RNA 3D Hub

JAR3D Query RF00210-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF00210 maps to these 3 chains: 2NBX|1|A, 8HUJ|1|C, 8J7R|1|C See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 10 Internal loop

Column numbers: 189-197, 210-212 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    GAACUCCUC*GAC   23

    
    GAACUCCCC*GAC   14

    
    GAACCCCUC*GAC   10

    
    GAACACCUC*GAC    6

    
    GAAUCCCUC*GAC    6

    
    GAACACCCC*GAC    4

    
    GAAUUCCUC*GAC    4

    
    GAACCCCCC*GAC    2

    
    GAACUCCGC*GAC    2

    
    GACCCCCCC*GAC    2

    
    GACCUCCCC*GAC    2

    
    GACCUCCUC*GAC    2

    
    GAGCUCCCC*GAC    2

    
    GAAACCCCC*GAC    1

    
    GAACCCCAC*GAC    1

    
    GAACCCCCU*AGC    1

    
    GAACUCCUC*GGC    1

    
    GACUCCCCC*GAC    1

    
    GAGCUCCUC*GAC    1

    
    GAUCCCCCU*AGC    1

    
    GAUCCCCUC*GAC    1

    
    GAUCUCCCC*GAC    1

    
    GAUUUCCCC*GAC    1

    
    GGCUUCCUC*GAC    1

    
    GAACAAC-A*UGC    1

    
    GAAUCAC-A*UGC    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

53.26 -8.61 5 3

2

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

10.87 -6.19 5 3

3

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

7.61 -31.96 9 6

Reverse kink-turn related

4

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

4.35 -28.45 8 4

5

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

2.17 -76.38 7 5

cWH basepair with bulged bases

6

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -52.60 9 5

7

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -55.89 7.5 5

8

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -61.54 11 7

9

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -62.25 10 6

10

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -64.02 7 4

11

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -65.69 7 5

12

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -65.82 9 5

13

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -66.22 8 6

14

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -66.32 11 7

15

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -68.19 9 5

16

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -68.33 5 5

Kink-turn related

17

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -68.93 10 7

18

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -69.57 8 4

19

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -72.70 6 6

20

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -74.73 8 6

21

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -75.63 9 7

22

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -77.01 6 4

23

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -78.54 6 4

Minor groove platform

24

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -78.58 6 6

25

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -82.45 8 6

26

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -82.65 9 5

27

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -85.62 7 5

Reverse kink-turn related

28

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -86.23 8 6

29

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -87.12 7 7

30

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -89.57 8 7

Vitamin B12 Aptamer

31

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -89.61 9 5

32

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -90.45 10 7

33

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -91.13 9 7

34

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -92.22 10 7

35

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -95.40 10 6

36

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -95.82 11 7

37

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -96.82 11 7

38

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -98.12 9 6

39

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -100.39 10 6

Reverse turn

40

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -113.74 8 7

41

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -114.63 10 7

42

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -114.82 9 6

43

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -115.85 11 8

44

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -116.43 5 5

45

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -123.08 9 6

46

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -124.77 7 5

47

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -126.83 6 5

tSH-tHW

48

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -127.30 10 7

49

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -128.03 7 7

50

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -128.52 8 6

51

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -130.91 11 7

52

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -133.30 11 8

53

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -135.00 10 6

54

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -141.85 8 8

55

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -141.98 9 6

56

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -144.64 10 7

57

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -145.33 11 7

58

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -147.15 8 4

59

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -147.96 8 7

60

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -151.20 11 10

61

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -154.34 12 9

62

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -154.86 8 6

63

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -154.87 9 5

64

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -156.22 7 5

65

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -157.10 8 7

66

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -157.83 5 5

Major groove intercalation

67

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -160.74 5 5

68

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -162.97 8 6

69

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -162.99 10 6

Major groove intercalation

70

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -164.50 12 8

Pseudoknot

71

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -165.19 8 6

Pseudoknot

72

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -170.46 9 9

73

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -170.59 8 4

74

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -172.29 11 10

Pseudoknot

75

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -172.89 8 5

76

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -172.93 6 6

77

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -173.59 6 6

78

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -173.77 13 10

79

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -174.59 8 6

Reverse kink-turn

80

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -176.52 11 8

81

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -178.12 12 10

82

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -178.74 9 7

83

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -179.38 9 7

84

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -180.57 11 7

Kink-turn related

85

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -180.91 10 7

Kink-turn

86

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -181.56 8 5

87

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -181.61 14 12

88

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -182.23 11 7

Kink-turn

89

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -182.29 9 7

90

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -182.40 13 11

91

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -182.56 8 6

92

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -182.75 6 4

93

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -182.92 8 5

94

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -183.61 10 9

95

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -184.14 7 7

96

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -185.11 10 9

97

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -185.37 6 6

98

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -186.72 10 9

99

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -187.19 9 9

100

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -187.47 9 7

101

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -188.84 6 5

