RNA 3D Hub

JAR3D Query RF00210-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF00210 maps to these 3 chains: 2NBX|1|A, 8HUJ|1|C, 8J7R|1|C See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 4 Internal loop

Column numbers: 48-50, 65-76 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    CGC*GUCUAGA----G   76

    
    CGC*GUCUUGA----G    7

    
    CAC*GUCUAGA----G    2

    
    UUA*UUGUGGACCUUA    1

    
    CAC*GUCUUGA----G    1

    
    CCA*UUGCCGU----G    1

    
    CGC*GUCUAGU----G    1

    
    CGC*GUCUGGA----G    1

    
    CGC*GCCCACA-----    1

    
    Omitted sequenced and counts

    
    --C*AUCUUGC----C    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

95.60 2.62 8 4

2

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

87.91 12.73 7 3

3

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

7.69 -24.09 5 4

4

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

1.10 -13.96 5 3

5

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

1.10 -45.78 8 6

Reverse kink-turn related

6

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -16.16 3 3

7

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -18.36 7 4

Vitamin B12 Aptamer

8

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -23.16 8 4

9

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -34.73 7 5

10

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -40.91 7 6

11

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -41.48 6 5

12

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -42.66 6 5

13

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -44.06 8 5

cWH basepair with bulged bases

14

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -44.36 7 5

15

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -46.41 5 4

16

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -48.56 8 6

Kink-turn related

17

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -53.97 7 4

18

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -54.46 7 5

19

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -55.96 5 4

20

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -58.58 5 5

Minor groove platform

21

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -60.40 7 5

22

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -61.21 9 7

23

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -64.14 8 4

24

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -67.35 7 4

25

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -68.81 9 5

26

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -69.88 7 5

27

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -74.67 9 6

28

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -78.70 8 5

29

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -79.26 9 6

30

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -81.34 8 6

31

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -84.27 9 6

32

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -84.38 5 3

Intercalated tWH

33

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -84.96 5 3

34

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -88.53 9 5

Reverse kink-turn related

35

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -93.05 9 6

36

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -96.25 7 6

37

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -96.80 7 5

38

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -99.53 7 4

39

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -101.05 8 6

40

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -101.08 10 7

41

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -102.05 9 6

Reverse turn

42

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -103.27 7 6

43

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -103.89 7 4

Pseudoknot

44

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -103.93 9 7

45

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -106.06 8 4

Isolated non-canonical cWW pair

46

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -106.35 7 5

47

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -106.53 8 6

48

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -107.11 9 7

49

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -108.90 7 7

50

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -109.24 9 6

51

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -109.73 8 4

52

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -109.91 9 7

53

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -111.40 6 4

54

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -111.59 6 5

Major groove intercalation

55

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -111.68 6 4

SSU/LSU pseudoknot

56

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -113.45 8 5

57

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -113.71 6 4

58

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -114.03 5 3

59

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -115.00 6 4

60

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -116.39 8 4

Reverse kink-turn

61

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -116.54 8 6

62

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -117.55 10 6

63

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -118.68 7 5

Kink-turn

64

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -119.13 8 8

65

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -119.75 9 7

66

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -122.56 8 5

67

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -123.81 6 2

68

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -125.60 7 6

69

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -126.33 8 7

70

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -127.54 7 4

71

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -127.56 7 6

72

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -127.74 9 7

73

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -127.86 8 6

74

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -128.00 8 6

75

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -128.14 9 7

76

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -128.41 9 6

Kink-turn

77

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -132.06 7 5

78

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -132.23 9 7

79

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -133.48 6 6

80

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -134.44 8 7

81

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -135.64 9 6

82

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -137.55 12 8

83

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -140.62 7 5

84

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -141.25 8 5

85

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -142.54 10 6

86

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -144.75 6 4

87

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -145.57 7 5

88

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -146.75 10 9

89

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -147.17 8 5

90

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -149.20 5 4

91

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -149.49 8 6

92

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -149.54 6 6

tSH-tHS-tHW

93

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -149.92 7 5

94

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -153.82 6 5

Kink-turn

95

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -155.91 6 4

96

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -157.09 7 4

97

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -157.22 6 5

Major groove intercalation

98

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -157.78 8 6

UAA/GAN related

99

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -157.93 6 5

100

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -159.25 6 6

101

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -159.49 9 7

Pseudoknot

102

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -159.72 9 7

103

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -159.89 9 6

180 degree turn

104

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -160.15 8 6

105

