JAR3D on RF00210

RF00210 Aphthovirus internal ribosome entry site (IRES)

Input Summary

      00000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333344444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444445555555555555555555555555555555555555555555555555555555555555555555555
00000000011111111112222222222333333333344444444445555555555666666666677777777778888888888999999999900000000001111111111222222222233333333334444444444555555555566666666667777777777888888888899999999990000000000111111111122222222223333333333444444444455555555556666666666777777777788888888889999999999000000000011111111112222222222333333333344444444445555555555666666666677777777778888888888999999999900000000001111111111222222222233333333334444444444555555555566666666667777777777888888888899999999990000000000111111111122222222223333333333444444444455555555556666666666
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
..............................((((((.((((..(((((((((((.....).))))).........)))))..)))))).)))).(((((...((((((((....(((((((((((((.....(((((....(.....((((((((((((((......((((((((((((.((.((((((......((((((....)))))))))))).(((.....)))..((((.....))))))))))))))........)))).......)))))))))))))).....)..)).)))......)))).)......................)))))))).......................))).))))).))))).............(((........((((((((((......((((((((.........)).).))))).......)))))(((.(((.((((...((......))...)).)))))))).....)))))......)))((((((((.(((......)))))))))))......................
>L02971.1_237-705
ACCUGUAUUAUGUACAGGGU-GGCAGAUG-GCGUGC-CAUAAAUCUAUUAGUGGGAUACCACGCUUGUGGACCUUAUGCCCACACAGCCAUCCUCUAGUAAGUUUGUAAA----AUGUCUGGUGAGA--UGUGGGAACUUAUUGGAAACAA----CAAUUUGCU-UAAUAGCAUCCUAG-UGCCAGCGGAACAAC-AUCUGGUAACAGAUGCCUCUGGGGCCAAAAGCCAAGGUUUGACAGACCCAUUAGGAUUGGU----UUCAAA--ACCUGAAUUG----UUGUGGAAGAUAUU-CAGUAC--CUAUCAA----------------------UCUGGUAG-----------------------UGGUGCAAACACUAGU-------UGUAAGGCCCACGAAGGAUGCCCAGAAGGUACCCGCAGGUAACAAG-AGACAC-UGUGGAUCU-GAUCUGGGGC-CAA-CUAC---CUCUAUCAG----GUGAGUUAGUUAAAAAACGUCUAGUGGGCCAAACCCAGGGG---GG-AUCCCUGGUUUC-CUUU-UAU-UGUUAAUAUUGA
>AF055846.1_245-695
UGGCA-----GAUGGCGUGC-CAUAACUC-UACUAG-UGGGAUACCACGCUUGUGGACCU-UAUGCCCACA-----CAGCCAUCCUCU-AGUAAGUUUG---UAAGACGU----CUGAUGACGUGUG--GGAAAACA----CUAGAAAUAUUAAC----UUGCUGUAAAGCAUCCUACU-G-CCAGCGGAAUCAC-AUCUGGUAACAGAUGCCUCUGGGGCCAAAAGCCAAGGUUUAGC-AGACCCUUUAGGAUUGG---UUCAAUA--CCUGAG-----UUAAUAUGGAAAG--UGCUUAGUA---CCUGCU----------------------GACUUGGU-----------------------A-GUAGU-G-CAAACACUAGUUGUAUGGCCCGC--GAAGGAUGCCCAGAAGGUACCCGUAGGUAACAAG-UGACAC-UAUGGAUCU-GAUCUGGGGC-UGG-AUAC---CUCUAUCUUG---GUGAUCCAGUUAAAAAACGUCUA--GCGGGCCAAGCCCAGGGGGGA-UCCCUGGUUUCC-CUAU-UUU-UAUUAUUAUCAC
>AY593795.1_630-1091
ACGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAGCUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUG----UUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUAGU-GGCCGUGGGAAUCCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCUAAC-GGACCCACUAUGUGUGC---AACCCCA--GCACGGCAACUUUUCUGCGAAACC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCG-AACACU-------GGUGACAGGC--UAAGGAUGCCCUCCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGGAGGGGA-CUG-GGGC---UUCUAUAAAA---GUGCCCAGUUUAAAAAGCUUCUAC-GCCUGAGUAGGCGACCGGAGG-CCGGCGCCUUUC-UUUU-AAU-UACCACUGUUUU
>AY686687.1_621-1083
AAGCAAGUUUCCACAACUGA-GAAAACUC-GUGCAA-CUUGGAACCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GCACGGUGCU---CGACUCCA----CGCCCGGUCCACU--GGCGGGUG----UUAGUAGCAGCACUGUUGUUUCG-UAGCGGAGCAUGGU-GGCCGUGGGAACUCCCCCUUGGAGACAAGGACCCGCGGGGCCAAAAGCCACGUCCGGAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGCGAACGC--CA-CCUUAA---GGUGAC----------------------ACUGGUAC-----------------------UGGUACUCG-GUCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-GGACAC-UCGGGAUCU-GAGAAGGGGAUUUG-GGAC---UUCUCUAAAA---GUGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUC-UACU-ACC-CACUACUAAAUC
>AF026168.2_206-666
AAGCAGGUUUCCACAACUGA-UAAAACUC-GUGCAA-CUUGAAACCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGCU---CGACUCCA----CGCCCGGUCCACU--GGCGGGUG----UUAGUAGCAGCACUGUUGUUUCG-UAGCGGAGCAUGGU-GGCCGUGGGAACUCCUCCUUGGUGACAAGGGCCCACGGGGCCGAAAGCCACGUCCAAAC-GGACCCAACAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGCGAACAC--CA-CCUUAA---GGUGAC----------------------ACUGGUAC-----------------------UGGUACUCG-GUCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-GGACAC-UCGGGAUCU-GAGAAGGGGA-UUG-GGAC---UUCUUUAAA----GUGCCCAGUUUAAAAAGCUUCUAC-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUC-CAUU-ACC-CACUACUAAAUC
>AY317098.1_580-1041
AAGCAGGUUUCCACAACUGA-UAAAACUC-GUGCAU-UUUGAAACCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGCU---CGACUCCA----CGCUCGGUCCACU--GGCGGGUG----UUAGUAGCAGCACUGUUGCUUCG-UAGCGGAGCAUGGU-GGCCGUGGGAACUCCUCCUUGGUGACAAGGACCCACGGGGCCAAAAGCCACGUCCAGAU-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACCUUACUGCGAACAC--CA-CCUUAA---CGUGAC----------------------ACUGAUAC-----------------------UGGUACUCG-GUCACU-------GGUGACAGAC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-GGACAC-UCGGGAUCU-GAGAAGGGGA-UUG-GGAC---UUCUUUAAAA---GUGUCCAAUUUAAAAAGCUUCUAU-GUCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUC-CAUU-ACC-UACUACUAAAUC
>AY390432.1_620-1077
AUGCAGGUUUCCACAACUGA-CACAAAUC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAUUUU-GUACUGUGCU---CGACUCCA----CGCUCGGUCCACU--AGCGGGUG----UUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGGU-GGCCGCGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCUAAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGCGAAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCG-ACCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAUG-UGACAC-UCGGGAUCU-GA--GGGGGA-CUG-GGAC---UUCUUUAAAA---GUGCCCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUC---AU-GAA-CACAACUGAUUG
>AY593791.1_697-1157
AAGCAGGUCUCCACAACUGA-CACAAACC-GUGCAA-CUUGGAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--AGCGGGUG----UGAGUAGCAGAACUGUCGCUUCG-UAGCGGAGCAUGGU-GGCCGCGGGAACCCCUCCUUGGUAACAAGGACCCGCGGGGCCGAAAGCCACGUCUUA-U-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAAUUUUUCUGUGAAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AUCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGAC---UUCUUUAAAA---GUGCCUAGUUUAAAAAGCUUCUAC-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUC-UUUC-AAA-CACUACUAGACU
>AY687333.1_618-1079
AUGCAGGUUUCCACAACUGA-CACACACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACACUUU-GUACUGUGAU---UGACUCCA----CGCUCGGUCCACU--GGCGGGUG----CGAGUAACAGGACUGUUGUUUCG-UAGCGGAGCAUGAU-GGCCGUGGGAUCCCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUAAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGUGAAAAA--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-ACCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-UUG-GGGC---UUCUUUAAAA---GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUC-UUUU-AAC-CACUACUCAACU
>AY312589.1_250-712
AUUCAGGUCCCCACAACCGA-CACAAAUC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAUUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUG----CUAGUAACAGCACUGCUGCUUCG-UAGCGGAGCAUGGU-GGCCGCGGGAAUUCCUCCUUGGUAACAGGGACCCGCGGGGCCGAAAGCCACGUCCUCAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGUGAAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AUCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCUGAGGUAACACG-CGACAC-UCGGGAUCUUGAGAAGGGGA-CUG-GGGC---UUCUUUAAAA---GCGCCUAGUUUAAAAAGCUUCUAC-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-UUUU-AAA-CAACUAUUUUUA
>AY593831.1_632-1091
ACUCAGGUUCCCACAACCGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGGCAUUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUG----CUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGGU-GGCCGCGGGAACUCCUCCUUGGUAACAGGGACCCGCGGGGCCAAAAGCCACGUCCUCAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGUGAAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-ACCACU-------GGUGACAGGC--UAAGGAUGCCCUUUAGGUACCCUGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUUUAAAA---GCGCUUAGUUUAAAAAGCUUCUAC-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC---UU-UUA-AACAACUACUUU
>AY312587.1_249-708
AUUCAGGUUCCCACAACCGA-CACAAACC-GUGCAA-CCUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAUUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUG----CUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGGU-GGCCGCGGGAACUCCUCCUUGGUAACAGGGACCCGCGGGGCCGAAAGCCACGUCCUCAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGUGGAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-ACCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCUGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUUUAAAA---GCGCCUAGUUUAAAAAGCUUCUAC-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC---UU-UUA-AACAACUACUUU
>AF377945.1_251-710
AUUCAGGUUCCCACAACCGA-CACAAACC-GUACAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAUUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUG----CUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGGU-GGCCGCGGGAACUCCUCCUUGGUAACAGGGACCCGCGGGGCCGAAAGCCACGUCCUUAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAGCUUUACUGUGAAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-ACCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCUGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUUUAAAA---GCGCCUAGUUUAAAAAGCUUCUAC-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC---UU-UUA-AACAACUACUUU
>Y17974.1_205-665
AUGCAGGUUUCCACGACUGA-CACAAACC-GUGCAA-CUUGAAGCUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAUUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--UGCGGGUG----UUAGUAACAGCACUGAUGCUUCG-UAGCGGAGCAUGGU-GGCCGCGGGAACUCCUCCUUGGUAACGAGGACCCGCGGGGCCGAAAGCCACGUCCUUAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGUGAAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-ACCACU-------GGCGACAGGC--UCCGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUUUAAAA---GUGCCCAGUUUAAAAAGCUUCUAC-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-C-UU-UUG-AACUACUACUUC
>AY593799.1_634-1096
ACGCAGGUCUCCACAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--AGCGAGUG----UUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGGU-GGCCGUGGGAACCCCUCCUUGGCGACAAGGACCCACGGGGCCGAAAGCCACGUCCUUGU-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAGCUCUACUGUGAAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-GACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-AGAC---UUCUUUAAAA---GUGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUCUCCUU-AAC-UACCACUUCUUA
>AY593766.1_632-1093
ACGCAGGUCUCCACAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--AGCGAGUG----UUAGUAGUUGUAUUGUUGCUUCG-UAGCGGAGCAUGGU-GGCCGUGGGAACCCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUGAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACCUUACGGCGAAAAC--CA-CUUUAA---AGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAUG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGAC---UUCUUUAAAA---GUGCCCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUU-CACU-AAC-UGCCACUAUUUU
>AY593811.1_633-1094
ACGCAGGUCUCCACAACUGA-CACAAACC-GUGCAA-UUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAUUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUG----CUAGUAGUAGCACUGUUGCUUCG-UAGCGGAGCAUGGU-GGCCGUGGGAACCCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUUAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGCGAAAAC--CA-CUUCAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-ACCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-UUG-GGAC---UUCUUUAAAA---GUGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUU-CACA-AAC-UACUACUGUUUU
>AY687334.1_618-1079
ACGUAGGUUUCCACAACUGA-CACAAACC-GUGCAA-UUUGAAGCUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--AGCGAGUG----UUAGUAGCAACACUGUUGUUUCG-UAGCGGAGCAUGAU-GGCCGUGGGAACUCCCCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUAAC-GGACCCAUCAUGUGUGC---AACCCCG--GCACGGCAACUUUGUUGUGAAAGC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACCCA-ACCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACACCCAAGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGAC---UUCUGUAAAA---GUGCCCAGUUUAAAAAGCUUCUAU-GCCUGGAUAGGCGACCGGAGG-CCGGCGCCUUUC-CUUU-ACC-UAUUACUGUUUU
>AY593772.1_588-1049
ACGCAGGUUCCCGCAACUGA-CACGAACC-GUGCGA-CUUGAAGCUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACAUUUU-GUACUGUGUU---UGACUCCA----CGCUUGGUCCACU--AGCGAGUG----UUAGUAACAGCACUGUUGCUUCG-UCGCGGAGCAUGAU-GGCUGUGGGAACUCCCCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUCAC-GGACCCAUCAUGUGUGC---AACCCCA--GCACAGCAACUUUACUGUGAAAGC--CA-CUUUAA---GGUGUC----------------------ACUGAUAC-----------------------UGGUACUCA-ACCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAUG-CGACAC-UCGGGAUCU-GAGAAGGGGG-CUG-AGGC---UUCUUUAAAA---GUGCUCAGCUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUC-CACU-UAC-CAAUACUGUUUU
>AY593765.1_631-1092
ACGCAGGUUCCCACAACUGA-CACGAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACACUUU-GUACUGUGUU---UGACUCCA----CGCUUGGUCCACU--AGCGAGUG----UUAGUAACAGCACUGUUGCUUCG-UCGCGGAGCAUGAU-GGCUGUGGGAACUCCCCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUCAC-GGACCCAUCAUGUGUGC---AACCCCA--GCACAGCAACUUUACUGCGAAAGC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-ACCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAUG-CGACAC-UCGGGAUCU-GAGAAGGGGG-CUG-AGGC---UUCUUUAAAA---GCGCUCAGCUUAAAAAGCUUCUAU-GCCUGAACAGGCGACCGGAGG-CCGGCGCCUUUC-CACU-UAC-CAAUACUGUUUU
>AY593763.1_633-1094
ACGCAGGUUUCCACAACUGA-CACGAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACACUUU-GUACUGUGCU---UGACUCCA----CGCUUGGUCCACU--AGCGAGUG----UUAGUAGCAGCACUGUUGCUUCG-UCGCGGAGCAUGAU-GGCUGUGGGAACUCCCCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCUCAC-GGACCCAUCAUGUGUGC---AACCCCA--GCACAGCAACUUUACUGCGAAAGC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-ACCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAUG-UGACAC-UCGGGAUCU-GAGAAGGGGG-CUG-AGGC---UUCUUUAAAA---GCGCUCAGCUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUC-CACU-UAC-CAACACUGUUUU
>AY593834.1_631-1092
AUGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUCGGAACUCCACCUGGUCUUUC-CAGGUCUAGA----GGGGUGACGUUUU-GUACUGUGCU---UGACUCCA----CGCUUGGCCCACU--AGCGAGUG----UUAGUAGUAGCACUGUUGCUUCG-UAACGGAGCGUGAU-GGCCGUGGGAACUCCCCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUAAC-GGACCCAUCAUGUGUGC---AACCCCA--GCACGGCAACUUUGCUGCGAAAAC--CA-CUUUAA---GGUGAC----------------------GCUGACAC-----------------------UGGUACUCA-AUCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGAC---UUCUUUAAAA---GUGUCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUC-CCUA-AUU-ACUGCCAUUUUU
>AY593823.1_635-1097
AUGCAGGUUUCCACAACUGA-CACAAACC-GUGCAA-CUUGAAACCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGCGACAUUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--AGCGAGUG----UUAGUAGUAGCACUGUUGCUUCG-UAGCGGAGCAUGAU-GGCCGUGGGAGCUCCCCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCUACC-GGACCCAUCAUGUGUGC---AAACCCA--GCACGGCAACUUUACUGCGAAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AUCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUUUAAAA---GUGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUU-CACUGUUU-UACUACUGUUUU
>AY359854.1_546-1007
AUGCAGGUUUCCACAACUGA-CACAAACC-GUGCAA-UCUGGAACUUCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAUUUU-GUACUGUGAU---UGACUCCA----CGCUCGGUCCACU--AGCGAGUG----UUAGUAGUAGCACUGUUGCUUCG-UAGCGGAGCAUGGU-GGCCGUGGGAACCCCACCCUGGUAACAGGGACCCACGGGGCCGAAAGCCACGUCCUAAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGCGAAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-ACCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCUCGAGGUAACACG-CGACAC-UCGAGAUCU-GAGAAGGUGA-CUG-GGGC---UUCUUUAAAA---GCCCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUC-CAUU-UAC-UACUACUGUUUU
>AY593797.1_631-1092
AUGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGUCAUACU-GUACUGUGCU---UGACUCCA----CACUCGGUCCACU--AGCGAGUG----UUAGUAGUAGCACUGUUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACCCCUCCUUGGUAACAAGGACCCGCGGGGCCGAAAGCCACGUCCUGGC-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUAUGAAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGAAAC-UCGGGAUCU-GAGAAGGGGA-CCG-GGAC---UUCUAUAAAA---GUGCCCAGUUUAAAAAACUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUC-CUUU-AAU-UACCACUGUUUA
>AY593796.1_634-1095
AUGCAGGUUUCCCCAACUGA-CACAAAAC-GUGCAA-CUUGAAACCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAUCUU-GUACUGUGUU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUG----UCAGUAAUAGCACUGUUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACCCCUCCUUGGUAACAAGGACCCGCGGGGCCGAAAGCCACGUCCUAGC-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUAUGAAAAC--CA-CUUCAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGAAAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGAC---UUCUAUAAAA---GUGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUC-CUUU-AAC-UACUACUUUUAC
>AY593828.1_589-1050
AUGCAGGUAUCCCCAACUGA-CACAAACC-GUGCAA-CUUGGAGCCCCGCCUGGUCUUUC-CAGGUCUAGU----GGGGCGACACUUU-GUACUGUGUU---UGACUCCA----CGCUCGGUCCACU--AGCGAGUG----UUAGUAGUAGUGUUGUUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACCCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUGUC-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGCAGCUUCAUUAUGAAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUAUAAAA---GCACCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGCGACCGGAGG-CCGGCGCCUUUU-CACU-AAU-UACCACUAUUUU
>AY304994.1_590-1051
AUGCAGGUAGCCCCAACUGA-CACAAACC-GUGCAA-CUUGGAACCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACCUU-GUACUGUGUU---UGACUCCA----CGCUCGGUCCACU--AGCGAGUG----UUAGUAGUAGUACUGUUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAAUCCCUCCUUGGCAACAAGGACCCACGGGGCCGAAAGCCACGUCCUGAA-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGCAGCUUUAUUAUGAAACC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUAUAAAA---GUGCCCAGUUUAAAAAGCUUCUAU-GCCUGGAUAGGCGACCGGAGG-CCGGCGCCUUUC-CUUU-GAC-CACUACUGUUUA
>AY593755.1_626-1086
AUGCAGGUUUCCCCAACUGA-CAUAAACC-GUGCAA-CUUGAAGCUCCACCUGGUCUUUC-CAGGUCUAGA----GGAGUGACAUUUU-GUACUGUGUU---UGACUCCA----CGCUCGGUCCACU--GGCGGGUG----UUAGUAGUAGCACUGUUGUCUCG-UAGCGGAGCAUGAU-GGCCGUGGGAACCCCUCCUUGGUAACAAGGACCCGCGGGGCCGAAAGCCACGUCCGAAC-GGACCCAUCAUGUGUGC---AACCCCA--GCACGACAACUUUACUGCGGAAAC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-UACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---CUCUUUAAG----GCGCCUGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CUUU-AAC-CAAAACUGUUUU
>AY593825.1_591-1050
ACGCAGGUCUCC-CAACUGA-CACAAACC-GUGCAG-UUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAAUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUA----UCAGUAACAGCACUGAUGCUUCG-UAGCGGAGCAUGGC-GGCCGUGGGAACCCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUAAC-GGACCCGUCAUGUGUGC---AACCCCG--GCACGGCAGCUUUUCUGUGAAACU--CA-CUUUAA---CGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AACACU-------GGAGACAGGC--UAAGGAUGUCCUUCAGGUACCCCGGGGUAACACG-CGACAC-CCGAGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUAUAAAA---GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-C-UU-UAC-AACCACUGAUUU
>M10975.1_159-619
AAGCAGGCCUCCCCAACUGA-CACAAACC-GUGCAA-UUUGGAACUCCGCCUGGUCUUUC-CUGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGGCUCCA----CGCUCGGUCCACU--GGCGAGUG----UUAGUAACAGCACCGUUGCUUCG-UAGCGGAGCAUGAU-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCAAUC-GGACCCAUCAUGUGUGC---AACCCCA--GCACAGCAACUUUUCUGCGAAACU--CA-CUUCAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGUCAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUAUAAAA---GCGUCCAGGUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-C-UU-UAC-AGCCACUGACUU
>AY593810.1_557-1017
AAGCAGGUUCCCCCAACUGA-CACAAACC-GUGCAA-UUUGGAACCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGGCUCCA----CGCUCGGUCCACU--GGCGAGUG----UUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGAU-GGCUGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCAACU-GGACCUAUCAUGUGUGC---AACCCCA--GCACAGCAACUUUUCUGUGAAACU--CA-CUUCAA---GGUGGC----------------------ACUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGCCAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUAUAAAA---GCGUCCAGUUUAAAAAGCUUCUAU-GCCUGGAUAGGUGACCGGAGG-CCGGCACCUUUU-C-UU-UAU-AACCACUGACUU
>AY593789.1_558-1018
AAGCAGGUCCCCCCAACUGA-CACAAAUC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUG----UUAGUAACGGCACUGUUGCUUCG-UAGCGGAGCAUGAC-GGCCGCGGGAAUUCCUCCUUGGUAACAAGGACCCGCGGGGCCAAAAGCCACGUCCCAAC-GGACCCGUCAUGUGUGC---AACCCCA--GCACAGCAACUUUUCUGUGAAACC--CA-CUUCAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AACACU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGCAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGG---UUCUAUAAAA---CCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-C-UU-UAU-UACCACUGAAUU
>AY593829.1_633-1093
AAACAGGUUUCCCCAACUGA-CAUACACC-GUGCAA-UUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACACUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUG----UUAGUAACAGCACUGGUGCUUCG-UAGCGGAGCAUGGU-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUGAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACUUUUCUGUGAAACU--CA-CUCUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUAUUCA-AGUACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUGUAAAA---GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGGAUAGGUGACCGGAGG-CCGGCGCCUUUC-C-AU-UAU-AACUACUGACUU
>AY593793.1_633-1094
AAGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACGUU-GUACUGUGCC---UGACUCCA----CGCUCGGUCCACU--AGCGGGUG----UUAGUAACAGCACUGUUGUUUCG-UAGCGGAGCAUGAU-GGCCGCGGGAACUCCGCCUUGGUGACAAGGACCCGCGGGGCCGAAAGCCACGUCCUAAC-GGACCCAUCAUGUGUGC---AACCCCA--GCACAACAACUUUUCUGUGAAACC--CA-CCUUAA---GGUGAC----------------------ACUGACAC-----------------------UGGUACUCA-GACACU-------GGUGACAGGA--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-UGACAC-UCGGGAUCU-GAGAAGGGGA-CUA-GGGC---UUCUGUAAAA---GUGCCUAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CUUU-UAC-AACCACUGAUCA
>AY593809.1_632-1093
AAGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCCACU--AGCGGGUG----UUAGUAACAGCACUGUUGUUUCG-UAGCGGAGCAUGAU-GGCCGUGGGAACUCCGCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUAAC-GGACCCAUCAUGUGUGC---AACCCCA--GCACAACAACUUUUCUGUGAAACC--UA-CCUUAA---GGUGAC----------------------GCUGAUAC-----------------------UGGUACUCA-GACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUA-GGGC---UUCUGUAAAA---GUGCCUAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CCUU-UAC-AACUACUGACUA
>AY593770.1_545-1005
AAGCAGGUUUCCACAACUGA-CAUAAACC-GUGCAA-UUUGAAGCUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGGCUCCA----CGCUCGAUCCACU--GGCGAGUG----UUAGUAACACCACUGCUACUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAAACCCCCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCUAAC-UGACCCGUCAUGUGUGC---AACCCCA--GCACGGUAGCUUUGCUGUGAAACU--CA-CUUUAA---GGUGAC----------------------AUUGAUAC-----------------------UGGUACCCA-GACACU-------GGUGACAGGC--UAAGGAUGCCCUCCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGGAGGGGA-CUA-GGGC---CUCUAUAAAG---GCGCCUGGUUUAAAAAACUUCUAC-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-C-CC-UAU-AAUCACUGACCA
>AY593767.1_631-1092
AAACAGGCUCCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGGCUCCG----CGUUCGAUCCACC--GGCGAGUG----UUAGUAACACCACUGCUACUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACCCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCACAU-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGUAGCUUUGCUGUGAAACU--CA-CUUUAA---AGUGAC----------------------AUUGAUAC-----------------------CGGUACCCA-AAUACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAUG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUGUAAAA---GCGCUCAGUUUAAAAAGCUUCUAU-GUCUGGAUAGGUGACCGGAGG-CCGGCACCUUUU-CUUU-UAC-UAUUUGACUCUA
>AY593771.1_631-1092
AAGCAGGUUUCUCCAACUGA-CACAAACC-GUGCAA-UUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGGCUCCA----CGUUUGACCCACU--GGCGAGUG----UCAGUAACAACACUGCUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAGCUCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCACAC-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGUAGCUUUGCUGUGAAACU--CA-CUUUAA---AGUGAC----------------------GUUGAUAC-----------------------UGGUACCCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGGGGUAACACG-CGACAC-CCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUGUAAAA---GCGCCCAGUUUAAAAAACUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-AAC-UAUUUUGACUUU
>AY593778.1_631-1092
AAGCAGGUUUCUCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGGCUCCA----CGUUCGAUCCACU--GGCGAGUG----UUAGUAACACCACUGCUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCGAAU-GGACCCGCCAUGUGUGC---AACCCCA--GCACGGUAGCUUUGUUGUGAAACC--CA-CUUUAA---AGUGAC----------------------AUUGAUAC-----------------------UGGUACCCA-AAUACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUGUAAAA---GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CUCU-AAC-UACUUUGACUCU
>AY593780.1_631-1092
AAGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGGCUCCA----CGUUCGAUCCACU--GGCGAGUG----UUAGUAACACCACUGCUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCGAAU-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGUAGCUUUGUUGUGAAACU--CA-CUUUAA---AGUGAC----------------------AUUGAUAC-----------------------UGGUACCCA-AAUACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGCAACAUG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUGUAAAA---GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CUCU-AAC-UACUUUGACUCU
>AY593792.1_631-1092
AAGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCAUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGGCUCCA----CGUUCGAUCCACU--GGCGAGUG----UUAGUAACACCACUGCUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCGGAU-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGUAGCUUUGUUGUGAAACU--CA-CUUUAA---AGUGAC----------------------AUUGAUAC-----------------------UGGUACCCA-AAUACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAUG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUGUAAAA---GCGCCCAGUUUAAAAAACUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CUUU-AAC-UACUUUGACACU
>AY593760.1_588-1049
AAGCAGACUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGGCUCCA----CGUUCGAUCCACU--GGCGAGUG----UUAGUAACACCACUGCUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCGAAU-GGACCCGUCAUGUGUGC---AACCCCG--GCACGGUAGCUUUGUUGUGAAACU--CA-CUUUAA---AGUGAC----------------------AUUGAUAC-----------------------UGGUACCCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGGAACAUG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUGUAAAA---GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CUCU-AAC-UACACUUACUCU
>AY593753.1_632-1093
AAGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACACUUU-GUACUGUGUU---UGGCUCCA----CGUUCGAUCCACU--GGCGAGUG----UUAGUAACAACACUGCUACUUCG-UAGCGGAGCAUGGC-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCACAU-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGUAGCUUUGUUGUGAAACC--CA-CUUUAA---AGUGAC----------------------ACUGAUAC-----------------------UGGUACCCA-AAUACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUAUAAAA---GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CUUU-AAU-UACACUGAAAUU
>AY593757.1_631-1092
AAGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGGCUCCA----CGUUCGAUCCACU--GGCGAGUG----UUAGUAACAACACUGCUACUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCACAU-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGUAGCUUUGUUGUGAAACC--CA-CUUUAA---AGUGAC----------------------AUUGAUAC-----------------------UGGUACCCA-AAUACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUAUAAAA---GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CUUU-AAU-CACAUUGAAAUU
>AY593794.1_627-1087
AUGCAGGUUUCCCCAACUGA-CACACACC-GUGCAA-AUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGGCUCCA----CGCUCGACCCACU--GGCGAGUG----UUAGUAACACCACUGCUACUUCG-UCGCGGAGCAUGAC-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCGGAC-GGACCCGUCAUGUGUGC---AACCCCA--GCACAGUAGCUUUGUUGUGAAACC--CA-CUUUAA---AGUGAC----------------------GUUGAUAC-----------------------UGGUACCCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUCCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGGAGGGGA-CUG-GGGC---UUCUUUAAA----GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CUCU-UAC-CUACUUUGACUG
>AJ251476.1_211-672
AAGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-UUUGAAACUCCGCCUGGGCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGACUCCA----CGCUCGAUCCACU--GGCGAGUG----UUAGUAACAACACUGCUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGACCCCCCCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCGAAU-GGACCCGUCAUGUGUGC---AAACCCA--GCACAGUACCUUUGUUGUGAAACU--CA-CUUUAA---AGUGAC----------------------AUUGAUAC-----------------------UGGUACUCA-AGCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-UGACAC-UCGGGAUCU-GAGAAGGGGA-CCG-GGGC---UUCUAUAAAA---GCGCCCGGUUUAAAAAGCUUCUAU-GUCUGAAUAGGUGACCGGAGG-CAGGCACCUUUC-UUUU-AAU-UACACUGGACUU
>AY593788.1_630-1091
ACGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAG-CUUGGCGCUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACAUGUU-GUACUGUGUU---UGGCUCCA----CGCUCGAUCCACC--GGCGAGUA----CUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGUC-GGCCGUGGGAACUCCCCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCGCAA-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGUGAAACA--CA-CUUUAA---GGUGAC----------------------AUUGAAAC-----------------------UGGUACCCA-AUCACU-------GGUGACAGGC--UAAGGAUGCCCUCCAGGUACCCCGAGGUAACAUG-AGACAC-UCGGGAUCU-GAGGAGGGGA-CUG-AGGC---UUCUAUAAAA---GCGCUCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CUUU-UAU-AACUAUGAACUA
>AY593803.1_632-1092
ACGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAG-CUUGACACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACAUGUU-GUACUGUGUU---UGGCUCCA----CGCUCGGUCCACC--GGCGAGUG----CUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACCCCCCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCACAC-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGUGAAACA--CA-CUUUAA---AGUGAC----------------------ACUGAAAC-----------------------UGGUACCCA-AUCACU-------GGUGACAGGC--UAAGGAUGCCCUCCAGGUACCCCGAGGUAACACG-AGACAC-UCGGGAUCU-GAGGAGGGGA-CUG-AGGC---UUCUAUAAAA---GCGCUCGGUUCAAAAAGCUUCUAC-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-C-UU-UAU-AAUUAUGAACUA
>AJ133359.1_577-1038
AAGCAGGUUUCUCCAACUGA-CACAAAAC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACACUUU-GUACUGCGUU---UGGCUCCA----CGCUCGAUCCACU--GGCGAGUG----UUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGCCCACAC-GGGCCCGUCAUGUGUGC---AACCCCA--GCACGGCGACUUUACUGCGAAACC--CA-CUUUAA---AGUGAC----------------------AUUGAAAC-----------------------UGGUACCCA-CACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUAUAAAA---GUGCUCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-UCGGCACCUUUC-CUUU-GUA-AUUAAUGACCCU
>AF274010.1_577-1038
AAGCAGGUUUCCCCAACUGA-CACAAAAC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACACUUU-GUACUGUGUU---UGGCUCCA----CGCUCGAUCCACU--GGCGAGUG----UUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGCCCACAC-GGGCCCGUCAUGUGUGC---AACCCCA--GCACGGCGACUUUACUGCGAAACC--CA-CUUUAA---AGUGAC----------------------AUUGAAAC-----------------------UGGUACCCA-CACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUAUAAAA---GCGCUCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-UCGGCACCUUUC-CUUU-ACA-AUUAAUGACCCU
>AY593808.1_632-1093
ACGCAGGUUUCCCCAACUGA-CACACACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGUU---UGGCUCCA----CGCUCGAUCCACU--GGCGAGUG----UUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGCCCAAAC-GGGCCCGUCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGCGAAACC--CA-CUUUAA---AGUGAC----------------------AUUGAUAC-----------------------UGGUACCCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUAUAAAA---GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CUUU-ACA-AUUAAUGACCCU
>AY593802.1_629-1089
AUGCAGGUUUCCCCAACCGA-CACAAACC-GUGCAA-UCUGAAGUUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGAUGACACUUU-GUACUGCACU---UGGCUCCA----CGCUCGAUCCAUC--GGCGAGUG----UUAGUAACAGCACUAUUGCUUCG-UAGCGGAGCAUGAU-GGCCGUGGGACCUCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCAC-U-GGACCCAUCAUGUGUGC---AACCCCA--GCACAGCAACUUUACUGUGAAACU--CA-CUUUAA---GAUGAC----------------------AUUGAUAC-----------------------UGGUACCCA-CGUGCU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAUG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CCG-GGGU---UUCUGUAAAA---ACGCCCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UAU-ACUCACUGAUUU
>AJ007572.1_620-1080
AUGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAGCUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAUUUU-GUACUGUGCU---UGGCUCCA----CGCUCGAUCCAUC--GGCGGGUG----UUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGAA-GGCCGUGGGACCUCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCAC-U-GGACCCUUCAUGCGUGC---AUUCCCA--GCACGGCAACUUUACUGUGAAAUC--CA-CUUUAA---GAUGAC----------------------AUUGAUAC-----------------------UGGUACCCA-AGUGCU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-UGACAC-UCGGAAUCU-GAGAAGGGGA-CCG-GGGU---CUCUAUAAAA---UCGCCCGGUUUAAAAAGCUUCUAC-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UAU-ACCUACUGACUU
>AY593756.1_544-1004
AUGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAGCUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGCGACACUUU-GUACUGUGUU---UGGCUCCA----CGCUUGACUCAUC--GGCGAGUG----UUAGUAGCAGCACUGUUGCUUCG-UAGCGGAGCAUGAU-GGCCGUGGGAAUUCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCACAC-GGACCCAUCAUGUGUGC---AACCCCA--GCACAGCAACUUUACUGUGAAACU--CA-CUUUAA---GAUGAC----------------------GUUGAUAC-----------------------UGGUACCCA-AGCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUUUAAAA---GCGCCCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-C-UU-UAC-AACUAUUGACAU
>AY593782.1_628-1086
AUGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-UCUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGCA---UGACUCCA----CGUUCGAUCCACU--GGCGAGUG----CUAGUAGUAGUACUGCUGUUUCG-UAGCGGAACACGAC-GGCCGUGGGACUCCCCCCUUGGUAACAAGGACCCGCGGGGCCAAAAGCCACGUCU---C-UGACCCGUCGUGUGUGC---AAACCCA--GCACAGCAGCUUUACUGCGAAAAC--CA-CUUUAA---GGUGAC----------------------AUUGAUAC-----------------------UGGUACUCA-CGCACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGCAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUGUAAAA---GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CCUC-UAC-UACCACUGACUC
>AY593806.1_631-1092
ACGCAGGUUUCCCCAACUGA-CACAACCC-GUGCAA-CUUGAAACUCCGCUUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGUGCU---UGGCUCCA----CGCUCGAUCCACU--GGCGAGUG----UUAGUAGCAGCACUGUUGCUUCG-UAGCGGAGCAUGAC-GGCCGUGGGAAUCCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCAAAC-GGACCCGCCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGCGAAAAC--CA-CUUUAA---GGUGAC----------------------AUUGACAC-----------------------UGGUACCCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUAUAAAA---GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-UCUU-UAC-ACCUACUGACUU
>AY593821.1_631-1092
AAGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGGCACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACCUU-GUACUGUGUU---UGACUCCA----CGCUCGAUCCACU--GGCGAGUG----UUAGUAACAGCACUGUUGCUUCG-UAGCGGAGCAUGGU-GGCCGUGGGGCUUCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUAAC-GGACCCACCAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGCGAAACC--UA-CUUUAA---GGUGAC----------------------AUUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CCG-GGGC---UUCUGUAAAA---GUGCUCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CUUU-UAC-AAACUUCAACUU
>D10143.1_253-713
AUGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACACUUU-GUACUGAGUU---UGACUCCA----CGCUCGAUCCACU--AGCGAGUG----UUAGUAGCGGUACUGCUGUCUCG-UAGCGGAGCAUGUU-GGCCGUGGGAACACCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUAAC-GGACCCAACAUGUGUGC---AACCCCA--GCACGGCAGCUUUACUGUGAAACC--CA-CUUCAA---GGUGAC----------------------AUUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGAC---UCCUUUAAA----GUGCCCAGUUUAAAAAGCUUCUAU-GCCGGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CUUU-UAU-AACCACUGAAUA
>AY593820.1_632-1092
AUGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACAUUUU-GUACUGCGUU---UGACUCCA----CGCUCGAUCCACU--AGCGAGUG----UUAGUAGCGGUACUGCUGUCUCG-UAGCGGAGCAUGUU-GGCCGUGGGAACACCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCCUAAC-GGACCCAACAUGUGUGC---AACCCCA--GCACGGCAGCUUUACUGUGAAACC--CA-CUUCAA---GGUGAC----------------------AUUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGAC---UUCUUUAAA----GUGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CUUU-UAU-AACCACUGAACA
>D10144.1_253-713
AUGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACAUUUU-GUACUGUGUU---UGACUCCA----CGCUCGAUCCACU--AGCGAGUG----UUAGUAGCGGUACUGCUGUCUCG-UAGCGGAGCAUGUU-GGCCGUGGGAACACCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCAUGUCCUAAC-GGACCCAAUAUGUGUGC---AACCCCA--GCACGGCAGCUUUACUGUGAAACC--CA-CUUCAA---GGUGAC----------------------AUUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGAC---UUCUUUAAA----GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CUUU-UAU-AACCACUGAAUA
>AY593817.1_632-1092
AUGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACAUUUU-GUACUGUGUU---UGACUCCA----CGCUCGAUCCACU--AGCGAGUG----UUAGUAGCGGUACUGCUGUCUCG-UAGCGGAGCAUGUU-GGCCGUGGGAACACCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCAUGUCCUAAC-GGACCCAACAUGUGUGC---AACCCCA--GCACGGCAACUUUACUGUGAAACC--CA-CUUCAA---GGUGAC----------------------AUUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGAC---UUCUUUAAA----GUGCCCAGUUUAAAAAGCUUCUAU-GUCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CUUU-UAU-AACCACUGAGCA
>AY593814.1_628-1088
AUGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACUCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUAACAUUUU-GUACUGUGUU---UGGCUCCA----CGCUCGAUCCACU--AGCGAGUG----UUAGUAGCGGUACUGCUGUCUCG-UAGCGGAGCAUGUU-GGCCGUGGGAACACCUCCUUGGCAACAAGGACCCACGGGGCCGCAAGCCACGUCCUAAC-GGACCCAACAUGUGUGC---AACCCCA--GCACGGCAGCUUUACUGUGAAACC--CA-CUUCAA---GGUGAC----------------------AUUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGAC---UUCUUUAAA----GUGCCCAGUUUAAAAAGCUUCUAU-GUCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CUUU-UAC-AACCACUGAACA
>AY593773.1_632-1093
AUGCAGGUUUCCCCAACUGA-CACAAACC-GUGCAA-CUUGAAACCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAUUUU-GUACCGUGCU---UGACUCCA----CGCUCGAUCCACU--GGCGAGUG----UUAGUAGCGGCACUGCUGUCUCG-UAGCGGAGCAUGUU-GGCCGUGGGAACACCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCUAAC-GGACCCAACAUGUGUGC---AACCCCA--GCACGGCAGUUUUACUGUGAAACC--CA-CUUCAA---GGUGAC----------------------AUUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGG-CUG-GGGC---UUCUAUAAAA---GCGCUCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CUCU-UAC-AAAUUUUAAACU
>AY593776.1_589-1047
ACGCAGGUUUCC-CAACUGA-CACUAACC-GUGCAA-CUUGAAAUCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAAUUU-GUACUGUGUU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUG----UUAGUAGCAGCACUGUUGUCUCG-UAGCGGAGCAUGAU-GGCCGUGGGAAUCCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCCAAU-GGACCCAUCAUGUGUGC---AACCCCA--GCACGGCAACCUUUCUGUGAAACU--CA-CUUCAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AAUACU-------GGUGGCAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-AGGC---UUCUUUAAAG---GCGCUCGGUUUAAAAAGCUUCUAU-GCCUGAACAGGUGACCGGAGG-UCGGCACCUUUC---UC-UAC-AACCACUGAUUU
>AY593759.1_590-1049
ACGCAGGUUCCCCCAACUGA-CACCAACC-GUGCAA-CUUGAAAUCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAAUUU-GUACUGUGUU---UGACUCCA----CGCUCGGUUCACU--GGCGAGUG----UUAGUAGCAGCACUGUUGUCUCG-UAGCGGAGCAUGAU-GGCCGUGGGAAUUCCUCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCGCGUCCUAAC-GGACCCAUCAUGUGUGC---AGCCCCA--GCACGGCAACUUUUCUGGGAAACC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AAUACU-------GGUGGCAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CCG-AGGC---UUCUUUAAAA---GCGCUCGGUUUAAAAAGCUUCUAU-GCCUGAACAGGUGACCGGAGG-UCGGCACCUUUC---UC-UAC-AACCACUGAUUU
>AY593751.1_594-1053
ACGCAGGUUUCCCCAACUGA-CACUUACC-GUGCAA-CUUGAAAUCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAAUUU-GUACUGUGGU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUG----CUAGUAGCAGCACUGUUGUCUCG-UAGCGGAGCAUGAU-GGCCGUGGGAAUCCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCUAAC-GGACCCAUCAUGUGUGC---AACCCCA--GCACGGCGACUUUCCUGUGAAACC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AACACU-------GGUGGCAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UUGGGAUCU-GAGAAGGGGA-CUG-AGGC---UUCUUUAAAA---GCGCUCGGUUUAAAAAGCUUCUAC-GCCUGAACAGGUGACCGGAGG-CCGGCACCUUUC---UC-UAC-AAUCACUGAUAC
>AY593774.1_596-1054
ACGCAGGUUUCC-CAACUGA-CACUAACC-GUGCAA-CUUGAAAUCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAAUUU-GUACUGUGUU---UGACUCCA----CGCUCGGUCCACU--GGCGAGUG----CUAGUAGCAGCACUGUCGUCUCG-UAGCGGAGCAUGAU-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCUAAC-GGACCCAUCAUGUGUGC---AACCCCA--GCACGGCGACUUUUCUGUGAAACC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AAUACU-------GGCGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-AGGC---UUCUUUAAAA---GCGCUCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC---UC-UAC-AACCACCGAUUU
>AY593822.1_595-1054
ACGCAGGUUUCCCCAACUGA-CACUAACC-GUGCAA-CUUGAAAUCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAAUUU-GUACUGUGUU---UGACUCCA----CGCUCGGUCCACC--GGCGAUUG----CUAGUAACAGCACUGUCGUCUCG-UAGCGGAGCAUGAU-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCUAAC-GGACCCAUCAUGUGUGU---AACCCCA--ACACGGCGACUUUUCUGUGAAACC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AAUACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCAAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-AGGC---UUCUUUAAAA---GCGCUCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC---UU-UAC-AACCACUGAUUU
>AY593826.1_597-1056
ACGCAGGUUUCCCCAACUGA-CACUAACC-GUGCAA-CUUGAAAUCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACAAUUU-GUACUGUGUU---UGACUCCA----CGCUCGGCCCACC--GGCGAGUG----UUAGUAGCAGCACUGUCGUCUCG-UAGCGGAGCAUGAU-GGCCGUGGGAACUCCUCCUUGGUAACAAGGACCCACGGGGCCAAAAGCCACGUCCUAAC-GGACCCGUCAUGUGUGC---AACCCCA--GCACGGCGACUUUUCUGUGAAACC--CA-CUUUAA---GGUGAC----------------------ACUGAUAC-----------------------UGGUACUCA-AAUACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-CGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-AGGU---UUCUUUAAAA---GCGCUCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC---UU-UAC-AACCACUGAUAC
>AF511039.1_582-1038
ACGCAGGUUUCCUCAACUGA-CACAACUC-GUGCAA-ACUGUAACCCCGCCUGGUCUUUC-CAGGUCUGGA----GGGGA-AGCUUUU-GUACUGUGUU---UGGCUCCA----CGUUCGGUCUACU--GGCGAGCG----CUAGUAGUGGCAAUGUUGUUUCG-UAGCGGAGCAUGUU-GGCCGUGGGAAUCCCUCCUUGGCGACAAGGACCCACGGGGCCGCAAGCCACGUCU---U-UGACCCAACAUGUGUGC---AACCCCA--GCACGGCAACCUUGCCACGAAAAC--CA-CUUCAA---GGUAAC----------------------ACUGAUAC-----------------------UGGUACUCA-AAUACU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-GGACAC-UUGGGAUCU-GAGAAGGGGA-UUG-GGAC---UUCUAUAAAA---GUGCCCAAUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-C-UC-UAC-AACUACUUUACC
>AY593813.1_543-1005
AAUCAGGUUUCCUCAACUGA-CACAAACC-GUGCAA-UCUGCAGCUCCGCCUGGUCUUUC-CAGGUCUAGA----GGAGUAACAUUUU-GUACUGUGCU---UGACUCCA----CGCUCGGUCUACU--GGCGGGUG----UUAGUAGCGGCACUGUUGCUUCG-UAGCGGAGCAUGUU-GGCCGUGGGAACUCCUCCUUGGCAACAAGGACCCACGGGGCCAAAAGCCACGUCCUCAU-GGACCCAACAUGUGUGC---AACCCCA--GCACGGCAACUUUUCCGCGAAAAC--CA-CUUUAA---GGUAAC----------------------ACUGAUAC-----------------------UGGUACUCA-AACGCU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-UGACAC-UUGGGAUCU-GAGAAGGGGA-CUA-GGGC---UUCUAUAAAA---GCGCCUGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CCUU-UUCGCACUACUAAACA
>AY593761.1_586-1045
ACGCAGGUC-CCUCAACUGG-UACAAACC-GUGCAA-CUUGAAACCCCGCCUGGUCUUUC-CAGGUCUAGA----GGGGUGACACUUU-GUACUGCGCA---UGACUCCA----CGUUCGGCCUACU--GGCGGGUG----CUAGUAACGGUGUUGUUGUUUCG-UAGCGGAGCAUGUU-GGCCGUGGGAACCCCCCCUUGGUAACAAGGACCCACGGGGCCGAAAGCCACGUCUUC-C-AGACCCAACAUGUGUGC---AACCCCA--GCACGGCAACUUCAUCGUGAACAC--CA-CCUUAA---GGCAAC----------------------GCUGAUAC-----------------------UGGUACUCA-GACGCU-------GGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCAAGGUAACAAG-AGACAC-UUGGGAUCU-GAGAAGGGGA-CCG-GGGC---UUCUGUAAAA---GCGCCCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CUUU-GUU-AACUCUUAACUU
>AY593842.1_589-1047
ACGCAGGAAUCUUAGACCAA-C-CCGCCC-GUGCAA-CUGCAAGUUUCGCCCGGUCUUUC-CGGGUCUUGA----GAGACAAACAGAU-GUACUGAGGC---CAACUCCA----CGAUUGGUCUACU--AGCGGGUA----CUAGUAACACUCACUUUGCUUCG-UAGCGGAGCACAUG-AGCGGCGGGAACACCCCCAUGGUAACAUGGACCCGUCGGGCCAAAAGCCACGCCUCA---CGGCCUCAUGUGUGUGC---AACCCCA--GCACGGCAACUUGUUUGUGAACCA--CA-CCUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-AGACAC-UCGGGAUCU-GAGAAGGGGA-CCA-GAAG---UUCUAUCAAA---CUGUCUGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UAC-UUAAACCCAAUU
>AY593851.1_589-1048
ACGCAGGAAUCUUAGACCAA-CCCUACCC-GUGCAA-CUGCAAGUUUCGCCCGGUCUUUC-CGGGUCUAGA----GAGACAAACAGAU-GUACUGAGGC---CAACUCCA----CGAUUGGUCUACU--AGCGGGUA----CUAGUAACACUCACUUUGCUUCG-UAGCGGAGCACAUG-AGCGGCGGGAUUUCCCCCAUGGUGACAUGGACCCGCCGGGCCAAAAGCCACGCCUCA---CGGCCUCAUGUGUGUGC---AACCCCA--GCACGGCAAUUUGUCUGUGAAACA--CA-CCUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUCCAGGUACCCCGAGGUAACACG-AGACAC-UCGGGAUCU-GAGAAGGGGA-CCA-GGAG---UUCUAUCAAA---CUGCCUGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UAC-UACACCUUAUUU
>AY593840.1_589-1048
ACGCAGGAAUCUUAGACCAA-CCCAACCC-GUGCAA-CUGCAAGUCUCGCCCGGUCUUUC-CGGGUCUUGA----GGGAUAAACAGAU-GUACUGAGAU---CAACUCCA----CGAUUGGUCUACU--AGCGGGUA----CUAGUAACACUCACUUUGCUUCG-UAGCGGAGCACAUG-AGCGGCGGGAUCUCCCCCAUGGUAACAUGGACCCGCCGGGCCAAAAGCCACGCCUCA---CGGCCUCAUGUGUGUGC---AACCCCA--GCACGGCAACUUGUUUGUGAAACA--CA-CCUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAUG-AGACAC-UCGGGAUCU-GAGAAGGGGA-CCA-GGAG---UUCUAUCAAA---CUGCCUGAUUCAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UUA-UUUUACUCAAUU
>AF540910.1_596-1056
ACGCAGGAAUCUUAGACCAA-CCCAACCC-GUGCAC-CUGCAAGUUUCGCCCGGUCCUUC-CGGGUCUUGA----GAGACAAACAGAU-GUACUGAGAU---CAACUCCA----CGAUUGGUCUACU--AGCGGGUA----CUAGUAACACUCACUUUGCUUCG-UAGCGGAGCACAUG-AGCGGUGGGACCUCCCCCAUGGUAACAUGGACCCACCGGGCCAAAAGCCACGCCUCA---CGGCCUCAUGUGUGUGC---AACCCCA--GCACGGCAACUUGUUUGUGAAACA--CA-CCUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-AUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-AGACACUUCGGGAUCU-GAGAAGGGGA-CCA-GGAG---UUCUAUCAAA---CUGCCCGGUUUAAAAAGCUUCUAU-GCCUGGAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UAU-UUAAACUCACUU
>AY593843.1_590-1049
ACGCAGGAAUCUCAGACCAA-CCCAACCC-GUGCAA-CUGCAAGUUUCACCCGGUCUUUC-CGGGUCUUGA----GAGACAAACAGAU-GUACUGAGAU---CAACUCCA----CGAUUGGUCUACU--AGCGGGUA----CUAGUAACACUCACUUUGCUUCG-UAGCGGAGCACAUG-AGCGGUGGGAGCUCCCCCAUGGUAACAUGGACCCACCGGGCCAAAAGCCACGCCUCACA---GCCUCAUGUGUGUGC---AACCCCA--GCACGGCAAUUUGUUUGUGAACCA--CA-CCUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-AGACAC-UCGGGAUCU-GAGAAGGGGA-CCA-GGAG---UUCUAUCAAA---CUGCCCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UAU-CUAAACUCAAUU
>AY593841.1_588-1047
ACGCAGGAAUCUUAGACCAA-CCCAACCC-GUGCAG-CUGCAAGUUUCGCCCGGUCUUUC-CGGGUCUAGA----GAGACAAACAGAU-GUACUGAGAU---CAACUCCA----CGAUUGGUCUACU--AGCGGGUA----CUAGUAACACUCACUUUGCUUCG-UAGCGGAGCACAUG-AGCGGUGGGAACUCCCCCAUGGUAACAUGGACCCACCGGGCCAAAAGCCACGCCUCA---CGGCCUCAUGUGUGUGC---AACCCCA--GCACGGCAAUUUGUUUGUGAAACA--CA-CCUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-AGACAC-UCGGGAUCU-GAGAAGGGGA-CCA-GGAG---UUCUAUAAAA---CUGCCUGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UAC-UCAAAUUUCAUU
>AY593845.1_585-1044
ACGCAGGAAUCUUAGACCAA-CCCAACCC-GUGCAA-CUGCAAGUUUCGCCCGGUCUUUC-CGGGUCUAGA----GAGACAAACAGAU-GUACUGAGAU---CAACUCCA----CGAUUGGUCUACU--AGCGGGUA----UUAGUAACACUCACUUUGCUUCG-UAGCGGAGCGCAUG-AGCGGCGGGAACUCCCCCAUGGUAACAUGGACCCGCCGGGCCAAAAGCCACGCCUCA---CGGCCUCAUGCGUGUGC---AACCCCA--GCACGGCAAUUUGUUUGUGAAACG--CA-CCUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-AGACAC-UCGGGAUCU-GAGAAGGGGA-UCG-GGAG---UUCUAUCAAA---CUGCCCGGUUUAAAAAGCUUCUAC-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UAU-UUUAAACCUAUU
>AY593853.1_545-1004
ACGCAGGAAUCUUAGACCAA-CCCAACCC-GUGCAA-CUGCAAGUUUCGCCCGGUCUUUC-CGGGUCUAGA----GAGACGAACAGAU-GUACUGAGAU---CAACGCCA----CGAUUGGUCUACU--GGCGGGUA----CUAGUAACACUCACUUUGCUUCG-UAGCGGAGCACAUG-AGCGGUGGGAACUCCCCCAUGGUAACAUGGACCCACCGGGCCAAAAGCCACGCCUCA---CGGCCUCAUGUGUGUGC---AACCCCA--GCACGGCAAUUUGUUUGUGAAACA--CA-CCUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-AGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGAG---UUCUAUCAAA---CUGCCCGGUUUAAAAACCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-GUU-UAAACUCAAUUU
>AY593838.1_588-1047
ACGCAGGAAUCCUAGACCAA-CCCAACCC-GUGCAA-CUGCAAGUUUCGCCCGGUCUUUC-CGGGUCUAGA----GAGACGAACAGAU-GUACUGAGAU---CAACUCCA----CGAUUGGUCUACU--AGCGGGUG----UUAGUAACACUCACUUUGCUUCG-UAGCGGAGCGCAUG-AGCGGCGGGAACUCCCCCAUGGUAACAUGGACCCUCCGGGCCAAAAGCCACGCCUCA---CGGCCUCAUGCGUGUGC---AACCCCA--GCACGGCAAUUUGUUUGUGAAACA--CA-CCUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-AGACAC-UCGGGAUCU-GAGAAGGGGA-CCG-GGAG---UUCUAUCAAA---CUGCCCGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUA-UUU-AAACCUUGAUUU
>AY593848.1_546-1005
ACGCAGGAAUCUUAGACCAA-CCCAACCC-GUGCAA-CUGCAAGUUUCGCCCGGUCUUUC-CGGGUCUUGA----GAGACAAACAGAU-GUACUGAGAC---CGACUCCA----CGAUUGGUCUACU--GGCGGAUG----CUAGUAACACUCACUUUGCUUCG-UAGCGGAGCGCAUG-AGCGGUGGGAACACCCCCAUGGUAACAUGGACCCACCGGGCCAAAAGCCACGCCUCA---CGGCCUCAUGUGUGUGC---AACCCCA--GCACGGCAACUUGUUUGUGAAACA--CA-UCUUAA---AGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-AGACAC-UCGGGAUCU-GAGAAGGGGA-CCA-GGAG---UUCUAUAAAG---CUGCCUGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUCUU-CCUU-UAC-UUGACUUAUUUU
>AY593850.1_588-1048
ACGCAGGAAUCUUAGACCAA-CCCAAACCCGUGCAA-CUGCAAGUUUCGCCCGGUCUUUC-CGGGUCUAGA----GAGACAAACAGAU-GUACUGAGAC---UGACUCCA----CGACUGGUCUACU--GGCGGGUG----CUAGUAACACUCACUUUGCUUCG-UAGCGGAGCACAUG-AGCGGUGGGAACACCCCCGUGGUAACACGGACCCACCGGGCCAAAAGCCACGCCUCA---CGGCCUCAUGUGUGUGC---AACCCCA--GCACGGCAAAUUGUUUGUGAAACA--CA-UCUUAA---GGUAAC----------------------ACUGGGAC-----------------------UGGUACUUA-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-AGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GAAG---UUCUUUAAAA---CUGUCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UUA-UCCAACACAUUU
>AY593846.1_546-1006
ACGCAGGAAUCUUAGACCAA-CCCAAACCCGUGCAA-CUGCAAGUUUCGCCCGGUCUUUC-CGGGUCUAGA----GAGACAAACAGGU-GUACUGAGAC---UGACUCCA----CGAUCGGUCUACU--AGCGGGUG----UUAGUAACACUCAUUUUGCUUCG-UAGCGGAGCACAUG-AGCGGUGGGACCUCCCCCAUGGUAACAUGGACUCACCGGGCCAAAAGCCACGCCUCA---CGGCCUCAUGUGUGUGC---AACCCCA--GCACGGCAACUUGUUUGUGAAACC--CA-CCUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACACG-AGACAC-UCGGGAUCU-GAGAAGGGGA-CCA-GGAG---UUCUUUAAAA---CUGCCUGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UAU-CAAUACUACAUU
>AY593839.1_546-1005
ACGCAGGAAUCCUAGACCAACCACAACCC-GUGCAA-CUGCAAGUUUCGCCCGGUCUUUC-CGGGUCUAGA----GAGACAAACAGCU-GUACUGAGAC---UGACUCCA----CGAUCGGUCUACU--AGCGGGUG----CUAGUAACACUUACUUUGCUUCG-UAGCGGAGCACAUG-AGCGACGGGAACACCCCCAUGGUAACAUGGACCCGCCGGGCCAAAAGCCACGCCUCA---CGGCCUCAUGUGUGUGC---AACCCCA--GCACGGCGAUGUACUUGUGAACCA--CA-CCUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUCG-GUUUCU-------AGUGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-AGACAC-UUGGGAUCU-GAGAAGGGGA-CCA-GGAG---UUCUGUAAAA---CUGCCUGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UAC--UCAAUUGUACU
>AY593847.1_545-1003
ACGCAGGAAUCCUGGACCAA-CCACACCC-GUGCAU-UUACAAUCUUCGCCCGGUCUUUC-CGGGUCUUGA----GAGGAGACUAAGU-GUACUGAGAC---UGACUCCA----CGAUCGGUCUACU--GGCGGGUA----UUAGUAACACUCACUUUGCUUCG-UAGCGGAGCACAUG-AGCGGUGGGACCCCCCCCAUGGUGACAUGGACCCACCGGGCCAAAAGCCACGCUU---C-ACGCCUCAUGUGUGUGC---AACCCCA--GCACGGCAAUUUGCUUGUGAAACA--CA-CCUCAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUCA-AUCUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-AGACAC-UCGGGAUCU-GAGAAGGGGA-CCA-GGAG---UUCUUUAAAA---CUGCCUGGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUC-CUUU-UAC-AAACAACAAUUA
>AJ251473.1_214-672
ACGCAGGUUUCCUCAACUGA-CACAA-CC-GUGCAAACAUGAAGUUUCGCCCGGUCUUUC-CGGGUCUUGA----GAGACGACAUU-U-GUACUGAGAU---CAACUCCA----CAAUUGGUCUACU--GGCGGGUG----CUAGUAAUGACUUUGUUGCUUCG-UAGCGGAGCACGCA-AGCCGCGGGAACUCCCCCUUGGUAACAAGGACCCGCGGGGCCGAAAGCCACGUUCUC-U-GAACCUUGCGUGUGUGC---AACCCCA--GCACGGUAAUACUGUCAUGAAACA--CA-CUUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-UUG-GGGC---UUCUAUCCAA---GCGCCCAAUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAG--CCGGCACCUUUU-CCUU-UAC-UCACAACUUGUU
>AY593849.1_610-1068
ACGCAGGUUUCCUCAACUGA-CAUAA-CC-GUGCAA-ACUGAAGUUUCGCCCGGUCUUUC-CGGGUCUUGA----GAGACGACA-UUU-GUACUGAAAU---CAACUCCA----CAAUUGGUCUACU--GGCGGGUG----CUAGUAAUGACUUUGUUGCUUCG-UAGCGGAGCACGCA-AGCCGCGGGAACUCCCCCUUGGUAACAAGGACCCGCGGGGCCGAAAGCCACGUUCUC-U-GAACCUUGCGUGUGUGC---AACCCCA--GCACGGUAACACUGUCACGAAACA--CA-CUUUAA---GGUAAC----------------------ACCGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-CGACAC-UCGGGAUCU-GAGAAGGGGA-UUG-GGGC---UUCUAUCCAA---GCGCCCAAUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UAC-CCACAACUUACU
>AY593844.1_597-1056
AAGCAGGUUUCCUCAACUGA-CAU-ACCC-GUGCAA-CUUGAAGUUUCGCCUGGUCUUUC-CAGGUCUAGA----GAGACGACACUUU-GUACUGAACC---CAACUCCA----CGAUUGGUCUACU--GGCGGGUG----CUAGUAAUGGCUUUGUUGCUUCG-UAGCGGAGCAUGCA-AGCCGCGGGAACUCCCCCUUGGUGACAAGGACCCGCGGGGCCAAAAGCCACGUUCUC-U-GAACCUUGCAUGUGUGC---AACCCCA--GCACGGUGACACUGUUGUGAAACA--CA-CUUUAA---GGUAAC----------------------ACUGAGAC-----------------------UGGUACUUG-GUUUCU-------GGAGACAGGC--UAAGGAUGCCCUUCAGGUACCCCGAGGUAACAAG-AGACAC-UCGGGAUCU-GAGAAGGGGA-CUG-GGGC---UUCUUUAAAA---GCGCCCAGUUUAAAAAGCUUCUAU-GCCUGAAUAGGUGACCGGAGG-CCGGCACCUUUU-CCUU-UAU-ACAAAACCAUUU
>AF361253.1_413-905
CUAGCCGUUGCGCCUUAGCG-CACAGUCC----------UGAAGGCCCCACAUCUUGUGG-AUCUUGCCGU----GGACAUGUUUC----UGGCAUGUG---UUUCUCAAGCCUGCAACCGACGACU--GAACAGAC----GUGUGAACAG--UUUGAGUGUGG-UAGCGCUGUGUGAGUUGGCGGUGGAACCCCCUCGUGGUGACACGAGCCCCCGUGGCCAAAAGCCCAGUGUUUACAGCACCUCUCACAUCCAGGGAAACCCCACCCUGGCGCUCACUCUUAGUAACACU--UC-CUAGUA---GGUAUUAGGUGGUAAGCCGAGCUCUUCCUCGGUCUU--------------------GUUCUGAAUGCA-CACA-U-------GUCUAGGGGC--UAAGGAUGUCCUACAGGUACCCGCACGUAACCUUCAGAGAG-UGUGGAUCU-GAGUAGGAGA-CUGUGGUGCGCUGCUUUACAGACGUAGCCCAGUUUAAAAAACGUCUAU-GCCCCUACAGGGUCGCGGUGGGCCGCACCCUUUC-CUUU-UAC-AAACUUGGUUUU
>X96871.1_402-893
CUAGCCGUCGCGUC--UUAA-CGCGCAGC-CCUGAA-GG-----C----CCCACACCUUG-UGGAUCUUGC----CGUGGGUAUGUUU-CUGGCAUGUG---UUUCUCAAG---CCUGCAACCGAAGCCGAACAGCC----ACAUGAACAG--UUUGAGCGUGG-UAGCGCUGUGUGAGUUGGCGGUGGAUCCCCCUCGUGGUAACACGAGCCCCCGUGGCCAAAAGCCCAGUGUUUACAGCACCUCUCACAUCCAGGACGACCCCAUCCUGGCGCUCACUCUUAGU-AGUAU--GG-CUUAGUACGCAUUAG----------------------GUGGUAAGCCGAGCUCUCCCUCGGCCUUGUUCUGAAUGCA-CACA-U-------GUCUAGGGGC--UAAGGAUGUCCUACAGGUACCCGCACGUAACCUUCAGAGAG-UGCGGAUCU-GAGUAGGAGA-CCGUGGUGCACUGCUUUACAGAUGCAGCCCGGUUUAAAAAGCGUCUAU-GCCCCUACAGGGUAGCGGUGGGCCGCGCCCUUUC-CUUU-UAA-AACUACUUGUUC

Rfam family RF00210 maps to these 3 chains: 2NBX|1|A, 8HUJ|1|C, 8J7R|1|C See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Jump to results for:

Loop 1IL Column numbers: 34-35, 88-90
Loop 2IL Column numbers: 36-38, 86-87
Loop 3IL Column numbers: 41-44, 80-83
Loop 4IL Column numbers: 48-49, 66-76
Loop 5IL Column numbers: 53-54, 60-62
Loop 6HL Column numbers: 54-60
Loop 7IL Column numbers: 99-103, 375-377
Loop 8IL Column numbers: 107-108, 369-371
Loop 9IL Column numbers: 110-115, 343-367
Loop 10IL Column numbers: 122-123, 313-336
Loop 11IL Column numbers: 123-124, 311-313
Loop 12IL Column numbers: 127-133, 301-308
Loop 13IL Column numbers: 135-136, 297-299
Loop 14IL Column numbers: 137-142, 293-296
Loop 15IL Column numbers: 142-148, 287-293
Loop 16IL Column numbers: 161-168, 266-274
Loop 17IL Column numbers: 171-172, 254-263
Loop 18IL Column numbers: 179-181, 246-247
Loop 19J4 Column numbers: 182-184, 217-219, 229-232, 244-245
Loop 20IL Column numbers: 189-196, 211-212
Loop 21HL Column numbers: 201-206
Loop 22HL Column numbers: 221-227
Loop 23HL Column numbers: 235-241
Loop 24IL Column numbers: 397-406, 509-516
Loop 25J3 Column numbers: 410-411, 460-461, 499-505
Loop 26IL Column numbers: 415-422, 448-456
Loop 27IL Column numbers: 426-427, 442-444
Loop 28IL Column numbers: 427-428, 440-442
Loop 29HL Column numbers: 429-439
Loop 30IL Column numbers: 463-465, 496-497
Loop 31IL Column numbers: 467-469, 493-494
Loop 32IL Column numbers: 470-471, 490-492
Loop 33IL Column numbers: 472-476, 485-489
Loop 34HL Column numbers: 477-484
Loop 35IL Column numbers: 526-528, 539-540
Loop 36HL Column numbers: 530-537

Loop 1 Internal loop

Column numbers: 34-35, 88-90 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    CA*U-G   87

    
    UG*CCA    1

    
    CG*U-G    1

    
    GA*U-C    1

    
    UA*U-A    1

    
    Omitted sequenced and counts

    
    --*---    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_07039.3 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	24.35	2	1	Major groove platform
2	Motif group IL_81831.1 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	23.19	2	1	Intercalated cWS
3	Motif group IL_73452.2 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	22.59	3	1
4	Motif group IL_66635.5 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	16.78	2	1	Major groove intercalation
5	Motif group IL_33761.2 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	7.98	4	1
6	Motif group IL_84476.1 View motif instance in 3D Basepair signature: cWW-cWW	98.90	33.32	3	2	Multiple bulged bases
7	Motif group IL_42771.1 View motif instance in 3D Basepair signature: cWW-cWW	98.90	25.90	1	1	Multiple bulged bases
8	Motif group IL_26793.1 View motif instance in 3D Basepair signature: cWW-L-cWW	98.90	18.34	1	1	Single stack bend
9	Motif group IL_90729.1 View motif instance in 3D Basepair signature: cWW-L-cWW	98.90	13.73	2	1	Single stack bend
10	Motif group IL_16386.4 View motif instance in 3D Basepair signature: cWW-L-cWW	98.90	13.57	3	1

Loop 2 Internal loop

Column numbers: 36-38, 86-87 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    A-C*UU   49

    
    A-U*UU   12

    
    A-C*GA    9

    
    A-A*UU    3

    
    A-C*CU    3

    
    G-C*GU    2

    
    A-C*AC    1

    
    A-C*GC    1

    
    A-C*GG    1

    
    A-C*GU    1

    
    A-G*UU    1

    
    C-C*AG    1

    
    C-C*GA    1

    
    G-C*GA    1

    
    G-U*UC    1

    
    G-U*UU    1

    
    U-U*AG    1

    
    U-U*UU    1

    
    Omitted sequenced and counts

    
    AAC*U-    1

    
    ---*C-    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_07039.3 View motif instance in 3D Basepair signature: cWW-L-cWW	83.33	6.36	2	1	Major groove platform
2	Motif group IL_84476.1 View motif instance in 3D Basepair signature: cWW-cWW	80.00	2.99	2	2	Multiple bulged bases
3	Motif group IL_42771.1 View motif instance in 3D Basepair signature: cWW-cWW	8.89	-5.89	2	1	Multiple bulged bases
4	Motif group IL_73452.2 View motif instance in 3D Basepair signature: cWW-L-cWW	6.67	-7.04	3	1
5	Motif group IL_81831.1 View motif instance in 3D Basepair signature: cWW-L-cWW	6.67	-7.31	3	1	Intercalated cWS
6	Motif group IL_33761.2 View motif instance in 3D Basepair signature: cWW-L-cWW	6.67	-11.88	3	1
7	Motif group IL_66635.5 View motif instance in 3D Basepair signature: cWW-L-cWW	5.56	-12.88	2	1	Major groove intercalation
8	Motif group IL_00225.13 View motif instance in 3D Basepair signature: cWW-L-cWW	5.56	-20.67	2	1	Single bulged G
9	Motif group IL_26793.1 View motif instance in 3D Basepair signature: cWW-L-cWW	4.44	-14.57	3	1	Single stack bend
10	Motif group IL_16386.4 View motif instance in 3D Basepair signature: cWW-L-cWW	4.44	-17.49	5	1

Loop 3 Internal loop

Column numbers: 41-44, 80-83 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    GAAA*UGAC   34

    
    GAAA*UAAC   12

    
    CAAG*CAAA   10

    
    GAAG*UGAC    7

    
    GGAA*UGAC    7

    
    GAAG*CGAC    4

    
    CAAG*CGAA    2

    
    AAAU*CCAC    1

    
    CAAG*UAAA    1

    
    CAAU*AGAC    1

    
    GAAA*CGAC    1

    
    GAAA*UGGC    1

    
    GAAA*UGUC    1

    
    GAAG*AUGU    1

    
    GAAG*UAAC    1

    
    GACA*UAAC    1

    
    GAUA*CCAU    1

    
    GCAG*UAAC    1

    
    GGAG*CGAC    1

    
    GGCA*UGAC    1

    
    GGCG*UAAC    1

    
    GUAA*A-AG    1

    
    Omitted sequenced and counts

    
    ----*GGUA    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_09705.15 View motif instance in 3D Basepair signature: cWW-tSH-tHS-cWW	95.60	69.58	1	0	Double sheared
2	Motif group IL_80398.1 View motif instance in 3D Basepair signature: cWW-L-cSW-L-R-cWW	94.51	54.09	1	1	Minor groove platform
3	Motif group IL_41344.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	91.21	36.81	3	1
4	Motif group IL_48444.6 View motif instance in 3D Basepair signature: cWW-L-R-cWW-cWW	91.21	36.28	4	1
5	Motif group IL_10484.1 View motif instance in 3D Basepair signature: cWW-tSH-tHS-cWW	89.01	26.93	4	1	Double sheared
6	Motif group IL_84251.1 View motif instance in 3D Basepair signature: cWW-L-tHS-cWW	83.52	36.68	5	1
7	Motif group IL_99358.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	81.32	11.16	3	2
8	Motif group IL_25872.4 View motif instance in 3D Basepair signature: cWW-cWW-cWH-cWW	78.02	15.21	4	1
9	Motif group IL_77691.5 View motif instance in 3D Basepair signature: cWW-tSH-L-R-L-cWW	73.63	-5.56	2	1	UAA/GAN related
10	Motif group IL_85033.2 View motif instance in 3D Basepair signature: cWW-cWW-cWW-cWW	69.23	16.12	3	1	Tandem non-canonical cWW pairs

Loop 4 Internal loop

Column numbers: 48-49, 66-76 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    CG*UCUAGA----G   76

    
    CG*UCUUGA----G    7

    
    CA*UCUAGA----G    2

    
    UU*UGUGGACCUUA    1

    
    CA*UCUUGA----G    1

    
    CC*UGCCGU----G    1

    
    CG*UCUAGU----G    1

    
    CG*UCUGGA----G    1

    
    CG*CCCACA-----    1

    
    Omitted sequenced and counts

    
    --*UCUUGC----C    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_38186.6 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R	85.71	-7.16	3	2
2	Motif group IL_82706.1 View motif instance in 3D Basepair signature: cWW-L-R-L-cWW	8.79	-25.02	4	4
3	Motif group IL_25412.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L	1.10	-41.52	5	4	Major groove intercalation
4	Motif group IL_25463.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L	1.10	-93.60	5	3

Loop 5 Internal loop

Column numbers: 53-54, 60-62 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    GG*C-C   88

    
    GG*CAC    1

    
    AC*G-U    1

    
    GU*U-U    1

    
    UC*G-A    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_42771.1 View motif instance in 3D Basepair signature: cWW-cWW	98.91	24.24	3	1	Multiple bulged bases
2	Motif group IL_73452.2 View motif instance in 3D Basepair signature: cWW-L-cWW	98.91	22.65	3	1
3	Motif group IL_33761.2 View motif instance in 3D Basepair signature: cWW-L-cWW	98.91	19.92	1	1
4	Motif group IL_16386.4 View motif instance in 3D Basepair signature: cWW-L-cWW	98.91	13.28	3	1
5	Motif group IL_00225.13 View motif instance in 3D Basepair signature: cWW-L-cWW	98.91	11.88	1	1	Single bulged G
6	Motif group IL_31737.3 View motif instance in 3D Basepair signature: cWW-L-cWW	98.91	5.11	3	1	Stack and bulge
7	Motif group IL_84476.1 View motif instance in 3D Basepair signature: cWW-cWW	97.83	36.73	2	2	Multiple bulged bases
8	Motif group IL_81831.1 View motif instance in 3D Basepair signature: cWW-L-cWW	97.83	21.37	3	1	Intercalated cWS
9	Motif group IL_66635.5 View motif instance in 3D Basepair signature: cWW-L-cWW	97.83	20.23	2	1	Major groove intercalation
10	Motif group IL_90729.1 View motif instance in 3D Basepair signature: cWW-L-cWW	97.83	17.53	1	1	Single stack bend

Loop 6 Hairpin loop

Column numbers: 54-60 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    GUCUUUC   85

    
    CACCUUG    1

    
    CUUGUGG    1

    
    GGAUACC    1

    
    GGCUUUC    1

    
    GUCAUUC    1

    
    GUCCUUC    1

    
    UGGACCU    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance
1	Motif group HL_66103.1 View motif instance in 3D Basepair signature: cWW-F-F	97.83	4.35	5	3
2	Motif group HL_25967.2 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F	96.74	37.01	2	2
3	Motif group HL_50318.1 View motif instance in 3D Basepair signature: cWW-cSH-F-F	95.65	17.58	5	4
4	Motif group HL_53890.2 View motif instance in 3D Basepair signature: cWW-F-F-F	95.65	15.93	3	1
5	Motif group HL_48417.5 View motif instance in 3D Basepair signature: cWW-F-F	94.57	32.27	3	1
6	Motif group HL_86870.2 View motif instance in 3D Basepair signature: cWW-F-F-F	94.57	4.95	1	1
7	Motif group HL_56131.2 View motif instance in 3D Basepair signature: cWW-F-F	94.57	4.41	4	2
8	Motif group HL_65313.1 View motif instance in 3D Basepair signature: cWW-F-F-F	93.48	0.10	3	1
9	Motif group HL_20535.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F	93.48	-1.69	4	3
10	Motif group HL_08100.1 View motif instance in 3D Basepair signature: cWW-F-F-F	93.48	-2.19	4	2

Loop 7 Internal loop

Column numbers: 99-103, 375-377 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    U---U*A-A   56

    
    U---C*G-G   11

    
    C---C*G-G    4

    
    U---U*A-C    3

    
    U---U*A-G    3

    
    C---U*A-G    2

    
    C---U*G-G    2

    
    G---U*A-C    2

    
    U---C*G-A    2

    
    UAAGU*ACA    1

    
    A---U*A-C    1

    
    A---U*A-G    1

    
    C---U*A-A    1

    
    G---U*G-C    1

    
    U---U*A-U    1

    
    U---U*G-A    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_07039.3 View motif instance in 3D Basepair signature: cWW-L-cWW	98.91	20.44	2	1	Major groove platform
2	Motif group IL_84476.1 View motif instance in 3D Basepair signature: cWW-cWW	97.83	23.56	4	2	Multiple bulged bases
3	Motif group IL_42771.1 View motif instance in 3D Basepair signature: cWW-cWW	92.39	17.36	1	1	Multiple bulged bases
4	Motif group IL_66635.5 View motif instance in 3D Basepair signature: cWW-L-cWW	88.04	9.11	3	1	Major groove intercalation
5	Motif group IL_33761.2 View motif instance in 3D Basepair signature: cWW-L-cWW	88.04	4.88	4	1
6	Motif group IL_81831.1 View motif instance in 3D Basepair signature: cWW-L-cWW	86.96	15.01	4	1	Intercalated cWS
7	Motif group IL_00225.13 View motif instance in 3D Basepair signature: cWW-L-cWW	86.96	3.11	1	1	Single bulged G
8	Motif group IL_73452.2 View motif instance in 3D Basepair signature: cWW-L-cWW	72.83	14.10	4	1
9	Motif group IL_26793.1 View motif instance in 3D Basepair signature: cWW-L-cWW	71.74	6.43	3	1	Single stack bend
10	Motif group IL_90729.1 View motif instance in 3D Basepair signature: cWW-L-cWW	71.74	2.70	2	1	Single stack bend

Loop 8 Internal loop

Column numbers: 107-108, 369-371 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    UC*GUA   87

    
    UC*GAA    2

    
    AC*GUA    1

    
    GC*GUA    1

    
    UA*GUG    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_81831.1 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	98.08	0	0	Intercalated cWS
2	Motif group IL_73452.2 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	95.35	2	0
3	Motif group IL_90729.1 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	91.27	2	0	Single stack bend
4	Motif group IL_89505.4 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	89.91	0	0	Single bulged U
5	Motif group IL_48076.6 View motif instance in 3D Basepair signature: cWW-cSH-cWW	100.00	85.67	0	0	Major groove platform
6	Motif group IL_33761.2 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	80.65	2	0
7	Motif group IL_26793.1 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	74.85	1	0	Single stack bend
8	Motif group IL_42771.1 View motif instance in 3D Basepair signature: cWW-cWW	100.00	66.71	3	1	Multiple bulged bases
9	Motif group IL_07039.3 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	66.26	3	0	Major groove platform
10	Motif group IL_10569.1 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	62.07	3	1

Loop 9 Internal loop

Column numbers: 110-115, 343-367 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    A----C*C-----------------------U   87

    
    AG---C*GCCGAGCUCUCCCUCGGCCUUGUUC    1

    
    AGCCUG*U--------------------GUUC    1

    
    A----A*G-----------------------U    1

    
    G----C*C-----------------------C    1

    
    U----C*U-----------------------A    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_84476.1 View motif instance in 3D Basepair signature: cWW-cWW	3.26	-125.60	3	2	Multiple bulged bases
2	Motif group IL_56317.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-cWW	1.09	-259.64	8	7

Loop 10 Internal loop

Column numbers: 122-123, 313-336 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    UC*C----------------------A   80

    
    CC*C----------------------G    4

    
    AC*UAGGUGGUAAGCCGAGCUCUUCCU    1

    
    CC*C----------------------A    1

    
    CC*G----------------------G    1

    
    CG*U----------------------G    1

    
    CU*C----------------------G    1

    
    GU*A----------------------U    1

    
    UC*C----------------------G    1

    
    UU*C----------------------A    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_07039.3 View motif instance in 3D Basepair signature: cWW-L-cWW	98.91	-81.99	3	1	Major groove platform
2	Motif group IL_84476.1 View motif instance in 3D Basepair signature: cWW-cWW	9.78	-121.44	4	2	Multiple bulged bases
3	Motif group IL_42771.1 View motif instance in 3D Basepair signature: cWW-cWW	3.26	-127.26	2	1	Multiple bulged bases
4	Motif group IL_81831.1 View motif instance in 3D Basepair signature: cWW-L-cWW	2.17	-129.99	2	1	Intercalated cWS
5	Motif group IL_73452.2 View motif instance in 3D Basepair signature: cWW-L-cWW	2.17	-130.83	4	1
6	Motif group IL_66635.5 View motif instance in 3D Basepair signature: cWW-L-cWW	2.17	-132.36	3	1	Major groove intercalation
7	Motif group IL_00225.13 View motif instance in 3D Basepair signature: cWW-L-cWW	2.17	-139.85	2	1	Single bulged G
8	Motif group IL_31462.6 View motif instance in 3D Basepair signature: cWW-L-cWW	2.17	-159.96	2	1	Single bulged A
9	Motif group IL_33761.2 View motif instance in 3D Basepair signature: cWW-L-cWW	1.09	-134.87	3	1
10	Motif group IL_26793.1 View motif instance in 3D Basepair signature: cWW-L-cWW	1.09	-140.11	2	1	Single stack bend

Loop 11 Internal loop

Column numbers: 123-124, 311-313 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    CC*GAC   64

    
    CU*AAC   20

    
    UC*GAC    2

    
    CC*GGC    1

    
    CC*GUC    1

    
    CG*AUU    1

    
    CG*UAG    1

    
    GU*GCU    1

    
    UG*CAA    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_42771.1 View motif instance in 3D Basepair signature: cWW-cWW	100.00	62.86	3	0	Multiple bulged bases
2	Motif group IL_26793.1 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	62.68	1	0	Single stack bend
3	Motif group IL_90729.1 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	59.88	1	0	Single stack bend
4	Motif group IL_48076.6 View motif instance in 3D Basepair signature: cWW-cSH-cWW	100.00	55.66	1	0	Major groove platform
5	Motif group IL_07039.3 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	49.90	4	0	Major groove platform
6	Motif group IL_73452.2 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	38.99	2	1
7	Motif group IL_81831.1 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	36.17	3	1	Intercalated cWS
8	Motif group IL_33761.2 View motif instance in 3D Basepair signature: cWW-L-cWW	98.91	65.37	2	0
9	Motif group IL_10569.1 View motif instance in 3D Basepair signature: cWW-L-cWW	98.91	64.85	3	0
10	Motif group IL_51454.3 View motif instance in 3D Basepair signature: cWW-cSH-cWW	98.91	35.59	1	0	Minor groove platform

Loop 12 Internal loop

Column numbers: 127-133, 301-308 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    U--AGCG*UUAA---G   25

    
    U--GGCG*UUAA---G   23

    
    U--GGCG*UUAA---A   13

    
    U--GGCG*UCAA---G    9

    
    C--GGCG*UUAA---G    6

    
    U--AGCG*UCAA---G    5

    
    C--GGCG*UUAA---A    2

    
    U--GGCG*UUAA---C    2

    
    GCCGAAC*UAGUACGC    1

    
    A--UGUG*GUAC--CU    1

    
    G--GGAA*AGUA---C    1

    
    U--AGCG*UUAA---A    1

    
    U--GAAC*AGUA---G    1

    
    U--GGCG*CUAA---G    1

    
    U--UGCG*UUAA---G    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_50730.2 View motif instance in 3D Basepair signature: cWW-tSH-tHS-tHS-cWW	96.74	32.39	3	1	Triple sheared
2	Motif group IL_61440.1 View motif instance in 3D Basepair signature: cWW-tSH-tHS-tWS-cWW	96.74	8.30	4	2	Triple sheared
3	Motif group IL_66798.2 View motif instance in 3D Basepair signature: cWW-L-R-L-R-tHS-cWW	91.30	31.51	2	1	AAA cross-strand stack
4	Motif group IL_70627.3 View motif instance in 3D Basepair signature: cWW-L-R-tHW-cWW	77.17	-0.04	5	1	UAA/GAN related
5	Motif group IL_89021.2 View motif instance in 3D Basepair signature: cWW-L-R-L-R-tHS-cWW	60.87	-2.13	3.5	2	UAA/GAN
6	Motif group IL_94351.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-tHS-cWW	53.26	1.15	4	2
7	Motif group IL_67780.1 View motif instance in 3D Basepair signature: cWW-cSH-L-R-L-L-R-L	28.26	-24.22	7	4
8	Motif group IL_38634.5 View motif instance in 3D Basepair signature: cWW-cWH-L-R-cWW	22.83	-6.03	5	2	cWH basepair and non-canonical AC
9	Motif group IL_21001.1 View motif instance in 3D Basepair signature: cWW-L-R-tHW-L-cWW	22.83	-30.17	7	3
10	Motif group IL_68574.4 View motif instance in 3D Basepair signature: cWW-tHH-tHS-cWW	5.43	-60.20	5	3

Loop 13 Internal loop

Column numbers: 135-136, 297-299 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    GU*A-C   84

    
    AC*GCU    1

    
    AU*A-U    1

    
    GA*C-C    1

    
    GA*U-C    1

    
    GC*A-C    1

    
    GC*G-C    1

    
    GU*A-U    1

    
    UU*A-C    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_84476.1 View motif instance in 3D Basepair signature: cWW-cWW	98.91	32.74	2	2	Multiple bulged bases
2	Motif group IL_07039.3 View motif instance in 3D Basepair signature: cWW-L-cWW	97.83	14.62	3	1	Major groove platform
3	Motif group IL_00225.13 View motif instance in 3D Basepair signature: cWW-L-cWW	97.83	8.90	2	1	Single bulged G
4	Motif group IL_42771.1 View motif instance in 3D Basepair signature: cWW-cWW	96.74	22.57	3	1	Multiple bulged bases
5	Motif group IL_33761.2 View motif instance in 3D Basepair signature: cWW-L-cWW	96.74	18.08	2	1
6	Motif group IL_66635.5 View motif instance in 3D Basepair signature: cWW-L-cWW	96.74	16.22	2	1	Major groove intercalation
7	Motif group IL_73452.2 View motif instance in 3D Basepair signature: cWW-L-cWW	95.65	21.24	3	1
8	Motif group IL_81831.1 View motif instance in 3D Basepair signature: cWW-L-cWW	95.65	20.95	5	1	Intercalated cWS
9	Motif group IL_16386.4 View motif instance in 3D Basepair signature: cWW-L-cWW	95.65	10.50	5	1
10	Motif group IL_31737.3 View motif instance in 3D Basepair signature: cWW-L-cWW	95.65	2.71	2	1	Stack and bulge

Loop 14 Internal loop

Column numbers: 137-142, 293-296 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    G----U*C--C   42

    
    G----U*U--C   13

    
    G----C*C--C   11

    
    A----C*A--C    8

    
    G----C*A--C    8

    
    G----U*C--U    2

    
    ACUUAU*AUAU    1

    
    A----C*G--U    1

    
    A----U*A--C    1

    
    A----U*G--C    1

    
    A----U*U--C    1

    
    C----A*U--G    1

    
    C----G*U--U    1

    
    G----U*A--C    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_84476.1 View motif instance in 3D Basepair signature: cWW-cWW	84.78	-0.09	2	2	Multiple bulged bases
2	Motif group IL_07039.3 View motif instance in 3D Basepair signature: cWW-L-cWW	5.43	-10.30	3	1	Major groove platform
3	Motif group IL_73452.2 View motif instance in 3D Basepair signature: cWW-L-cWW	3.26	-11.45	2	1
4	Motif group IL_42771.1 View motif instance in 3D Basepair signature: cWW-cWW	3.26	-12.36	4	1	Multiple bulged bases
5	Motif group IL_81831.1 View motif instance in 3D Basepair signature: cWW-L-cWW	3.26	-12.59	2	1	Intercalated cWS
6	Motif group IL_66635.5 View motif instance in 3D Basepair signature: cWW-L-cWW	3.26	-17.50	2	1	Major groove intercalation
7	Motif group IL_26793.1 View motif instance in 3D Basepair signature: cWW-L-cWW	3.26	-22.32	2	1	Single stack bend
8	Motif group IL_90729.1 View motif instance in 3D Basepair signature: cWW-L-cWW	3.26	-23.50	2	1	Single stack bend
9	Motif group IL_33761.2 View motif instance in 3D Basepair signature: cWW-L-cWW	3.26	-23.62	2	1
10	Motif group IL_16386.4 View motif instance in 3D Basepair signature: cWW-L-cWW	3.26	-25.03	3	1

Loop 15 Internal loop

Column numbers: 142-148, 287-293 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    CUAGUAA*UGAAACA   11

    
    UUAGUAA*UGAAACU    9

    
    UUAGUAA*UGAAACC    8

    
    UUAGUAG*UGAAACC    8

    
    UUAGUAG*CGAAAAC    6

    
    UUAGUAA*CGAAACC    5

    
    CUAGUAA*UGAAAAC    3

    
    CUAGUAA*UGAACCA    3

    
    CUAGUAG*CGAAAAC    3

    
    CUAGUAG*UGAAACC    2

    
    UCAGUAA*UGAAACU    2

    
    UUAGUAA*UGAAAAC    2

    
    UUAGUAA*UGAAACA    2

    
    UUAGUAG*CGAACAC    2

    
    UUAGUAG*UGAAAAC    2

    
    UUAGUAG*UGAAACU    2

    
    CGAGUAA*UGAAAAA    1

    
    CUAGAAA*UGGAAAG    1

    
    CUAGUAA*CGAAACA    1

    
    CUAGUAA*UGAAACC    1

    
    CUAGUAA*UGAACAC    1

    
    CUAGUAA*UGGAAAC    1

    
    GUGUGAA*UAACACU    1

    
    UCAGUAA*UGAAAAC    1

    
    UGAGUAG*UGAAAAC    1

    
    UUAGUAA*CGAAAAC    1

    
    UUAGUAA*CGAAACU    1

    
    UUAGUAA*CGAAAGC    1

    
    UUAGUAA*UGAAACG    1

    
    UUAGUAA*UGAAAGC    1

    
    UUAGUAA*UGAAAUC    1

    
    UUAGUAG*CGAAAGC    1

    
    UUAGUAG*CGAACGC    1

    
    UUAGUAG*CGGAAAC    1

    
    UUAGUAG*GGAAACC    1

    
    UUAGUAG*UGAAAGC    1

    
    UUGGAAA*UGGAAGA    1

    
    ACAUGAA*U-AGUAU    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_26307.2 View motif instance in 3D Basepair signature: cWW-tSH-tHH-cSH-tWH-tHS-cWW	96.74	25.54	3	1	7x6 Sarcin-Ricin; G-bulge
2	Motif group IL_29198.2 View motif instance in 3D Basepair signature: cWW-cWW-L-R-cSH-R-tWH-tHS-cWW	71.74	3.50	6	4	7x7 Sarcin-Ricin with intercalated A; G-bulge
3	Motif group IL_16458.4 View motif instance in 3D Basepair signature: cWW-L-R-L-R-cSH-tWH-tHS-cWW	27.17	-15.32	5	2	Sarcin-Ricin target in LSU H95; G-bulge
4	Motif group IL_24254.1 View motif instance in 3D Basepair signature: cWW-cWW-tHH-cSH-tWH-tHS-cWW	19.57	-6.20	5	2	7x6 Sarcin-Ricin with UU cWW pair; G-bulge
5	Motif group IL_61286.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-tWH-L-tHS-cWW	3.26	-21.36	7	3	8x6 Sarcin-Ricin with inserted A; G-bulge
6	Motif group IL_88116.2 View motif instance in 3D Basepair signature: cWW-tSH-L-R-L-R-L-R-cWW-cWW	1.09	-24.55	7	5
7	Motif group IL_58126.1 View motif instance in 3D Basepair signature: cWW-L-R-L-R-L-R-L-R-L-R-L-cWW	1.09	-33.69	8	5
8	Motif group IL_69543.3 View motif instance in 3D Basepair signature: cWW-tSH-L-R-tSS-tHS-L-R-cWW	1.09	-50.05	8	5
9	Motif group IL_28026.3 View motif instance in 3D Basepair signature: cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW	1.09	-63.62	7	5
10	Motif group IL_04021.2 View motif instance in 3D Basepair signature: cWW-L-R-tSH-tSH-tHS-cWW-cWW	1.09	-69.39	7	5	Triple sheared with non-canonical cWW

Loop 16 Internal loop

Column numbers: 161-168, 266-274 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    UUCG-UAG*CA--GCACG   58

    
    CUCG-UAG*CA--GCACG   12

    
    UUCG-UAG*CA--GCACA    9

    
    UUCG-UCG*CA--GCACA    4

    
    UUCG-UAG*CG--GCACG    3

    
    GUGG-UAG*CACCCUGGC    1

    
    GUGG-UAG*CAUCCUGGC    1

    
    UGCUGUAA*UA--CCUGA    1

    
    CUCG-UAG*CA--ACACG    1

    
    UGCU-UAA*AA--ACCUG    1

    
    UUCG-UAA*CA--GCACG    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_68405.1 View motif instance in 3D Basepair signature: cWW-cSS-L-tWH-tHW-cWW-cWW	1.09	-27.52	7	5	Kink-turn related

Loop 17 Internal loop

Column numbers: 171-172, 254-263 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    GA*GUGC---AAC   82

    
    GA*GUGC---AAA    3

    
    CU*CCAGGACGAC    1

    
    CU*CCAGGGAAAC    1

    
    CA*UUGG---UUC    1

    
    GA*GUGC---AGC    1

    
    GA*GUGC---AUU    1

    
    GA*GUGU---AAC    1

    
    GC*UGGU----UU    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_46086.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R	89.13	-4.47	6	2

Loop 18 Internal loop

Column numbers: 179-181, 246-247 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    U-G*CA   44

    
    C-G*CG   24

    
    G-A*UC   14

    
    A-A*UU    3

    
    GUU*UC    2

    
    A-G*CU    1

    
    G-U*AU    1

    
    U-G*CG    1

    
    U-G*CU    1

    
    U-G*UA    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_07039.3 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	20.81	2	1	Major groove platform
2	Motif group IL_42771.1 View motif instance in 3D Basepair signature: cWW-cWW	98.91	24.40	3	1	Multiple bulged bases
3	Motif group IL_84476.1 View motif instance in 3D Basepair signature: cWW-cWW	97.83	32.79	3	2	Multiple bulged bases
4	Motif group IL_81831.1 View motif instance in 3D Basepair signature: cWW-L-cWW	97.83	22.85	2	1	Intercalated cWS
5	Motif group IL_73452.2 View motif instance in 3D Basepair signature: cWW-L-cWW	96.74	22.54	3	1
6	Motif group IL_66635.5 View motif instance in 3D Basepair signature: cWW-L-cWW	96.74	16.56	2	1	Major groove intercalation
7	Motif group IL_33761.2 View motif instance in 3D Basepair signature: cWW-L-cWW	96.74	7.52	4	1
8	Motif group IL_26793.1 View motif instance in 3D Basepair signature: cWW-L-cWW	95.65	16.96	1	1	Single stack bend
9	Motif group IL_90729.1 View motif instance in 3D Basepair signature: cWW-L-cWW	95.65	14.61	2	1	Single stack bend
10	Motif group IL_16386.4 View motif instance in 3D Basepair signature: cWW-L-cWW	95.65	12.52	3	1

Loop 19 4-way junction loop

Column numbers: 182-184, 217-219, 229-232, 244-245 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    GCC*GGG*CACG*CC   67

    
    GCG*CGG*CACG*CC   14

    
    GCU*GGG*CACG*CC    4

    
    GCC*GGG*CAUG*CC    2

    
    GGC*GUG*CCAG*CC    2

    
    GCC*GGG*CAAG*CC    1

    
    GCC*GGG*CGCG*CC    1

    
    -CC*GGG*CAAG*CC    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group J4_10571.1 View motif instance in 3D Basepair signature: cWW-F-F-F-cWW-F-F-cWW-F	2.17	-28.20	10	4

Loop 20 Internal loop

Column numbers: 189-196, 211-212 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    GAACUCCU*AC   23

    
    GAACUCCC*AC   14

    
    GAACCCCU*AC   10

    
    GAACACCU*AC    6

    
    GAAUCCCU*AC    6

    
    GAACACCC*AC    4

    
    GAAUUCCU*AC    4

    
    GAACCCCC*AC    2

    
    GAACUCCG*AC    2

    
    GACCCCCC*AC    2

    
    GACCUCCC*AC    2

    
    GACCUCCU*AC    2

    
    GAGCUCCC*AC    2

    
    GAAACCCC*AC    1

    
    GAACCCCA*AC    1

    
    GAACCCCC*GC    1

    
    GAACUCCU*GC    1

    
    GACUCCCC*AC    1

    
    GAGCUCCU*AC    1

    
    GAUCCCCC*GC    1

    
    GAUCCCCU*AC    1

    
    GAUCUCCC*AC    1

    
    GAUUUCCC*AC    1

    
    GGCUUCCU*AC    1

    
    GAACAAC-*GC    1

    
    GAAUCAC-*GC    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_26598.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L-R	78.26	9.70	4	3
2	Motif group IL_55917.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R	66.30	3.05	6	3
3	Motif group IL_27393.10 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L-R	59.78	5.11	7	3
4	Motif group IL_04650.2 View motif instance in 3D Basepair signature: cWW-cWW-L-cWW-L-R-L-L-cSH	20.65	-17.69	6	3
5	Motif group IL_33711.1 View motif instance in 3D Basepair signature: cWW-cSH-cWW-L-L-R-L	9.78	-24.26	6	4	Minor groove platform
6	Motif group IL_46112.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L	4.35	-25.19	7	4
7	Motif group IL_88017.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R-L	2.17	-41.36	4	3
8	Motif group IL_49714.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L	2.17	-43.59	4	3	Major groove intercalation
9	Motif group IL_46086.1 View motif instance in 3D Basepair signature: cWW-L-cWW-L-L-R	2.17	-45.10	7	3

Loop 21 Hairpin loop

Column numbers: 201-206 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    GGUAAC   79

    
    GGUGAC    7

    
    GGCAAC    3

    
    GGCGAC    2

    
    GGAGAC    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group HL_93535.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	100.00	90.61	2	0
2	Motif group HL_04783.2 View motif instance in 3D Basepair signature: cWW-F-F-F	100.00	82.39	1	0
3	Motif group HL_53890.2 View motif instance in 3D Basepair signature: cWW-F-F-F	100.00	78.46	2	0
4	Motif group HL_37824.7 View motif instance in 3D Basepair signature: cWW-F-F-F-F	100.00	72.53	0	0	GNRA
5	Motif group HL_50006.2 View motif instance in 3D Basepair signature: cWW-F-F	100.00	62.27	3	1
6	Motif group HL_52953.3 View motif instance in 3D Basepair signature: cWW-F-F-F-F	100.00	59.95	1	1
7	Motif group HL_75660.5 View motif instance in 3D Basepair signature: cWW-F	100.00	46.76	1	1
8	Motif group HL_13963.3 View motif instance in 3D Basepair signature: cWW-F-F	100.00	36.44	2	2
9	Motif group HL_65794.5 View motif instance in 3D Basepair signature: cWW-F-F-F-F	100.00	23.42	1	1	Pseudoknot geometry
10	Motif group HL_59843.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	100.00	23.14	4	2

Loop 22 Hairpin loop

Column numbers: 221-227 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    CCAAAAG   47

    
    CCGAAAG   43

    
    CCGCAAG    2

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group HL_10540.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	100.00	47.92	2	2
2	Motif group HL_87553.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	100.00	47.60	3	2
3	Motif group HL_53890.2 View motif instance in 3D Basepair signature: cWW-F-F-F	100.00	39.94	2	1
4	Motif group HL_28075.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	100.00	23.66	2	2
5	Motif group HL_10453.3 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	100.00	21.70	4	2	tRNA anticodon loop
6	Motif group HL_80922.2 View motif instance in 3D Basepair signature: cWW-tSH-F	97.83	32.73	2	2
7	Motif group HL_04783.2 View motif instance in 3D Basepair signature: cWW-F-F-F	97.83	30.18	2	2
8	Motif group HL_65794.5 View motif instance in 3D Basepair signature: cWW-F-F-F-F	97.83	20.15	3	1	Pseudoknot geometry
9	Motif group HL_50006.2 View motif instance in 3D Basepair signature: cWW-F-F	97.83	18.54	2	2
10	Motif group HL_30068.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F	97.83	4.38	4	2

Loop 23 Hairpin loop

Column numbers: 235-241 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    CUAAC-G   21

    
    UCA---C   12

    
    CUCAC-G    6

    
    CACAC-G    5

    
    CGAAU-G    4

    
    CAAAC-G    3

    
    CACAU-G    3

    
    CUUAC-G    3

    
    CUC-U-G    3

    
    UUUACAG    2

    
    CGGAC-G    2

    
    CUGAC-G    2

    
    CAC-U-G    2

    
    UUGACAG    1

    
    CAACU-G    1

    
    CAAUC-G    1

    
    CAGAU-G    1

    
    CCAAC-G    1

    
    CCAAU-G    1

    
    CGAAC-G    1

    
    CGCAA-G    1

    
    CGGAU-G    1

    
    CUAAC-U    1

    
    CUACC-G    1

    
    CUAGC-G    1

    
    CUCAU-G    1

    
    CUGAA-G    1

    
    CUGGC-G    1

    
    CUGUC-G    1

    
    CUUGU-G    1

    
    UUAGC-A    1

    
    UCACA--    1

    
    UUA-U-G    1

    
    UUC-C-A    1

    
    U---C-A    1

    
    U---C-U    1

    
    U---U-U    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group HL_56334.1 View motif instance in 3D Basepair signature: cWW-F	90.22	11.19	2.5	2	Mini UNCG
2	Motif group HL_53890.2 View motif instance in 3D Basepair signature: cWW-F-F-F	73.91	0.39	2	2
3	Motif group HL_70782.2 View motif instance in 3D Basepair signature: cWW-F	69.57	14.34	3	2
4	Motif group HL_75660.5 View motif instance in 3D Basepair signature: cWW-F	68.48	-341.87	2	1
5	Motif group HL_04783.2 View motif instance in 3D Basepair signature: cWW-F-F-F	63.04	7.48	2	2
6	Motif group HL_50006.2 View motif instance in 3D Basepair signature: cWW-F-F	60.87	-10.61	3	2
7	Motif group HL_56131.2 View motif instance in 3D Basepair signature: cWW-F-F	59.78	4.31	3	2
8	Motif group HL_48778.2 View motif instance in 3D Basepair signature: cWW-F	56.52	-6.73	1	1	Mini UNCG
9	Motif group HL_37824.7 View motif instance in 3D Basepair signature: cWW-F-F-F-F	56.52	-18.55	1	1	GNRA
10	Motif group HL_93535.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	56.52	-361.13	2	2

Loop 24 Internal loop

Column numbers: 397-406, 509-516 - View nucleotides in PDB file(s)

    Scored sequences and counts

    
    GGC--UAAGG*CUAU-GCC   71

    
    GGC--UAAGG*CUAC-GCC   12

    
    GGC--UAAGG*CUAU-GUC    4

    
    CCCACGAAGG*CUAGUGGG    1

    
    GAC--UAAGG*CUAU-GUC    1

    
    GGA--UAAGG*CUAU-GCC    1

    
    GGC--UCCGG*CUAC-GCC    1

    
    CGC--GAAGG*CUA--GCG    1

No Matches Found View All Results for this Loop

Loop 25 3-way junction loop

Column numbers: 410-411, 460-461, 499-505 - View nucleotides in PDB file(s)

    Scored sequences and counts

    
    CC*GG*UAAAAAG   79

    
    CC*GG*UAAAAAA    6

    
    CC*GG*CAAAAAG    2

    
    CC*GG*UAAAAAC    1

    
    CC*GU*UAAAAAG    1

    
    UC*GA*UAAAAAA    1

    
    UC*GA*UAAAAAG    1

    
    UC*GG*UAAAAAG    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group J3_10118.1 View motif instance in 3D Basepair signature: 7	90.22	5.34	7	3
2	Motif group J3_70599.1 View motif instance in 3D Basepair signature: 11	3.26	-11.70	5	2

Loop 26 Internal loop

Column numbers: 415-422, 448-456 - View nucleotides in PDB file(s)

    Scored sequences and counts

    
    CAGGUACC*GAUCU-GAG   85

    
    AAGGUACC*GAUCU-GAU    2

    
    CAGGUACC*GAUCUUGAG    1

    
    CAGGUACA*GAUCU-GAG    1

    
    CAGGUACC*AAUCU-GAG    1

    
    UAGGUACC*GAUCU-GAG    1

    
    CAGGUACC*GAUCU-GA-    1

No Matches Found View All Results for this Loop

Loop 27 Internal loop

Column numbers: 426-427, 442-444 - View nucleotides in PDB file(s)

    Scored sequences and counts

    
    AG*C-U   86

    
    AC*G-U    2

    
    GG*C-C    2

    
    AG*CUU    1

    
    AA*C-U    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_84476.1 View motif instance in 3D Basepair signature: cWW-cWW	100.00	34.51	2	2	Multiple bulged bases
2	Motif group IL_07039.3 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	17.86	2	1	Major groove platform
3	Motif group IL_33761.2 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	8.42	3	1
4	Motif group IL_42771.1 View motif instance in 3D Basepair signature: cWW-cWW	98.91	24.24	3	1	Multiple bulged bases
5	Motif group IL_73452.2 View motif instance in 3D Basepair signature: cWW-L-cWW	98.91	22.51	3	1
6	Motif group IL_81831.1 View motif instance in 3D Basepair signature: cWW-L-cWW	98.91	22.25	4	1	Intercalated cWS
7	Motif group IL_16386.4 View motif instance in 3D Basepair signature: cWW-L-cWW	98.91	13.39	3	1
8	Motif group IL_00225.13 View motif instance in 3D Basepair signature: cWW-L-cWW	98.91	7.55	1	1	Single bulged G
9	Motif group IL_31737.3 View motif instance in 3D Basepair signature: cWW-L-cWW	98.91	2.38	1	1	Stack and bulge
10	Motif group IL_26793.1 View motif instance in 3D Basepair signature: cWW-L-cWW	97.83	16.71	1	1	Single stack bend

Loop 28 Internal loop

Column numbers: 427-428, 440-442 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    GG*CAC   87

    
    CG*GAG    2

    
    GG*AAC    2

    
    AG*CAC    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_33761.2 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	97.91	0
2	Motif group IL_48076.6 View motif instance in 3D Basepair signature: cWW-cSH-cWW	100.00	97.47	0	Major groove platform
3	Motif group IL_51454.3 View motif instance in 3D Basepair signature: cWW-cSH-cWW	100.00	97.12	0	Minor groove platform
4	Motif group IL_42771.1 View motif instance in 3D Basepair signature: cWW-cWW	100.00	95.27	2	Multiple bulged bases
5	Motif group IL_26793.1 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	94.13	3	Single stack bend
6	Motif group IL_31462.6 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	90.32	0	Single bulged A
7	Motif group IL_90729.1 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	89.55	2	Single stack bend
8	Motif group IL_66635.5 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	86.68	1	Major groove intercalation
9	Motif group IL_31737.3 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	84.87	2	Stack and bulge
10	Motif group IL_07039.3 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	72.68	3	Major groove platform

Loop 29 Hairpin loop

Column numbers: 429-439 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    UAACACG-CGA   35

    
    UAACAAG-CGA   13

    
    UAACAAG-AGA    9

    
    UAACACG-AGA    8

    
    UAACAUG-CGA    6

    
    UAACACG-GGA    4

    
    UAACACG-UGA    4

    
    UAACCUUCAGA    2

    
    UAACAUG-AGA    2

    
    UAACAUG-UGA    2

    
    CAACAAG-CGA    1

    
    CAACACG-CGA    1

    
    CAACAUG-CGA    1

    
    GAACAUG-CGA    1

    
    UAACAAG-UGA    1

    
    UAACACG-CGC    1

    
    UAACACG-CGU    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group HL_04641.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	70.65	15.76	4	3
2	Motif group HL_93438.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	70.65	-0.35	4	4
3	Motif group HL_67407.5 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	46.74	-8.48	5	3
4	Motif group HL_50779.4 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F	15.22	-7.00	5	3
5	Motif group HL_02483.1 View motif instance in 3D Basepair signature: cWW-tWH-F-cSH-F-F-F	8.70	-14.39	5	4
6	Motif group HL_55436.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	8.70	-22.19	5	5
7	Motif group HL_80411.1 View motif instance in 3D Basepair signature: cWW-F-cSH-F-F-F-F	4.35	-39.17	6	5	tRNA D-loop
8	Motif group HL_49941.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	2.17	-35.58	7	5	tRNA D-loop
9	Motif group HL_45785.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-cSH-F-F	2.17	-75.49	8	6
10	Motif group HL_50418.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F	2.17	-5649.39	5	3

Loop 30 Internal loop

Column numbers: 463-465, 496-497 - View nucleotides in PDB file(s)

    Scored sequences and counts

    
    A-C*GU   75

    
    A-U*AU    4

    
    A-U*GU    4

    
    G-C*GC    3

    
    AUU*GU    1

    
    A-C*AU    1

    
    A-C*GG    1

    
    C-C*AG    1

    
    C-U*AG    1

    
    G-C*GU    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_84476.1 View motif instance in 3D Basepair signature: cWW-cWW	98.91	31.48	2	2	Multiple bulged bases
2	Motif group IL_07039.3 View motif instance in 3D Basepair signature: cWW-L-cWW	97.83	14.09	3	1	Major groove platform
3	Motif group IL_42771.1 View motif instance in 3D Basepair signature: cWW-cWW	96.74	21.55	3	1	Multiple bulged bases
4	Motif group IL_73452.2 View motif instance in 3D Basepair signature: cWW-L-cWW	92.39	20.45	3	1
5	Motif group IL_81831.1 View motif instance in 3D Basepair signature: cWW-L-cWW	91.30	20.16	5	1	Intercalated cWS
6	Motif group IL_33761.2 View motif instance in 3D Basepair signature: cWW-L-cWW	91.30	16.22	2	1
7	Motif group IL_66635.5 View motif instance in 3D Basepair signature: cWW-L-cWW	91.30	14.79	2	1	Major groove intercalation
8	Motif group IL_16386.4 View motif instance in 3D Basepair signature: cWW-L-cWW	91.30	9.27	5	1
9	Motif group IL_00225.13 View motif instance in 3D Basepair signature: cWW-L-cWW	91.30	7.59	2	1	Single bulged G
10	Motif group IL_31737.3 View motif instance in 3D Basepair signature: cWW-L-cWW	91.30	1.29	2	1	Stack and bulge

Loop 31 Internal loop

Column numbers: 467-469, 493-494 - View nucleotides in PDB file(s)

    Scored sequences and counts

    
    G-G*CC   51

    
    A-G*CU   12

    
    G-A*UC   12

    
    G-G*CU    5

    
    G-G*UC    5

    
    GUG*CC    2

    
    A-G*CC    2

    
    A-C*GU    1

    
    G-A*CC    1

    
    G-G*UU    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_07039.3 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	16.54	2	1	Major groove platform
2	Motif group IL_84476.1 View motif instance in 3D Basepair signature: cWW-cWW	98.91	32.39	2	2	Multiple bulged bases
3	Motif group IL_42771.1 View motif instance in 3D Basepair signature: cWW-cWW	95.65	21.68	3	1	Multiple bulged bases
4	Motif group IL_73452.2 View motif instance in 3D Basepair signature: cWW-L-cWW	95.65	21.27	3	1
5	Motif group IL_81831.1 View motif instance in 3D Basepair signature: cWW-L-cWW	95.65	21.17	3	1	Intercalated cWS
6	Motif group IL_33761.2 View motif instance in 3D Basepair signature: cWW-L-cWW	89.13	13.14	1	1
7	Motif group IL_00225.13 View motif instance in 3D Basepair signature: cWW-L-cWW	89.13	7.31	1	1	Single bulged G
8	Motif group IL_66635.5 View motif instance in 3D Basepair signature: cWW-L-cWW	84.78	17.77	2	1	Major groove intercalation
9	Motif group IL_90729.1 View motif instance in 3D Basepair signature: cWW-L-cWW	84.78	15.85	1	1	Single stack bend
10	Motif group IL_26793.1 View motif instance in 3D Basepair signature: cWW-L-cWW	84.78	15.22	1	1	Single stack bend

Loop 32 Internal loop

Column numbers: 470-471, 490-492 - View nucleotides in PDB file(s)

    Scored sequences and counts

    
    GG*CGC   43

    
    GA*UGC   27

    
    GG*UGC    9

    
    AA*UGU    2

    
    GA*UGU    2

    
    GG*CGU    2

    
    GU*AGC    2

    
    UA*UGA    2

    
    GA*CGC    1

    
    GG*CAC    1

    
    GG*CCC    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_00225.13 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	96.44	0	0	Single bulged G
2	Motif group IL_66635.5 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	93.14	0	0	Major groove intercalation
3	Motif group IL_16386.4 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	92.28	3	0
4	Motif group IL_48076.6 View motif instance in 3D Basepair signature: cWW-cSH-cWW	100.00	81.73	0	0	Major groove platform
5	Motif group IL_07039.3 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	80.51	3	0	Major groove platform
6	Motif group IL_90729.1 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	62.25	3	0	Single stack bend
7	Motif group IL_81831.1 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	52.95	5	1	Intercalated cWS
8	Motif group IL_73452.2 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	50.55	3	1
9	Motif group IL_33761.2 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	49.77	1	1
10	Motif group IL_42771.1 View motif instance in 3D Basepair signature: cWW-cWW	100.00	43.03	3	1	Multiple bulged bases

Loop 33 Internal loop

Column numbers: 472-476, 485-489 - View nucleotides in PDB file(s)

    Scored sequences and counts

    
    C---U*A---G   60

    
    G---U*A---C   14

    
    C---C*G---G    2

    
    GCACU*GAUGC    1

    
    GCGCU*GACGU    1

    
    C---U*G---G    1

    
    G---U*G---C    1

    
    U---C*A---U    1

    
    U---U*A---A    1

    
    U---U*A---G    1

    
    Omitted sequenced and counts

    
    C---U*----G    7

    
    C---C*----G    2

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_84476.1 View motif instance in 3D Basepair signature: cWW-cWW	96.39	25.76	2	2	Multiple bulged bases
2	Motif group IL_42771.1 View motif instance in 3D Basepair signature: cWW-cWW	96.39	12.95	2	1	Multiple bulged bases
3	Motif group IL_07039.3 View motif instance in 3D Basepair signature: cWW-L-cWW	96.39	6.94	2	1	Major groove platform
4	Motif group IL_73452.2 View motif instance in 3D Basepair signature: cWW-L-cWW	93.98	10.83	3	1
5	Motif group IL_81831.1 View motif instance in 3D Basepair signature: cWW-L-cWW	93.98	9.87	4	1	Intercalated cWS
6	Motif group IL_33761.2 View motif instance in 3D Basepair signature: cWW-L-cWW	93.98	-3.78	3	1
7	Motif group IL_00225.13 View motif instance in 3D Basepair signature: cWW-L-cWW	93.98	-6.67	1	1	Single bulged G
8	Motif group IL_66635.5 View motif instance in 3D Basepair signature: cWW-L-cWW	92.77	5.06	2	1	Major groove intercalation
9	Motif group IL_26793.1 View motif instance in 3D Basepair signature: cWW-L-cWW	92.77	2.94	1	1	Single stack bend
10	Motif group IL_90729.1 View motif instance in 3D Basepair signature: cWW-L-cWW	92.77	1.17	1	1	Single stack bend

Loop 34 Hairpin loop

Column numbers: 477-484 - View nucleotides in PDB file(s)

    Scored sequences and counts

    
    UCUUUAAA   35

    
    UCUAUAAA   25

    
    UCUGUAAA   15

    
    UCUAUCAA    8

    
    GCUUUACA    2

    
    UCUAUCCA    2

    
    CCUUUAAA    1

    
    UCUAUCAG    1

    
    UCUAUCUU    1

    
    UCUCUAAA    1

    
    UCUUUAAG    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group HL_77082.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	98.91	54.96	2	2	Pseudoknot geometry
2	Motif group HL_33983.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	96.74	42.85	4	2
3	Motif group HL_87553.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	96.74	33.31	3	2
4	Motif group HL_50537.6 View motif instance in 3D Basepair signature: cWW-F-F-F	95.65	45.11	3	1	tRNA anticodon loop with synthetase
5	Motif group HL_15802.1 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F	93.48	11.65	5	3
6	Motif group HL_37344.1 View motif instance in 3D Basepair signature: cWW-F-F	92.39	9.72	4	2
7	Motif group HL_99748.1 View motif instance in 3D Basepair signature: cWW-F-F-cSH	91.30	11.09	5	3	Other HL
8	Motif group HL_73266.9 View motif instance in 3D Basepair signature: cWW-F-F-cSW-cSH-F	84.78	19.26	2	1
9	Motif group HL_18565.1 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F-F	82.61	6.33	5	3
10	Motif group HL_64690.6 View motif instance in 3D Basepair signature: cWW-cSW-F-F-F-F	81.52	8.29	4	2

Loop 35 Internal loop

Column numbers: 526-528, 539-540 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    GAC*GC   88

    
    CAG*CU    1

    
    GGG*CC    1

    
    UAG*CG    1

    
    UCG*CA    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group IL_33761.2 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	97.99	1	0
2	Motif group IL_42771.1 View motif instance in 3D Basepair signature: cWW-cWW	100.00	94.59	4	0	Multiple bulged bases
3	Motif group IL_26793.1 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	94.54	2	0	Single stack bend
4	Motif group IL_48076.6 View motif instance in 3D Basepair signature: cWW-cSH-cWW	100.00	94.50	0	0	Major groove platform
5	Motif group IL_31462.6 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	93.88	0	0	Single bulged A
6	Motif group IL_90729.1 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	93.32	1	0	Single stack bend
7	Motif group IL_66635.5 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	92.25	1	0	Major groove intercalation
8	Motif group IL_31737.3 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	85.77	2	0	Stack and bulge
9	Motif group IL_07039.3 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	72.66	4	0	Major groove platform
10	Motif group IL_73452.2 View motif instance in 3D Basepair signature: cWW-L-cWW	100.00	70.77	1	1

Loop 36 Hairpin loop

Column numbers: 530-537 - This loop does not map to nucleotides in a 3D structure with xyz coordinates.

    Scored sequences and counts

    
    GGAGG-CC   82

    
    GGAGG-UC    4

    
    GGUGGGCC    2

    
    GGAGG-CA    1

    
    GGGGA-UC    1

    
    GGAG--CC    1

    
    ---GG-AU    1

Click on headings to reorder table - View All Results for this Loop

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group HL_97917.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F	96.74	51.40	1	1
2	Motif group HL_51447.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	94.57	-115.59	3	1
3	Motif group HL_89893.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	90.22	8.40	4	2
4	Motif group HL_22622.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	6.52	-115.21	5	3
5	Motif group HL_59843.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	5.43	-31.75	4	2
6	Motif group HL_57863.1 View motif instance in 3D Basepair signature: cWW-F-F-cWH-cWH-F	4.35	-18.93	3	3	G-quadruplex fragment
7	Motif group HL_57176.2 View motif instance in 3D Basepair signature: cWW-F-F-F	4.35	-153.20	3	3	Pseudoknot geometry with 3' bulge
8	Motif group HL_56334.1 View motif instance in 3D Basepair signature: cWW-F	2.17	-73.40	2	2	Mini UNCG
9	Motif group HL_31585.4 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	2.17	-137.17	2	2	Purine riboswitch
10	Motif group HL_25061.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	2.17	-151.14	5	4