RNA 3D Hub //

5ZEU Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5ZEU_0011/a/16:26No text annotation
homologous
HL_5J7L_001
HL_89881.5
HL_5ZEU_0021/a/82:87No text annotation
HL_5ZEU_0031/a/155:160GNRA
homologous
HL_5J7L_003
HL_37824.7
HL_5ZEU_0041/a/191:196No text annotation
HL_5ZEU_0051/a/213:218No text annotation
geometric
HL_2Y9H_003
HL_75660.5
HL_5ZEU_0061/a/259:267GNRA related
homologous
HL_4LFB_006
HL_84299.4
HL_5ZEU_0071/a/296:301GNRA
homologous
HL_4LFB_007
HL_37824.7
HL_5ZEU_0081/a/320:333No text annotation
HL_5ZEU_0091/a/342:347UNCG
homologous
HL_4LFB_009
HL_34617.5
HL_5ZEU_0101/a/379:384GNRA
homologous
HL_4LFB_010
HL_37824.7
HL_5ZEU_0111/a/419:424UNCG
homologous
HL_5J7L_011
HL_34617.5
HL_5ZEU_0121/a/454:459No text annotation
geometric
HL_5TBW_006
NA
HL_5ZEU_0131/a/502:507No text annotation
geometric
HL_5J7L_143
HL_75660.5
HL_5ZEU_0141/a/597:603No text annotation
homologous
HL_5J7L_014
HL_10453.3
HL_5ZEU_0151/a/669:678No text annotation
homologous
HL_4LFB_015
HL_75293.5
HL_5ZEU_0161/a/706:711GNRA
homologous
HL_5J7L_016
HL_37824.7
HL_5ZEU_0171/a/766:776No text annotation
homologous
HL_5J7L_017
HL_75293.5
HL_5ZEU_0191/a/844:849GNRA
homologous
HL_4LFB_019
HL_37824.7
HL_5ZEU_0201/a/879:884GNRA
homologous
HL_4LFB_020
HL_37824.7
HL_5ZEU_0211/a/945:954No text annotation
homologous
HL_5J7L_021
HL_50779.4
HL_5ZEU_0221/a/995:1000GNRA
homologous
HL_4LFB_022
HL_37824.7
HL_5ZEU_0231/a/1009:1015No text annotation
homologous
HL_6CZR_094
NA
HL_5ZEU_0241/a/1056:1061GNRA
homologous
HL_4LFB_024
HL_37824.7
HL_5ZEU_0251/a/1069:1076T-loop related
homologous
HL_4LFB_025
HL_77436.5
HL_5ZEU_0261/a/1114:1121No text annotation
homologous
HL_6CZR_097
NA
HL_5ZEU_0271/a/1146:1152GNRA
homologous
HL_4LFB_027
HL_37824.7
HL_5ZEU_0281/a/1246:1251GNRA
homologous
HL_4LFB_028
HL_37824.7
HL_5ZEU_0291/a/1296:1305T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_02887.3
HL_5ZEU_0301/a/1338:1349No text annotation
homologous
HL_4LFB_030
HL_06226.4
HL_5ZEU_0311/a/1433:1436Externally structured
geometric
HL_8C3A_022
NA
HL_5ZEU_0321/a/1499:1504GNRA
homologous
HL_4LFB_032
HL_37824.7
HL_5ZEU_0331/v/13:23tRNA D-loop
homologous
HL_1QF6_001
HL_20811.4
HL_5ZEU_0341/v/32:40tRNA anticodon loop
homologous
HL_6CFJ_107
HL_06059.5
HL_5ZEU_0351/v/54:62T-loop with 2 stacked bulged bases
homologous
HL_4WJ4_003
HL_28252.6

Problematic loops

#loop idProblemSequence
HL_5ZEU_018No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5ZEU_0011/a/34:36,
1/a/532:533		Single bulged G
homologous
IL_6CZR_113
NA
IL_5ZEU_0021/a/48:49,
1/a/396:398		Single bulged A
homologous
IL_4LFB_002
IL_31462.5
IL_5ZEU_0031/a/51:56,
1/a/359:361		No text annotation
homologous
IL_5J7L_003
IL_14177.2
IL_5ZEU_0041/a/58:60,
1/a/356:357		Minor groove platform
homologous
IL_5J7L_004
IL_51454.2
IL_5ZEU_0051/a/67:70,
1/a/99:100		Multiple bulged bases
homologous
IL_4LFB_005
IL_82107.4
IL_5ZEU_0061/a/71:73,
1/a/95:98		Minor groove platform with extra cWW
homologous
IL_5J7L_006
IL_90351.1
IL_5ZEU_0071/a/74:77,
1/a/93:94		Minor groove platform
geometric
IL_5J7L_007
IL_15052.4
IL_5ZEU_0081/a/77:78,
1/a/91:93		Major groove platform
geometric
IL_4V9F_082
IL_48076.6
IL_5ZEU_0091/a/125:128,
1/a/231:232		Multiple bulged bases
homologous
IL_4LFB_007
IL_33761.2
IL_5ZEU_0101/a/129:133,
1/a/227:230		No text annotation
homologous
IL_4LFB_008
IL_64231.5
IL_5ZEU_0111/a/144:150,
1/a/165:172		tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
IL_80604.6
IL_5ZEU_0121/a/187:188,
1/a/199:201		No text annotation
IL_5ZEU_0131/a/242:247,
1/a/277:284		Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
IL_46174.3
IL_5ZEU_0141/a/249:252,
1/a/274:275		No text annotation
homologous
IL_4LFB_012
IL_47074.2
IL_5ZEU_0151/a/292:293,
1/a/304:308		C-loop
homologous
IL_4LFB_013
IL_03109.3
IL_5ZEU_0161/a/367:369,
1/a/392:393		Single bulged U
homologous
IL_4LFB_014
IL_89505.4
IL_5ZEU_0171/a/371:375,
1/a/389:390		C-loop
geometric
IL_5J7L_018
IL_03109.3
IL_5ZEU_0181/a/375:376,
1/a/387:389		Single bulged G
homologous
IL_4LFB_016
IL_00225.13
IL_5ZEU_0191/a/409:416,
1/a/427:433		No text annotation
homologous
IL_4LFB_017
IL_28026.3
IL_5ZEU_0201/a/440:442,
1/a/472:477		No text annotation
homologous
IL_5J7L_021
IL_33323.1
IL_5ZEU_0211/a/446:450,
1/a/463:468		6x5 Sarcin-Ricin; G-bulge
geometric
IL_4LFB_018
IL_88269.4
IL_5ZEU_0221/a/450:453,
1/a/460:463		No text annotation
IL_5ZEU_0231/a/484:491,
1/a/520:521		SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_41203.4
IL_5ZEU_0241/a/495:501,
1/a/508:516		Kink-turn related
geometric
IL_4V88_415
NA
IL_5ZEU_0251/a/549:555,
1/a/862:863		No text annotation
homologous
IL_4LFB_022
IL_38186.6
IL_5ZEU_0261/a/560:564,
1/a/737:741		tSH-tHW-tHS
homologous
IL_5J7L_027
IL_17136.7
IL_5ZEU_0271/a/574:576,
1/a/624:625		Major groove platform
homologous
IL_4LFB_024
IL_48076.6
IL_5ZEU_0281/a/577:578,
1/a/620:623		Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_68140.4
IL_5ZEU_0291/a/585:591,
1/a/609:613		No text annotation
geometric
IL_8C3A_433
NA
IL_5ZEU_0301/a/634:635,
1/a/731:734		Major groove platform; stack outside cWW
geometric
IL_5J7L_031
IL_50694.7
IL_5ZEU_0311/a/637:638,
1/a/727:729		Major groove platform
homologous
IL_4LFB_028
IL_48076.6
IL_5ZEU_0321/a/642:646,
1/a/720:723		Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
IL_85033.2
IL_5ZEU_0681/a/653:657,
1/a/693:697		Triple non-canonical cWW pairs
homologous
IL_4LFB_065
IL_49751.4
IL_5ZEU_0341/a/664:668,
1/a/679:686		Kink-turn
homologous
IL_5J7L_035
IL_01488.3
IL_5ZEU_0351/a/754:758,
1/a/784:785		Left turn
homologous
IL_5J7L_036
IL_29346.2
IL_5ZEU_0361/a/759:763,
1/a/779:783		tSH-tHW-tHS
homologous
IL_4LFB_033
IL_17136.7
IL_5ZEU_0371/a/869:876,
1/a/887:892		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
IL_41756.4
IL_5ZEU_0381/a/904:905,
1/a/1376:1378		Single bulged A
homologous
IL_4LFB_035
IL_31462.5
IL_5ZEU_0391/a/907:909,
1/a/1373:1374		Single bulged G
homologous
IL_4LFB_036
IL_00225.13
IL_5ZEU_0401/a/915:917,
1/a/1363:1367		Minor groove platform
homologous
IL_5J7L_041
IL_47078.3
IL_5ZEU_0411/a/935:936,
1/a/1207:1209		Minor groove platform
homologous
IL_4LFB_038
IL_51454.2
IL_5ZEU_0421/a/975:979,
1/a/1024:1025		Minor groove platform
geometric
IL_4LFB_039
IL_47078.3
IL_5ZEU_0431/a/984:985,
1/a/1017:1019		Single stack bend
geometric
IL_4WF9_007
IL_90729.1
IL_5ZEU_0441/a/1028:1030,
1/a/1189:1190		Single bulged U
homologous
IL_5J7L_046
IL_89505.4
IL_5ZEU_0451/a/1032:1036,
1/a/1185:1187		Isolated cWS basepair
homologous
IL_4LFB_044
IL_76319.5
IL_5ZEU_0461/a/1037:1038,
1/a/1180:1184		Minor groove platform
homologous
IL_5J7L_048
IL_95583.2
IL_5ZEU_0471/a/1040:1041,
1/a/1176:1178		Single bulged A
homologous
IL_5J7L_049
IL_31462.5
IL_5ZEU_0481/a/1041:1043,
1/a/1174:1176		Isolated non-canonical cWW pair
geometric
IL_5J7L_050
IL_28037.2
IL_5ZEU_0491/a/1104:1108,
1/a/1125:1130		No text annotation
homologous
IL_5J7L_051
IL_06691.1
IL_5ZEU_0501/a/1109:1112,
1/a/1123:1124		Minor groove platform
homologous
IL_5J7L_052
IL_15052.4
IL_5ZEU_0511/a/1139:1142,
1/a/1156:1162		No text annotation
geometric
IL_5J7L_053
IL_42032.1
IL_5ZEU_0521/a/1228:1234,
1/a/1265:1272		No text annotation
homologous
IL_5J7L_054
IL_09129.2
IL_5ZEU_0531/a/1236:1239,
1/a/1258:1263		180 degree turn
homologous
IL_4LFB_052
IL_11344.2
IL_5ZEU_0541/a/1240:1244,
1/a/1253:1257		Triple sheared
homologous
IL_5J7L_056
IL_17948.2
IL_5ZEU_0551/a/1285:1290,
1/a/1311:1316		No text annotation
geometric
IL_4LFB_055
IL_85536.2
IL_5ZEU_0561/a/1382:1384,
1/a/1485:1488		No text annotation
geometric
IL_4V88_463
NA
IL_5ZEU_0571/a/1384:1387,
1/a/1481:1485		No text annotation
geometric
IL_4V88_464
NA
IL_5ZEU_0581/a/1388:1390,
1/a/1478:1480		Isolated non-canonical cWW pair
geometric
IL_4WF9_020
IL_87907.2
IL_5ZEU_0591/a/1390:1392,
1/a/1475:1478		Isolated non-canonical cWW pair
geometric
IL_3TD0_005
IL_57744.1
IL_5ZEU_0601/a/1395:1397,
1/a/1470:1472		Isolated non-canonical cWW pair
homologous
IL_5J7L_061
IL_87907.2
IL_5ZEU_0611/a/1399:1402,
1/a/1465:1468		Double sheared
homologous
IL_5J7L_062
IL_09705.15
IL_5ZEU_0621/a/1407:1410,
1/a/1457:1460		Tandem non-canonical cWW pairs
geometric
IL_5TBW_100
NA
IL_5ZEU_0631/a/1413:1418,
1/a/1450:1454		Triple sheared related
homologous
IL_5J7L_063
IL_80231.1
IL_5ZEU_0641/a/1418:1420,
1/a/1448:1450		Isolated non-canonical cWW pair
geometric
IL_4LFB_063
IL_87907.2
IL_5ZEU_0651/a/1423:1426,
1/a/1443:1445		Isolated tHS basepair with bulges
geometric
IL_7RQB_082
NA
IL_5ZEU_0661/a/1428:1431,
1/a/1439:1441		No text annotation
homologous
IL_5J7L_065
IL_31531.3
IL_5ZEU_0671/a/1432:1433,
1/a/1436:1438		Single bulged U
geometric
IL_8C3A_053
NA

Problematic loops

#loop idProblemSequence
IL_5ZEU_033No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5ZEU_0011/a/50:51,
1/a/361:367,
1/a/393:395		No text annotation
homologous
J3_5J7L_001
J3_67856.4
J3_5ZEU_0141/a/50:56,
1/a/359:367,
1/a/393:395		No text annotation
homologous
J3_4LFB_014
J3_46317.4
J3_5ZEU_0021/a/566:568,
1/a/631:634,
1/a/734:735		No text annotation
geometric
J3_4LFB_011
J3_56052.5
J3_5ZEU_0151/a/566:568,
1/a/631:635,
1/a/731:735		No text annotation
homologous
J3_4LFB_015
J3_17385.4
J3_5ZEU_0031/a/652:653,
1/a/697:705,
1/a/712:714		No text annotation
homologous
J3_6CZR_017
NA
J3_5ZEU_0041/a/806:809,
1/a/839:843,
1/a/850:856		No text annotation
homologous
J3_5J7L_004
J3_85054.4
J3_5ZEU_0051/a/918:921,
1/a/1326:1332,
1/a/1355:1362		No text annotation
homologous
J3_4LFB_002
J3_25303.4
J3_5ZEU_0061/a/925:928,
1/a/1216:1218,
1/a/1319:1322		No text annotation
homologous
J3_4LFB_003
J3_52655.4
J3_5ZEU_0071/a/937:944,
1/a/955:966,
1/a/1202:1206		No text annotation
homologous
J3_4LFB_004
J3_83516.4
J3_5ZEU_0081/a/972:975,
1/a/1025:1027,
1/a/1191:1196		No text annotation
homologous
J3_4LFB_005
J3_82572.1
J3_5ZEU_0161/a/972:979,
1/a/1024:1027,
1/a/1191:1196		No text annotation
homologous
J3_4LFB_016
J3_76475.2
J3_5ZEU_0171/a/985:989,
1/a/1006:1008,
1/a/1016:1017		No text annotation
J3_5ZEU_0101/a/1043:1048,
1/a/1087:1093,
1/a/1168:1174		No text annotation
homologous
J3_4LFB_007
J3_08394.3
J3_5ZEU_0111/a/1053:1054,
1/a/1063:1067,
1/a/1078:1082		No text annotation
homologous
J3_5J7L_009
J3_76043.3
J3_5ZEU_0121/a/1096:1098,
1/a/1136:1139,
1/a/1162:1165		No text annotation
homologous
J3_5J7L_010
J3_82365.4
J3_5ZEU_0181/a/1096:1098,
1/a/1136:1142,
1/a/1156:1165		No text annotation
homologous
J3_5J7L_054
J3_17791.2
J3_5ZEU_0131/a/1218:1222,
1/a/1278:1285,
1/a/1316:1319		No text annotation
homologous
J3_4LFB_009
J3_37047.6
J4_5ZEU_0011/a/111:119,
1/a/238:240,
1/a/286:289,
1/a/311:312		No text annotation
J4_5ZEU_0021/a/139:141,
1/a/175:181,
1/a/207:212,
1/a/219:221		No text annotation
homologous
J4_5J7L_002
J4_01665.1
J4_5ZEU_0031/a/555:557,
1/a/744:749,
1/a/790:801,
1/a/861:862		No text annotation
homologous
J4_5J7L_003
J4_61885.6
J4_5ZEU_0051/v/7:10,
1/v/26:28,
1/v/44:50,
1/v/66:67		No text annotation
homologous
J4_9DFC_015
J4_70449.27
J5_5ZEU_0011/a/40:43,
1/a/403:406,
1/a/436:440,
1/a/477:480,
1/a/525:528		No text annotation
homologous
J5_5J7L_001
J5_92941.1
J5_5ZEU_0021/a/40:43,
1/a/403:406,
1/a/436:442,
1/a/472:480,
1/a/525:528		No text annotation
homologous
J5_5J7L_002
J5_67416.1
J5_5ZEU_0031/a/62:65,
1/a/102:109,
1/a/314:316,
1/a/337:339,
1/a/350:354		No text annotation
homologous
J5_4LFB_002
J5_59910.6

Problematic loops

#loop idProblemSequence
J3_5ZEU_009No text annotation
J4_5ZEU_004No text annotation

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