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -161.22 6 5

106

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -161.69 8 6

107

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -163.10 7 5

108

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -163.27 10 9

109

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -163.79 8 5

Kink-turn related

110

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -164.04 6 5

Kink-turn

111

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -164.12 11 8

112

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -165.39 9 8

113

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -165.74 7 7

114

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -165.75 5 4

115

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -165.87 11 7

tSH-tHW

116

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -168.42 9 9

117

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -169.26 12 10

118

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -171.00 9 8

119

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -171.62 8 7

120

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -172.08 7 5

121

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -174.32 7 7

122

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -174.43 11 9

123

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -174.69 7 5

124

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -175.83 10 6

8x6 Sarcin-Ricin with inserted A; G-bulge

125

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -175.93 8 8

126

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -176.77 6 4

127

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -179.45 8 7

128

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -180.39 10 7

129

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -184.26 11 10

130

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -184.72 7 4

131

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -186.69 7 5

132

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -187.58 11 7

Kink-turn

133

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -187.93 8 7

134

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -190.00 8 6

Sarcin-Ricin target in LSU H95; G-bulge

135

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -191.23 9 5

136

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -192.74 9 8

137

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -193.13 14 11

Kink-turn related

138

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -193.15 8 6

tHW-tHW cross-strand stack

139

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -193.46 6 4

Kink-turn from U4

140

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -197.43 6 5

141

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -198.64 9 6

142

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -201.49 14 11

143

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -201.88 10 9

144

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -203.53 7 5

145

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -204.63 6 5

Decoding loop related

146

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -204.87 12 10

147

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -208.81 11 10

148

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -209.11 6 6

149

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -209.71 14 13

150

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -209.96 10 9

151

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -210.27 11 10

152

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -210.60 10 6

153

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -212.24 5 3

154

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -212.72 8 7

155

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -214.42 4 4

156

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -214.60 7 5

157

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -215.31 6 6

158

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -217.62 12 10

159

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -220.37 14 12

Pseudoknot

160

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -221.34 6 4

161

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -224.15 7 5

Kink-turn

162

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -225.76 5 4

163

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -227.14 12 9

164

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -227.64 4 3

165

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -228.64 10 8

166

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -228.84 8 5

167

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -228.84 7 6

168

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -230.54 10 8

Kink-turn related

169

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -230.62 9 7

UAA/GAN with extra stack

170

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -230.81 8 8

171

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -232.52 9 7

172

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -232.86 7 6

173

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -233.29 6 5

tSH-tHW

174

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -233.34 16 13

Kink-turn

175

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -233.51 6 5

176

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -235.42 6 6

177

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -236.52 12 10

Pseudoknot

178

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -236.73 8 4

Kink-turn

179

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -237.88 14 12

180

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -240.10 7 5

Kink-turn

181

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -240.13 8 5

Triple sheared related

182

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -242.75 6 3

183

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -243.42 6 5

184

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -244.25 7 6

185

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -244.29 7 5

186

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -244.45 6 5

AAA cross-strand stack

187

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -245.12 7 5

Major groove minor groove platform with intercalation; mini C-loop

188

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -245.13 12 9

189

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -245.28 7 6

190

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -245.78 8 6

Kink-turn with embedded cWW pair

191

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -246.34 10 9

192

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -246.94 9 7

193

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -250.41 4 4

194

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -252.81 7 4

195

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -254.08 12 12

196

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -254.09 7 5

197

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -255.05 6 5

198

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -256.97 6 4

Multiple bulged bases

199

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -257.28 8 6

6x5 Sarcin-Ricin; G-bulge

200

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -257.44 6 5

201

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -258.11 10 9

202

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -259.61 10 6

203

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -259.64 11 8

204

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -260.80 10 7

Kink-turn

205

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -261.16 4 4

206

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -262.00 8 6

207

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -262.69 7 7

Part of G-quadruplex

208

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -263.28 11 7

Kink-turn

209

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -266.54 10 8

210

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -266.56 8 8

211

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -267.31 13 11

212

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -268.69 7 5

Double sheared; A in syn; two near cWW pairs

213

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -269.45 15 13

214

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -272.03 10 8

215

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -272.68 6 5

216

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -273.78 9 7

217

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -274.65 7 7

218

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -277.96 8 7

Other IL

219

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -280.84 7 7

8x6 Sarcin-Ricin with bulged A; G-bulge

220

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -281.91 11 9

10x8 Sarcin-Ricin; G-bulge

221

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -282.31 11 8

222

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -283.30 13 11

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

223

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -284.33 8 5

Kink-turn

224

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -285.61 9 7

225

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -287.09 6 5

226

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -287.12 7 6

Kink-turn related

227

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -288.13 10 8

228

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -289.45 16 13

229

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -290.91 5 5

230

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -291.35 8 4

Multiple bulged bases

231

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -291.61 9 8

tSH-tHW-tHH-tHS

232

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -291.71 8 5

Bulged stacked bases

233

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -293.75 6 5

234

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -295.95 9 7

235

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -296.46 7 5

Receptor of 11-nt loop-receptor motif

236

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -298.33 6 5

237

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -301.84 6 5

Left turn

238

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -302.45 7 7

239

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -304.63 6 5

240

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -305.03 8 5

241

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -305.92 15 11

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

242

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -306.18 15 13

243

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -307.99 8 8

244

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -308.11 9 8

8x6 Sarcin-Ricin with inserted Y; G-bulge

245

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -308.53 6 5

246

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -308.96 6 4

247

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -309.32 11 9

248

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -314.25 6 5

249

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -319.17 9 6

250

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -319.38 5 4

251

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -323.75 14 12

252

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -326.35 7 5

253

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -328.31 17 16

254

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -328.62 6 5

255

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -328.90 8 7

tWH-tWH-tHW-tHW

256

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -331.87 5 5

tSH-tHH-tHS

257

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -335.66 6 6

8x7 Sarcin-Ricin; G-bulge

258

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -339.30 8 8

Triple sheared with non-canonical cWW

259

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -340.64 16 15

260

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -340.74 11 8

7x7 Sarcin-Ricin with intercalated A; G-bulge

261

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -341.18 9 6

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

262

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -341.79 10 8

Minor groove platform related

263

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -342.88 5 5

264

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -343.62 10 9

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

265

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -343.67 6 5

266

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -345.66 11 9

267

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -346.39 6 5

UAA/GAN with extra cWW

268

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -346.93 6 4

UAA/GAN

269

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -349.97 16 16

270

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -351.25 8 6

271

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -354.10 9 9

272

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -355.62 8 7

UAA/GAN with tHH

273

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -357.20 7 4

Isolated non-canonical cWW pair

274

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -361.96 6 6

tSH-tSH-tHH-tHS

275

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -364.26 10 6

276

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -366.22 8 6

8x7 Sarcin-Ricin; G-bulge

277

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -368.50 10 7

278

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -369.17 9 7

279

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -370.64 13 11

280

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -370.96 9 7

Other IL

281

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -373.73 6 4

282

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -373.86 9 7

283

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -375.70 5 4

284

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -376.67 7 5

Receptor of 11-nt loop-receptor motif

285

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -378.16 6 5

UAA/GAN

286

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -378.30 8 5

287

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -380.72 8 6

288

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -382.29 6 6

7x6 Sarcin-Ricin; G-bulge

289

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -383.53 13 11

290

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -390.09 8 6

8-nt loop receptor

291

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -394.83 20 18

292

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -399.70 19 18

293

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -401.17 8 5

294

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -410.49 9 8

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

295

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -412.08 18 17

296

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -414.33 10 7

Kink-turn

297

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -415.95 4 4

Isolated non-canonical cWW pair

298

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -419.82 7 6

cWH basepair and non-canonical AC

299

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -419.83 9 7

300

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -421.74 8 5

301

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -426.27 8 5

tSH-tWH-tHS-cWW

302

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -427.77 19 18

303

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -434.00 6 5

Major groove platform with intercalated tWH

304

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -435.36 5 5

305

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -436.02 5 5

306

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -436.10 8 5

Tandem non-canonical cWW pairs

307

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -441.78 4 4

Isolated non-canonical cWW pair

308

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -446.21 11 8

309

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -446.47 11 10

310

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -447.18 5 5

311

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -448.03 6 5

312

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -448.51 5 5

313

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -452.62 6 5

