGUUUAAAAAGCUUCUAC-GCCUGAACAGGUGACCGGAGG-CCGGCACCUUUC---UC-UAC-AAUCACUGAUAC
>AY593774.1/596-1054
ACGCAGGUUUCC-CAACUGA-CACUAACC-GUGCAA-CUUGAAAUCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAAUUU-GUACUGUGUU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUG----CUAGUAGCAGCACUGUCGUCUCG-UAGCGGAGCAUGAU-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCUAAC-GGACCCAUCAUGUGUGC---AACCCCA--GCACGGCGACUUUUCUGUGAAACC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AAUACU-------GGCGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-AGGC---UUCUUUAAAA---GCGCUCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC---UC-UAC-AACCACCGAUUU
>AY593822.1/595-1054
ACGCAGGUUUCCCCAACUGA-CACUAACC-GUGCAA-CUUGAAAUCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAAUUU-GUACUGUGUU---UGACUCCA----CGCUCGGUCCACC--GGCGAUUG----CUAGUAACAGCACUGUCGUCUCG-UAGCGGAGCAUGAU-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCUAAC-GGACCCAUCAUGUGUGU---AACCCCA--ACACGGCGACUUUUCUGUGAAACC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AAUACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCAAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-AGGC---UUCUUUAAAA---GCGCUCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC---UU-UAC-AACCACUGAUUU
>AY593826.1/597-1056
ACGCAGGUUUCCCCAACUGA-CACUAACC-GUGCAA-CUUGAAAUCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAAUUU-GUACUGUGUU---UGACUCCA----CGCUCGGCCCACC--GGCGAGUG----UUAGUAGCAGCACUGUCGUCUCG-UAGCGGAGCAUGAU-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCUAAC-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGCGACUUUUCUGUGAAACC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AAUACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-AGGU---UUCUUUAAAA---GCGCUCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC---UU-UAC-AACCACUGAUAC
>AF511039.1/582-1038
ACGCAGGUUUCCUCAACUGA-CACAACUC-GUGCAA-ACUGUAACCCCGCCUGGUCUUUC-CAGGUCUGGA----GGGGA-AGCUUUU-GUACUGUGUU---UGGCUCCA----CGUUCGGUCUACU--GGCGAGCG----CUAGUAGUGGCAAUGUUGUUUCG-UAGCGGAGCAUGUU-GGCCGUGGGAAUCCCUCCUUGGCGACAAGGACCCACGGGGCCGCAAGCCACGUCU---U-UGACCCAACAUGUGUGC---AACCCCA--GCACGGCAACCUUGCCACGAAAAC--CA-CUUCAA---GGUAAC----------------------ACUGAUAC-----------------------UGGUACUCA-AAUACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-GGACAC-UUGGGAUCU-GAGAAGGGGA-UUG-GGAC---UUCUAUAAAA---GUGCCCAAUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-C-UC-UAC-AACUACUUUACC
>AY593813.1/543-1005
AAUCAGGUUUCCUCAACUGA-CACAAACC-GUGCAA-UCUGCAGCUCCGCCUGGUCUUUC-CAGGUCUAGA----GGAGUAACAUUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCUACU--GGCGGGUG----UUAGUAGCGGCACUGUUGCUUCG-UAGCGGAGCAUGUU-GGCCGUGGGAACUCCUCCUUGGCAACAAGGACCCACGGGGCCAAAAGCCACGUCCUCAU-GGACCCAACAUGUGUGC---AACCCCA--GCACGGCAACUUUUCCGCGAAAAC--CA-CUUUAA---GGUAAC----------------------ACUGAUAC-----------------------UGGUACUCA-AACGCU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-UGACAC-UUGGGAUCU-GAGAAGGGGA-CUA-GGGC---UUCUAUAAAA---GCGCCUGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CCUU-UUCGCACUACUAAACA
>AY593761.1/586-1045
ACGCAGGUC-CCUCAACUGG-UACAAACC-GUGCAA-CUUGAAACCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGCGCA---UGACUCCA----CGUUCGGCCUACU--GGCGGGUG----CUAGUAACGGUGUUGUUGUUUCG-UAGCGGAGCAUGUU-GGCCGUGGGAACCCCCCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCUUC-C-AGACCCAACAUGUGUGC---AACCCCA--GCACGGCAACUUCAUCGUGAACAC--CA-CCUUAA---GGCAAC----------------------GCUGAUAC-----------------------UGGUACUCA-GACGCU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCAAGGUAACAAG-AGACAC-UUGGGAUCU-GAGAAGGGGA-CCG-GGGC---UUCUGUAAAA---GCGCCCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CUUU-GUU-AACUCUUAACUU
>AY593842.1/589-1047
ACGCAGGAAUCUUAGACCAA-C-CCGCCC-GUGCAA-CUGCAAGUUUCGCCCGGUCUUUC-CGGGUCUUGA----GAGACAAACAGAU-GUACUGAGGC---CAACUCCA----CGAUUGGUCUACU--AGCGGGUA----CUAGUAACACUCACUUUGCUUCG-UAGCGGAGCACAUG-AGCGGCGGGAACACCCCCAUGGUAACAUGGACCCGUCGGGCCAAAAGCCACGCCUCA---CGGCCUCAUGUGUGUGC---AACCCCA--GCACGGCAACUUGUUUGUGAACCA--CA-CCUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-AGACAC-UCGGGAUCU-GAGAAGGGGA-CCA-GAAG---UUCUAUCAAA---CUGUCUGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UAC-UUAAACCCAAUU
>AY593851.1/589-1048
ACGCAGGAAUCUUAGACCAA-CCCUACCC-GUGCAA-CUGCAAGUUUCGCCCGGUCUUUC-CGGGUCUAGA----GAGACAAACAGAU-GUACUGAGGC---CAACUCCA----CGAUUGGUCUACU--AGCGGGUA----CUAGUAACACUCACUUUGCUUCG-UAGCGGAGCACAUG-AGCGGCGGGAUUUCCCCCAUGGUGACAUGGACCCGCCGGGCCAAAAGCCACGCCUCA---CGGCCUCAUGUGUGUGC---AACCCCA--GCACGGCAAUUUGUCUGUGAAACA--CA-CCUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUCCAGGUACCCCGAGGUAACACG-AGACAC-UCGGGAUCU-GAGAAGGGGA-CCA-GGAG---UUCUAUCAAA---CUGCCUGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UAC-UACACCUUAUUU
>AY593840.1/589-1048
ACGCAGGAAUCUUAGACCAA-CCCAACCC-GUGCAA-CUGCAAGUCUCGCCCGGUCUUUC-CGGGUCUUGA----GGGAUAAACAGAU-GUACUGAGAU---CAACUCCA----CGAUUGGUCUACU--AGCGGGUA----CUAGUAACACUCACUUUGCUUCG-UAGCGGAGCACAUG-AGCGGCGGGAUCUCCCCCAUGGUAACAUGGACCCGCCGGGCCAAAAGCCACGCCUCA---CGGCCUCAUGUGUGUGC---AACCCCA--GCACGGCAACUUGUUUGUGAAACA--CA-CCUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAUG-AGACAC-UCGGGAUCU-GAGAAGGGGA-CCA-GGAG---UUCUAUCAAA---CUGCCUGAUUCAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UUA-UUUUACUCAAUU
>AF540910.1/596-1056
ACGCAGGAAUCUUAGACCAA-CCCAACCC-GUGCAC-CUGCAAGUUUCGCCCGGUCCUUC-CGGGUCUUGA----GAGACAAACAGAU-GUACUGAGAU---CAACUCCA----CGAUUGGUCUACU--AGCGGGUA----CUAGUAACACUCACUUUGCUUCG-UAGCGGAGCACAUG-AGCGGUGGGACCUCCCCCAUGGUAACAUGGACCCACCGGGCCAAAAGCCACGCCUCA---CGGCCUCAUGUGUGUGC---AACCCCA--GCACGGCAACUUGUUUGUGAAACA--CA-CCUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-AUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-AGACACUUCGGGAUCU-GAGAAGGGGA-CCA-GGAG---UUCUAUCAAA---CUGCCCGGUUUAAAAAGCUUCUAU-GCCUGGAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UAU-UUAAACUCACUU
>AY593843.1/590-1049
ACGCAGGAAUCUCAGACCAA-CCCAACCC-GUGCAA-CUGCAAGUUUCACCCGGUCUUUC-CGGGUCUUGA----GAGACAAACAGAU-GUACUGAGAU---CAACUCCA----CGAUUGGUCUACU--AGCGGGUA----CUAGUAACACUCACUUUGCUUCG-UAGCGGAGCACAUG-AGCGGUGGGAGCUCCCCCAUGGUAACAUGGACCCACCGGGCCAAAAGCCACGCCUCACA---GCCUCAUGUGUGUGC---AACCCCA--GCACGGCAAUUUGUUUGUGAACCA--CA-CCUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-AGACAC-UCGGGAUCU-GAGAAGGGGA-CCA-GGAG---UUCUAUCAAA---CUGCCCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UAU-CUAAACUCAAUU
>AY593841.1/588-1047
ACGCAGGAAUCUUAGACCAA-CCCAACCC-GUGCAG-CUGCAAGUUUCGCCCGGUCUUUC-CGGGUCUAGA----GAGACAAACAGAU-GUACUGAGAU---CAACUCCA----CGAUUGGUCUACU--AGCGGGUA----CUAGUAACACUCACUUUGCUUCG-UAGCGGAGCACAUG-AGCGGUGGGAACUCCCCCAUGGUAACAUGGACCCACCGGGCCAAAAGCCACGCCUCA---CGGCCUCAUGUGUGUGC---AACCCCA--GCACGGCAAUUUGUUUGUGAAACA--CA-CCUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-AGACAC-UCGGGAUCU-GAGAAGGGGA-CCA-GGAG---UUCUAUAAAA---CUGCCUGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UAC-UCAAAUUUCAUU
>AY593845.1/585-1044
ACGCAGGAAUCUUAGACCAA-CCCAACCC-GUGCAA-CUGCAAGUUUCGCCCGGUCUUUC-CGGGUCUAGA----GAGACAAACAGAU-GUACUGAGAU---CAACUCCA----CGAUUGGUCUACU--AGCGGGUA----UUAGUAACACUCACUUUGCUUCG-UAGCGGAGCGCAUG-AGCGGCGGGAACUCCCCCAUGGUAACAUGGACCCGCCGGGCCAAAAGCCACGCCUCA---CGGCCUCAUGCGUGUGC---AACCCCA--GCACGGCAAUUUGUUUGUGAAACG--CA-CCUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-AGACAC-UCGGGAUCU-GAGAAGGGGA-UCG-GGAG---UUCUAUCAAA---CUGCCCGGUUUAAAAAGCUUCUAC-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UAU-UUUAAACCUAUU
>AY593853.1/545-1004
ACGCAGGAAUCUUAGACCAA-CCCAACCC-GUGCAA-CUGCAAGUUUCGCCCGGUCUUUC-CGGGUCUAGA----GAGACGAACAGAU-GUACUGAGAU---CAACGCCA----CGAUUGGUCUACU--GGCGGGUA----CUAGUAACACUCACUUUGCUUCG-UAGCGGAGCACAUG-AGCGGUGGGAACUCCCCCAUGGUAACAUGGACCCACCGGGCCAAAAGCCACGCCUCA---CGGCCUCAUGUGUGUGC---AACCCCA--GCACGGCAAUUUGUUUGUGAAACA--CA-CCUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-AGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGAG---UUCUAUCAAA---CUGCCCGGUUUAAAAACCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-GUU-UAAACUCAAUUU
>AY593838.1/588-1047
ACGCAGGAAUCCUAGACCAA-CCCAACCC-GUGCAA-CUGCAAGUUUCGCCCGGUCUUUC-CGGGUCUAGA----GAGACGAACAGAU-GUACUGAGAU---CAACUCCA----CGAUUGGUCUACU--AGCGGGUG----UUAGUAACACUCACUUUGCUUCG-UAGCGGAGCGCAUG-AGCGGCGGGAACUCCCCCAUGGUAACAUGGACCCUCCGGGCCAAAAGCCACGCCUCA---CGGCCUCAUGCGUGUGC---AACCCCA--GCACGGCAAUUUGUUUGUGAAACA--CA-CCUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-AGACAC-UCGGGAUCU-GAGAAGGGGA-CCG-GGAG---UUCUAUCAAA---CUGCCCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUA-UUU-AAACCUUGAUUU
>AY593848.1/546-1005
ACGCAGGAAUCUUAGACCAA-CCCAACCC-GUGCAA-CUGCAAGUUUCGCCCGGUCUUUC-CGGGUCUUGA----GAGACAAACAGAU-GUACUGAGAC---CGACUCCA----CGAUUGGUCUACU--GGCGGAUG----CUAGUAACACUCACUUUGCUUCG-UAGCGGAGCGCAUG-AGCGGUGGGAACACCCCCAUGGUAACAUGGACCCACCGGGCCAAAAGCCACGCCUCA---CGGCCUCAUGUGUGUGC---AACCCCA--GCACGGCAACUUGUUUGUGAAACA--CA-UCUUAA---AGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-AGACAC-UCGGGAUCU-GAGAAGGGGA-CCA-GGAG---UUCUAUAAAG---CUGCCUGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUCUU-CCUU-UAC-UUGACUUAUUUU
>AY593850.1/588-1048
ACGCAGGAAUCUUAGACCAA-CCCAAACCCGUGCAA-CUGCAAGUUUCGCCCGGUCUUUC-CGGGUCUAGA----GAGACAAACAGAU-GUACUGAGAC---UGACUCCA----CGACUGGUCUACU--GGCGGGUG----CUAGUAACACUCACUUUGCUUCG-UAGCGGAGCACAUG-AGCGGUGGGAACACCCCCGUGGUAACACGGACCCACCGGGCCAAAAGCCACGCCUCA---CGGCCUCAUGUGUGUGC---AACCCCA--GCACGGCAAAUUGUUUGUGAAACA--CA-UCUUAA---GGUAAC----------------------ACUGGGAC-----------------------UGGUACUUA-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-AGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GAAG---UUCUUUAAAA---CUGUCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UUA-UCCAACACAUUU
>AY593846.1/546-1006
ACGCAGGAAUCUUAGACCAA-CCCAAACCCGUGCAA-CUGCAAGUUUCGCCCGGUCUUUC-CGGGUCUAGA----GAGACAAACAGGU-GUACUGAGAC---UGACUCCA----CGAUCGGUCUACU--AGCGGGUG----UUAGUAACACUCAUUUUGCUUCG-UAGCGGAGCACAUG-AGCGGUGGGACCUCCCCCAUGGUAACAUGGACUCACCGGGCCAAAAGCCACGCCUCA---CGGCCUCAUGUGUGUGC---AACCCCA--GCACGGCAACUUGUUUGUGAAACC--CA-CCUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-AGACAC-UCGGGAUCU-GAGAAGGGGA-CCA-GGAG---UUCUUUAAAA---CUGCCUGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UAU-CAAUACUACAUU
>AY593839.1/546-1005
ACGCAGGAAUCCUAGACCAACCACAACCC-GUGCAA-CUGCAAGUUUCGCCCGGUCUUUC-CGGGUCUAGA----GAGACAAACAGCU-GUACUGAGAC---UGACUCCA----CGAUCGGUCUACU--AGCGGGUG----CUAGUAACACUUACUUUGCUUCG-UAGCGGAGCACAUG-AGCGACGGGAACACCCCCAUGGUAACAUGGACCCGCCGGGCCAAAAGCCACGCCUCA---CGGCCUCAUGUGUGUGC---AACCCCA--GCACGGCGAUGUACUUGUGAACCA--CA-CCUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUCG-GUUUCU-------AGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-AGACAC-UUGGGAUCU-GAGAAGGGGA-CCA-GGAG---UUCUGUAAAA---CUGCCUGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UAC--UCAAUUGUACU
>AY593847.1/545-1003
ACGCAGGAAUCCUGGACCAA-CCACACCC-GUGCAU-UUACAAUCUUCGCCCGGUCUUUC-CGGGUCUUGA----GAGGAGACUAAGU-GUACUGAGAC---UGACUCCA----CGAUCGGUCUACU--GGCGGGUA----UUAGUAACACUCACUUUGCUUCG-UAGCGGAGCACAUG-AGCGGUGGGACCCCCCCCAUGGUGACAUGGACCCACCGGGCCAAAAGCCACGCUU---C-ACGCCUCAUGUGUGUGC---AACCCCA--GCACGGCAAUUUGCUUGUGAAACA--CA-CCUCAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUCA-AUCUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-AGACAC-UCGGGAUCU-GAGAAGGGGA-CCA-GGAG---UUCUUUAAAA---CUGCCUGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CUUU-UAC-AAACAACAAUUA
>AJ251473.1/214-672
ACGCAGGUUUCCUCAACUGA-CACAA-CC-GUGCAAACAUGAAGUUUCGCCCGGUCUUUC-CGGGUCUUGA----GAGACGACAUU-U-GUACUGAGAU---CAACUCCA----CAAUUGGUCUACU--GGCGGGUG----CUAGUAAUGACUUUGUUGCUUCG-UAGCGGAGCACGCA-AGCCGCGGGAACUCCCCCUUGGUAACAAGGACCCGCGGGGCCGAAAGCCACGUUCUC-U-GAACCUUGCGUGUGUGC---AACCCCA--GCACGGUAAUACUGUCAUGAAACA--CA-CUUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-UUG-GGGC---UUCUAUCCAA---GCGCCCAAUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAG--CCGGCACCUUUU-CCUU-UAC-UCACAACUUGUU
>AY593849.1/610-1068
ACGCAGGUUUCCUCAACUGA-CAUAA-CC-GUGCAA-ACUGAAGUUUCGCCCGGUCUUUC-CGGGUCUUGA----GAGACGACA-UUU-GUACUGAAAU---CAACUCCA----CAAUUGGUCUACU--GGCGGGUG----CUAGUAAUGACUUUGUUGCUUCG-UAGCGGAGCACGCA-AGCCGCGGGAACUCCCCCUUGGUAACAAGGACCCGCGGGGCCGAAAGCCACGUUCUC-U-GAACCUUGCGUGUGUGC---AACCCCA--GCACGGUAACACUGUCACGAAACA--CA-CUUUAA---GGUAAC----------------------ACCGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-UUG-GGGC---UUCUAUCCAA---GCGCCCAAUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UAC-CCACAACUUACU
>AY593844.1/597-1056
AAGCAGGUUUCCUCAACUGA-CAU-ACCC-GUGCAA-CUUGAAGUUUCGCCUGGUCUUUC-CAGGUCUAGA----GAGACGACACUUU-GUACUGAACC---CAACUCCA----CGAUUGGUCUACU--GGCGGGUG----CUAGUAAUGGCUUUGUUGCUUCG-UAGCGGAGCAUGCA-AGCCGCGGGAACUCCCCCUUGGUGACAAGGACCCGCGGGGCCAAAAGCCACGUUCUC-U-GAACCUUGCAUGUGUGC---AACCCCA--GCACGGUGACACUGUUGUGAAACA--CA-CUUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-AGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUUUAAAA---GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UAU-ACAAAACCAUUU
>AF361253.1/413-905
CUAGCCGUUGCGCCUUAGCG-CACAGUCC----------UGAAGGCCCCACAUCUUGUGG-AUCUUGCCGU----GGACAUGUUUC----UGGCAUGUG---UUUCUCAAGCCUGCAACCGACGACU--GAACAGAC----GUGUGAACAG--UUUGAGUGUGG-UAGCGCUGUGUGAGUUGGCGGUGGAACCCCCUCGUGGUGACACGAGCCCCCGUGGCCAAAAGCCCAGUGUUUACAGCACCUCUCACAUCCAGGGAAACCCCACCCUGGCGCUCACUCUUAGUAACACU--UC-CUAGUA---GGUAUUAGGUGGUAAGCCGAGCUCUUCCUCGGUCUU--------------------GUUCUGAAUGCA-CACA-U-------GUCUAGGGGC--UAAGGAUGUCCUACAGGUACCCGCACGUAACCUUCAGAGAG-UGUGGAUCU-GAGUAGGAGA-CUGUGGUGCGCUGCUUUACAGACGUAGCCCAGUUUAAAAAACGUCUAU-GCCCCUACAGGGUCGCGGUGGGCCGCACCCUUUC-CUUU-UAC-AAACUUGGUUUU
>X96871.1/402-893
CUAGCCGUCGCGUC--UUAA-CGCGCAGC-CCUGAA-GG-----C----CCCACACCUUG-UGGAUCUUGC----CGUGGGUAUGUUU-CUGGCAUGUG---UUUCUCAAG---CCUGCAACCGAAGCCGAACAGCC----ACAUGAACAG--UUUGAGCGUGG-UAGCGCUGUGUGAGUUGGCGGUGGAUCCCCCUCGUGGUAACACGAGCCCCCGUGGCCAAAAGCCCAGUGUUUACAGCACCUCUCACAUCCAGGACGACCCCAUCCUGGCGCUCACUCUUAGU-AGUAU--GG-CUUAGUACGCAUUAG----------------------GUGGUAAGCCGAGCUCUCCCUCGGCCUUGUUCUGAAUGCA-CACA-U-------GUCUAGGGGC--UAAGGAUGUCCUACAGGUACCCGCACGUAACCUUCAGAGAG-UGCGGAUCU-GAGUAGGAGA-CCGUGGUGCACUGCUUUACAGAUGCAGCCCGGUUUAAAAAGCGUCUAU-GCCCCUACAGGGUAGCGGUGGGCCGCGCCCUUUC-CUUU-UAA-AACUACUUGUUC

Rfam family RF00210 maps to these 3 chains: 2NBX|1|A, 8HUJ|1|C, 8J7R|1|C See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Jump to results for:

  • Loop 1HL Column numbers: 7-11
  • Loop 2IL Column numbers: 34-35, 88-90
  • Loop 3IL Column numbers: 36-45, 79-87
  • Loop 4IL Column numbers: 48-50, 65-76
  • Loop 5IL Column numbers: 53-54, 60-62
  • Loop 6HL Column numbers: 54-60
  • Loop 7HL Column numbers: 164-169
  • Loop 8IL Column numbers: 179-181, 246-247
  • Loop 9J4 Column numbers: 182-183, 218-219, 229-232, 244-245
  • Loop 10IL Column numbers: 189-197, 210-212
  • Loop 11HL Column numbers: 201-206
  • Loop 12HL Column numbers: 221-227
  • Loop 13HL Column numbers: 235-241
  • Loop 14HL Column numbers: 257-270
  • Loop 15J3 Column numbers: 399-410, 461-463, 497-514
  • Loop 16IL Column numbers: 413-414, 455-458
  • Loop 17IL Column numbers: 415-416, 452-454
  • Loop 18IL Column numbers: 419-423, 447-449
  • Loop 19IL Column numbers: 426-427, 442-444
  • Loop 20HL Column numbers: 427-442
  • Loop 21IL Column numbers: 463-465, 496-497
  • Loop 22IL Column numbers: 467-469, 493-494
  • Loop 23IL Column numbers: 470-471, 490-492
  • Loop 24HL Column numbers: 472-489
  • Loop 25IL Column numbers: 526-528, 539-540
  • Loop 26HL Column numbers: 531-536

Loop 1 Hairpin loop

Column numbers: 7-11 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    GUUUC   54

    
    GAAUC   14

    
    GUUCC    7

    
    GUCUC    5

    
    GUCCC    2

    
    ACUUC    1

    
    AUUAU    1

    
    GCCUC    1

    
    GCUCC    1

    
    GUAGC    1

    
    GUAUC    1

    
    GUCGC    1

    
    GUUGC    1

    
    GUC-C    1

    
    Omitted sequenced and counts

    
    ----G    1
Click on headings to reorder table - View All Results for this Loop
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group HL_32346.4

Basepair signature:
cWW-F

100.00 82.78 2 0

2

Motif group HL_48778.2

Basepair signature:
cWW-F

100.00 66.79 1 0

Mini UNCG

3

Motif group HL_56131.2

Basepair signature:
cWW-F-F

100.00 29.73 2 2

4

Motif group HL_53890.2

Basepair signature:
cWW-F-F-F

98.90 30.94 3 1

5

Motif group HL_56334.1

Basepair signature:
cWW-F

97.80 61.97 2 1

Mini UNCG

6

Motif group HL_75660.5

Basepair signature:
cWW-F

96.70 53.42 2 1

7

Motif group HL_86870.2

Basepair signature:
cWW-F-F-F

94.51 64.53 1 1

8

Motif group HL_69752.2

Basepair signature:
cWW-F

92.31 42.40 3 1

9

Motif group HL_38901.2

Basepair signature:
cWW-F-cSH

90.11 38.31 2 1

tRNA D-loop

10

Motif group HL_48417.5

Basepair signature:
cWW-F-F

87.91 40.95 2 1

Loop 2 Internal loop

Column numbers: 34-35, 88-90 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    CA*U-G   87

    
    UG*CCA    1

    
    CG*U-G    1

    
    GA*U-C    1

    
    UA*U-A    1

    
    Omitted sequenced and counts

    
    --*---    1
Click on headings to reorder table - View All Results for this Loop
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

100.00 24.35 2 1

Major groove platform

2

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

100.00 23.19 2 1

Intercalated cWS

3

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

100.00 22.59 3 1

4

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

100.00 16.78 2 1

Major groove intercalation

5

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

100.00 7.98 4 1

6

Motif group IL_84476.1

Basepair signature:
cWW-cWW

98.90 33.32 3 2

Multiple bulged bases

7

Motif group IL_42771.1

Basepair signature:
cWW-cWW

98.90 25.90 1 1

Multiple bulged bases

8

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

98.90 18.34 1 1

Single stack bend

9

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

98.90 13.73 2 1

Single stack bend

10

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

98.90 13.57 3 1

Loop 3 Internal loop

Column numbers: 36-45, 79-87 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    A-CUUGAAAC*GUGACACUU   14

    
    A-CUUGAAAC*GUAACACUU    7

    
    A-CUGCAAGU*ACAAACAGA    6

    
    A-CUUGAAAU*GUGACAAUU    6

    
    A-CUUGAAAC*GUAACAUUU    4

    
    A-CUUGAAAC*GUGACAUUU    4

    
    A-CUUGAAGC*GUGACAUUU    3

    
    A-CUGCAAGU*ACGAACAGA    2

    
    A-CUUGGAAC*GUGACACUU    2

    
    A-UUUGAAAC*GUGACACUU    2

    
    A-UUUGAAGC*GUGACACUU    2

    
    A-UUUGGAAC*GUGACACUU    2

    
    A-AUUGAAAC*GUGACACUU    1

    
    A-CCUGAAAC*GUGACAUUU    1

    
    A-CUCGGAAC*GUGACGUUU    1

    
    A-CUGCAAGU*ACAAACAGC    1

    
    A-CUGCAAGU*ACAAACAGG    1

    
    A-CUGCAAGU*AUAAACAGA    1

    
    A-CUUGAAAC*GCGACAUUU    1

    
    A-CUUGAAAC*GUGACACGU    1

    
    A-CUUGAAAC*GUGACAUCU    1

    
    A-CUUGAAAC*GUGGCAUUU    1

    
    A-CUUGAAAC*GUGUCAUAC    1

    
    A-CUUGAAGC*GCGACACUU    1

    
    A-CUUGAAGC*GUAACAUUU    1

    
    A-CUUGAAGC*GUGACACUU    1

    
    A-CUUGAAGU*ACGACACUU    1

    
    A-CUUGGAAC*GUGACACCU    1

    
    A-CUUGGAGC*GCGACACUU    1

    
    A-CUUGGCAC*GUGACACCU    1

    
    A-UCUGAAAC*GUGACACUU    1

    
    A-UCUGAAGU*AUGACACUU    1

    
    A-UCUGCAGC*GUAACAUUU    1

    
    A-UCUGGAAC*GUGACAUUU    1

    
    A-UUUGAAAC*GUAACACUU    1

    
    A-UUUGAAAC*GUGACAUUU    1

    
    AACAUGAAGU*ACGACAUU-    1

    
    C-CAUAAAUC*CCCACACAG    1

    
    C-CUGCAAGU*ACAAACAGA    1

    
    G-CUGCAAGU*ACAAACAGA    1

    
    G-CUUGACAC*GUAACAUGU    1

    
    G-CUUGGCGC*GUAACAUGU    1

    
    G-UGGGAUAC*GCCAUCCUC    1

    
    G-UUUGAAAC*GUGACAAUU    1

    
    U-UUACAAUC*GAGACUAAG    1

    
    U-UUUGAAAC*GUGACACUU    1

    
    A-ACUGAAGU*ACGACA-UU    1

    
    A-ACUGUAAC*GA-AGCUUU    1

    
    ----UGAAGG*CAUGUUUC-    1

    
    A-GG-----C*GGGUAUGUU    1
No Matches Found View All Results for this Loop

Loop 4 Internal loop

Column numbers: 48-50, 65-76 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    CGC*GUCUAGA----G   76

    
    CGC*GUCUUGA----G    7

    
    CAC*GUCUAGA----G    2

    
    UUA*UUGUGGACCUUA    1

    
    CAC*GUCUUGA----G    1

    
    CCA*UUGCCGU----G    1

    
    CGC*GUCUAGU----G    1

    
    CGC*GUCUGGA----G    1

    
    CGC*GCCCACA-----    1

    
    Omitted sequenced and counts

    
    --C*AUCUUGC----C    1
Click on headings to reorder table - View All Results for this Loop
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

95.60 2.62 8 4

2

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

87.91 12.73 7 3

3

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

7.69 -24.09 5 4

4

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

1.10 -13.96 5 3

5

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

1.10 -45.78 8 6

Reverse kink-turn related

Loop 5 Internal loop

Column numbers: 53-54, 60-62 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    GG*C-C   88

    
    GG*CAC    1

    
    AC*G-U    1

    
    GU*U-U    1

    
    UC*G-A    1
Click on headings to reorder table - View All Results for this Loop
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_42771.1

Basepair signature:
cWW-cWW

98.91 24.24 3 1

Multiple bulged bases

2

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

98.91 22.65 3 1

3

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

98.91 19.92 1 1

4

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

98.91 13.28 3 1

5

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

98.91 11.88 1 1

Single bulged G

6

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

98.91 5.11 3 1

Stack and bulge

7

Motif group IL_84476.1

Basepair signature:
cWW-cWW

97.83 36.73 2 2

Multiple bulged bases

8

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

97.83 21.37 3 1

Intercalated cWS

9

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

97.83 20.23 2 1

Major groove intercalation

10

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

97.83 17.53 1 1

Single stack bend

Loop 6 Hairpin loop

Column numbers: 54-60 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    GUCUUUC   85

    
    CACCUUG    1

    
    CUUGUGG    1

    
    GGAUACC    1

    
    GGCUUUC    1

    
    GUCAUUC    1

    
    GUCCUUC    1

    
    UGGACCU    1
Click on headings to reorder table - View All Results for this Loop
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group HL_66103.1

Basepair signature:
cWW-F-F

97.83 4.35 5 3

2

Motif group HL_25967.2

Basepair signature:
cWW-cWW-F-F-F

96.74 37.01 2 2

3

Motif group HL_50318.1

Basepair signature:
cWW-cSH-F-F

95.65 17.58 5 4

4

Motif group HL_53890.2

Basepair signature:
cWW-F-F-F

95.65 15.93 3 1

5

Motif group HL_48417.5

Basepair signature:
cWW-F-F

94.57 32.27 3 1

6

Motif group HL_86870.2

Basepair signature:
cWW-F-F-F

94.57 4.95 1 1

7

Motif group HL_56131.2

Basepair signature:
cWW-F-F

94.57 4.41 4 2

8

Motif group HL_65313.1

Basepair signature:
cWW-F-F-F

93.48 0.10 3 1

9

Motif group HL_20535.2

Basepair signature:
cWW-F-F-F-F

93.48 -1.69 4 3

10

Motif group HL_08100.1

Basepair signature:
cWW-F-F-F

93.48 -2.19 4 2

Loop 7 Hairpin loop

Column numbers: 164-169 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    G-UAGC   85

    
    G-UCGC    4

    
    UGUAAA    1

    
    G-UAAC    1

    
    U-UAAU    1
Click on headings to reorder table - View All Results for this Loop
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group HL_75660.5

Basepair signature:
cWW-F

100.00 50.05 2 1

2

Motif group HL_53890.2

Basepair signature:
cWW-F-F-F

100.00 19.09 3 2

3

Motif group HL_56131.2

Basepair signature:
cWW-F-F

100.00 17.72 3 2

4

Motif group HL_70782.2

Basepair signature:
cWW-F

100.00 11.04 3 2

5

Motif group HL_48417.5

Basepair signature:
cWW-F-F

98.91 37.70 3 1

6

Motif group HL_46501.1

Basepair signature:
cWW-cWS

98.91 28.79 3 2

7

Motif group HL_48778.2

Basepair signature:
cWW-F

98.91 17.18 2 1

Mini UNCG

8

Motif group HL_35941.1

Basepair signature:
cWW-F

97.83 55.31 3 1

9

Motif group HL_60914.1

Basepair signature:
cWW-F

97.83 47.74 3 1

10

Motif group HL_32392.1

Basepair signature:
cWW-F-F

97.83 47.54 3 1

Loop 8 Internal loop

Column numbers: 179-181, 246-247 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    U-G*CA   44

    
    C-G*CG   24

    
    G-A*UC   14

    
    A-A*UU    3

    
    GUU*UC    2

    
    A-G*CU    1

    
    G-U*AU    1

    
    U-G*CG    1

    
    U-G*CU    1

    
    U-G*UA    1
Click on headings to reorder table - View All Results for this Loop
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

100.00 20.81 2 1

Major groove platform

2

Motif group IL_42771.1

Basepair signature:
cWW-cWW

98.91 24.40 3 1

Multiple bulged bases

3

Motif group IL_84476.1

Basepair signature:
cWW-cWW

97.83 32.79 3 2

Multiple bulged bases

4

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

97.83 22.85 2 1

Intercalated cWS

5

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

96.74 22.54 3 1

6

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

96.74 16.56 2 1

Major groove intercalation

7

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

96.74 7.52 4 1

8

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

95.65 16.96 1 1

Single stack bend

9

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

95.65 14.61 2 1

Single stack bend

10

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

95.65 12.52 3 1

Loop 9 4-way junction loop

Column numbers: 182-183, 218-219, 229-232, 244-245 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    GC*GG*CACG*CC   85

    
    GC*GG*CAUG*CC    2

    
    GG*UG*CCAG*CC    2

    
    GC*GG*CAAG*CC    1

    
    GC*GG*CGCG*CC    1

    
    Omitted sequenced and counts

    
    -C*GG*CAAG*CC    1
Click on headings to reorder table - View All Results for this Loop
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group J4_47478.1

Basepair signature:
cWW-F-cWW-cWS-cHW-cWW-cWW

100.00 55.62 10 2

2

Motif group J4_69073.1

Basepair signature:
cWW-cHS-cWW-cWS-cHW-cWW-cWW

100.00 55.62 10 2

3

Motif group J4_63076.1

Basepair signature:
cWW-tSS-cWW-cWW-cWW

100.00 18.52 5 2

class I ligase product junction

4

Motif group J4_24280.2

Basepair signature:
cWW-cWW-cWW-cWW

1.10 -4.78 6 1

Loop 10 Internal loop

Column numbers: 189-197, 210-212 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    GAACUCCUC*GAC   23

    
    GAACUCCCC*GAC   14

    
    GAACCCCUC*GAC   10

    
    GAACACCUC*GAC    6

    
    GAAUCCCUC*GAC    6

    
    GAACACCCC*GAC    4

    
    GAAUUCCUC*GAC    4

    
    GAACCCCCC*GAC    2

    
    GAACUCCGC*GAC    2

    
    GACCCCCCC*GAC    2

    
    GACCUCCCC*GAC    2

    
    GACCUCCUC*GAC    2

    
    GAGCUCCCC*GAC    2

    
    GAAACCCCC*GAC    1

    
    GAACCCCAC*GAC    1

    
    GAACCCCCU*AGC    1

    
    GAACUCCUC*GGC    1

    
    GACUCCCCC*GAC    1

    
    GAGCUCCUC*GAC    1

    
    GAUCCCCCU*AGC    1

    
    GAUCCCCUC*GAC    1

    
    GAUCUCCCC*GAC    1

    
    GAUUUCCCC*GAC    1

    
    GGCUUCCUC*GAC    1

    
    GAACAAC-A*UGC    1

    
    GAAUCAC-A*UGC    1
Click on headings to reorder table - View All Results for this Loop
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

53.26 -8.61 5 3

2

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

10.87 -6.19 5 3

3

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

7.61 -31.96 9 6

Reverse kink-turn related

4

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

4.35 -28.45 8 4

5

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

2.17 -76.38 7 5

cWH basepair with bulged bases

Loop 11 Hairpin loop

Column numbers: 201-206 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    GGUAAC   79

    
    GGUGAC    7

    
    GGCAAC    3

    
    GGCGAC    2

    
    GGAGAC    1
Click on headings to reorder table - View All Results for this Loop
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group HL_93535.1

Basepair signature:
cWW-F-F-F-F

100.00 90.61 2 0

2

Motif group HL_04783.2

Basepair signature:
cWW-F-F-F

100.00 82.39 1 0

3

Motif group HL_53890.2

Basepair signature:
cWW-F-F-F

100.00 78.46 2 0

4

Motif group HL_37824.7

Basepair signature:
cWW-F-F-F-F

100.00 72.53 0 0

GNRA

5

Motif group HL_50006.2

Basepair signature:
cWW-F-F

100.00 62.27 3 1

6

Motif group HL_52953.3

Basepair signature:
cWW-F-F-F-F

100.00 59.95 1 1

7

Motif group HL_75660.5

Basepair signature:
cWW-F

100.00 46.76 1 1

8

Motif group HL_13963.3

Basepair signature:
cWW-F-F

100.00 36.44 2 2

9

Motif group HL_65794.5

Basepair signature:
cWW-F-F-F-F

100.00 23.42 1 1

Pseudoknot geometry

10

Motif group HL_59843.1

Basepair signature:
cWW-F-F-F-F

100.00 23.14 4 2

Loop 12 Hairpin loop

Column numbers: 221-227 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    CCAAAAG   47

    
    CCGAAAG   43

    
    CCGCAAG    2
Click on headings to reorder table - View All Results for this Loop
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group HL_10540.1

Basepair signature:
cWW-F-F-F-F-F

100.00 47.92 2 2

2

Motif group HL_87553.1

Basepair signature:
cWW-F-F-F-F-F

100.00 47.60 3 2

3

Motif group HL_53890.2

Basepair signature:
cWW-F-F-F

100.00 39.94 2 1

4

Motif group HL_28075.1

Basepair signature:
cWW-F-F-F-F-F

100.00 23.66 2 2

5

Motif group HL_10453.3

Basepair signature:
cWW-F-F-F-F-F

100.00 21.70 4 2

tRNA anticodon loop

6

Motif group HL_80922.2

Basepair signature:
cWW-tSH-F

97.83 32.73 2 2

7

Motif group HL_04783.2

Basepair signature:
cWW-F-F-F

97.83 30.18 2 2

8

Motif group HL_65794.5

Basepair signature:
cWW-F-F-F-F

97.83 20.15 3 1

Pseudoknot geometry

9

Motif group HL_50006.2

Basepair signature:
cWW-F-F

97.83 18.54 2 2

10

Motif group HL_30068.2

Basepair signature:
cWW-F-F-F-F

97.83 4.38 4 2

Loop 13 Hairpin loop

Column numbers: 235-241 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    CUAAC-G   21

    
    UCA---C   12

    
    CUCAC-G    6

    
    CACAC-G    5

    
    CGAAU-G    4

    
    CAAAC-G    3

    
    CACAU-G    3

    
    CUUAC-G    3

    
    CUC-U-G    3

    
    UUUACAG    2

    
    CGGAC-G    2

    
    CUGAC-G    2

    
    CAC-U-G    2

    
    UUGACAG    1

    
    CAACU-G    1

    
    CAAUC-G    1

    
    CAGAU-G    1

    
    CCAAC-G    1

    
    CCAAU-G    1

    
    CGAAC-G    1

    
    CGCAA-G    1

    
    CGGAU-G    1

    
    CUAAC-U    1

    
    CUACC-G    1

    
    CUAGC-G    1

    
    CUCAU-G    1

    
    CUGAA-G    1

    
    CUGGC-G    1

    
    CUGUC-G    1

    
    CUUGU-G    1

    
    UUAGC-A    1

    
    UCACA--    1

    
    UUA-U-G    1

    
    UUC-C-A    1

    
    U---C-A    1

    
    U---C-U    1

    
    U---U-U    1
Click on headings to reorder table - View All Results for this Loop
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group HL_56334.1

Basepair signature:
cWW-F

90.22 11.19 2.5 2

Mini UNCG

2

Motif group HL_53890.2

Basepair signature:
cWW-F-F-F

73.91 0.39 2 2

3

Motif group HL_70782.2

Basepair signature:
cWW-F

69.57 14.34 3 2

4

Motif group HL_75660.5

Basepair signature:
cWW-F

68.48 -341.87 2 1

5

Motif group HL_04783.2

Basepair signature:
cWW-F-F-F

63.04 7.48 2 2

6

Motif group HL_50006.2

Basepair signature:
cWW-F-F

60.87 -10.61 3 2

7

Motif group HL_56131.2

Basepair signature:
cWW-F-F

59.78 4.31 3 2

8

Motif group HL_48778.2

Basepair signature:
cWW-F

56.52 -6.73 1 1

Mini UNCG

9

Motif group HL_37824.7

Basepair signature:
cWW-F-F-F-F

56.52 -18.55 1 1

GNRA

10

Motif group HL_93535.1

Basepair signature:
cWW-F-F-F-F

56.52 -361.13 2 2

Loop 14 Hairpin loop

Column numbers: 257-270 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    C---AACCCCA--G   79

    
    C---AAACCCA--G    3

    
    C---AACCCCG--G    3

    
    GGACGACCCCAUCC    1

    
    GGGAAACCCCACCC    1

    
    C---AGCCCCA--G    1

    
    C---AUUCCCA--G    1

    
    G---UUCAAUA--C    1

    
    U---AACCCCA--A    1

    
    U----UUCAAA--A    1
Click on headings to reorder table - View All Results for this Loop
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group HL_64690.6

Basepair signature:
cWW-cSW-F-F-F-F

92.39 7.38 4 2

2

Motif group HL_07951.3

Basepair signature:
cWW-F-F

92.39 5.81 4 3

tRNA D-loop

3

Motif group HL_66853.7

Basepair signature:
cWW-cWS-F-cSH

88.04 -4.56 4 4

4

Motif group HL_93324.4

Basepair signature:
cWW-F-F-F-F-F-F

4.35 -32.72 4 2

Pseudoknot geometry

5

Motif group HL_38046.1

Basepair signature:
cWW-F-F-F-F-F-F

3.26 -17.67 6 4

6

Motif group HL_32735.2

Basepair signature:
cWW-tSH-F-F-F-F-F

2.17 -17.14 3 3

7

Motif group HL_38808.1

Basepair signature:
cWW-cWW

2.17 -22.10 5 4

8

Motif group HL_80008.1

Basepair signature:
cWW-F-F-F-cSH-F

2.17 -62.54 5 5

9

Motif group HL_20167.2

Basepair signature:
cWW-F-F-F-F-F-F

2.17 -74.61 4 4

10

Motif group HL_21372.1

Basepair signature:
cWW-F-cSH-F-F

2.17 -78.46 7 5

Loop 15 3-way junction loop

Column numbers: 399-410, 461-463, 497-514 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    C--UAAGGAUGC*GGA*UUUAAAAAGCUUCUAU-G   62

    
    C--UAAGGAUGC*GGA*UUUAAAAAGCUUCUAC-G   10

    
    C--UAAGGAUGC*GGA*UUUAAAAAACUUCUAU-G    3

    
    C--UAAGGAUGC*GGG*CUUAAAAAGCUUCUAU-G    3

    
    CACGAAGGAUGC*GGC*GUUAAAAAACGUCUAGUG    1

    
    A--UAAGGAUGC*GGA*UUUAAAAAGCUUCUAU-G    1

    
    C--UAAGGAUGC*GGA*GUUAAAAAGCUUCUAU-G    1

    
    C--UAAGGAUGC*GGA*UUCAAAAAGCUUCUAC-G    1

    
    C--UAAGGAUGC*GGA*UUCAAAAAGCUUCUAU-G    1

    
    C--UAAGGAUGC*GGA*UUUAAAAAACUUCUAC-G    1

    
    C--UAAGGAUGC*GGA*UUUAAAAACCUUCUAU-G    1

    
    C--UAAGGAUGC*GGG*UUUAAAAAGCUUCUAU-G    1

    
    C--UAAGGAUGC*UGA*UUUAAAAAGCUUCUAU-G    1

    
    C--UAAGGAUGU*AGA*UUUAAAAAACGUCUAU-G    1

    
    C--UAAGGAUGU*AGA*UUUAAAAAGCGUCUAU-G    1

    
    C--UAAGGAUGU*GGA*UUUAAAAAGCUUCUAU-G    1

    
    C--UCCGGAUGC*GGA*UUUAAAAAGCUUCUAC-G    1

    
    C--GAAGGAUGC*GGC*GUUAAAAAACGUCUA--G    1
No Matches Found View All Results for this Loop

Loop 16 Internal loop

Column numbers: 413-414, 455-458 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    UU*AGAA   81

    
    UC*AGGA    5

    
    AG*AUCU    2

    
    UA*AGUA    2

    
    UC*AGAA    1

    
    UU*A--G    1
Click on headings to reorder table - View All Results for this Loop
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

98.91 74.35 2 0

Major groove intercalation

2

Motif group IL_82107.4

Basepair signature:
cWW-cWW

98.91 73.25 2 0

Multiple bulged bases

3

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

96.74 63.49 4 0

4

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

94.57 42.83 3 1

Intercalated cWS

5

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

93.48 48.40 5 1

6

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

93.48 35.03 4 1

7

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

93.48 31.76 4 1

8

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

92.39 10.51 5 2

9

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

91.30 75.85 2 0

Major groove platform; stack outside cWW

10

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

91.30 26.64 4 1

Loop 17 Internal loop

Column numbers: 415-416, 452-454 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    CA*U-G   88

    
    AA*U-G    2

    
    CA*UUG    1

    
    UA*U-G    1
Click on headings to reorder table - View All Results for this Loop
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_84476.1

Basepair signature:
cWW-cWW

97.83 33.35 3 2

Multiple bulged bases

2

Motif group IL_42771.1

Basepair signature:
cWW-cWW

97.83 25.79 1 1

Multiple bulged bases

3

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

97.83 23.76 2 1

Major groove platform

4

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

97.83 22.98 2 1

Intercalated cWS

5

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

96.74 22.38 3 1

6

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

96.74 17.50 1 1

Single stack bend

7

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

96.74 15.98 2 1

Major groove intercalation

8

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

96.74 13.07 2 1

Single stack bend

9

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

96.74 12.88 3 1

10

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

96.74 9.08 1 1

Single bulged C

Loop 18 Internal loop

Column numbers: 419-423, 447-449 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    UACCC*GGA   88

    
    UACAC*GGA    1

    
    UACCC*AGA    1

    
    UACCC*GAA    1

    
    UACCU*AGA    1
Click on headings to reorder table - View All Results for this Loop
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_06549.2

Basepair signature:
cWW-cWW

100.00 50.70 1 1

2

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

98.91 36.13 3 1

3

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

98.91 24.10 6 2

4

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

98.91 16.79 4 2

5

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

98.91 16.38 2 2

Minor groove platform

6

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

98.91 12.07 5 2

7

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

97.83 4.45 6 2

8

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

97.83 2.26 6 2

9

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

97.83 1.52 5 3

Multiple bulged bases

10

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

2.17 -23.19 7 3

Loop 19 Internal loop

Column numbers: 426-427, 442-444 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    AG*C-U   86

    
    AC*G-U    2

    
    GG*C-C    2

    
    AG*CUU    1

    
    AA*C-U    1
Click on headings to reorder table - View All Results for this Loop
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_84476.1

Basepair signature:
cWW-cWW

100.00 34.51 2 2

Multiple bulged bases

2

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

100.00 17.86 2 1

Major groove platform

3

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

100.00 8.42 3 1

4

Motif group IL_42771.1

Basepair signature:
cWW-cWW

98.91 24.24 3 1

Multiple bulged bases

5

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

98.91 22.51 3 1

6

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

98.91 22.25 4 1

Intercalated cWS

7

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

98.91 13.39 3 1

8

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

98.91 7.55 1 1

Single bulged G

9

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

98.91 2.38 1 1

Stack and bulge

10

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

97.83 16.71 1 1

Single stack bend

Loop 20 Hairpin loop

Column numbers: 427-442 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    GGUAACACG-CGACAC   33

    
    GGUAACAAG-CGACAC   12

    
    GGUAACAAG-AGACAC    9

    
    GGUAACACG-AGACAC    8

    
    GGUAACAUG-CGACAC    6

    
    GGUAACACG-GGACAC    4

    
    GGUAACACG-UGACAC    4

    
    CGUAACCUUCAGAGAG    2

    
    GGUAACACG-CGAAAC    2

    
    GGUAACAUG-AGACAC    2

    
    GGUAACAUG-UGACAC    2

    
    AGUAACAAG-CGACAC    1

    
    GGCAACAAG-CGACAC    1

    
    GGCAACACG-CGACAC    1

    
    GGCAACAUG-CGACAC    1

    
    GGGAACAUG-CGACAC    1

    
    GGUAACAAG-UGACAC    1

    
    GGUAACACG-CGCCAC    1

    
    GGUAACACG-CGUCAC    1
Click on headings to reorder table - View All Results for this Loop
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group HL_70658.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

3.26 -35.13 7 5

Loop 21 Internal loop

Column numbers: 463-465, 496-497 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    A-C*GU   75

    
    A-U*AU    4

    
    A-U*GU    4

    
    G-C*GC    3

    
    AUU*GU    1

    
    A-C*AU    1

    
    A-C*GG    1

    
    C-C*AG    1

    
    C-U*AG    1

    
    G-C*GU    1
Click on headings to reorder table - View All Results for this Loop
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_84476.1

Basepair signature:
cWW-cWW

98.91 31.48 2 2

Multiple bulged bases

2

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

97.83 14.09 3 1

Major groove platform

3

Motif group IL_42771.1

Basepair signature:
cWW-cWW

96.74 21.55 3 1

Multiple bulged bases

4

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

92.39 20.45 3 1

5

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

91.30 20.16 5 1

Intercalated cWS

6

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

91.30 16.22 2 1

7

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

91.30 14.79 2 1

Major groove intercalation

8

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

91.30 9.27 5 1

9

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

91.30 7.59 2 1

Single bulged G

10

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

91.30 1.29 2 1

Stack and bulge

Loop 22 Internal loop

Column numbers: 467-469, 493-494 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    G-G*CC   51

    
    A-G*CU   12

    
    G-A*UC   12

    
    G-G*CU    5

    
    G-G*UC    5

    
    GUG*CC    2

    
    A-G*CC    2

    
    A-C*GU    1

    
    G-A*CC    1

    
    G-G*UU    1
Click on headings to reorder table - View All Results for this Loop
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

100.00 16.54 2 1

Major groove platform

2

Motif group IL_84476.1

Basepair signature:
cWW-cWW

98.91 32.39 2 2

Multiple bulged bases

3

Motif group IL_42771.1

Basepair signature:
cWW-cWW

95.65 21.68 3 1

Multiple bulged bases

4

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

95.65 21.27 3 1

5

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

95.65 21.17 3 1

Intercalated cWS

6

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

89.13 13.14 1 1

7

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

89.13 7.31 1 1

Single bulged G

8

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

84.78 17.77 2 1

Major groove intercalation

9

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

84.78 15.85 1 1

Single stack bend

10

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

84.78 15.22 1 1

Single stack bend

Loop 23 Internal loop

Column numbers: 470-471, 490-492 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    GG*CGC   43

    
    GA*UGC   27

    
    GG*UGC    9

    
    AA*UGU    2

    
    GA*UGU    2

    
    GG*CGU    2

    
    GU*AGC    2

    
    UA*UGA    2

    
    GA*CGC    1

    
    GG*CAC    1

    
    GG*CCC    1
Click on headings to reorder table - View All Results for this Loop
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

100.00 96.44 0 0

Single bulged G

2

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

100.00 93.14 0 0

Major groove intercalation

3

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

100.00 92.28 3 0

4

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

100.00 81.73 0 0

Major groove platform

5

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

100.00 80.51 3 0

Major groove platform

6

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

100.00 62.25 3 0

Single stack bend

7

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

100.00 52.95 5 1

Intercalated cWS

8

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

100.00 50.55 3 1

9

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

100.00 49.77 1 1

10

Motif group IL_42771.1

Basepair signature:
cWW-cWW

100.00 43.03 3 1

Multiple bulged bases

Loop 24 Hairpin loop

Column numbers: 472-489 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    C---UUCUUUAAAA---G   24

    
    C---UUCUAUAAAA---G   20

    
    C---UUCUGUAAAA---G   13

    
    G---UUCUAUCAAA---C    8

    
    C---UUCUUUAAA----G    6

    
    G---UUCUUUAAAA---C    3

    
    C---UUCUAUCCAA---G    2

    
    G---UUCUAUAAAA---C    2

    
    GCACUGCUUUACAGAUGC    1

    
    GCGCUGCUUUACAGACGU    1

    
    C---CUCUAUAAAG---G    1

    
    C---CUCUAUCUUG---G    1

    
    C---UUCUCUAAAA---G    1

    
    C---UUCUUUAAAG---G    1

    
    G---UUCUAUAAAG---C    1

    
    G---UUCUGUAAAA---C    1

    
    U---CUCUAUAAAA---U    1

    
    U---UUCUGUAAAA---A    1

    
    U---UUCUUUAAAA---G    1

    
    C---CUCUAUCAG----G    1

    
    C---CUCUUUAAG----G    1

    
    C---UCCUUUAAA----G    1
Click on headings to reorder table - View All Results for this Loop
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group HL_01962.2

Basepair signature:
cWW-tWH-tWH-F

80.43 6.31 4 2

2

Motif group HL_01255.1

Basepair signature:
F-F-F-F-F-F-F-F

58.70 -8.49 5 4

3

Motif group HL_91503.7

Basepair signature:
cWW-F-F-F-F-F-F-F

25.00 -9.14 5 3

4

Motif group HL_12870.1

Basepair signature:
cWW-tHW-F-F-F-F-F-F-F-F-F

19.57 -1007.28 6 4

5

Motif group HL_98252.1

Basepair signature:
cWW-tWW-F-F-F-F

7.61 -44.72 7 5

6

Motif group HL_34964.1

Basepair signature:
cWW-F-F-F-F-F

6.52 -46.06 6 4

7

Motif group HL_90620.1

Basepair signature:
cWW-F-F-F-F-cSW-cSH-F

1.09 -35.43 6 4

8

Motif group HL_69139.1

Basepair signature:
cWW-F-F-F-F-F-F-F-F

1.09 -63.06 6 6

9

Motif group HL_36684.4

Basepair signature:
cWW-F-F-F-F-F-F-F-F-F

1.09 -186.64 6 5

10

Motif group HL_97733.1

Basepair signature:
cWW-F-F-F-cSH-F

1.09 -238.38 7 7

Loop 25 Internal loop

Column numbers: 526-528, 539-540 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    GAC*GC   88

    
    CAG*CU    1

    
    GGG*CC    1

    
    UAG*CG    1

    
    UCG*CA    1
Click on headings to reorder table - View All Results for this Loop
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

100.00 97.99 1 0

2

Motif group IL_42771.1

Basepair signature:
cWW-cWW

100.00 94.59 4 0

Multiple bulged bases

3

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

100.00 94.54 2 0

Single stack bend

4

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

100.00 94.50 0 0

Major groove platform

5

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

100.00 93.88 0 0

Single bulged A

6

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

100.00 93.32 1 0

Single stack bend

7

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

100.00 92.25 1 0

Major groove intercalation

8

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

100.00 85.77 2 0

Stack and bulge

9

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

100.00 72.66 4 0

Major groove platform

10

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

100.00 70.77 1 1

Loop 26 Hairpin loop

Column numbers: 531-536 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    GAGG-C   83

    
    GAGG-U    4

    
    GUGGGC    2

    
    GGGA-U    1

    
    GAG--C    1

    
    --GG-A    1
Click on headings to reorder table - View All Results for this Loop
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group HL_75660.5

Basepair signature:
cWW-F

98.91 -68.40 1 1

2

Motif group HL_48417.5

Basepair signature:
cWW-F-F

96.74 53.78 3 1

3

Motif group HL_38901.2

Basepair signature:
cWW-F-cSH

96.74 39.47 1 1

tRNA D-loop

4

Motif group HL_60914.1

Basepair signature:
cWW-F

96.74 -63.21 3 1

5

Motif group HL_26631.1

Basepair signature:
cWW-F-F-F

94.57 -85.31 3 1

6

Motif group HL_56131.2

Basepair signature:
cWW-F-F

92.39 -0.32 2 2

7

Motif group HL_35941.1

Basepair signature:
cWW-F

91.30 9.76 4 2

8

Motif group HL_38168.1

Basepair signature:
cWW-F

91.30 -101.78 4 2

9

Motif group HL_86870.2

Basepair signature:
cWW-F-F-F

90.22 0.92 3 2

10

Motif group HL_32392.1

Basepair signature:
cWW-F-F

90.22 -2.29 4 2

Coloring options: