JAR3D
Query RF00210-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Rfam family RF00210 maps to these 3 chains: 2NBX|1|A, 8HUJ|1|C, 8J7R|1|C See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.
Loop 24 Hairpin loop
Column numbers: 472-489 - View nucleotides in PDB file(s)
Scored sequences and counts
C---UUCUUUAAAA---G 24
C---UUCUAUAAAA---G 20
C---UUCUGUAAAA---G 13
G---UUCUAUCAAA---C 8
C---UUCUUUAAA----G 6
G---UUCUUUAAAA---C 3
C---UUCUAUCCAA---G 2
G---UUCUAUAAAA---C 2
GCACUGCUUUACAGAUGC 1
GCGCUGCUUUACAGACGU 1
C---CUCUAUAAAG---G 1
C---CUCUAUCUUG---G 1
C---UUCUCUAAAA---G 1
C---UUCUUUAAAG---G 1
G---UUCUAUAAAG---C 1
G---UUCUGUAAAA---C 1
U---CUCUAUAAAA---U 1
U---UUCUGUAAAA---A 1
U---UUCUUUAAAA---G 1
C---CUCUAUCAG----G 1
C---CUCUUUAAG----G 1
C---UCCUUUAAA----G 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_01962.2
Basepair signature:
|
80.43 | 6.31 | 4 | 2 |
|
| 2 |
Motif group HL_01255.1
Basepair signature:
|
58.70 | -8.49 | 5 | 4 |
|
| 3 |
Motif group HL_91503.7
Basepair signature:
|
25.00 | -9.14 | 5 | 3 |
|
| 4 |
Motif group HL_12870.1
Basepair signature:
|
19.57 | -1007.28 | 6 | 4 |
|
| 5 |
Motif group HL_98252.1
Basepair signature:
|
7.61 | -44.72 | 7 | 5 |
|
| 6 |
Motif group HL_34964.1
Basepair signature:
|
6.52 | -46.06 | 6 | 4 |
|
| 7 |
Motif group HL_90620.1
Basepair signature:
|
1.09 | -35.43 | 6 | 4 |
|
| 8 |
Motif group HL_69139.1
Basepair signature:
|
1.09 | -63.06 | 6 | 6 |
|
| 9 |
Motif group HL_36684.4
Basepair signature:
|
1.09 | -186.64 | 6 | 5 |
|
| 10 |
Motif group HL_97733.1
Basepair signature:
|
1.09 | -238.38 | 7 | 7 |
|
| 11 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -47.96 | 7 | 5 |
|
| 12 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -48.78 | 5 | 5 |
|
| 13 |
Motif group HL_67079.1
Basepair signature:
|
0.00 | -49.25 | 6 | 5 |
|
| 14 |
Motif group HL_88558.1
Basepair signature:
|
0.00 | -50.46 | 6 | 6 |
|
| 15 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -52.28 | 7 | 5 |
|
| 16 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -53.89 | 8 | 6 |
|
| 17 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -59.10 | 8 | 7 |
|
| 18 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -59.34 | 7 | 6 |
|
| 19 |
Motif group HL_06226.4
Basepair signature:
|
0.00 | -59.63 | 6 | 5.5 |
|
| 20 |
Motif group HL_78284.1
Basepair signature:
|
0.00 | -63.26 | 7 | 6 |
|
| 21 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -64.17 | 8 | 7 |
|
| 22 |
Motif group HL_41543.1
Basepair signature:
|
0.00 | -65.72 | 8 | 6 |
|
| 23 |
Motif group HL_70658.1
Basepair signature:
|
0.00 | -66.26 | 8 | 6.5 |
|
| 24 |
Motif group HL_53454.2
Basepair signature:
|
0.00 | -68.41 | 6 | 5 |
|
| 25 |
Motif group HL_29129.3
Basepair signature:
|
0.00 | -68.96 | 6 | 5 |
|
| 26 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -70.64 | 6 | 6 |
|
| 27 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -70.79 | 9 | 8 |
|
| 28 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -72.54 | 6 | 6 |
|
| 29 |
Motif group HL_60266.1
Basepair signature:
|
0.00 | -73.23 | 7 | 5 |
|
| 30 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -75.26 | 8 | 7 |
|
| 31 |
Motif group HL_86109.1
Basepair signature:
|
0.00 | -78.62 | 7 | 6 |
|
| 32 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -79.04 | 8 | 8 |
|
| 33 |
Motif group HL_94376.1
Basepair signature:
|
0.00 | -79.05 | 8 | 7 |
Pseudoknot geometry |
| 34 |
Motif group HL_15118.1
Basepair signature:
|
0.00 | -79.65 | 8 | 8 |
|
| 35 |
Motif group HL_25847.2
Basepair signature:
|
0.00 | -80.06 | 6.5 | 5 |
|
| 36 |
Motif group HL_02483.1
Basepair signature:
|
0.00 | -82.01 | 7.5 | 7 |
|
| 37 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -84.60 | 6 | 6 |
|
| 38 |
Motif group HL_38649.1
Basepair signature:
|
0.00 | -85.10 | 7 | 7 |
|
| 39 |
Motif group HL_11542.1
Basepair signature:
|
0.00 | -85.67 | 7 | 7 |
|
| 40 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -86.53 | 9 | 7 |
|
| 41 |
Motif group HL_16991.1
Basepair signature:
|
0.00 | -88.62 | 9 | 8 |
G-quadruplex fragment |
| 42 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -91.14 | 9 | 7 |
|
| 43 |
Motif group HL_87463.1
Basepair signature:
|
0.00 | -91.24 | 7 | 5 |
|
| 44 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -91.84 | 7 | 7 |
|
| 45 |
Motif group HL_18423.1
Basepair signature:
|
0.00 | -92.77 | 7 | 7 |
|
| 46 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -92.82 | 9 | 7 |
|
| 47 |
Motif group HL_98864.1
Basepair signature:
|
0.00 | -93.67 | 7 | 5 |
T-loop with unstacked turn |
| 48 |
Motif group HL_68257.1
Basepair signature:
|
0.00 | -98.96 | 7 | 7 |
|
| 49 |
Motif group HL_68767.1
Basepair signature:
|
0.00 | -99.18 | 8 | 6 |
tRNA D-loop |
| 50 |
Motif group HL_18978.1
Basepair signature:
|
0.00 | -99.66 | 6 | 6 |
|
| 51 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -101.41 | 7 | 7 |
tRNA D-loop |
| 52 |
Motif group HL_41464.2
Basepair signature:
|
0.00 | -105.55 | 6 | 4 |
|
| 53 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -105.79 | 8 | 7 |
|
| 54 |
Motif group HL_25061.1
Basepair signature:
|
0.00 | -107.49 | 6 | 6 |
|
| 55 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -108.49 | 11 | 9 |
G-quadruplex fragment |
| 56 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -112.36 | 8 | 8 |
|
| 57 |
Motif group HL_40252.4
Basepair signature:
|
0.00 | -113.95 | 7 | 7 |
|
| 58 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -116.41 | 7 | 7 |
Pseudoknot geometry |
| 59 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -116.83 | 7 | 7 |
tRNA D-loop |
| 60 |
Motif group HL_83808.4
Basepair signature:
|
0.00 | -119.12 | 7 | 7 |
Pseudoknot |
| 61 |
Motif group HL_02887.3
Basepair signature:
|
0.00 | -119.27 | 7 | 7 |
T-loop with 3 stacked bulged bases |
| 62 |
Motif group HL_75293.5
Basepair signature:
|
0.00 | -120.04 | 5 | 5 |
|
| 63 |
Motif group HL_93438.2
Basepair signature:
|
0.00 | -120.71 | 6 | 5 |
|
| 64 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -121.12 | 9 | 8 |
|
| 65 |
Motif group HL_85434.1
Basepair signature:
|
0.00 | -125.13 | 8 | 7 |
|
| 66 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -125.83 | 10 | 9 |
|
| 67 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -127.07 | 7 | 7 |
tRNA D-loop |
| 68 |
Motif group HL_73266.9
Basepair signature:
|
0.00 | -127.91 | 4 | 3 |
|
| 69 |
Motif group HL_53504.3
Basepair signature:
|
0.00 | -128.46 | 6 | 6 |
|
| 70 |
Motif group HL_86012.1
Basepair signature:
|
0.00 | -130.26 | 7 | 5 |
T-loop with unstacked turn |
| 71 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -130.57 | 7 | 7 |
tRNA D-loop |
| 72 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -130.76 | 10 | 8 |
|
| 73 |
Motif group HL_68572.1
Basepair signature:
|
0.00 | -131.80 | 7 | 7 |
|
| 74 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -132.19 | 8 | 8 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 75 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -132.73 | 7 | 7 |
|
| 76 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -134.35 | 10 | 9 |
|
| 77 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -137.49 | 10 | 8 |
|
| 78 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -138.58 | 9 | 8 |
|
| 79 |
Motif group HL_64690.6
Basepair signature:
|
0.00 | -140.64 | 5 | 5 |
|
| 80 |
Motif group HL_29958.1
Basepair signature:
|
0.00 | -141.66 | 11 | 9 |
|
| 81 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -143.29 | 6 | 6 |
|
| 82 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -145.75 | 8 | 8 |
|
| 83 |
Motif group HL_55436.1
Basepair signature:
|
0.00 | -146.13 | 8 | 6 |
|
| 84 |
Motif group HL_36335.1
Basepair signature:
|
0.00 | -146.18 | 7 | 7 |
|
| 85 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -147.96 | 10 | 9 |
|
| 86 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -151.30 | 4 | 4 |
tRNA anticodon loop |
| 87 |
Motif group HL_77082.1
Basepair signature:
|
0.00 | -152.44 | 4 | 4 |
Pseudoknot geometry |
| 88 |
Motif group HL_50537.6
Basepair signature:
|
0.00 | -154.50 | 7 | 5 |
tRNA anticodon loop with synthetase |
| 89 |
Motif group HL_81545.2
Basepair signature:
|
0.00 | -154.59 | 7.5 | 6 |
|
| 90 |
Motif group HL_66853.7
Basepair signature:
|
0.00 | -155.37 | 7 | 7 |
|
| 91 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -159.59 | 11 | 9 |
Pseudoknot geometry with G-bulge |
| 92 |
Motif group HL_61996.2
Basepair signature:
|
0.00 | -160.62 | 7 | 5 |
|
| 93 |
Motif group HL_28252.8
Basepair signature:
|
0.00 | -161.30 | 4 | 3 |
T-loop with 2 stacked bulged bases |
| 94 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -167.87 | 9 | 9 |
|
| 95 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -171.52 | 8 | 8 |
|
| 96 |
Motif group HL_50860.2
Basepair signature:
|
0.00 | -172.87 | 7 | 5 |
|
| 97 |
Motif group HL_70751.1
Basepair signature:
|
0.00 | -173.13 | 6 | 6 |
|
| 98 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -174.02 | 7 | 7 |
|
| 99 |
Motif group HL_29762.1
Basepair signature:
|
0.00 | -174.69 | 7 | 6 |
|
| 100 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -175.09 | 10 | 8 |
|
| 101 |
Motif group HL_57863.1
Basepair signature:
|
0.00 | -175.94 | 11 | 9 |
G-quadruplex fragment |
| 102 |
Motif group HL_20167.2
Basepair signature:
|
0.00 | -178.68 | 5 | 5 |
|
| 103 |
Motif group HL_86769.4
Basepair signature:
|
0.00 | -179.99 | 7 | 6 |
|
| 104 |
Motif group HL_84299.4
Basepair signature:
|
0.00 | -180.10 | 7 | 5 |
|
| 105 |
Motif group HL_77436.5
Basepair signature:
|
0.00 | -183.08 | 5 | 4 |
T-loop related |
| 106 |
Motif group HL_04171.7
Basepair signature:
|
0.00 | -183.47 | 7 | 6 |
|
| 107 |
Motif group HL_26934.1
Basepair signature:
|
0.00 | -196.31 | 8 | 6 |
|
| 108 |
Motif group HL_20535.2
Basepair signature:
|
0.00 | -200.98 | 7 | 5 |
|
| 109 |
Motif group HL_19210.3
Basepair signature:
|
0.00 | -203.21 | 5 | 5 |
|
| 110 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -203.57 | 9 | 8 |
|
| 111 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -209.20 | 7 | 7 |
tRNA D-loop |
| 112 |
Motif group HL_80411.1
Basepair signature:
|
0.00 | -209.43 | 8 | 8 |
tRNA D-loop |
| 113 |
Motif group HL_93135.1
Basepair signature:
|
0.00 | -210.56 | 7 | 7 |
Pseudoknot |
| 114 |
Motif group HL_45175.1
Basepair signature:
|
0.00 | -210.98 | 7 | 7 |
tRNA D-loop |
| 115 |
Motif group HL_87553.1
Basepair signature:
|
0.00 | -211.80 | 5 | 5 |
|
| 116 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -212.08 | 8 | 7 |
|
| 117 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -213.18 | 11 | 11 |
|
| 118 |
Motif group HL_20743.5
Basepair signature:
|
0.00 | -214.57 | 7 | 6.5 |
|
| 119 |
Motif group HL_48417.5
Basepair signature:
|
0.00 | -215.92 | 6 | 6 |
|
| 120 |
Motif group HL_10540.1
Basepair signature:
|
0.00 | -218.15 | 6 | 5 |
|
| 121 |
Motif group HL_50779.4
Basepair signature:
|
0.00 | -218.18 | 7 | 5 |
|
| 122 |
Motif group HL_50418.1
Basepair signature:
|
0.00 | -220.86 | 7 | 7 |
|
| 123 |
Motif group HL_28075.1
Basepair signature:
|
0.00 | -222.70 | 5 | 5 |
|
| 124 |
Motif group HL_01609.3
Basepair signature:
|
0.00 | -222.92 | 6 | 5 |
T-loop with 2 bulged bases not stacked |
| 125 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -228.08 | 8 | 6 |
|
| 126 |
Motif group HL_81538.2
Basepair signature:
|
0.00 | -233.75 | 5 | 4 |
GNRA with tandem sheared |
| 127 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -235.71 | 8 | 8 |
tRNA D-loop |
| 128 |
Motif group HL_88205.2
Basepair signature:
|
0.00 | -236.65 | 4 | 4 |
|
| 129 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -237.39 | 14 | 12 |
|
| 130 |
Motif group HL_33983.1
Basepair signature:
|
0.00 | -253.01 | 5 | 5 |
|
| 131 |
Motif group HL_04259.3
Basepair signature:
|
0.00 | -253.14 | 5 | 4 |
GNRA with extra cWW |
| 132 |
Motif group HL_74292.1
Basepair signature:
|
0.00 | -255.14 | 9 | 7 |
|
| 133 |
Motif group HL_80599.2
Basepair signature:
|
0.00 | -255.24 | 5 | 5 |
|
| 134 |
Motif group HL_15802.1
Basepair signature:
|
0.00 | -260.18 | 8 | 6 |
|
| 135 |
Motif group HL_04783.2
Basepair signature:
|
0.00 | -262.89 | 6 | 4 |
|
| 136 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -264.79 | 9 | 9 |
|
| 137 |
Motif group HL_18565.1
Basepair signature:
|
0.00 | -270.19 | 7 | 5 |
|
| 138 |
Motif group HL_99867.1
Basepair signature:
|
0.00 | -272.73 | 8 | 6 |
|
| 139 |
Motif group HL_73255.1
Basepair signature:
|
0.00 | -272.77 | 7 | 7 |
|
| 140 |
Motif group HL_78347.4
Basepair signature:
|
0.00 | -273.25 | 5 | 5 |
|
| 141 |
Motif group HL_80008.1
Basepair signature:
|
0.00 | -278.74 | 5 | 5 |
|
| 142 |
Motif group HL_83632.1
Basepair signature:
|
0.00 | -279.27 | 6 | 4 |
tRNA anticodon loop |
| 143 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -282.77 | 7 | 7 |
|
| 144 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -284.28 | 12 | 11 |
|
| 145 |
Motif group HL_13529.1
Basepair signature:
|
0.00 | -293.81 | 7 | 7 |
|
| 146 |
Motif group HL_80362.1
Basepair signature:
|
0.00 | -294.36 | 6 | 6 |
|
| 147 |
Motif group HL_21372.1
Basepair signature:
|
0.00 | -294.85 | 6 | 4 |
|
| 148 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -300.36 | 9 | 7 |
|
| 149 |
Motif group HL_85367.2
Basepair signature:
|
0.00 | -316.78 | 5 | 5 |
|
| 150 |
Motif group HL_38808.1
Basepair signature:
|
0.00 | -317.06 | 6 | 6 |
|
| 151 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -320.34 | 6 | 6 |
|
| 152 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -323.50 | 9 | 7 |
|
| 153 |
Motif group HL_20811.4
Basepair signature:
|
0.00 | -328.65 | 6.5 | 6 |
tRNA D-loop |
| 154 |
Motif group HL_72628.1
Basepair signature:
|
0.00 | -328.90 | 6 | 6 |
|
| 155 |
Motif group HL_38046.1
Basepair signature:
|
0.00 | -333.09 | 9.5 | 7.5 |
|
| 156 |
Motif group HL_42046.2
Basepair signature:
|
0.00 | -339.15 | 6 | 6 |
|
| 157 |
Motif group HL_59330.1
Basepair signature:
|
0.00 | -345.16 | 7 | 7 |
|
| 158 |
Motif group HL_07951.3
Basepair signature:
|
0.00 | -356.25 | 7 | 7 |
tRNA D-loop |
| 159 |
Motif group HL_97917.2
Basepair signature:
|
0.00 | -361.44 | 5 | 4 |
|
| 160 |
Motif group HL_10453.3
Basepair signature:
|
0.00 | -367.02 | 7 | 5 |
tRNA anticodon loop |
| 161 |
Motif group HL_99748.1
Basepair signature:
|
0.00 | -383.76 | 7 | 7 |
Other HL |
| 162 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -387.84 | 7 | 7 |
|
| 163 |
Motif group HL_78197.1
Basepair signature:
|
0.00 | -391.69 | 4 | 4 |
|
| 164 |
Motif group HL_27670.2
Basepair signature:
|
0.00 | -414.04 | 7 | 6 |
T-loop with unstacked turn |
| 165 |
Motif group HL_25967.2
Basepair signature:
|
0.00 | -435.94 | 6 | 6 |
|
| 166 |
Motif group HL_09452.1
Basepair signature:
|
0.00 | -436.50 | 8 | 6 |
|
| 167 |
Motif group HL_00914.1
Basepair signature:
|
0.00 | -437.52 | 7 | 5 |
|
| 168 |
Motif group HL_02817.2
Basepair signature:
|
0.00 | -441.37 | 6 | 6 |
|
| 169 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -447.01 | 7 | 6 |
|
| 170 |
Motif group HL_97983.1
Basepair signature:
|
0.00 | -453.72 | 10 | 8 |
|
| 171 |
Motif group HL_56131.2
Basepair signature:
|
0.00 | -457.05 | 5 | 5 |
|
| 172 |
Motif group HL_85993.1
Basepair signature:
|
0.00 | -457.72 | 9 | 7 |
|
| 173 |
Motif group HL_93324.4
Basepair signature:
|
0.00 | -464.93 | 5 | 5 |
Pseudoknot geometry |
| 174 |
Motif group HL_22622.1
Basepair signature:
|
0.00 | -466.55 | 7.5 | 7 |
|
| 175 |
Motif group HL_47854.1
Basepair signature:
|
0.00 | -479.20 | 9 | 8 |
|
| 176 |
Motif group HL_50006.2
Basepair signature:
|
0.00 | -485.35 | 6 | 5 |
|
| 177 |
Motif group HL_89567.2
Basepair signature:
|
0.00 | -493.10 | 7 | 7 |
|
| 178 |
Motif group HL_31585.4
Basepair signature:
|
0.00 | -501.90 | 6 | 4 |
Purine riboswitch |
| 179 |
Motif group HL_13963.3
Basepair signature:
|
0.00 | -510.95 | 8 | 6 |
|
| 180 |
Motif group HL_37369.2
Basepair signature:
|
0.00 | -511.31 | 6 | 5 |
|
| 181 |
Motif group HL_37344.1
Basepair signature:
|
0.00 | -511.66 | 6 | 6 |
|
| 182 |
Motif group HL_39243.1
Basepair signature:
|
0.00 | -517.18 | 7 | 5 |
|
| 183 |
Motif group HL_30680.3
Basepair signature:
|
0.00 | -523.21 | 7 | 5 |
Pseudoknot geometry |
| 184 |
Motif group HL_37824.7
Basepair signature:
|
0.00 | -527.26 | 6 | 6 |
GNRA |
| 185 |
Motif group HL_80922.2
Basepair signature:
|
0.00 | -530.19 | 7 | 6 |
|
| 186 |
Motif group HL_42998.2
Basepair signature:
|
0.00 | -537.29 | 8 | 6 |
|
| 187 |
Motif group HL_89893.1
Basepair signature:
|
0.00 | -538.60 | 8 | 8 |
|
| 188 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -543.52 | 10 | 9 |
|
| 189 |
Motif group HL_08100.1
Basepair signature:
|
0.00 | -561.69 | 5 | 5 |
|
| 190 |
Motif group HL_66103.1
Basepair signature:
|
0.00 | -572.17 | 6 | 6 |
|
| 191 |
Motif group HL_07886.3
Basepair signature:
|
0.00 | -588.59 | 7 | 7 |
|
| 192 |
Motif group HL_15574.1
Basepair signature:
|
0.00 | -589.85 | 7 | 6 |
|
| 193 |
Motif group HL_86870.2
Basepair signature:
|
0.00 | -596.04 | 8 | 6 |
|
| 194 |
Motif group HL_43517.1
Basepair signature:
|
0.00 | -605.01 | 7 | 6 |
|
| 195 |
Motif group HL_53890.2
Basepair signature:
|
0.00 | -608.75 | 6 | 6 |
|
| 196 |
Motif group HL_50318.1
Basepair signature:
|
0.00 | -608.99 | 6 | 6 |
|
| 197 |
Motif group HL_27483.1
Basepair signature:
|
0.00 | -621.48 | 8 | 7 |
|
| 198 |
Motif group HL_62934.1
Basepair signature:
|
0.00 | -632.57 | 7 | 7 |
|
| 199 |
Motif group HL_65794.5
Basepair signature:
|
0.00 | -636.75 | 8 | 6 |
Pseudoknot geometry |
| 200 |
Motif group HL_49922.4
Basepair signature:
|
0.00 | -647.09 | 7 | 6.5 |
|
| 201 |
Motif group HL_30068.2
Basepair signature:
|
0.00 | -650.94 | 7 | 7 |
|
| 202 |
Motif group HL_93535.1
Basepair signature:
|
0.00 | -654.51 | 6 | 6 |
|
| 203 |
Motif group HL_87954.2
Basepair signature:
|
0.00 | -655.20 | 6 | 6 |
|
| 204 |
Motif group HL_47787.2
Basepair signature:
|
0.00 | -656.09 | 6 | 6 |
|
| 205 |
Motif group HL_59843.1
Basepair signature:
|
0.00 | -667.91 | 7 | 7 |
|
| 206 |
Motif group HL_22584.6
Basepair signature:
|
0.00 | -668.61 | 7 | 7 |
Fab BL3-6 binding hairpin with tSW |
| 207 |
Motif group HL_13189.1
Basepair signature:
|
0.00 | -679.95 | 8 | 8 |
|
| 208 |
Motif group HL_57875.1
Basepair signature:
|
0.00 | -691.40 | 7 | 6 |
|
| 209 |
Motif group HL_82710.2
Basepair signature:
|
0.00 | -692.34 | 9 | 7 |
|
| 210 |
Motif group HL_71391.1
Basepair signature:
|
0.00 | -693.14 | 8 | 6 |
|
| 211 |
Motif group HL_32392.1
Basepair signature:
|
0.00 | -705.85 | 8 | 7 |
|
| 212 |
Motif group HL_46501.1
Basepair signature:
|
0.00 | -738.14 | 7 | 7 |
|
| 213 |
Motif group HL_56676.1
Basepair signature:
|
0.00 | -755.03 | 7 | 7 |
|
| 214 |
Motif group HL_34617.5
Basepair signature:
|
0.00 | -755.08 | 7 | 7 |
UNCG |
| 215 |
Motif group HL_38901.2
Basepair signature:
|
0.00 | -784.41 | 7 | 7 |
tRNA D-loop |
| 216 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -3894.47 | 12 | 10.5 |
|
| 217 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -3900.23 | 10 | 9 |
|
| 218 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -3905.42 | 10 | 10 |
|
| 219 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -3933.30 | 16 | 14 |
G-quadruplex |
| 220 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -3977.31 | 17 | 17 |
G-quadruplex |
| 221 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -3978.64 | 18 | 17 |
G-quadruplex |
| 222 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -4028.86 | 17 | 15 |
|
| 223 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -4432.51 | 28 | 28 |
|
| 224 |
Motif group HL_93383.1
Basepair signature:
|
0.00 | -5296.87 | 7 | 5 |
|
| 225 |
Motif group HL_51447.1
Basepair signature:
|
0.00 | -7446.39 | 9 | 9 |
|
| 226 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -8244.42 | 11 | 10 |
|
| 227 |
Motif group HL_67667.2
Basepair signature:
|
0.00 | -8577.12 | 7 | 7 |
|
| 228 |
Motif group HL_99040.1
Basepair signature:
|
0.00 | -8900.77 | 9 | 8 |
|
| 229 |
Motif group HL_89199.2
Basepair signature:
|
0.00 | -9365.67 | 7.5 | 7 |
Mini UNCG |
| 230 |
Motif group HL_57176.2
Basepair signature:
|
0.00 | -9604.79 | 7 | 6 |
Pseudoknot geometry with 3' bulge |
| 231 |
Motif group HL_48778.2
Basepair signature:
|
0.00 | -9614.26 | 6 | 6 |
Mini UNCG |
| 232 |
Motif group HL_59735.5
Basepair signature:
|
0.00 | -9614.92 | 7 | 7 |
|
| 233 |
Motif group HL_70782.2
Basepair signature:
|
0.00 | -9619.34 | 7 | 7 |
|
| 234 |
Motif group HL_75660.5
Basepair signature:
|
0.00 | -9641.14 | 7 | 7 |
|
| 235 |
Motif group HL_38168.1
Basepair signature:
|
0.00 | -9641.70 | 7 | 7 |
|
| 236 |
Motif group HL_69752.2
Basepair signature:
|
0.00 | -9646.85 | 7 | 7 |
|
| 237 |
Motif group HL_22135.1
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
|
| 238 |
Motif group HL_26631.1
Basepair signature:
|
0.00 | -9999.00 | 9 | 9 |
|
| 239 |
Motif group HL_28791.1
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
|
| 240 |
Motif group HL_29966.1
Basepair signature:
|
0.00 | -9999.00 | 9 | 8 |
|
| 241 |
Motif group HL_32346.4
Basepair signature:
|
0.00 | -9999.00 | 7 | 7 |
|
| 242 |
Motif group HL_35941.1
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
|
| 243 |
Motif group HL_52953.3
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
|
| 244 |
Motif group HL_55195.3
Basepair signature:
|
0.00 | -9999.00 | 7 | 7 |
|
| 245 |
Motif group HL_56334.1
Basepair signature:
|
0.00 | -9999.00 | 7 | 7 |
Mini UNCG |
| 246 |
Motif group HL_60914.1
Basepair signature:
|
0.00 | -9999.00 | 9 | 9 |
|
| 247 |
Motif group HL_65313.1
Basepair signature:
|
0.00 | -9999.00 | 7 | 7 |
|
| 248 |
Motif group HL_76094.1
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
|
| 249 |
Motif group HL_78677.1
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
|
| 250 |
Motif group HL_80709.3
Basepair signature:
|
0.00 | -9999.00 | 6 | 6 |
|
| 251 |
Motif group HL_81100.2
Basepair signature:
|
0.00 | -9999.00 | 8 | 7 |
|
| 252 |
Motif group HL_86883.1
Basepair signature:
|
0.00 | -9999.00 | 9 | 7 |
|
| 253 |
Motif group HL_94980.1
Basepair signature:
|
0.00 | -9999.00 | 8 | 8 |
|