314

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -456.61 7 7

tSH-tHW-tWH-tHS

315

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -457.03 7 5

316

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -457.92 6 5

UAA/GAN related

317

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -458.63 7 5

Double sheared

318

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -460.37 5 4

Major groove intercalation

319

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -462.34 13 11

320

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -466.20 8 5

321

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -471.01 5 5

322

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -472.19 4 4

Isolated non-canonical cWW contact

323

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -472.41 10 8

324

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -473.72 9 8

325

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -474.30 7 5

326

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -476.46 6 5

UAA/GAN variation

327

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -476.91 5 4

Minor groove platform

328

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -478.63 6 5

329

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -480.17 6 5

Intercalated cWS

330

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -481.70 21 21

331

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -482.96 7 5

Isolated tWW turn

332

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -485.33 7 6

Triple sheared

333

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -486.70 9 9

334

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -487.42 6 5

335

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -488.29 6 6

336

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -490.92 8 6

337

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -491.79 5 4

Decoding loop related

338

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -492.54 7 6

339

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -498.09 7 5

340

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -502.05 7 6

tSH-tHW

341

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -502.40 7 5

Minor groove platform

342

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -502.67 7 6

343

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -512.03 5 5

Stack and bulge

344

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -512.28 6 5

345

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -517.65 14 11

346

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -525.15 7 5

347

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -531.11 6 5

348

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -531.81 8 7

Other IL

349

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -532.46 15 15

Kink-turn related

350

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -533.71 5 5

Isolated cWS basepair

351

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -535.25 5 4

Minor groove platform, major groove intercalation

352

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -536.18 5 5

Major groove minor groove platform; mini C-loop

353

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -539.06 9 7

Quadruple sheared

354

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -539.13 6 5

Isolated non-canonical cWW pair

355

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -540.98 12 10

Bacterial 5S Loop E

356

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -544.38 7 5

357

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -546.98 5 5

Isolated cWH basepair

358

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -548.94 5 4

359

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -556.35 6 4

Tandem non-canonical cWW pairs

360

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -559.49 6 6

Major groove platform

361

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -562.71 7 6

Double sheared with non-canonical cWW

362

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -565.31 7 6

Isolated tHS basepair with bulges

363

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -567.80 5 5

Major groove platform with intercalation

364

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -571.09 5 5

365

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -573.08 5 5

Multiple bulged bases

366

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -586.93 5 5

Double sheared

367

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -588.75 18 17

368

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -595.81 6 5

Single stack bend

369

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -600.90 7 6

Triple non-canonical cWW pairs

370

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -605.58 6 5

Major groove platform

371

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -612.36 7 6

372

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -615.99 7 6

tSH-tWH-tHS

373

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -616.88 6 6

Tandem non-canonical cWW pairs

374

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -626.58 7 6

5x5 Sarcin-Ricin with intercalated A; G-bulge

375

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -628.19 6 5

Minor groove platform

376

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -673.01 8 6

Minor groove platform

377

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -678.81 6 6

Triple sheared

378

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -681.53 6 6

Isolated non-canonical cWW pair

379

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -726.09 6 6

Single bulged U

380

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -736.87 6 6

381

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -741.21 6 6

Single stack bend

382

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -769.23 6 6

Single bulged C

383

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -771.86 6 6

Single bulged G

384

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -789.63 6 6

Single bulged A

385

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -4270.81 12 11

386

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -4271.71 13 10

387

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4517.23 16 15

388

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4763.01 15 15

389

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -5034.77 9 8

390

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -5102.01 11 8

Part of G-quadruplex

391

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -5192.26 11 8

Kink-turn related

392

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5212.14 10 9

393

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5261.57 10 7

394

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5263.66 11 7

395

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -5315.00 9 8

Kink-turn with non-sequential stacking

396

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -5519.93 7 5

397

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -6192.80 12 8

398

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6251.17 10 9

399

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -7013.28 10 7

Symmetric double minor groove platform

400

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -7043.45 9 7

C-loop with bulged stacked A's

401

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -8201.49 9 6

402

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8628.95 5 3

C-loop

403

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 6 4

C-loop

404

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 6 6

405

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9999.00 6 6

Multiple bulged bases

406

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9999.00 7 5

Major groove platform; stack outside cWW

407

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 7 6

408

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 7 6

409

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -9999.00 5 5

Multiple bulged bases

410

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 4 4

411

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -9999.00 7 5

Coloring options: