7OHV Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7OHV_005 | 1/1/194:201 | No text annotation Not in a motif group | homologous HL_8C3A_005 HL_89380.2 | |
| HL_7OHV_006 | 1/1/208:212 | No text annotation Not in a motif group | homologous HL_5TBW_006 HL_98984.2 | |
| HL_7OHV_007 | 1/1/216:224 | No text annotation Not in a motif group | homologous HL_8C3A_007 HL_08002.8 | |
| HL_7OHV_013 | 1/1/599:604 | GNRA Not in a motif group | homologous HL_5TBW_013 HL_42097.1 | |
| HL_7OHV_045 | 1/1/3194:3197 | No text annotation Not in a motif group | homologous HL_5TBW_068 HL_98426.1 | |
| HL_7OHV_053 | 1/6/11:17 | No text annotation Not in a motif group | ||
| HL_7OHV_054 | 1/6/36:43 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7OHV_001 | No text annotation | ||
| HL_7OHV_002 | No text annotation | ||
| HL_7OHV_003 | No text annotation | ||
| HL_7OHV_004 | No text annotation | ||
| HL_7OHV_008 | No text annotation | ||
| HL_7OHV_009 | No text annotation | ||
| HL_7OHV_010 | No text annotation | ||
| HL_7OHV_011 | No text annotation | ||
| HL_7OHV_012 | No text annotation | ||
| HL_7OHV_014 | No text annotation | ||
| HL_7OHV_015 | No text annotation | ||
| HL_7OHV_016 | GNRA | ||
| HL_7OHV_017 | GNRA | ||
| HL_7OHV_018 | No text annotation | ||
| HL_7OHV_019 | No text annotation | ||
| HL_7OHV_020 | No text annotation | ||
| HL_7OHV_021 | No text annotation | ||
| HL_7OHV_022 | No text annotation | ||
| HL_7OHV_023 | No text annotation | ||
| HL_7OHV_024 | No text annotation | ||
| HL_7OHV_025 | No text annotation | ||
| HL_7OHV_026 | No text annotation | ||
| HL_7OHV_027 | No text annotation | ||
| HL_7OHV_028 | No text annotation | ||
| HL_7OHV_029 | No text annotation | ||
| HL_7OHV_030 | No text annotation | ||
| HL_7OHV_031 | No text annotation | ||
| HL_7OHV_032 | No text annotation | ||
| HL_7OHV_033 | No text annotation | ||
| HL_7OHV_034 | No text annotation | ||
| HL_7OHV_035 | No text annotation | ||
| HL_7OHV_036 | No text annotation | ||
| HL_7OHV_037 | No text annotation | ||
| HL_7OHV_038 | No text annotation | ||
| HL_7OHV_039 | No text annotation | ||
| HL_7OHV_040 | No text annotation | ||
| HL_7OHV_041 | No text annotation | ||
| HL_7OHV_042 | No text annotation | ||
| HL_7OHV_043 | No text annotation | ||
| HL_7OHV_044 | No text annotation | ||
| HL_7OHV_046 | No text annotation | ||
| HL_7OHV_047 | No text annotation | ||
| HL_7OHV_048 | No text annotation | ||
| HL_7OHV_049 | No text annotation | ||
| HL_7OHV_050 | No text annotation | ||
| HL_7OHV_051 | No text annotation | ||
| HL_7OHV_052 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7OHV_012 | 1/1/337:339, 1/2/25:26 | Single bulged A Not in a motif group | homologous IL_5TBW_013 IL_37497.2 | |
| IL_7OHV_013 | 1/1/376:379, 1/1/390:403 | No text annotation Not in a motif group | geometric IL_5TBW_014 IL_60992.6 | |
| IL_7OHV_014 | 1/1/404:411, 1/2/12:19 | No text annotation Not in a motif group | ||
| IL_7OHV_017 | 1/1/512:513, 1/1/577:579 | No text annotation Not in a motif group | homologous IL_8C3A_020 IL_37497.2 | |
| IL_7OHV_018 | 1/1/517:525, 1/1/567:573 | No text annotation Not in a motif group | homologous IL_5TBW_019 IL_23992.1 | |
| IL_7OHV_019 | 1/1/531:538, 1/1/553:561 | No text annotation Not in a motif group | homologous IL_5TBW_020 IL_07703.1 | |
| IL_7OHV_021 | 1/1/680:684, 1/1/696:700 | No text annotation Not in a motif group | homologous IL_5TBW_022 IL_74284.1 | |
| IL_7OHV_027 | 1/1/969:970, 1/1/1111:1113 | No text annotation Not in a motif group | homologous IL_8C3A_038 IL_76488.2 | |
| IL_7OHV_029 | 1/1/983:985, 1/1/1099:1100 | No text annotation Not in a motif group | homologous IL_8C3A_040 IL_00225.2 | |
| IL_7OHV_030 | 1/1/1120:1122, 1/1/1136:1138 | No text annotation Not in a motif group | homologous IL_8C3A_049 IL_95997.1 | |
| IL_7OHV_031 | 1/1/1167:1171, 1/1/1328:1332 | No text annotation Not in a motif group | homologous IL_8C3A_051 IL_89002.2 | |
| IL_7OHV_032 | 1/1/1173:1180, 1/1/1325:1326 | No text annotation Not in a motif group | homologous IL_8C3A_052 IL_15861.7 | |
| IL_7OHV_033 | 1/1/1180:1182, 1/1/1324:1325 | No text annotation Not in a motif group | homologous IL_8C3A_053 IL_83039.13 | |
| IL_7OHV_040 | 1/1/1376:1378, 1/1/1428:1431 | No text annotation Not in a motif group | homologous IL_8C3A_061 IL_52767.2 | |
| IL_7OHV_041 | 1/1/1385:1387, 1/1/1420:1421 | No text annotation Not in a motif group | homologous IL_8C3A_062 IL_37497.2 | |
| IL_7OHV_072 | 1/1/3164:3166, 1/1/3284:3286 | No text annotation Not in a motif group | homologous IL_8C3A_130 IL_95997.1 | |
| IL_7OHV_074 | 1/1/3177:3179, 1/1/3210:3211 | Single bulged A Not in a motif group | homologous IL_5TBW_123 IL_37497.2 | |
| IL_7OHV_075 | 1/1/3179:3188, 1/1/3204:3210 | No text annotation Not in a motif group | geometric IL_5TBW_124 IL_15174.1 | |
| IL_7OHV_076 | 1/1/3193:3194, 1/1/3197:3199 | Single bulged U Not in a motif group | geometric IL_5TBW_125 IL_83039.13 | |
| IL_7OHV_088 | 1/6/26:27, 1/6/51:54 | Multiple bulged bases Not in a motif group | geometric IL_4V88_392 IL_44546.1 | |
| IL_7OHV_089 | 1/6/30:34, 1/6/45:48 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_7OHV_001 | No text annotation | ||
| IL_7OHV_002 | No text annotation | ||
| IL_7OHV_003 | No text annotation | ||
| IL_7OHV_004 | tSH-tHW-tHH-tHS | ||
| IL_7OHV_005 | No text annotation | ||
| IL_7OHV_006 | No text annotation | ||
| IL_7OHV_007 | No text annotation | ||
| IL_7OHV_008 | Single bulged A | ||
| IL_7OHV_009 | No text annotation | ||
| IL_7OHV_010 | Major groove platform | ||
| IL_7OHV_011 | No text annotation | ||
| IL_7OHV_015 | No text annotation | ||
| IL_7OHV_016 | No text annotation | ||
| IL_7OHV_020 | No text annotation | ||
| IL_7OHV_022 | No text annotation | ||
| IL_7OHV_023 | Single bulged A | ||
| IL_7OHV_024 | No text annotation | ||
| IL_7OHV_025 | No text annotation | ||
| IL_7OHV_026 | No text annotation | ||
| IL_7OHV_028 | No text annotation | ||
| IL_7OHV_034 | No text annotation | ||
| IL_7OHV_035 | No text annotation | ||
| IL_7OHV_036 | Single bulged U | ||
| IL_7OHV_037 | No text annotation | ||
| IL_7OHV_038 | No text annotation | ||
| IL_7OHV_039 | No text annotation | ||
| IL_7OHV_042 | Kink-turn | ||
| IL_7OHV_043 | Single bulged A | ||
| IL_7OHV_044 | No text annotation | ||
| IL_7OHV_045 | No text annotation | ||
| IL_7OHV_046 | C-loop | ||
| IL_7OHV_047 | UAA/GAN | ||
| IL_7OHV_048 | Other IL | ||
| IL_7OHV_049 | Isolated tHS basepair with bulges | ||
| IL_7OHV_050 | No text annotation | ||
| IL_7OHV_051 | Triple sheared | ||
| IL_7OHV_052 | No text annotation | ||
| IL_7OHV_053 | No text annotation | ||
| IL_7OHV_054 | No text annotation | ||
| IL_7OHV_055 | No text annotation | ||
| IL_7OHV_056 | No text annotation | ||
| IL_7OHV_057 | No text annotation | ||
| IL_7OHV_058 | No text annotation | ||
| IL_7OHV_059 | No text annotation | ||
| IL_7OHV_060 | No text annotation | ||
| IL_7OHV_061 | No text annotation | ||
| IL_7OHV_062 | Minor groove platform with intercalation | ||
| IL_7OHV_063 | No text annotation | ||
| IL_7OHV_064 | No text annotation | ||
| IL_7OHV_065 | 8x7 Sarcin-Ricin; G-bulge | ||
| IL_7OHV_066 | No text annotation | ||
| IL_7OHV_067 | No text annotation | ||
| IL_7OHV_068 | No text annotation | ||
| IL_7OHV_069 | No text annotation | ||
| IL_7OHV_070 | No text annotation | ||
| IL_7OHV_071 | Isolated cWS basepair | ||
| IL_7OHV_073 | Tandem non-canonical cWW pairs | ||
| IL_7OHV_077 | No text annotation | ||
| IL_7OHV_078 | No text annotation | ||
| IL_7OHV_079 | Tandem non-canonical cWW pairs | ||
| IL_7OHV_080 | Tandem non-canonical cWW pairs | ||
| IL_7OHV_081 | Single bulged U | ||
| IL_7OHV_082 | No text annotation | ||
| IL_7OHV_083 | No text annotation | ||
| IL_7OHV_084 | No text annotation | ||
| IL_7OHV_085 | Single bulged U | ||
| IL_7OHV_086 | No text annotation | ||
| IL_7OHV_087 | Isolated non-canonical cWW with bulges |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7OHV_003 | 1/1/502:503, 1/1/588:597, 1/1/606:611 | No text annotation Not in a motif group | homologous J3_5TBW_003 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_7OHV_001 | No text annotation | ||
| J3_7OHV_002 | No text annotation | ||
| J3_7OHV_004 | No text annotation | ||
| J3_7OHV_005 | No text annotation | ||
| J3_7OHV_006 | No text annotation | ||
| J3_7OHV_007 | No text annotation | ||
| J3_7OHV_008 | No text annotation | ||
| J3_7OHV_009 | No text annotation |
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