102

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -189.60 9 6

Kink-turn

103

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -189.77 8 6

104

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -190.23 12 11

105

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -190.60 10 9

106

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -191.51 9 6

Intercalated tWH

107

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -191.86 13 11

Kink-turn related

108

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -192.77 9 9

Pseudoknot

109

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -193.45 7 5

Isolated non-canonical cWW pair

110

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -195.24 8 6

SSU/LSU pseudoknot

111

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -196.75 8 7

112

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -198.84 11 11

113

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -199.36 7 7

UAA/GAN related

114

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -199.53 8 7

115

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -200.46 9 5

116

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -201.05 8 6

180 degree turn

117

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -205.24 9 7

118

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -206.15 9 7

119

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -206.27 11 8

120

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -206.95 9.5 7.5

121

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -207.31 8 5

Kink-turn from U4

122

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -207.65 9 6

123

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -207.81 7 7

124

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -208.94 10 9

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

125

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -211.68 6 6

126

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -211.74 13 10

127

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -213.52 10 8

128

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -215.06 7 7

129

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -215.75 9 7

tSH-tHS-tHW

130

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -216.08 10 8

131

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -216.21 7 5

132

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -217.91 10 7

133

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -218.44 9 7

Kink-turn

134

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -218.93 10 7

135

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -219.50 13 10

136

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -221.07 12 9.5

137

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -221.84 13 11

138

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -225.91 14 13

Kink-turn

139

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -226.77 11 9

140

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -232.43 11 9

141

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -233.47 9 7

Kink-turn

142

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -235.23 9 8

143

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -235.84 12 8

144

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -236.81 10 6

145

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -239.52 9 5

146

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -242.24 6 6

147

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -242.62 10 9

Part of G-quadruplex

148

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -243.80 11 7

149

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -244.05 7 7

tHW-tHW cross-strand stack

150

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -244.33 9 6

Kink-turn with embedded cWW pair

151

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -244.97 9 7

152

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -245.58 8 7

Kink-turn related

153

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -245.84 7 6

154

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -247.68 10 8

8x6 Sarcin-Ricin with inserted A; G-bulge

155

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -251.98 7 6

156

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -253.73 10 7

157

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -255.49 9 5

158

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -255.98 10 8

159

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -256.73 10 8

160

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -257.38 8 6

Kink-turn

161

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -257.56 9 8

Sarcin-Ricin target in LSU H95; G-bulge

162

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -258.66 15 12

163

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -259.20 8 6

Kink-turn

164

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -259.75 12 10

165

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -259.94 8 5

166

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -261.30 8 5

167

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -262.81 7 5

168

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -263.06 9.5 6

169

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -264.36 11 9

Kink-turn

170

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -264.96 10 6

171

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -265.31 10.5 7

172

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -267.63 5 5

173

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -270.49 9 7

174

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -271.75 6 4

175

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -272.80 10 7

176

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -273.44 10 8

177

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -274.83 10 7

178

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -274.85 11.5 9

Part of G-quadruplex

179

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -275.74 8 5

180

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -276.64 11 9

181

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -278.26 9 8

182

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -279.13 11 8

183

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -279.57 17 14

184

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -280.88 9 6

Receptor of 11-nt loop-receptor motif

185

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -281.05 11 10

186

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -281.41 10 8

187

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -282.12 10 9

188

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -282.26 6 4

189

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -282.94 9 8

190

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -283.60 15 13

191

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -283.76 9 5

tSH-tHW

192

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -284.27 10 9

Kink-turn

193

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -287.68 9 8

194

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -287.99 6 6

195

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -289.09 9 8

UAA/GAN with extra stack

196

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -289.85 6 6

197

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -290.65 14 12

198

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -291.31 7 7

199

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -294.17 11 8

200

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -294.29 7 6

Multiple bulged bases

201

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -294.91 11 7

Kink-turn related

202

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -296.91 9 7

203

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -296.98 10 7

Decoding loop related

204

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -299.34 12 9

Kink-turn

205

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -300.52 8 6

206

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -301.33 17 16

207

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -302.52 13 12

208

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -303.51 9 7

209

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -304.57 15 14

210

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -305.47 9 7

6x5 Sarcin-Ricin; G-bulge

211

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -305.82 10 9

212

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -306.02 9 7

Other IL

213

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -306.20 11 8.5

214

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -306.61 9 7

215

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -307.04 13 11

216

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -307.68 13 11

217

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -308.67 11 8

218

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -311.02 10 8

219

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -311.92 12 9

220

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -314.44 8 7

8x6 Sarcin-Ricin with inserted Y; G-bulge

221

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -316.20 9 5

222

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -318.51 10 8

223

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -321.20 12 11

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

224

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -322.81 11 9

225

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -322.91 8 8

tWH-tWH-tHW-tHW

226

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -323.52 8 8

Triple sheared related

227

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -323.92 8 7

228

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -323.96 10 6

229

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -324.03 11 9

230

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -324.66 11 7

231

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -325.19 7 5

232

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -325.41 9 7

233

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -329.30 9 7

Kink-turn

234

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -329.73 13 12

235

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -331.26 7 5

236

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -332.19 12 11

237

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -336.07 11 7

238

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -337.39 11 8

239

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -341.85 11 10

tSH-tHW-tHH-tHS

240

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -341.95 10 9

8x6 Sarcin-Ricin with bulged A; G-bulge

241

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -343.30 8 8

242

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -345.57 9 7

243

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -346.32 7 5

Isolated non-canonical cWW pair

244

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -346.60 12 11

10x8 Sarcin-Ricin; G-bulge

245

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -348.47 8 7

tSH-tHH-tHS

246

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -348.60 9 8

Double sheared; A in syn; two near cWW pairs

247

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -348.62 10 8

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

248

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -351.41 13 11

249

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -351.52 7 5

250

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -353.52 9 5

251

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -353.69 19 17

252

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -353.88 17 15

253

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -354.77 19 16

254

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -356.42 15 12

255

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -358.91 8 7

256

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -361.99 10 7

257

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -362.14 10 8

UAA/GAN with tHH

258

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -364.47 12 12

Minor groove platform related

259

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -366.73 8 8

260

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -367.40 7 6

261

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -371.64 9 8

AAA cross-strand stack

262

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -373.29 13 10

263

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -374.44 11 8

264

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -378.03 10 8

7x7 Sarcin-Ricin with intercalated A; G-bulge

265

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -378.14 8 6

266

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -378.68 8 8

267

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -380.08 9 6

Bulged stacked bases

268

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -380.80 7 5

269

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -386.81 11 9

270

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -387.75 7 5

271

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -388.42 11 7

272

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -389.34 8 7

cWH basepair and non-canonical AC

273

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -391.16 9 8

tSH-tSH-tHH-tHS

274

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -391.19 5 5

275

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -391.67 10 8

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

276

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -392.33 12 11

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

277

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -394.67 9 6

278

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -395.94 11 10

8x7 Sarcin-Ricin; G-bulge

279

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -398.76 9 7

Multiple bulged bases

280

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -401.41 9 6

Left turn

281

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -402.13 10 10

Other IL

282

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -402.91 10 9

8x7 Sarcin-Ricin; G-bulge

283

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -403.44 9 8

7x6 Sarcin-Ricin; G-bulge

284

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -406.75 10 6

285

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -407.40 13 12

286

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -408.36 10 9

Triple sheared with non-canonical cWW

287

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -409.31 7 5

288

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -415.33 7 6

289

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -415.62 7 7

290

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -418.02 8 6

291

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -421.87 19 18

292

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -423.32 10 10

293

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -424.25 9 6

294

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -427.29 12 9

Kink-turn

295

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -427.32 22 19

296

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -427.98 9 6

Double sheared

297

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -428.64 9 7

tSH-tWH-tHS-cWW

298

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -429.50 8 7

Major groove minor groove platform with intercalation; mini C-loop

299

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -429.68 14 12

300

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -438.06 7 6

301

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -439.29 10 10

302

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -439.69 6 5

Isolated non-canonical cWW pair

303

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -442.50 11 8

tSH-tHW-tWH-tHS

304

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -445.33 8 8

UAA/GAN with extra cWW

305

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -445.49 11 11

306

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -445.81 6 6

307

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -446.40 19 19

308

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -447.06 6 5

309

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -452.96 6 6

310

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -455.00 9 8

311

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -465.96 12 11

312

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -470.69 8 6

Tandem non-canonical cWW pairs

313

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -471.00 10 7

314

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -476.55 9 5

tSH-tHW

315

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -479.84 11 9

316

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -480.99 7 6

317

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -483.20 7 5

Decoding loop related

318

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -485.42 12 12

319

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -487.38 9 6

Major groove platform with intercalated tWH

320

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -490.06 6 6

321

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -493.55 11 10

322

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -493.89 7 6

Major groove intercalation

323

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -495.79 7 6

Minor groove platform, major groove intercalation

324

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -498.58 9 7

325

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -501.14 9 8

UAA/GAN

326

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -502.50 9 7

327

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -503.44 13 11

328

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -507.27 6 5

Isolated non-canonical cWW pair

329

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -510.80 8 6

330

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -511.51 10 8

UAA/GAN

331

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -513.14 14 13

332

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -513.84 9 7

333

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -515.91 7 6

Minor groove platform

334

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -523.59 6 6

335

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -523.61 10 7

336

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -524.58 11 9

Triple sheared

337

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -526.82 11 8

338

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -527.07 9 7

Other IL

339

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -528.06 10 6

340

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -529.96 6 6

Major groove minor groove platform; mini C-loop

341

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -537.44 12 11

Bacterial 5S Loop E

342

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -538.19 7 6

Major groove platform

343

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -541.97 6 6

344

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -543.79 7 6

Double sheared

345

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -544.85 6 6

Isolated non-canonical cWW pair

346

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -546.43 16 15

Kink-turn related

347

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -548.88 7 6

Double sheared with non-canonical cWW

348

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -551.58 10 9

Quadruple sheared

349

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -553.12 9 6

Intercalated cWS

350

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -555.18 7 6

Isolated tWW turn

351

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -575.96 6 6

Isolated cWS basepair

352

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -578.94 8 6

UAA/GAN related

353

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -582.50 7 6

Minor groove platform

354

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -583.61 7 7

355

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -604.56 10 7

Isolated tHS basepair with bulges

356

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -605.81 7 7

357

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -606.73 9 7

Isolated non-canonical cWW contact

358

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -608.40 9 7

UAA/GAN variation

359

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -618.42 7 6

Isolated cWH basepair

360

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -618.57 18 17

361

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -619.95 9 7

5x5 Sarcin-Ricin with intercalated A; G-bulge

362

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -626.76 7 7

Triple non-canonical cWW pairs

363

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -629.84 6 6

Single stack bend

364

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -632.60 8 7

Tandem non-canonical cWW pairs

365

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -633.89 6 6

Tandem non-canonical cWW pairs

366

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -638.47 9 7

tSH-tWH-tHS

367

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -664.60 8 7

368

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -685.26 9 7

Triple sheared

369

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -690.09 9 6

Major groove platform with intercalation

370

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -734.49 8 6

Minor groove platform

371

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -4416.90 19 19

372

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -4422.35 17 17

373

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4550.87 19 18

374

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4690.98 11 9

375

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -5088.48 14 12

376

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -5256.78 10 8

Kink-turn related

377

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5281.07 10 10

378

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -5302.92 9 7

Kink-turn with non-sequential stacking

379

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -5518.73 9 5

380

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -5766.40 10 8

381

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -6151.76 10 7

Receptor of 11-nt loop-receptor motif

382

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -6162.66 8 7

383

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6236.53 8 8

384

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -7018.57 7 6

C-loop with bulged stacked A's

385

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -7036.86 7 7

8-nt loop receptor

386

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -7077.94 6 6

Symmetric double minor groove platform

387

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -8164.42 9 7

Major groove platform

388

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -8257.73 10 6

389

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8630.49 5 5

C-loop

390

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -9359.77 7 5

391

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -9999.00 8 8

Single bulged G

392

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 7 6

C-loop

393

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 7

394

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -9999.00 10 7

395

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 8

396

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 8 7

Single stack bend

397

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 7 7

Isolated non-canonical cWW pair

398

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -9999.00 7 7

Single bulged A

399

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -9999.00 7 6

Stack and bulge

400

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -9999.00 8 6

401

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9999.00 10 7

Multiple bulged bases

402

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -9999.00 6 5

Minor groove platform

403

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9999.00 7 6

Major groove platform; stack outside cWW

404

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 6 6

405

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -9999.00 7 7

Single bulged C

406

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 8

407

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -9999.00 6 6

Multiple bulged bases

408

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 8 6

409

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -9999.00 7 5

410

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -9999.00 6 6

Multiple bulged bases

411

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 7 7

Single bulged U

Coloring options: