RNA 3D Hub

JAR3D Query RF00210-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF00210 maps to these 3 chains: 2NBX|1|A, 8HUJ|1|C, 8J7R|1|C See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 18 Internal loop

Column numbers: 419-423, 447-449 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    UACCC*GGA   88

    
    UACAC*GGA    1

    
    UACCC*AGA    1

    
    UACCC*GAA    1

    
    UACCU*AGA    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_06549.2

Basepair signature:
cWW-cWW

100.00 50.70 1 1

2

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

98.91 36.13 3 1

3

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

98.91 24.10 6 2

4

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

98.91 16.79 4 2

5

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

98.91 16.38 2 2

Minor groove platform

6

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

98.91 12.07 5 2

7

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

97.83 4.45 6 2

8

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

97.83 2.26 6 2

9

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

97.83 1.52 5 3

Multiple bulged bases

10

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

2.17 -23.19 7 3

11

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

1.09 -0.23 6 3

Isolated non-canonical cWW pair

12

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

1.09 -6.39 4 1

Stack and bulge

13

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

1.09 -11.35 5 2

14

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

1.09 -13.62 3 3

15

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

1.09 -20.35 6 4

16

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

1.09 -23.03 3 2

17

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

1.09 -30.44 6 3

18

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

1.09 -33.54 5 3

19

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -4.10 3 2

C-loop

20

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -5.01 4 2

21

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -12.19 6 3

22

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -16.59 4 2

23

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -18.99 3 1

24

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -21.77 5 3

25

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -27.27 5 2

26

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -27.71 5 4

27

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -30.81 7 3

28

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -31.98 4 2

Isolated non-canonical cWW pair

29

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -35.32 6 4

30

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -35.99 6 3

31

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -37.11 6 3

32

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -38.12 6 4

33

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -38.47 4 4

34

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -40.84 5 2

35

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -41.96 7 3

Decoding loop related

36

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -42.54 7 5

37

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -43.05 8 4

38

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -44.13 6 4

39

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -44.59 5 3

40

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -45.05 5 3

41

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -45.99 6 4

42

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -48.03 6 4

43

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -48.36 6 4

8-nt loop receptor

44

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -48.93 5 3

45

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -48.95 4 4

Pseudoknot

46

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -49.51 8 4

47

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -50.52 8 4

48

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -50.58 4 1

Isolated cWS basepair

49

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -52.72 9 5

50

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -52.82 2 2

51

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -52.89 8 4

52

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -53.37 5 2

Isolated non-canonical cWW pair

53

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -53.44 5 2

54

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -55.68 5 4

55

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -55.71 8 4

56

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -55.82 5 3

57

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -56.25 6 3

58

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -56.83 6 3

59

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -56.96 5 4

tSH-tHW

60

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -59.49 5 2

61

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -60.01 4 3

62

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -60.11 5 4

63

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -60.87 7 4

Receptor of 11-nt loop-receptor motif

64

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -60.99 6 4

65

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -61.89 6 4

66

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -65.60 5 4

Reverse kink-turn

67

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -66.22 7 4

68

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -67.71 7 5

69

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -69.50 7 4

Intercalated tWH

70

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -70.85 7 4

71

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -73.40 6 3

72

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -73.50 7 5

73

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -74.03 5 5

74

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -75.95 6 3

75

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -76.36 6 5

76

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -77.00 9 6

77

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -78.50 6 4

78

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -79.06 4 2

79

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -79.94 4 2

Isolated non-canonical cWW pair

80

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -83.09 8 5

81

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -84.71 6 3

82

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -85.70 8 5

83

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -85.70 6 6

84

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -85.85 6 5

180 degree turn

85

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -86.17 7 4

86

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -86.25 5 3

87

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -87.79 7 5

88

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -88.66 9 5

89

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -88.93 8 5

Part of G-quadruplex

90

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -89.79 4 2

91

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -90.39 9 6

Kink-turn related

92

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -90.44 7 5

93

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -91.46 6 4

94

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -92.83 6 4

95

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -93.91 2 2

96

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -94.02 7 5

Kink-turn related

97

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -94.14 7 4

tSH-tHW

98

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -94.53 7 4

99

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -94.86 7 5

100

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -97.36 10 6

101

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -98.12 6 4

102

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -99.55 6 5

103

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -99.80 4 2

Decoding loop related

104

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -100.10 7 5

105

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -100.31 8 5

106

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -101.51 4 4

107

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -102.49 6 6

108

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -102.85 7 4

109

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -104.24 8 6

110

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -104.66 5 2

Isolated non-canonical cWW contact

111

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -105.99 8 5

Major groove intercalation

112

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -106.01 6 5

UAA/GAN related

113

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -106.27 6 4

114

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -106.46 7 5

Minor groove platform

115

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -107.58 6 3

116

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -107.64 8 6

Vitamin B12 Aptamer

117

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -107.91 7 5

118

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -108.12 7 5

119

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -108.33 6 4

120

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -108.56 9 6

121

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -108.79 9 6

122

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -108.92 7 3

123

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -109.15 3 3

124

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -109.18 8 6

125

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -109.20 6 5

126

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -109.78 6 5

127

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -114.09 3 3

Major groove minor groove platform with intercalation; mini C-loop

128

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -114.24 3 2

129

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -115.86 11 7

Reverse kink-turn related

130

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -115.97 8 5

131

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -116.16 7 4

132

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -116.67 6 4

133

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -116.91 6 6

cWH basepair with bulged bases

134

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -117.25 7 5

135

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -117.31 7 4

136

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -117.57 8 5

137

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -118.33 6 4

138

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -118.47 3 2

Multiple bulged bases

139

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -118.71 6 6

140

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -118.87 5 5

141

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -119.45 6 3

142

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -120.17 10 6

143

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -120.64 6 5

144

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -121.51 2 2

Minor groove platform

145

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -121.93 8 6

146

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -122.53 4 3

Minor groove platform, major groove intercalation

147

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -122.92 8 6

148

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -123.17 10 7

Reverse turn

149

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -124.73 7 4

Bulged stacked bases

150

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -124.94 6 6

UAA/GAN with extra stack

151

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -125.26 6 4

152

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -127.14 5 3

153

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -127.89 7 4

cWH basepair and non-canonical AC

154

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -128.54 5 4

Multiple bulged bases

155

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -128.67 7 6

156

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -129.29 9 5

157

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -130.14 6 4

158

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -130.24 6 2

Major groove platform with intercalated tWH

159

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -130.67 7 5

160

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -131.09 6 5

161

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -131.23 10 7

162

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -131.62 8 5

163

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -132.53 10 6

164

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -132.78 7 6

165

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -133.92 8 5

Receptor of 11-nt loop-receptor motif

166

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -134.56 6 4

167

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -134.98 3 2

Isolated non-canonical cWW pair

168

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -135.12 10 7

169

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -135.75 8 6

170

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -135.76 8 5

171

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -135.97 8 4

172

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -136.90 5 3

Intercalated cWS

173

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -137.44 3 2

Isolated cWH basepair

174

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -140.50 8 7

Kink-turn related

175

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -140.57 7 4

176

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -141.02 3 3

Minor groove platform

177

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -142.65 8 4

178

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -142.96 9 7

Kink-turn

179

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -143.32 10 6

180

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -143.34 8 5

Kink-turn from U4

181

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -143.44 4 3

182

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -143.96 9 7

183

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -145.86 5 3

Multiple bulged bases

184

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -146.09 9 7

185

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -147.17 9 6

186

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -147.29 10 7

187

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -147.43 8 6

188

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -147.53 6 4

189

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -147.89 4 3

Double sheared

190

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -148.15 5 5

AAA cross-strand stack

191

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -149.73 3 3

Isolated tWW turn

192

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -151.43 4 4

Minor groove platform

193

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -151.53 7 7

194

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -152.21 7 5

195

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -155.23 3 3

Major groove intercalation

196

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -157.73 7 5

197

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -157.75 3 3

C-loop

198

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -159.15 7 7

199

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -160.87 7 7

Sarcin-Ricin target in LSU H95; G-bulge

200

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -161.43 6 5

201

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -161.46 8 5

Double sheared; A in syn; two near cWW pairs

202

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -161.49 6 3

Multiple bulged bases

203

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -161.81 4 3

204

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -162.36 10 6

Kink-turn with embedded cWW pair

205

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -163.15 7 6

206

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -163.50 7 7

207

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -163.99 5 3

208

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -164.62 8 7

tHW-tHW cross-strand stack

209

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -165.21 5 3

210

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -165.26 10 8

211

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -165.33 5 3

Double sheared

212

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -167.43 4 3

213

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -169.31 5 3

Major groove minor groove platform; mini C-loop

214

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -169.49 5 3

Tandem non-canonical cWW pairs

215

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -169.53 11 8

216

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -170.13 6 3

217

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -170.15 8 6

Triple sheared related

218

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -170.47 9 8

219

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -171.32 9 6

Other IL

220

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -172.88 10 8

221

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -173.50 7 4

Left turn

222

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -173.63 6 3

tSH-tHW

223

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -174.53 5 3

Major groove platform

224

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -174.86 11 8

225

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -174.89 8 8

226

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -174.90 4 3

227

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -175.00 10 8

228

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -176.17 7 6

6x5 Sarcin-Ricin; G-bulge

229

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -178.49 3 3

Major groove platform

230

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -178.78 9 7

Kink-turn

231

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -178.87 9 8

232

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -179.08 10 8

233

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -179.71 10 7

234

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -182.52 10 8

235

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -182.98 8 4

236

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -184.45 8 8

8x6 Sarcin-Ricin with inserted A; G-bulge

237

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -184.48 10 6

238

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -185.40 12 9

239

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -185.75 10 8

240

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -186.14 10 6

241

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -186.88 6 3

242

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -187.40 7 7

243

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -187.90 7 6

Kink-turn

244

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -189.52 7 5

245

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -189.55 9 8

Minor groove platform related

246

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -190.70 8 6

247

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -191.13 11 8

tSH-tHS-tHW

248

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -191.44 9 6

UAA/GAN with tHH

249

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -191.64 7 3

Other IL

250

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -192.28 7 5

251

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -192.66 8 5

tSH-tHH-tHS

252

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -193.40 12 8

253

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -193.85 11 9

254

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -194.06 4 3

Isolated non-canonical cWW pair

255

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -194.26 6 5

SSU/LSU pseudoknot

256

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -196.53 7 5

257

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -197.41 5 3

Single stack bend

258

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -199.14 6 3

UAA/GAN related

259

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -199.62 10 7

8x6 Sarcin-Ricin with inserted Y; G-bulge

260

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -199.74 8 4

261

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -200.18 6 4

UAA/GAN

262

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -200.40 6 3

263

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -200.58 5 4

264

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -201.55 4 2

Tandem non-canonical cWW pairs

265

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -202.04 10 8

Kink-turn

266

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -204.02 6 4

Major groove intercalation

267

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -204.21 7 4

Isolated tHS basepair with bulges

268

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -206.32 7 6

269

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -207.85 9 7

270

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -207.92 7 4

271

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -210.49 10 8

272

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -210.64 6 5

273

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -210.83 8 8

tWH-tWH-tHW-tHW

274

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -210.95 12 10

275

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -213.39 10 8

8x6 Sarcin-Ricin with bulged A; G-bulge

276

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -213.43 10 10

277

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -215.00 7 7

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

278

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -215.20 8 7

Other IL

279

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -217.02 5 3

280

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -218.65 5 3

281

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -219.90 12 9

282

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -220.93 9 7

Kink-turn related

283

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -221.97 7 7

Kink-turn

284

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -226.21 10 8

285

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -226.79 12 10

286

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -227.00 7 6

UAA/GAN with extra cWW

287

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -227.56 11 9

288

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -228.23 9 7

Kink-turn

289

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -230.12 5 3

Single stack bend

290

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -230.56 10 8

291

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -230.99 11 10

292

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -231.16 7 5

tSH-tWH-tHS-cWW

293

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -233.35 7 6

Kink-turn

294

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -233.50 3 3

Single bulged C

295

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -233.75 7 5

UAA/GAN

296

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -234.79 11 10

297

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -235.97 4 3

UAA/GAN variation

298

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -236.02 13 10

299

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -236.35 3 3

Single bulged A

300

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -238.53 9 8

7x7 Sarcin-Ricin with intercalated A; G-bulge

301

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -238.97 4 3

Major groove platform; stack outside cWW

302

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -239.39 9 7

Kink-turn

303

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -241.36 7 5

Triple sheared

304

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -243.98 7 7

7x6 Sarcin-Ricin; G-bulge

305

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -244.08 15 13

306

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -244.26 11 7

307

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -244.30 12 11

Pseudoknot

308

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -247.15 14 12

309

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -247.71 10 7

tSH-tSH-tHH-tHS

310

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -250.11 12 9

Kink-turn

311

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -250.94 5 4

312

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -251.53 11 10

313

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -251.77 10 9

314

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -252.02 8 8

Triple sheared with non-canonical cWW

315

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -252.37 10 10

tSH-tHW-tHH-tHS

316

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -252.96 5 3

Major groove platform with intercalation

317

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -255.78 10 9

318

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -256.34 10 9

Kink-turn

319

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -256.77 8 6

tSH-tHW-tWH-tHS

320

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -257.57 13 12

Kink-turn related

321

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -259.37 9 6

322

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -260.51 9 5

323

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -260.52 13 10

324

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -264.76 6 6

325

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -265.90 14 13

326

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -268.34 11 11

327

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -268.73 5 4

Tandem non-canonical cWW pairs

328

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -268.98 13 11

329

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -269.47 11 10

Pseudoknot

330

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -271.76 9 7

331

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -272.06 6 4

332

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -272.81 11 9

8x7 Sarcin-Ricin; G-bulge

333

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -274.47 12 10

334

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -277.38 12 12

335

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -279.92 9 9

336

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -280.00 14 12

337

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -280.57 11 8

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

338

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -283.34 9 9

8x7 Sarcin-Ricin; G-bulge

339

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -283.75 12 12

10x8 Sarcin-Ricin; G-bulge

340

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -284.20 7 4

Double sheared with non-canonical cWW

341

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -286.03 10 7

342

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -286.53 13 11

343

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -288.90 7 4

tSH-tWH-tHS

344

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -292.27 5 4

Triple non-canonical cWW pairs

345

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -292.88 13 11

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

346

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -295.71 6 6

Quadruple sheared

347

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -295.94 13 11

348

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -296.54 15 14

Kink-turn

349

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -297.87 3 3

Symmetric double minor groove platform

350

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -300.62 14 12

351

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -301.98 16 14

352

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -304.02 9 8

353

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -306.33 4 4

Single bulged G

354

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -307.09 12 11

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

355

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -314.06 12 10

356

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -314.83 11 11

Pseudoknot

357

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -316.26 5 4

Triple sheared

358

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -322.95 15 13

359

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -323.36 6 5

Reverse kink-turn related

360

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -323.95 7 5

5x5 Sarcin-Ricin with intercalated A; G-bulge

361

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -326.75 11 8

362

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -327.12 12 10

363

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -327.95 4 4

Single bulged U

364

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -330.58 13 10

365

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -331.34 9 9

366

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -334.06 14 13

367

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -337.36 10 9

368

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -337.69 12 12

369

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -349.03 15 13

370

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -349.12 15 14

371

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -358.52 14 11

372

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -362.09 9 6

373

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -362.89 17 15

374

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -364.20 14 12

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

375

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -374.84 10 7

376

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -379.37 12 10

377

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -382.16 13 11

378

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -382.62 17 15

379

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -385.38 16 15

380

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -386.30 12 12

381

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -387.56 13 10

382

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -395.14 12 12

383

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -399.45 14 11

Bacterial 5S Loop E

384

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -406.23 18 17

385

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -424.31 12 12

386

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -426.49 9 9

Kink-turn

387

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -455.89 21 19

388

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -466.70 9 9

Kink-turn related

389

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -475.67 23 20

390

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -476.17 14 14

391

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -486.87 21 19

392

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -492.11 18 17

Kink-turn related

393

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -498.67 7 6

394

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -503.63 20 20

395

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -507.58 19 17

396

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -512.52 21 20

397

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -531.55 24 22

398

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4539.27 19 17

399

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4718.53 12 11

400

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -5063.74 11 10

401

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -5276.63 11 9

402

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -5300.27 10 6

403

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -5300.28 9 7

Kink-turn with non-sequential stacking

404

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -5318.74 13 10

Part of G-quadruplex

405

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5323.37 14 13

406

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5346.13 10 9

407

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5347.75 10 9

408

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6233.49 9 8

409

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -6853.77 7 6

Kink-turn

410

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -6980.21 7 4

C-loop with bulged stacked A's

411

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -7298.47 8 6

Coloring options: