7WTP Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7WTP_001 | 1/C2/7:17 | No text annotation Not in a motif group | ||
| HL_7WTP_003 | 1/C2/154:160 | Other HL Not in a motif group | geometric HL_4V88_188 HL_76539.2 | |
| HL_7WTP_004 | 1/C2/190:195 | No text annotation Not in a motif group | ||
| HL_7WTP_005 | 1/C2/230:235 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_76539.2 | |
| HL_7WTP_006 | 1/C2/243:250 | T-loop with 1 bulged base Not in a motif group | geometric HL_4V88_191 HL_27930.1 | |
| HL_7WTP_007 | 1/C2/276:279 | No text annotation Not in a motif group | geometric HL_5U30_001 HL_53837.1 | |
| HL_7WTP_008 | 1/C2/330:338 | No text annotation Not in a motif group | geometric HL_4V88_193 HL_69023.2 | |
| HL_7WTP_009 | 1/C2/368:373 | No text annotation Not in a motif group | geometric HL_4V88_194 HL_50142.2 | |
| HL_7WTP_010 | 1/C2/393:404 | No text annotation Not in a motif group | geometric HL_4V88_195 HL_84288.1 | |
| HL_7WTP_011 | 1/C2/414:419 | UNCG Not in a motif group | geometric HL_4V88_196 HL_03562.2 | |
| HL_7WTP_012 | 1/C2/450:456 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_7WTP_014 | 1/C2/520:532 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
| HL_7WTP_015 | 1/C2/569:574 | Other HL Not in a motif group | geometric HL_2CZJ_007 HL_53845.1 | |
| HL_7WTP_017 | 1/C2/764:772 | No text annotation Not in a motif group | geometric HL_4V88_203 HL_46766.2 | |
| HL_7WTP_018 | 1/C2/777:783 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_7WTP_019 | 1/C2/829:843 | No text annotation Not in a motif group | geometric HL_4V88_205 HL_96598.1 | |
| HL_7WTP_020 | 1/C2/900:909 | No text annotation Not in a motif group | geometric HL_4V88_206 HL_12326.1 | |
| HL_7WTP_021 | 1/C2/937:942 | Other HL Not in a motif group | geometric HL_5J7L_016 HL_87030.2 | |
| HL_7WTP_022 | 1/C2/997:1007 | No text annotation Not in a motif group | ||
| HL_7WTP_023 | 1/C2/1055:1064 | No text annotation Not in a motif group | geometric HL_2ZZM_002 HL_23083.1 | |
| HL_7WTP_024 | 1/C2/1084:1089 | Other HL Not in a motif group | geometric HL_4V88_210 HL_42097.1 | |
| HL_7WTP_025 | 1/C2/1121:1126 | GNRA Not in a motif group | geometric HL_4V88_211 HL_42097.1 | |
| HL_7WTP_027 | 1/C2/1778:1783 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7WTP_002 | No text annotation | ||
| HL_7WTP_013 | No text annotation | ||
| HL_7WTP_016 | No text annotation | ||
| HL_7WTP_026 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7WTP_001 | 1/C2/24:26, 1/C2/600:601 | Single bulged C Not in a motif group | geometric IL_4V88_384 IL_61258.12 | |
| IL_7WTP_002 | 1/C2/35:37, 1/C2/471:473 | UC cWW Not in a motif group | geometric IL_4V88_385 IL_51629.2 | |
| IL_7WTP_003 | 1/C2/37:41, 1/C2/466:471 | No text annotation Not in a motif group | geometric IL_4V88_386 IL_41507.1 | |
| IL_7WTP_004 | 1/C2/42:48, 1/C2/431:433 | No text annotation Not in a motif group | geometric IL_4V88_387 IL_33912.1 | |
| IL_7WTP_005 | 1/C2/50:52, 1/C2/428:429 | Minor groove platform Not in a motif group | geometric IL_4LFB_004 IL_93353.1 | |
| IL_7WTP_006 | 1/C2/58:63, 1/C2/87:89 | No text annotation Not in a motif group | geometric IL_4V88_389 IL_95004.1 | |
| IL_7WTP_007 | 1/C2/64:69, 1/C2/82:86 | No text annotation Not in a motif group | geometric IL_4V88_390 IL_77691.1 | |
| IL_7WTP_008 | 1/C2/109:112, 1/C2/302:305 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_391 IL_30621.2 | |
| IL_7WTP_009 | 1/C2/113:116, 1/C2/300:301 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_7WTP_010 | 1/C2/117:122, 1/C2/295:299 | No text annotation Not in a motif group | geometric IL_4V88_393 IL_64181.2 | |
| IL_7WTP_011 | 1/C2/144:149, 1/C2/165:171 | tWH-tWH-tHW-tHW Not in a motif group | geometric IL_4LFB_009 IL_39753.1 | |
| IL_7WTP_012 | 1/C2/150:152, 1/C2/162:164 | AA cWW Not in a motif group | geometric IL_5ED1_002 IL_95997.1 | |
| IL_7WTP_013 | 1/C2/186:190, 1/C2/195:199 | No text annotation Not in a motif group | ||
| IL_7WTP_014 | 1/C2/204:206, 1/C2/259:263 | Major groove platform with extra cWW Not in a motif group | geometric IL_7RQB_022 IL_05564.2 | |
| IL_7WTP_015 | 1/C2/206:208, 1/C2/257:259 | No text annotation Not in a motif group | geometric IL_2O3V_004 IL_95997.1 | |
| IL_7WTP_016 | 1/C2/265:267, 1/C2/288:289 | Single bulged A Not in a motif group | geometric IL_4V88_399 IL_37497.2 | |
| IL_7WTP_017 | 1/C2/270:273, 1/C2/283:285 | No text annotation Not in a motif group | geometric IL_4V88_400 IL_47298.1 | |
| IL_7WTP_018 | 1/C2/275:276, 1/C2/279:281 | No text annotation Not in a motif group | homologous IL_8C3A_409 IL_83039.13 | |
| IL_7WTP_019 | 1/C2/311:316, 1/C2/348:355 | Kink-turn with non-sequential stacking Not in a motif group | geometric IL_4V88_402 IL_45067.2 | |
| IL_7WTP_020 | 1/C2/318:323, 1/C2/345:346 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_7WTP_021 | 1/C2/363:365, 1/C2/376:381 | No text annotation Not in a motif group | geometric IL_4V88_404 IL_11347.1 | |
| IL_7WTP_022 | 1/C2/389:391, 1/C2/406:408 | Isolated cWH basepair Not in a motif group | geometric IL_4V88_405 IL_51629.2 | |
| IL_7WTP_023 | 1/C2/411:413, 1/C2/420:422 | Isolated near basepair Not in a motif group | geometric IL_3NJ7_003 IL_52767.2 | |
| IL_7WTP_024 | 1/C2/439:441, 1/C2/463:464 | Single bulged U Not in a motif group | geometric IL_4V88_407 IL_83039.13 | |
| IL_7WTP_025 | 1/C2/443:447, 1/C2/460:461 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_7WTP_026 | 1/C2/447:448, 1/C2/458:460 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_7WTP_027 | 1/C2/481:482, 1/C2/505:507 | Single bulged A Not in a motif group | geometric IL_2C4Q_001 IL_37497.2 | |
| IL_7WTP_028 | 1/C2/514:516, 1/C2/536:543 | No text annotation Not in a motif group | ||
| IL_7WTP_029 | 1/C2/517:518, 1/C2/533:535 | Minor groove platform Not in a motif group | geometric IL_4V88_388 IL_93353.1 | |
| IL_7WTP_030 | 1/C2/518:520, 1/C2/532:533 | Minor groove platform Not in a motif group | geometric IL_4V88_412 IL_93353.1 | |
| IL_7WTP_031 | 1/C2/550:557, 1/C2/587:588 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4V88_413 IL_15861.7 | |
| IL_7WTP_032 | 1/C2/557:559, 1/C2/586:587 | Single bulged U Not in a motif group | geometric IL_4FRG_002 IL_83039.13 | |
| IL_7WTP_033 | 1/C2/562:563, 1/C2/580:583 | Multiple bulged bases Not in a motif group | geometric IL_7V9E_001 IL_59677.2 | |
| IL_7WTP_034 | 1/C2/563:565, 1/C2/577:580 | No text annotation Not in a motif group | geometric IL_6IA2_005 IL_95997.1 | |
| IL_7WTP_035 | 1/C2/566:568, 1/C2/575:576 | Single bulged A Not in a motif group | geometric IL_5TBW_060 IL_37497.2 | |
| IL_7WTP_036 | 1/C2/624:626, 1/C2/973:975 | No text annotation Not in a motif group | geometric IL_1Z7F_002 IL_95997.1 | |
| IL_7WTP_037 | 1/C2/627:631, 1/C2/968:972 | tSH-tHW-tHS Not in a motif group | geometric IL_4V88_418 IL_17136.1 | |
| IL_7WTP_038 | 1/C2/646:648, 1/C2/686:688 | No text annotation Not in a motif group | geometric IL_4V88_419 IL_95997.1 | |
| IL_7WTP_039 | 1/C2/746:747, 1/C2/802:805 | Major groove minor groove platform; mini C-loop Not in a motif group | geometric IL_4V88_423 IL_09061.6 | |
| IL_7WTP_040 | 1/C2/748:750, 1/C2/799:801 | No text annotation Not in a motif group | geometric IL_5J7L_326 IL_95997.1 | |
| IL_7WTP_041 | 1/C2/751:759, 1/C2/791:798 | No text annotation Not in a motif group | geometric IL_4V88_425 IL_69091.1 | |
| IL_7WTP_042 | 1/C2/819:822, 1/C2/850:852 | No text annotation Not in a motif group | geometric IL_4V88_426 IL_95997.1 | |
| IL_7WTP_043 | 1/C2/865:866, 1/C2/962:965 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4V88_428 IL_50694.2 | |
| IL_7WTP_044 | 1/C2/868:869, 1/C2/958:960 | Single bulged U Not in a motif group | geometric IL_7KVT_002 IL_83039.13 | |
| IL_7WTP_045 | 1/C2/871:874, 1/C2/953:956 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_7WTP_046 | 1/C2/874:878, 1/C2/950:953 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_431 IL_30621.2 | |
| IL_7WTP_047 | 1/C2/885:888, 1/C2/924:927 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_432 IL_30621.2 | |
| IL_7WTP_048 | 1/C2/893:895, 1/C2/917:919 | No text annotation Not in a motif group | geometric IL_6IA2_005 IL_95997.1 | |
| IL_7WTP_049 | 1/C2/895:899, 1/C2/910:917 | Kink-turn Not in a motif group | geometric IL_4V88_434 IL_45067.2 | |
| IL_7WTP_050 | 1/C2/985:990, 1/C2/1014:1016 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_7WTP_051 | 1/C2/990:994, 1/C2/1010:1014 | tSH-tHW-tHS Not in a motif group | geometric IL_4V88_436 IL_17136.1 | |
| IL_7WTP_052 | 1/C2/1034:1036, 1/C2/1095:1101 | No text annotation Not in a motif group | geometric IL_4V88_437 IL_19557.3 | |
| IL_7WTP_053 | 1/C2/1041:1044, 1/C2/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_438 IL_30621.2 | |
| IL_7WTP_054 | 1/C2/1051:1053, 1/C2/1066:1067 | Single bulged U Not in a motif group | geometric IL_4V88_439 IL_83039.13 | |
| IL_7WTP_055 | 1/C2/1111:1118, 1/C2/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | geometric IL_4V88_440 IL_24606.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7WTP_056 | No text annotation | ||
| IL_7WTP_057 | No text annotation | ||
| IL_7WTP_058 | No text annotation | ||
| IL_7WTP_059 | Tandem non-canonical cWW pairs | ||
| IL_7WTP_060 | No text annotation | ||
| IL_7WTP_061 | No text annotation | ||
| IL_7WTP_062 | No text annotation | ||
| IL_7WTP_063 | Double sheared | ||
| IL_7WTP_064 | No text annotation | ||
| IL_7WTP_065 | Tandem non-canonical cWW pairs | ||
| IL_7WTP_066 | Triple sheared | ||
| IL_7WTP_067 | Isolated cWH basepair | ||
| IL_7WTP_068 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7WTP_001 | 1/C2/41:42, 1/C2/433:439, 1/C2/464:466 | No text annotation Not in a motif group | ||
| J3_7WTP_002 | 1/C2/633:635, 1/C2/861:865, 1/C2/965:966 | No text annotation Not in a motif group | ||
| J3_7WTP_003 | 1/C2/760:763, 1/C2/773:775, 1/C2/785:790 | No text annotation Not in a motif group | homologous J3_8C3A_035 NA | |
| J3_7WTP_004 | 1/C2/881:884, 1/C2/928:936, 1/C2/943:947 | No text annotation Not in a motif group | ||
| J3_7WTP_005 | 1/C2/1037:1039, 1/C2/1079:1083, 1/C2/1090:1094 | No text annotation Not in a motif group | homologous J3_8C3A_037 NA |
Problematic loops
No problematic loops
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