RNA 3D Hub

JAR3D Query RF00210-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF00210 maps to these 3 chains: 2NBX|1|A, 8HUJ|1|C, 8J7R|1|C See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 3 Internal loop

Column numbers: 36-45, 79-87 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    A-CUUGAAAC*GUGACACUU   14

    
    A-CUUGAAAC*GUAACACUU    7

    
    A-CUGCAAGU*ACAAACAGA    6

    
    A-CUUGAAAU*GUGACAAUU    6

    
    A-CUUGAAAC*GUAACAUUU    4

    
    A-CUUGAAAC*GUGACAUUU    4

    
    A-CUUGAAGC*GUGACAUUU    3

    
    A-CUGCAAGU*ACGAACAGA    2

    
    A-CUUGGAAC*GUGACACUU    2

    
    A-UUUGAAAC*GUGACACUU    2

    
    A-UUUGAAGC*GUGACACUU    2

    
    A-UUUGGAAC*GUGACACUU    2

    
    A-AUUGAAAC*GUGACACUU    1

    
    A-CCUGAAAC*GUGACAUUU    1

    
    A-CUCGGAAC*GUGACGUUU    1

    
    A-CUGCAAGU*ACAAACAGC    1

    
    A-CUGCAAGU*ACAAACAGG    1

    
    A-CUGCAAGU*AUAAACAGA    1

    
    A-CUUGAAAC*GCGACAUUU    1

    
    A-CUUGAAAC*GUGACACGU    1

    
    A-CUUGAAAC*GUGACAUCU    1

    
    A-CUUGAAAC*GUGGCAUUU    1

    
    A-CUUGAAAC*GUGUCAUAC    1

    
    A-CUUGAAGC*GCGACACUU    1

    
    A-CUUGAAGC*GUAACAUUU    1

    
    A-CUUGAAGC*GUGACACUU    1

    
    A-CUUGAAGU*ACGACACUU    1

    
    A-CUUGGAAC*GUGACACCU    1

    
    A-CUUGGAGC*GCGACACUU    1

    
    A-CUUGGCAC*GUGACACCU    1

    
    A-UCUGAAAC*GUGACACUU    1

    
    A-UCUGAAGU*AUGACACUU    1

    
    A-UCUGCAGC*GUAACAUUU    1

    
    A-UCUGGAAC*GUGACAUUU    1

    
    A-UUUGAAAC*GUAACACUU    1

    
    A-UUUGAAAC*GUGACAUUU    1

    
    AACAUGAAGU*ACGACAUU-    1

    
    C-CAUAAAUC*CCCACACAG    1

    
    C-CUGCAAGU*ACAAACAGA    1

    
    G-CUGCAAGU*ACAAACAGA    1

    
    G-CUUGACAC*GUAACAUGU    1

    
    G-CUUGGCGC*GUAACAUGU    1

    
    G-UGGGAUAC*GCCAUCCUC    1

    
    G-UUUGAAAC*GUGACAAUU    1

    
    U-UUACAAUC*GAGACUAAG    1

    
    U-UUUGAAAC*GUGACACUU    1

    
    A-ACUGAAGU*ACGACA-UU    1

    
    A-ACUGUAAC*GA-AGCUUU    1

    
    ----UGAAGG*CAUGUUUC-    1

    
    A-GG-----C*GGGUAUGUU    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -67.01 11 7

2

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -68.78 12 9

3

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -80.19 8 6

tSH-tHW-tHH-tHS

4

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -85.59 10 8

5

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -91.35 10 7

6

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -105.78 12 9

7

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -107.76 9 8

8

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -116.66 11 9

9

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -119.99 10 8

10

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -123.33 11 9

11

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -124.37 11 9

12

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -127.66 12 8

13

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -128.33 11 8

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

14

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -132.47 10 8

15

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -132.49 13 10

16

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -133.60 10 8

17

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -137.90 9 7

18

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -138.04 13 10

Pseudoknot

19

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -138.83 10 6

20

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -139.10 13 10

21

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -139.98 9.5 8

22

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -140.34 12 9.5

23

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -142.96 10 8

Bacterial 5S Loop E

24

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -149.06 15 12

25

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -149.49 13 10

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

26

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -152.18 11 9

27

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -154.01 11 8

28

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -154.77 8 7

8x7 Sarcin-Ricin; G-bulge

29

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -156.35 11 9

30

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -156.65 13 10

10x8 Sarcin-Ricin; G-bulge

31

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -162.34 11 9

32

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -162.40 9 7

33

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -164.03 14 11

34

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -165.51 9 8

Kink-turn related

35

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -166.82 9 7

36

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -167.05 7 6

Triple sheared with non-canonical cWW

37

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -168.48 12 9

38

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -168.64 12 8.5

39

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -171.30 12 9

40

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -172.78 10 8

41

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -172.80 14 11

42

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -175.92 11 7

Kink-turn with non-sequential stacking

43

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -176.82 9 7

44

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -178.06 10 8

8x7 Sarcin-Ricin; G-bulge

45

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -179.90 9 7

tWH-tWH-tHW-tHW

46

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -182.21 10 8

Kink-turn

47

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -183.14 13 10

48

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -185.46 9 7

49

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -185.74 12 10

50

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -187.03 12 11

51

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -187.42 11 8.5

52

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -187.43 11 9

Kink-turn

53

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -189.59 10 8

8x6 Sarcin-Ricin with inserted A; G-bulge

54

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -190.86 11 8

55

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -194.52 11 9

56

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -194.82 10 7

57

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -195.27 13 9

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

58

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -198.13 10 8

59

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -200.07 9 7

60

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -200.50 12 10

61

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -201.07 12 10

Kink-turn related

62

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -201.28 12 9

63

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -204.02 10 8

64

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -204.49 8 7

8x6 Sarcin-Ricin with inserted Y; G-bulge

65

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -206.44 11 9

66

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -206.81 10 7

67

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -207.28 9 6

Kink-turn related

68

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -211.37 10 10

69

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -211.66 9.5 7

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

70

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -211.85 11 9

71

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -213.29 8 7

Reverse turn

72

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -213.60 14 11

73

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -215.79 12 8

Minor groove platform related

74

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -216.74 9 7

Kink-turn

75

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -221.87 10 8

tSH-tHS-tHW

76

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -223.18 10 9

8x6 Sarcin-Ricin with bulged A; G-bulge

77

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -223.30 12 10

78

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -223.83 11 8

79

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -225.14 11 7

Kink-turn

80

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -226.00 11 9

81

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -226.92 9 7

82

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -229.61 9 7

83

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -230.12 11 9

7x7 Sarcin-Ricin with intercalated A; G-bulge

84

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -231.17 12 9

Kink-turn

85

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -236.07 9 8

tHW-tHW cross-strand stack

86

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -237.00 9 7

87

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -237.55 14 10

88

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -238.51 12 10

89

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -239.28 11 9

Kink-turn

90

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -241.06 10 7

91

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -243.76 13 11

92

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -244.14 10 8

93

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -249.72 14 11

94

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -255.22 17 14

Kink-turn

95

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -256.67 9 8

tSH-tSH-tHH-tHS

96

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -257.70 11.5 10

Other IL

97

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -258.68 9 8

98

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -259.78 12 9

99

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -260.04 9 8

Sarcin-Ricin target in LSU H95; G-bulge

100

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -263.06 12 9

Kink-turn

101

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -264.47 9 7

102

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -265.17 12 10

103

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -265.28 12 9

104

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -265.76 10 8

105

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -266.22 10 8

106

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -267.14 9 8

7x6 Sarcin-Ricin; G-bulge

107

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -268.28 10 7

UAA/GAN related

108

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -268.29 12 10

109

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -268.42 9 7

Other IL

110

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -270.69 12 10

111

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -271.97 12 11

112

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -272.10 8 8

Double sheared; A in syn; two near cWW pairs

113

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -272.11 10 8.5

Kink-turn

114

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -273.16 12 8.5

tSH-tHW

115

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -276.56 11 10

116

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -277.49 10 9

117

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -278.83 11 8

118

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -279.17 9 7.5

Triple sheared related

119

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -279.27 11 9

120

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -280.14 13 9

121

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -280.89 10 7

tSH-tHW-tWH-tHS

122

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -281.53 9 8

123

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -285.28 12 10

124

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -286.08 13 11

125

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -286.71 11 8

126

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -290.09 10 8

Kink-turn

127

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -290.37 17 14

128

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -291.51 10 10

129

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -295.36 12 8

Kink-turn

130

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -296.34 13 13

131

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -298.28 10 8

132

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -298.95 12 9

Kink-turn with embedded cWW pair

133

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -301.20 9 7

134

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -302.31 13 11

135

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -304.10 11 8

Kink-turn

136

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -305.16 10 8

6x5 Sarcin-Ricin; G-bulge

137

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -308.09 9 8

UAA/GAN with extra stack

138

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -308.70 13 11

139

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -311.72 10 10

140

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -312.52 9 8

UAA/GAN with tHH

141

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -313.71 16 13

Kink-turn related

142

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -314.00 19 17

143

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -314.19 10 8

144

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -315.60 13 11

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

145

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -317.72 10 8

tSH-tWH-tHS-cWW

146

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -318.60 19 17

147

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -319.06 11 11

148

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -319.49 14 11

149

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -322.57 12 9

150

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -323.07 18 16

151

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -323.77 14.5 11

Part of G-quadruplex

152

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -327.00 10 9

153

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -327.53 10 8

154

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -328.30 11 8

155

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -328.52 13 11

156

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -329.98 12 9

Reverse kink-turn

157

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -331.53 10 8

UAA/GAN with extra cWW

158

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -349.57 10 9

tSH-tHH-tHS

159

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -351.04 12 9

160

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -354.41 14 13

Pseudoknot

161

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -360.04 12 9

Kink-turn related

162

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -363.37 11 8

163

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -366.08 15 12

164

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -366.85 10 8

165

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -367.52 11 9

166

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -367.86 9 8

Quadruple sheared

167

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -370.20 11 8

168

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -374.28 16 13

169

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -375.05 9 8

170

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -377.43 13 11

171

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -379.19 17 16

172

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -381.71 11 9

173

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -384.97 12 10

174

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -389.57 11 9

Pseudoknot

175

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -414.69 11 8

176

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -416.02 14 14

177

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -425.13 10 9

178

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -430.97 11 10

179

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -433.20 13 10

Kink-turn from U4

180

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -434.66 10 8

181

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -434.89 13 12

Reverse kink-turn related

182

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -438.75 15 12

183

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -442.99 12 10

184

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -447.28 11 10

185

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -452.64 12 9

186

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -454.34 12 10

187

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -456.52 11 9

Intercalated tWH

188

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -456.88 12 10

189

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -478.09 19 17.5

190

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -484.80 9 9

cWH basepair and non-canonical AC

191

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -487.84 11 9

192

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -488.23 18 16

193

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -489.10 12 9

tSH-tHW

194

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -489.75 12 9

Triple sheared

195

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -496.47 11 9

196

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -498.42 10 9

197

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -499.32 12 9

198

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -512.02 13 10

199

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -515.26 11 9

AAA cross-strand stack

200

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -523.90 10 9

180 degree turn

201

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -531.59 11 10

202

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -533.31 11 10

Decoding loop related

203

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -542.82 13 10

204

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -546.57 9 8

UAA/GAN

205

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -567.09 9 8

Double sheared with non-canonical cWW

206

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -575.44 11 8

UAA/GAN

207

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -598.69 9 8

Triple non-canonical cWW pairs

208

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -598.96 11 9

209

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -607.40 11 10

210

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -615.06 11 9

211

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -617.46 11 9

Receptor of 11-nt loop-receptor motif

212

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -628.79 11 9

213

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -630.66 13 10

Receptor of 11-nt loop-receptor motif

214

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -634.08 11 10

Double sheared

215

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -648.52 11 9

tSH-tWH-tHS

216

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -665.87 12 9

5x5 Sarcin-Ricin with intercalated A; G-bulge

217

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -698.19 9 9

Triple sheared

218

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -698.40 12 9

219

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -698.84 11 10

220

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -703.65 10 10

Tandem non-canonical cWW pairs

221

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -710.27 11 9

222

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -711.12 12 11

223

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -712.83 12 10

224

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -728.09 11 9

tSH-tHW

225

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -734.55 12 10

Other IL

226

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -757.25 10 9

227

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -785.37 10 9

228

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -799.79 11 9

UAA/GAN variation

229

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -835.98 10 9

230

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -846.27 10 9

Double sheared

231

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -849.65 12 10

232

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -852.35 11 9

UAA/GAN related

233

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -868.96 11 10

234

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -870.35 10 10

Tandem non-canonical cWW pairs

235

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -893.63 10 10

Tandem non-canonical cWW pairs

236

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -898.68 12 10

237

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -907.38 11 10

Isolated non-canonical cWW pair

238

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -957.02 12 10

239

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -967.28 11 11

240

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -1048.31 11 11

241

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -1194.44 12 11

Isolated non-canonical cWW pair

242

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -1314.38 12 11

Isolated cWH basepair

243

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -3999.45 13 12

Kink-turn related

244

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -4301.50 21 20

245

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -4369.23 16 15

246

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -4388.12 16 14

247

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4478.64 12 12

248

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4740.24 15 13

249

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -4891.20 13 12

250

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -4921.77 14 11

251

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -4933.80 12 10

252

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -4963.23 12 11

253

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -4968.85 14 11

254

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -4968.97 14 11

255

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -5002.73 12 11

256

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -5035.98 15 14

257

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -5088.73 12 10

Vitamin B12 Aptamer

258

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -5092.58 13 11

259

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -5103.07 14 12

260

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -5105.36 15 14

261

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -5115.65 15 13

262

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -5121.12 12 11

263

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -5121.48 14 12

264

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -5131.30 11 10

265

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5138.08 13 10

266

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -5148.49 14 14

Part of G-quadruplex

267

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5168.21 13 10

268

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -5177.69 16 14

Pseudoknot

269

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -5263.80 13 12

270

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -5268.12 13 10

271

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -5293.51 14 12

272

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5313.29 13 12

273

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -5365.37 11 10

Kink-turn related

274

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -5433.09 15 12

275

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -5450.05 12 11

276

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -5456.77 14 11

Reverse kink-turn related

277

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -5488.10 12 11

278

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -5508.02 11 10

279

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -5677.66 12 9

280

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -5678.55 11 10

281

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -5693.45 11 10

282

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -5703.01 13 13

283

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -5710.34 11 10

284

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -5788.58 14 12

285

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -5811.69 14 11

286

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -5823.20 11 10

cWH basepair with bulged bases

287

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -5837.49 14 12

288

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -5898.55 12 9

289

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -5913.49 14 12

290

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -5914.43 13 11

291

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -5919.01 12 9

292

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -6093.08 13 11

293

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -6127.78 14 12

294

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -6150.27 13 11

295

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -6170.51 12 11.5

296

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -6204.92 10 10

297

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -6337.06 13 12

298

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -6352.67 12 10

Minor groove platform

299

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -6366.93 13 12

300

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -6401.58 12 11

301

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -6504.30 12 10

302

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -6576.17 12 9

Kink-turn

303

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -6609.33 11 11

304

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -6693.85 14 13

Major groove intercalation

305

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -6757.59 9 9

C-loop with bulged stacked A's

306

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -6888.85 11 9

307

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -6951.20 11 10

Symmetric double minor groove platform

308

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -6957.92 10 9

309

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -6998.48 12 11

310

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -7062.84 14 12

311

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -7090.20 12 10

312

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -7166.73 12 10

313

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -7192.19 11 9

314

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -7252.83 13 11

8-nt loop receptor

315

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -7366.47 12 11

316

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -7404.60 13 11

SSU/LSU pseudoknot

317

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -7464.78 11 11

318

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -7493.97 13 11

319

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -7536.82 13 11

320

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -7569.72 12 12

321

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -7687.47 12 11

Major groove intercalation

322

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -7688.39 14 12

323

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -7735.05 12 10

324

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -7858.57 13 11

325

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -7945.59 12 10

326

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -8036.26 11 9

327

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -8036.48 13 12

328

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -8174.38 11 10

329

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -8272.78 12 11

330

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -8295.92 11 11

331

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -8313.25 12 11

332

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -8323.91 13 11

333

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -8331.82 13 11

334

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -8487.37 13 13

Major groove platform

335

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -8712.29 11 10

336

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -8756.81 13 11

Multiple bulged bases

337

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8792.34 10 10

C-loop

338

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -8832.51 11 11

Isolated non-canonical cWW pair

339

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -9059.22 11 10

340

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -9185.72 13 11

341

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -9323.03 12 10

342

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9360.97 14 11

343

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -9565.35 14 11

344

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -9587.10 12 10

345

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -9609.78 11 10

Minor groove platform

346

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -9617.25 12 11

347

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -9685.30 14 10

Multiple bulged bases

348

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -9721.04 13 12

Bulged stacked bases

349

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -9950.03 13 10

350

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -9999.00 13 13

Single bulged G

351

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 13 11

352

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 13 12

Major groove platform with intercalation

353

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 12 11

C-loop

354

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 12 11

355

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 13 12

356

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 13.5 13

357

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 14 12

358

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -9999.00 12 12

Major groove platform with intercalated tWH

359

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 11 11

Isolated non-canonical cWW pair

360

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 12 12

Minor groove platform

361

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 15 13

362

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 12 12

363

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 12 11

364

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 12.5 11

365

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 13 13

Single stack bend

366

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 12 12

Isolated non-canonical cWW pair

367

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 13 11

Left turn

368

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -9999.00 13 13

Single bulged A

369

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 12 11

Decoding loop related

370

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 10

Stack and bulge

371

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 13 12

372

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -9999.00 12 11

373

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -9999.00 12 11

374

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9999.00 13 12

Multiple bulged bases

375

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 12 12

Isolated cWS basepair

376

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 12 11

Isolated non-canonical cWW contact

377

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 13 12

378

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -9999.00 11 11

Minor groove platform

379

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 13 12

Major groove platform

380

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -9999.00 11 10

381

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9999.00 12 12

Major groove platform; stack outside cWW

382

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -9999.00 12 11

383

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 12 12

Minor groove platform

384

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -9999.00 11 10

385

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 12 12

386

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 11 11

Isolated non-canonical cWW pair

387

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 13 13

388

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -9999.00 13 13

Single bulged C

389

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 12 10

390

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 15 13

391

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -9999.00 12 11

Major groove intercalation

392

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -9999.00 13 12

Isolated tWW turn

393

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 12 12

Major groove minor groove platform; mini C-loop

394

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 14 12

395

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 12 11

396

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 12 12

397

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 12 12

398

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -9999.00 11 10

Major groove minor groove platform with intercalation; mini C-loop

399

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 13 12

Intercalated cWS

400

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -9999.00 12 12

Multiple bulged bases

401

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 12 10

402

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 10 10

403

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -9999.00 12 11

404

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -9999.00 12 12

Multiple bulged bases

405

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -9999.00 13 12

Isolated tHS basepair with bulges

406

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 13 13

Single bulged U

407

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -9999.00 11 11

408

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 12 12

Single stack bend

409

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 13 12

410

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 12 11

Minor groove platform, major groove intercalation

411

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -9999.00 14 12

Coloring options: