JAR3D
Query RF03087-3.98 completed
Run on Motif Atlas Version 3.98
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
RF03087 ROOL RNA
Input Summary
000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111
000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111122222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222223333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333333444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444444455555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555555556666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666666777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777777788888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888888889999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222222333333333333333333333333333333333333333333333333333333
000000000111111111122222222223333333333444444444455555555556666666666777777777788888888889999999999000000000011111111112222222222333333333344444444445555555555666666666677777777778888888888999999999900000000001111111111222222222233333333334444444444555555555566666666667777777777888888888899999999990000000000111111111122222222223333333333444444444455555555556666666666777777777788888888889999999999000000000011111111112222222222333333333344444444445555555555666666666677777777778888888888999999999900000000001111111111222222222233333333334444444444555555555566666666667777777777888888888899999999990000000000111111111122222222223333333333444444444455555555556666666666777777777788888888889999999999000000000011111111112222222222333333333344444444445555555555666666666677777777778888888888999999999900000000001111111111222222222233333333334444444444555555555566666666667777777777888888888899999999990000000000111111111122222222223333333333444444444455555555556666666666777777777788888888889999999999000000000011111111112222222222333333333344444444445555555555666666666677777777778888888888999999999900000000001111111111222222222233333333334444444444555555555566666666667777777777888888888899999999990000000000111111111122222222223333333333444444444455555555556666666666777777777788888888889999999999000000000011111111112222222222333333333344444444445555
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........................(((((..................(((((............)))))...)))))...((((.((........................(((..(((.....(..((.((..((((....................))))..)).)).)......).))..))).(((.((.(...((((.(................................)).))).).)).)))....(((((.................................)))))...............................................))).)).)..............................................................((((.((.......................((((.....................................))))...............((((((..........((((.............(((..................))).....))))................................................))))))............................................................................................................................)))))).....................(((((..................)))))............................(.........((((((........................................................................................................................))))))........)...(.(((..........................)).)).((((................................((......................................................................)))....((((((((..(((.(((..((((.........))))..)))....................................................))......))))))))..))))...................................................((((...................))))......................
>URS0000D6BDF8_12908/1-591
CCCUCACUGCUUA--UAUGAGGAAGCGUG-UGU--------AUA---AACCU--AUGACA----GGGUU---CACGCC--AUUC-AAUCUAUAAAUCGAC-----------AG---CGAC----G--UU-CU--GCCG-----------G-GAUA--CCGAC--GG-AA-UU-----U-CAGA-CA-AGC-CA-A---AG---G-------------GUAA---------------UA-GCU-U-UG-GUU-GACCUACACC--------GAAAAGGAAAUA---------GGUGUCG------UU-------------------------------------GGUUG-AG-UGAGAAAGCA-------UUAAAUU-------A----UUGAUAAAGUAGGCAAC--AAUGUCAG-CAG-AAUUACAAU-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGCCGGCGGAGAUUUAGGCGCUCCGUGUAAAGCAGUCUCACGCUAAUCUGGCAGACAUGUCAGGGAACCACGAGAUAAAUGUAAGUUA-----------------------AAA-UUCUGG-----UCCACGAUGAU-----CCGCA----GAAA----------UGCGG-GUAUAA-CUGAUACG-----UGCCGUACGAGUA----GCCCAAAA--CGUGGAAAUUACAAUACAGGUUUUUGCAUAA-----------------------------------------------------CCAUCAAUCGCAUUG-----------------UUGGGU----GAAAGUUGG-AGG----------A--UAAAU-------CCU-CACCAAGAUUUAAA-------------------------------------------------------------------------------------------------------UUAAGCAAG-AGA--UAU--AAGGCCGCU----CCUU--AUA----------------------------------------------------UUGCGA--CUUGCUUAAACUUG-UGACU-GAAUA---AUCAAC-----------GAUUUAACAAGUUCAA---GUGGUUAAUAG------------CCAC-CCG-CAUAACUAGGAAUAUAG
>URS0000D66DD5_575596/1-591
CCCUCACUGCUUA--UAUGAGGAAGCGUG-UGU--------AUA---AACCU--AUGACA----GGGUU---CACGCC--AUUC-AAUCUAUAAAUCGAC------------AG--CGAC----G--UU-CU--GCCG-----------G-GAUA--CCGAC--GG-AA-UU-----U-CAGAC--AAGC-CA-A---AG---G-------------GUAA---------------UA-GCU-U-UG-GUU-GACCUACACC--------GAAAAGGAAAUA---------GGUGUCG-----UUGA--------------------------------------UUG-AG-UGAGAAAGCA-------UUAAAUU-------A----UUGAUAAAGUAGGCAAC--AAUGUCAG-CAG-AAUUACAAU-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UGCCGGCGGAGAUUUAGGCGCUCCGUGUAAAGCAGUCUCACGCUAAUCUGGCAGACAUGUCAGGGAACCACGAGAUAAAUGUAAGUUA-----------------------AAA-UUCUGG-----UCCACGAUGAU-----CCGCA----GAAA----------UGCGG-GUAUAA-CUGAUACG-----UGCCGUACGAGUA----GCCCAAAA--CGUGGAAAUUACAAUACAGGUUUUUGCAUAA-----------------------------------------------------CCAUCAAUCGCAUUG-----------------UUGGGU----GAAAGUUGG-AGG----------A--UAAAU-------CCU-CACCAAGAUUUAAA-------------------------------------------------------------------------------------------------------UUAAGCAAG-AGA--UAU--AAGGCCGCU----CCUU--AUA----------------------------------------------------UUGCGA--CUUGCUUAAACUUG-UGACU-GAAUA---AUCAAC-----------GAUUUAACAAGUUCAA---GUGGUUAAUAG------------CCAC-CCG-CAUAACUAGGAAUAUAG
>URS0000D6B8CE_12908/1-588
GUCCGUCCGUAGUCUUAGGCAAAACCUAUCUGU--------AA----GGGCA--UUGACA----AGCCU-AGGUAGGUGCGUAA-CCUUAAAAUC-----------------CG-UGAAG----C-------------------CGUCCGUGUCU---------------GA-----U-UA--AG-GUAC-UG-A---UUGU-G-------------AUGA---------------CGAUAG-U-AA-GUC---AGCAGGUG--------GAAG-----------------CACUUGU--ACGGU----------------------------------------GGU-UA-CUGCAGCCU--------CAUAUACAU-----GAA--UGACUGAUGUAGAG-----UUCGGUUGGAGC-G-AC--AAG---UAU--U-------UAGC---------------UUGAGAU--------------AGCUA-A----A-----U-CACCUCG---GUAUGA-UU---------------AGG----GUGAGA--------CCU-------AGGAACCGU-----------------------------------------AGGGGUA---------------------------------------------------------------------------------------------------------UUCUCAA-----AGGAA---GCUU------UUGCAGUGACG----CCCAU----GUAA----------GUGGG-AUAUAA-CAACAGAA------CUCGUAUGAGUA----GCCUAAUU-CUGCAACCCUCUUUAGGGUAUGUGUUAGCCAUAUUUUAGGAUGGAAACAUGAAUACAAGAUAU-------------------------AUUUACUCUUG------------------UUAGGU----GAAAGUUGA-UGG-------UC-G--CCGUG-------UCAGUCCAUGCCUUUGAAAAC-----------------------------------------------------------------------------------------------------AGUUCUA------------------------------------------UGUAGUAGGGAGUCGAGAACCUAUGA--------------------GAGU---UAGAACUU-GCACGAAACAUUCUAU--UGUCUGCA--------GUGUAUGUGUG-------GUAGGGCUAAAA--------------ACCC-UUG-CCUAUU-UUAUAAGUUC
>URS0000D6BFAD_12908/1-562
---------GGUUUUAGGCAAAACCUAUC-UGU--------AA----GGGU---GUGACGA----GCCU--AGAUAGG--UACU-UAACCUCUAAUU--------------CGA--UAAG----C--CGUCAGUGUCC-------------GAUA---GGGUACUGAUU-GUG----A-UG--ACGA-------C-U--------------------AGAA---------------------AG--------UCAGCGGGUG--------GAAG-----------------CAUCUGU-GCGUGGGU--------------------------------------UAG-GU-AGCCUC-----------AUAUACAU------GAA--CGACUGAUGUAGAG-----UUCGAUUGGGGA-G-AU--AAG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------UAUCUAAUGCGUGUCAUUAGGUCACCUCGGUAUGACUAGGGUGAGAGCUAGGAACCGUAGAGGUGUUCUCAAGG------------------------------------GAA---UCCU------UUGCAGUGAC-----GUCCUC---GUAA---------GUGGAC--UAUAA-CAGUAGAA------CUCGUAUUAGUA----GCCUAAUA-CUGCAGCCCUUUUUGGGGUUUGUUGUCCAUAUAGUUUAAGAUGGAAACAUAUUACAAGAU----------------------------AUUUACUCUUG------------------UUAGGU----GAAAGUUGA-UGG-------UC-G--CCGAG-------CCAGUCCGUACAUCCAAAAAG-----------------------------------------------------------------------------------------------------GACUCUA------------------------------------------UGUAGUAGGAAGUCGAGAGCCUAUGA--------------------GAGU---UAGAGUCG-GUACGAAACA-UCUAU---UGUCUGCA--------GUGUAUGUGUUG-----GUAGGGCUAAAA--------------ACCC--UU-GCCUAUUU---------
>URS0000D66B34_12908/1-561
---------GGUUUUAGGCAAAACCUGUC-UGU--------AA----GGGU---GUGACGA----GCCU--AGAUAGG--UACU-UAACCUCUAAUU--------------CGA--UAAG----C--CGUCAGUGUUC-------------GAUA---GGGUACUGAUU-GUG----A-UG--ACGA-CU---------------------------AGAA---------------------------AG--UCAGCAGGUG--------GAAG-----------------CAUCUGU-GCGUGGGU--------------------------------------UAG-GU-AGCCUC-----------AUAUACAU------GAA--CGACUGAUGUAGAG-----UUCGAUUGGGGA-G-AU--AAG---UAUC-U-------AAUG---------------CGUGU-----------------CAUU-A----G-----GUCACCU-----C------GGUAUGA----------CUAG--GGUGAGAG------CUAG----GAACCGUAG----------------------------------------------GGGUG---------------------------------------------------------------------------------------------------------UUCUCAA-----AGGAA---UCCU------UUGCAGUGAC-----GUCCUC---GUAA---------GUGGAC--UAUAA-CAGUAGAA------CUCGUAUUAGUA----GCCUAAUA-CUGCAGCCCUUUUGGGGUUUGUUGUCCAUAUAGUUUAAGAUGGAAACAUAUUACAAGAU-----------------------------AUUUACUCUUG------------------UUAGGU----GAAAGUUGA-UGG-------UC-G--CCAAG-------CCAGUCCGUACAUCCAAAAAG-----------------------------------------------------------------------------------------------------GACUCUA------------------------------------------UUUAGUAGGAAGUCGAGAGCCUAUGA--------------------GAGU---UAGAGUCG-GUACGAAACA-UCUAU---UGUCUGCA--------GUGUAUGUGUUG-----GUAGGGCUAAAA--------------ACCC--UU-GCCUAUUU---------
>URS0000D6570B_12908/1-579
AUCCGACCGUAGUCUUAGGUAAAACCUAUCUGU--------AA----GGGU---UUGACAA----GCCU-AGAUAGGUACUUAA-CCUCUAAAUCGAU-----------------AAGCC----G-UCA-GU--GUCC-------------GAUG---GGGU--AC-UGAUU-----G-U----G--AUG-ACG-AUA-------------------GUAA------------------------GU-CA--GCAGGUGG----------AAA--------------------C-ACU-UUGUGCGUG-------------------------------------GGU-UA-GGUAGC-----------CUCAUAUACAU---GAA--CGACUGAUGUAGAG-----UUCGGUUGGGGA-G-AU--AAG---UAUC-U-------AAUG---------------CGUGU-----------------CAUU-A----G-----GUCACCU-----C------GGUAUGA----------UUAGU--GUGAGA------GCUAG----GAACCGUAG----------------------------------------------GGGUG---------------------------------------------------------------------------------------------------------UUCUCAA-----AGGAA---UCCU------UUGCAGUGAC-----GUCCUC---GCAA---------GAGGAC--UAUAA-CAACAGAA------CUCGUAUUAGUA----GCCUAAUAC-UGCAGCCCCUUGGGGUUUGUUGUCCAUAUAGUUUAAGAUGGAAACAUUGAAUCAAG---ACAU------------------------AUUUACUCUUG------------------UUAGGU----GAAAGUUGG-UGG-------UU-G--CCAUG-------CCA-GCCCGUACAUCCGAGAAG----------------------------------------------------------------------------------------------------GACUCUA------------------------------------------UGUAGUAGGAAGUCGAGAGCCUAUGA--------------------GAGU---UAGAGUCGGUACG-AAACA-UCUA---UUGUCUGCA-----GUGUAUAUUGG---------GUAGAGCUAAAA--------------ACUC-UUA-CCUA---UUUUAUUAAG
>URS0000D66442_12908/1-591
AUCCGACCGUGGUUUUAGGCAAAUCCUAUCUGU--------AA----GGGCU--UUGACA----AGUCU-AGAUAGGUGUUUAA-CCUUUAAAUAC---------------CGA--UAAG----C--CGUCCGUGUCC-------------GAUAU--GGGUACGGAUU-GUG----A-UG--ACGA-------C-U--------------------AGAA---------------------AG--------UCAGCAAGUG--------GAAG-----------------CACUUGU-----GCGUA-------------------------------------GGU-UA-AGCAGCCU---------CAUAUACAU-----GAA--AGACUGAUGUAGAG-----UUCGGUUGGAGC-G-AC--AAG---------UACC-UA-GCUU--------------GAGA-----------------UAGU-UA-GGUC--------GCCU-----U------GGUAUGA----------CUAGU--GUGAGAA-----GCUAG----GAACCGUAG----------------------------------------------AGGUA----------------------------------------------------------------------------------------------------------UCUCAAA----AACAA---GCUU------UUGCAGUGAC-----GUCCUC---GUAA---------GUGGAC--UAUAA-CAACAGAA------CUCGUAUUAGUA----GCCUAAUU-CUGCAAUCCCUUGGUUGGGAAGUGUUGUCCAUAUAGUUCAAGAUGGAGACAUGAAUACAAGAUUA-----------------------UAUUACUCUUG------------------UUAGGU----GAACGUUGG-UGG-------UC-G--UCGAG-------CCA-GCCCCUCCUUUGUAAAG-----------------------------------------------------------------------------------------------------GACUCUA------------------------------------------UGUAGUAGGAAGUCGAGAGCCUAUGA--------------------GAGU---UAGAGUCG-GAGAGAAACA-UCUA---UUGUCUGCA-------GUGUAUGUGUG-------GUAGAGCUAAAA--------------ACUC-UUG-CCUAUUUUAUAAGUUCC
>URS0000D6A43E_12908/1-580
UAUAUUAUAGAAGACGCUGCUGAUACGGA-UGU--------AUA---ACGGA--CUGAUAA---UCCUU---UCCGUAA-AUUG-CCUGUAAGUC----------------AGA--UAAG----G--CGAACAGCAAG-------------GAUA---CCUGCUGUUUU-CU-----G-AA--UCU-UGGAGA-U---A------------------UUCU--------------------U-A-UCAGAG-AUAGGUC-----------CAAAA-------------------GACU-UUCUGCCA--------------------------------------GGC-GA-UGUUAG-----------UCAAUGUAUUUC-------AGCGUAAGGCUUUUU----CUGAGCUGGCAA-GCAC--AAU---AAGU-U-GAU----------------------GUGAA----------------------A-AUCA-----GCUUGCA-----UCAG---GGUUUUUGACCUA-AUAUUAAG--GCGGAAAA----CUUAA-UUGGAACCUCAA----------------------------------------------UGUAA---------------------------------------------------------------------------------------------------------UGACCAA-------CAA-GCUUGU------UUGCUGUGAC-----GUAUGC---GAUCAAAA-----GCAUGC--UAUAA-CAGGUCAG-----AAAAGAACGAGUA----GCUUAAUC--GGCAAGAUUAAAUGAUACUAUUAGGUACAAUAUAUA--------------------------------------------------GAACGCACA---------------------UCAAGU----GAAAGUUUA-CGG-------UA-A--GCAAU-------CCG-UUUAGGACUUCGGUA------------------------GGUU-----------------------------CUUUG---------------------------------AACC---CAACGCAAG---------------------------------------AAAGAAGCAUAAAUAGCUAAUCUGUGGGCGGU----------------------CUUGU--UA-UCCUAUGGCU-GAAUA---AAGAAAA-----GAAAAGUA-UGAA---------------------------------------AAG-CAUAUUUUCCUAACGUU
>URS0000D6C6B5_748671/1-581
UAUAUUAUAGAAGACGCUGCUGAUACGGA-UGU--------AUA---ACGGA--CUGAUAA---UCCUU---UCCGUA--AAUU-ACCUGUAAGUC---------------AGA--UAAG----G--CGAACAGCAAG-------------GAUA---CCUGCUGUUUU-CU-----G-AA--UCU-UGGAGA-U---A------------------UUCU--------------------U-A-UCAGAG-AUAGGUC-----------CAAAA-------------------GACU-UUCUGCCA-------------------------------------GGCG-AU-GGUAGUCA---------AUGUAUUUC----------AGCGUAAGGCUUUUU----CUGAGCUGGCAA-GCAC--AAU---AAGU-U-GAU----------------------GUGAA----------------------A-AUCA-----GCUUGCA-----UCAG---GGUUUUUGACCUAAUAAUUAAG--GCGGAAAA----CUUA-AUUGGAACCUCAA----------------------------------------------UGUAA---------------------------------------------------------------------------------------------------------UGACCAA-------CAA-GCUUGU------UUGCUGUGAC-----GUAUGC---GAUCAAAA-----GCAUGC--UAUAA-CAGGUCAG-----AAAAGAACGAGUA----GCUUAAUC--GGCAAGAUUAAAUGAUACUAUUAGGUACAAUAUAUA--------------------------------------------------GAACGCACA---------------------UCAAGU----GAAAGUUUA-CGG-------UA-A--GCAAU-------CCG-UUUAGGACUUCGGUA------------------------GGUU-----------------------------CUUUG---------------------------------AACC---CAACGCAAG---------------------------------------AAAGAAGCAGAAAUAGCUAAUCUGUGGGCGGU----------------------CUUGU--UA-UCCUAUGGCU-GAAUA---AAGAAAA--------GAAAAGUAU---------GAA----------------------------AAG-CAUAUUUUUCUAACGUU
>URS0000D66891_12908/1-580
UAUAUUAUAGAAGACGCUGCUGAUACGGA-UGU--------AUA---ACGGA--CUGAUAA---UCCUU---UCCGUA--AAUU-GCCUGUAAGUC---------------AGA--UAAG----G--CGAACAGCAAG-------------GAUA---CCUGCUGUUUU-CU-----G-AA--UCU-UGGAGA-U---A------------------UUCU--------------------U-A-UCAGAG-AUAGGUC-----------CAAAA-------------------GACU-UUCUGCCAG-------------------------------------GCG-AU-GGUAGUCA---------AUGUAUUUC----------AGCGUAAGGCUUUUU----CUGAGCUGGCAA-GCAC--AAU---AAGU-U-GAU----------------------GUGAA----------------------A-AUCA-----GCUUGCA-----UCAG---GGUUUUUGACCUA-AUAUUAAG--GCGGAAAA----CUUAA-UUGGAACCUCAA----------------------------------------------UGUAA---------------------------------------------------------------------------------------------------------UGACCAA-------CAA-GCUUGU------UUGCUGUGAC-----GUAUGC---GAUCAAAA-----GCAUGC--UAUAA-CAGGUCAG-----AAAAGAACGAGUA----GCUUAAUC--GGCAAGAUUAAAUGAUACUAUUAGGUACAAUAUAUA--------------------------------------------------GAACGCACA---------------------UCAAGU----GAAAGUUUA-CGG-------UA-A--GCAAU-------CCG-UUUAGGACUUCGGUA------------------------GGUU-----------------------------CUUUG---------------------------------AACC---CAACGCAAG---------------------------------------AAAGAAGCAUAAAUAGCUAAUCUGUGGGCGGU----------------------CUUGU--UA-UCCUAUGGCU-GAAUA---AAGAAAA--------GAAAAGUAU---------GAA----------------------------AAG-CAUAUUUUCCUAACGUU
>URS0000D6A595_12908/1-556
AUCCUACUCCCCGAAUACACCAAAGGGCA-UAA--------UU----CCAC---UUAGCAA----GUGG---UGCCUGG-GUUA-UCUUGUUAAGACC-------------UGC--AAUU----G--UGGUA--UAGG-------------GAUA---CCUU--UACUA-UU-----G-UU--G---UUC---------------------------CAGA---------------------------GUG-G-AGACCG----------GUGAAA-----------------UGGUU-CAGGCUGA--------------------------------------GAU-AA-CUUGCGA----------GAC--GGUGC----GA---AAAACAAGGUGCUC-----UGCGAAUCGUCG-CAAC--AAG---UGUC-A-GUG-AACGGG---------------AUUCG-----------------UCCU-AUAGCU-----GGCCGCAAC---AGUGAA-UCU--------------GAG----GUGACA--------CUU-----AGGGAACCAAA-----------------------------------------GUUGUG-----------------------------------------------------------------------------------------------------------UGUCGAA------CAA-UGCGAU------UGUAGUUGAU-----GUUGCG---GUAA---------CGUAAC--UAUAA-GAUUUUCG------GAGGCAC-----UCAGGCAAAAU---CUACGUUGGAUAUAACGUUUACGUAUGGGUAAAAAAAUCUA------------------------------------------------UUAUGUGGU------------------GCUUGUUUGA----GUUGG-GGU-------UG----UUGAU-------ACU-UCCCACGCUUUAAAAA--------------------------------------------------------------------------------------------------------GGCUAG-----------------------------------------GUCAACCGGAGUUGCAAACCGGGG--------------------CCAUUC--CUAGUCAG--CGUG-UAACCUUAACA---GUUUGCA-------GCGCUAAGUCGA-------GUAGGAAAAAC---------------AUCC-UGG-UGUUUCACGGGUGGUAG
>URS0000D662C4_12908/1-471
ACAACCGCAUAUAUUGCCCUAAAACCAUU-UUG--------UAA---UCAGA--ACACCA----UCUGA---AAUGGA--CGUA-AA------------------------CGUGCUGAA----C--AAAAU--AACG-------------GAUA---CGUU--AUCUA-CA-----U-AAGCACG---------------------------------------------------------------------------------------------------------------------------------------------------------------UCU-GC-GGUACA-----------UC-AUAUUGU----UUG--UAGAAAAGGUACACA------CGACUACUCA-ACGC--AAU---AGCA-G-GAG------UU--------------CUAGG----------------AA------CUCU-G---AAAGACA-----AAACGG-CUA--------------UUC--CCGUGGAAC-------GAA-----AUGGGUACGC--------------------------------------------UGCCA---------------------------------------------------------------------------------------------------------AAUCCAAA------UAA-GUUGAG------GUGCGGU--------------------------------------UAUCCAUAGUCUG------UGUG-GUC-----ACGAGCCUAAAUC-CGCACAAAAUUAAAAA--------------------------------------------------------------------CAAUUUUGCUGAAUG-----------------GUAGGUGAGU----G-UGA-AG--------GACA---------------CU-UCCGUAACUCGAC--------------------------------------------------------------------------------------------------------ACGGUACGG-AAGU-CAA--AUGGUAGCU----CCAU--UUG---------------------------------------------------GCUCAGC--CCGUACUA--UUAUGUGACU-GAAUA---UUCUGU--------GCAAUGUAGAUGU-------------UUGUAUAAGCCGUACACUA-----UCG-UGGCGGUGAAAACGUUA
>URS0000D6ABA7_362948/1-544
UUAGUAUAUAAGUGUACCGAUGAAGCUAG-UGG--------AU----GAGGU--GUGACAA---GCCGC---CUAGCCA-UACGACUCUUAAUAACUACU-----------AU---GACG----A--AA-UA--UACG-------------GAUA---CGUU--UA-UU-UU-----U-UCUA-AU-UUC-CA-C---UUGG---------------GUAGUA--------------C-UAA-U-UG-GGA-G-CAACGA----------AAAAAG-----------------UUGUG-UAGAGAGA--------------------------------------AGC-A--AGGGGA-----------CUCAUAUCU-----G----AAACUAAGACACUUGC-----CGUCAGGGAU-UCGC--AAU---AUGC------------------------------------------------------------C-------AUCUUC----A------GUUAAU-----------UAAGG--CUGAUUA-----CCUUA----GGAACCAAAA--------------------------------------------GAAGAA----------------------------------------------------------------------------------------------------------UAUCAAC------UAA-GAAUUC------GUGUCGUGAA-----GUUGUG---GUGA---------CGCAAC--UAUAA-CUGACGAG-----UAAGGUUUGAGUA----GCCAAAAUC-GACAAUCUUACAUUAACUGG----------------------------------------------------------------AACAUUGCACAUG-------------------UUUGGU----GAAAAUUGG-AUAG------GA-A--AAGAU------CUAUGCCCUGAACUUGAAAU------------------------------------------------------------------------------------------------------GCGGACUAG-GU---CGUG-GAAGUUGCU-----AGC-CAUG-----------------------------------------------------AUGUG--CUAGUCUGA-UUCAGUAGUC-UAAUA---AGUCC----------AGAUACAAGA-----------GUAUCCCACGUAAGCCA------AUACGCGU-CGGUUUACAUAAUUUUU
>URS0000D6ABA7_768728/1-544
UUAGUAUAUAAGUGUACCGAUGAAGCUAG-UGG--------AU----GAGGU--GUGACAA---GCCGC---CUAGCCA-UACGACUCUUAAUAACUACU-----------AU---GACG----A--AA-UA--UACG-------------GAUA---CGUU--UA-UU-UU-----U-UCUA-AU-UUC-CA-C---UUGG---------------GUAGUA--------------C-UAA-U-UG-GGA-G-CAACGA----------AAAAAG-----------------UUGUG-UAGAGAGA--------------------------------------AGC-A--AGGGGA-----------CUCAUAUCU-----G----AAACUAAGACACUUGC-----CGUCAGGGAU-UCGC--AAU---AUGC------------------------------------------------------------C-------AUCUUC----A------GUUAAU-----------UAAGG--CUGAUUA-----CCUUA----GGAACCAAAA--------------------------------------------GAAGAA----------------------------------------------------------------------------------------------------------UAUCAAC------UAA-GAAUUC------GUGUCGUGAA-----GUUGUG---GUGA---------CGCAAC--UAUAA-CUGACGAG-----UAAGGUUUGAGUA----GCCAAAAUC-GACAAUCUUACAUUAACUGG----------------------------------------------------------------AACAUUGCACAUG-------------------UUUGGU----GAAAAUUGG-AUAG------GA-A--AAGAU------CUAUGCCCUGAACUUGAAAU------------------------------------------------------------------------------------------------------GCGGACUAG-GU---CGUG-GAAGUUGCU-----AGC-CAUG-----------------------------------------------------AUGUG--CUAGUCUGA-UUCAGUAGUC-UAAUA---AGUCC----------AGAUACAAGA-----------GUAUCCCACGUAAGCCA------AUACGCGU-CGGUUUACAUAAUUUUU
>URS0000D6BA83_1423799/1-550
UUAGUAUAUAAGUGUACCGAUGAAGCUAG-UGG--------AUAA--GGU----GUGACAA-----GCC-GCCUAGCCAU-ACGUCUCUUAAUAACUACU-----------AU---GACG----A--AA-UA--UACG-------------GAUA---CGUU--UA-UU-UU-----U-UCUA-AUUUCC-A--C---UUGG---------------GUAGUA--------------C-UAA-U--U-GGGAG-CAACGA----------AAAAAAG----------------UUGUG-UAGAGAGA--------------------------------------AGC-A---AGGGG-----------ACUC--AUAUCU--G----AAACUAAGACACUU-----GCCGUCAGGGAU-UCGC--AAU---AUAC------------------------------------------------------------C-------AUCUUU----A------GUUAAU-----------UAAGG--CUGAUUA-----CCUUA----GGAACCAAC---------------------------------------------GAAGAA----------------------------------------------------------------------------------------------------------UAUCAAU------UAA-GAAUUC------GUGUCGUGAA-----GUUGUG---GUGA---------UGCAAC--UAUAA-CUGACGAG-----UAAGGUUUGAGUA----GCCAAAAUC-GACAAUCUUAUAUUAACAGAAAUA------------------------------------------------------------UGGACAUUACACAUG-----------------UUUGGU----GAAAAUUGG-AUAG------GA-A--AAGGU------CUAUGCCCUGAACUUGAAAU------------------------------------------------------------------------------------------------------GCGGACUAG-GU---CAUG-GAAGUUGCU----A-GC-CAUG-----------------------------------------------------AUGUG--CUAGUCUGA-UUCAGUAGUC-UAAUA---AGUCC-------AGAUACAAGAGUAUC---------------CCACGUAAGCCAAUACG-----CGU-CGGUUUACAUAAUUUUU
>URS0000D67A33_12908/1-558
UACGACUAACUUCUCAAAUACAAUGCUGG-UGG--------AGA---GCAG---CUAACAA----CUGU--GCCAGCG--GCGC-UCGGAAGACG------------------A--UGAG----CUGAACCG--CAAG-------------GAUA---CUUG--CGGCA-AG-----G-CG----------------------------------------------------------------------------------------------------------------------ACGGACUAAUCACCCCUGUGUCAA----------------------GAG-CG-UGCACU-----------CUCU--CUCAAUG-UA---AACCAAAUGCAACA-----UAUAGGUCGUGA-GCAG--AAU---AUGG-G-------GCGGU--------------UUAAUC---------------GCCGC-A----C-----CAAUCUGAG---UUAG---GUGGU------------AGC----CCGCAA--------GCG-----CCACAAAC--------------------------------------------CUUAGAA---------------------------------------------------------------------------------------------------------A-CGCAC-------CAA-GCUC-U------UAGCCGUGAC-----GGGCA----GAAA----------UGUCC--UAUAA-GACCUUAA-UGAUUUGGGUAA-----UCUCGCUUAA----GGCUAGCUCAAACUAGAAAAAUUUGACGAACCUUAGAAUAGGUAAUUAAC-----------------------------------UUUUAUACGGAAC------------------GUAGGUGAGA----UUUGC-GGG-------UA-AAGGUAAU-------CCC-GCCGCAGACCAG---------------------------UCC------------------------------GCAA-----------------------------------GGG---UGGGGCUUC-AAGC-UGU--CGAGUCGCU----CUCG--GCA---------------------------------------------------UCUCCGU--GGAGUCUC--CUGCGUGGCA-GAA-----CGGAG------CAUUGAAUAAGAGG--------GUACUCGGAAG---------------UCUG-AGA-GGACGACGAGUGGAAAG
>URS0000D6AC61_12908/1-559
ACUUGACUAACUUCUCAAUACAAUGCUGG-UGG--------AGA---GCAG---CUAACAA----CUGU--GCCAGCG--GCGC-UCGGAAGACG------------------A--UGAG----CUGAACCG--CAAG-------------GAUA---CUUG--CGGCA-AG-----G-CG----------------------------------------------------------------------------------------------------------------------ACGGACUAAUCACCCCUGUGUCAA----------------------GAG-CG-UGCACUUU---------CUC----UCAAUG-UA---AACCAAAUGCAACA-----UAUAGGUCGUGA-GCAG--AAU---AUGG-G-------GCGGU--------------UUAAUC---------------GCCGC-A----C-----CAAUCUGAG---UUAG---GUGGU------------AGC----CCGCAA--------GCG-----CCGCAAAC--------------------------------------------CUUAGAA---------------------------------------------------------------------------------------------------------A-UGCAC-------CAA-GCUC-U------UAGCCGUGAC-----GGGCA----GAAA----------UGUCC--UAUAA-GACCUUAA-UGAUUUGGGUAA-----UCUCGCUUAA----GGCUAGUCCAGACAAGAAAAAUUUGACGAACCUUAGAAUAGGUAAUUAAC-----------------------------------UUUUAUACGGAAC------------------GUAGGUGAGA----UUUGC-GGG-------UA-AAGGUAAU-------CCC-GCCGCAGACCAG---------------------------CCC------------------------------GCAA-----------------------------------GGG---UGGGGCUUC-AAGC-UGU--CGAGUCGCU----CUCG--GCA---------------------------------------------------UCUCCGU--GGAGUCUC--CUGCGUGGCA-GAA-----CGGAG------CAUUGAAUAAGAGG--------GUACUCGGAAGUC-------------UGAG-AGG-A-CGACGAGUGGGAAGG
>URS0000D6A23B_12908/1-558
ACUUGACUAACUUCUCAAUACAAUGCUGG-UGG--------AGA---GCAG---CUAACAA----CUGU--GCCAGCG--GCGC-UCGGAAGACG------------------A--UGAG----CUGAACUG--CAAG-------------GAUA---CUUG--CGGCA-AG-----G-CG----------------------------------------------------------------------------------------------------------------------ACGGACUAAUCACCCCUGUGUCAA----------------------GAG-CG-UGCACUUU---------CUC----UCAAUG-UA---AACCAAAUGCAACA-----UAUAGGUCGUGA-GCAG--AAU---AUGG-G-------GCGGU--------------UUAAUC---------------GCCGC-A----C-----CAAUCUGAG---UUAG---GUGGU------------AGC----CCGCAA--------GCG-----CCGCAAAC--------------------------------------------CUUAGAA---------------------------------------------------------------------------------------------------------A-CGCAC-------UAA-GCUC-U------UAGCCGUGAC-----GGGCA----GAAA----------UGUCC--UAUAA-GACCUUAA-UGAUUUGGGUAA-----UCUCGCUUAA----GGCUAGUCCAGACAAGAAAAUUUGACGAACCUUAGAAUAGGUAAUUAAC------------------------------------UUUUAUACGGAAC------------------GUAGGUGAGA----UUUGC-GGG-------UA-AAGGUAAU-------CCC-GCCGCAGACCAG---------------------------CCC------------------------------GCAA-----------------------------------GGG---UGGGGCUUC-AAGC-UGU--CGAGUCGCU----CUCG--GCA---------------------------------------------------UCUCCGU--GGAGUCUC--CUGCGUGGCA-GAA-----CGGAG------CAUUGAAUAAGAGG--------GUACUCGGAAGUC-------------UGAG-AGG-A-CGACGAGUGGGAAGG
>URS0000D6B2FC_12908/1-559
ACUUGACUAACUUCUCAAUACAAUGCUGG-UGG--------AGA---GCAG---CUAACAA----CUGU--GCCAGCG--GCGC-UCGGAAGACGA--------------------UGAG----C--UGAACCACAAG-------------GAUA---CUUGCGG--CG-AG-----G-CG----------------------------------------------------------------------------------------------------------------------ACGGACUAAUCACCCCUGUGUCAA----------------------GAG-CG-UGCACU-----------CUCUC---UCAAUGUA---AACCAAAUGCAACA-----UAUAGGUCGUGA-GCAG--AAU---AUGG-G-------GCGGU--------------UUAAUC---------------GCCGC-A----C-----UAAUCUGAG---UUAG---GUGGU------------AGC----CCGCAA--------GCG-----CCGCAAAC--------------------------------------------CUUAGAA---------------------------------------------------------------------------------------------------------A-CGCAC-------UAA-GCUC-U------UAGCCGUGAC-----GGGCA----GAAA----------UGUCC--UAUAA-GACCUUAA-UGAUUUGGGUAA-----UCUCGCUUAA----GGCUAGUCCAGACAAGAAAAAUUUGACGAACCUUAGAAUAGGUAAUUAAC-----------------------------------UUUUAUACGGAAC------------------GUAGGUGAGA----UUUGC-GGG-------UA-AAGGUAAU-------CCC-GCCGCAGACUAG---------------------------UCC------------------------------GCAA-----------------------------------GGA---UGGGGCUUC-AAGC-UGU--CGAGUCGCU----CUCG--GCA---------------------------------------------------UCUCCGU--GGGGUCUC--CUGCGUGGCA-GAA-----CGGAG-----CAUUGAAUAGGGGG---------GUACUCGGAAGUC-------------UGAG-AGG-A-CGACGAGUGGGAAGG
>URS0000D6B72B_12908/1-618
UAUAAAACCUAAUAGUAUUUUGAACCAGA-UGA--------AAAA--CUAGGG-GAGACA---CCCUAG--G-CUGGA--AUAC-UUCUCAAGGGAC--------------AGA-----GU---U--CCGUU--AGCA-------------GAGA---UGC---GACAG-GU------GAAGUCCU-UAC----G-AACUGU-G-------------GCAA---------------CA-CAG-C-GUAGUC-GGAGGCGA----------GCA--------------------UCGCC-AAGGGAG---------------------------------------AAG-UA-GGUGCA-----------GA-CUUAUC-----AGU--AUCAAAAACAACACCG---AACUACUCGGGA-CA----AAUC--GGGAGAC------CACA---------------CUGU------------------UGGG-C----G-----UACCUAGGU---AU-----UCUA-------------CGGG---GUGACA-------CCUG---UGAGGACAAU--------------------------------------------GCCUAAA----------------------------------------------------------------------------------------------------------UGUCAA-------GAA-AGUCCUUGAGA-GCGUAAUUGAG----GCUCG----GCAA----------CGAGC-GUAUAA-GAGUAGAA-----GGUGGUCCAAGUA----GCCCAAACU-UACGCUAUGAUUAACAAAUUAACUUUUGUUCUAGUGCGAUAGAAAAAAGAGCAAUUACUGCAUACG------------AGAGUAUGAAAAUGUCUAUU------------------GCGGGU----GAAAGGUGC-GAC-------GA----AGGAU-------GUC-GUAUGGGUUCUG---------------------------GAAC-----------------------------UUCG----------------------------------GUUC---UGGCUAAAC-GUGGAGGUG-CC--GGCG-------GG-UACC----------------------------------------------------AAGGGC--GGUUAGUC--CCCAUUGUGU-GAAUA---UUGGUUGG-------GGUAAGAUCU--------GUAUAAGGAGGA--------------CUUG-CAA-AAUACUUUUCUUAUUAU
>URS0000D67036_12908/1-612
UCUUUGAAAAGGGAAUAUUUAGAACCAGA-UGA--------AAAA--CAGUGUGUCGAC---CACACUG--G-CUGGA--AUAU-AACUCAAGGGAU--------------AGA--AUUC----C--GA-UC--AGCA-------------GAGA---UGC---GA-AC-AGG-UGAA-AU--CCU-UAG-CU-A---GUUA-G-------------GUAA---------------CU-AAC-C-CG-CUC-GGAGCUAC----------UCA--------------------GUGGC-AAGGGAG---------------------------------------UUA-UA-GGUGCA-----------GCUAUAUC------AGU--GUCAAAAAUAAUGCUA---AACUGUUCGGGG-C---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAUCGGGAGACCAACAUGGGCGUACCCACAUAUCCCACUACUGGAGACAGUGGUAAGGGCAAUGAGUGAAGAUCGCU---------------------------------AAA--GCCUUUG----CGUAAUUGAA-----GCAUC----GCAA----------GAUGU-GUAUAA-GAACAGAC-----GGCAGUCCAAGUA----GCCUAAAU--UUACGCUUCUAUUAACAAUUAUGAUUGCGUUUAGUGCGAAAAAAG------------------CAAUUUACUGUACACAAAAGGUGUAAAUGUCUAUC------------------GCAGGU----GAAAGGUGC-AAC-------GA----AAGAU-------GUU-GUCAGGGCAAGUCG-------------------------GAAGC----------------------------CUAUG--------------------------------GCUUU----GGCUAAAC-GUGGAGGUG-CA--GGCA-------UG-CACC----------------------------------------------------AAGGGC--GGUUAGUC--CCCUGUGUGU-GAAUA---UUGGCUGG--------GAUAUGGUGU-------GUAUAAGGAGGA--------------CUUA-CUA-AAUAUUCUUUUUUCAAA
>URS0000D6D35F_12908/1-613
UCUUUGAUAAGAGUAUAUUUUGAACCAGA-UGA--------AAAA--CAGUGUGUCGAC---CACACUG--G-CUGGAA-UAUA-ACCCAAGGGAU---------------AGA---GUUC---C--AA-UU--AGCA-------------GAGA---UGCA--AA-CA-GGU-GAA----AUCCU-UAG-CA-A---UUCA-A-------------GUAA---------------UU-GUC-U-UG-CUC-GUAGGCUC----------GCA--------------------GAGCC-AAGGGG----------------------------------------GUU-AUGGGUGCA-----------GCUAUAUC------AGU--GCCAAAAACAAUAUCA---AACUGUUCGGGA-C---A-AAU---CGGG-A-G----ACCCA---------------ACU-------------------UGGGG----CA-U---ACCCACGCA---AA-----UCA--------------CUGUC--AGAGAU------GAUAG----AGAGAUUAC--------------------------------------------UGUGUGA--------------------------------------------------------------------------------------------------------AUAUCGC--------UAA-AGUCCUUG----CGUAGUUGAA-----GCUUG----GUAA----------CAAGC--UAUAA-GAACAGAC-----GAUAGUCCAAGUA----GCCAAAA---UAAAGUCUACGCUUUAUUAACAAGUGCAAUUAUUUUGUUUAAGGUGAA-------ACAAACAAAUUACAGUUCCUAAAAAAG--GGAAAAUGUCUAUU------------------GCUGGU----GAAAGGUGC-GAC-------GA----GAGAU-------GUC-GUUAGGGUUUA----------------------------GGC------------------------------UUUA-----------------------------------GCU----GGGUAAGA-GUGGAGGUG-CA--GGCA-------UG-UGCC---------------------------------------------------A-AGGGC--UCUUAUUC--CCCUAUGUGU-GAAUA---UUGGUUGG--------GAUAUAGUGU-------GUAUGAGGAGGA--------------CUCA-CAA-AAUAUACUUUUAUCAAA
>URS0000D65A6B_12908/1-603
AUAUACUAGACAAUGUCAGGCGAACCUGC-UGA--------AGA---GCCGA--UGACU-----UCGGU--GGCAGGG--CGUU-CCGGAAAGCCA---------------CGG--UACA----U--CU-UCAGGACA-------------GAUA---AACU--GG-AG-AAU-GUAA-CAAACCG-UUG-CC-C---AAAC-A-------------GAGA---------------UG-GGA-G-GG-CAG-A-AGGAUA----------UACA-------------------UUUCC-AACGGCAAA-------------------------------------GGG-AC-GGCGGGUUCAUA-----AAGAAU--------UGAAAAGCAAAAGGCAAGGGGAACGGGAGCGGCAUC-CGAC--AAC---AGAC-G-------GCGG---------------AAGUU-----------------CCGC-A----G-----UAACCGUGC---GGGCC--C----------------UGG---UUUGAGAC-------CCA--------GAAGCA-------------------------------------------GCACGGC---------------------------------------------------------------------------------------------------------A-UUCA--------GGA-CGGAUGCA----UCAGGUUGAG-----ACCUU----GAAA----------AAGGU-GUAUAA-GCUUUACC-----CCCUGUUU------AACGGGCAAAC--CCUGGAAAUUUUAAAAAGAUGUCAUUUACACUUAU--------------------------------------------------UUAAAAUCUGAAUG-----------------UCGCCCGGA-----GAUGC-AGG-------UAAA-----UC-------CCU-GCACAUGCGUAG---------------------------CAACUCCAAGCAC--------------------UUGU-------------------------GUGCGAGGAGCUGG--UUGUCCAGG-AAGU-AUG--GAGGUAGCU----CCCC--CAU---------------------------------------------------GCUCAGA--CCUGGGCA--CAUGUUGGCU-GAAUA---UUGCG-------------GUUCUUAUAUUGGGCUUAGGGGGAAG---------------CCCC-CGC-CUGAUGUCUUAAAUCUC
>URS0000D693EB_12908/1-604
AUAUACUAGACAAUGUCAGGCGAACCUGC-UGA--------AGA---GCCGA--UGACU-----UCGGU--GGCAGGG--CGUU-CCGGAAAGCCA---------------CGG--UACA----U--CU-UCAGGACA-------------GAUA---AACU--GG-AG-AAU-GUAA-CAAACCG-UUG-CC-C-AA--AC-A-------------GAGA---------------UG-GGA-G-GG-CAG-A-AGGAUA----------UACA-------------------UUUCC-AACGGCAAA-------------------------------------GGG-AC-GGCGGGUUCAUA-----AAGAAU--------UGAAAAGCAAAAGGCAAGGGGAACGGGAGUGGCAUC-CGAC--AAC---AGAC-G-------GCGG---------------AAGUU-----------------CCGC-A----G-----UAACCGUGC---GG-----GCC--------------CUGG--UUUGAGAC------CCAG-----AAGCA-----------------------------------------------GCACGGC---------------------------------------------------------------------------------------------------------A-UUCA--------GGA-CGGAUGCA----UCAGGUUGAG-----ACCUU----GAAA----------AAGGU-GUAAAA-GCUUUACC-----CCCUGUUU-------AACGGGC-AAACCCUGGAAAUUUUUUUAAUAUGUCAUUUACAUUUUAU-------------------------------------------------AAAAAAUCUGAAUG----------------UCGCCCGGA------GAUGC-AGG-------UA-A----AUU-------CCU-GCACAUGCGUAG---------------------------CAACUCCAAGCAC--------------------UUGU-------------------------GUGCGAGGAGCUGG--UUGUCCAGG-AAGU-AUG--GAGGUAGCU----CCCC--CAU---------------------------------------------------GCUCAGA--CCUGGGCA--CAUGUUGGCU-GAAUA---UUGCG-------------GUUCUUAUAUUGGGCUUAGGGGGAAG---------------CCCC-CGC-CUGAUGUCUUAAAUCUC
>URS0000D6C52E_12908/1-604
AUAUACUAGACAAUGUCAGGCGAACCUGC-UGA--------AGA---GCCGA--UGACC-----UCGGU--GGCAGGG--CGUC-CCGGAGCGCCG---------------CGG--UACA----U--CU-UCAGAACA-------------GAUA---AAC-U-GG-AG-AAU-GUAA-CAAACCG-UUG-UC-C---AAAC-A-------------GAGA---------------UG-GGA-G-GA-CAG-A-AGGAUA----------UACA-------------------UUUCC-AACGGCAAA-------------------------------------GGG-AC-GGCGGG-----------UUCA--UAAAGAAUUGAAAAGCAAAAAGCAAGGGGAACGGGAGCGGCAUC-CGAC--AAC---AGAC-G-------GCGG---------------AGGUU-----------------CCGC-A----G-----UAACCGUGC---G--G---GCC--------------CUGG--UUUGAGAC------CCAG-----AAGCA-----------------------------------------------GCACGGC---------------------------------------------------------------------------------------------------------A-UUCA--------GGA-CGGAUGCA----UCAGGUUGAG-----ACCUU----GAAA----------AAGGU-GUAUAA-GCUUUACC-----CCCUGUUU-------AACGGGCAAAC-CCUGGAAAUUUUUUUAAUAUGUCAUUUACAUUUUAU-------------------------------------------------AAAAAAUCUGAAU----------------GUCGCCCGGA------GAUGC-AGG-------UA-A----AUU-------CCU-GCACAUGCGUA----------------------------GCAA-CUCCAAGCAU------------------UUGU-----------------------GUGCAAGGAGCAGGU----UGUCCAGG-AAGU-AUG--GAGGUAGCU----CCUC--CAU---------------------------------------------------GCUCAGA--CCUGGGCA--CAUGUUGGCU-GAAUA---UUGCG-----GUUCUUAUAUUGGAC--------UUAGGGGGAAG---------------CCCC-CGC-UUGAUGUCUUUUAAAAU
>URS0000D6C582_12908/1-605
AUACACUAGACAAUGUCAGGCGAACCUGC-UGA--------AGA---GCCGA--UGACC-----UCGGU--GGCAGGG--CGUC-CCGGAACGCCG---------------CGG--UACA----U--CU-UC--AGGA-----------CAGAUA---AACU--GG-AG-AAU-GUAA-CAAACCG-UUG-CC-C---AAAC-A-------------GAGA---------------UG-GGA-G-GG-CAG-A-AGGAUA----------UACA-------------------UUUCC-AACAGCAAA-------------------------------------GGG-AC-GGCGGG-----------UUCA--UAAAGAAUUGAAAAGCAAAAGGCAAGGGGAACGGGAGCGGCAUC-CGAC--AAC---AGAC-G-------GCGG---------------AGGUU-----------------CCGC-A----G-----UAACCGUGC---GG-----GCC--------------CUGG--UUUGAGAC------CCAG-----AAGCA-----------------------------------------------GCACGGC---------------------------------------------------------------------------------------------------------A-UUCA--------GGA-CGGAUGCA----UCAGGUUGAG-----ACCUU----GAAA----------AAGGU-GUAUAA-GCUUUACC-----CCCUGUUU-------AACGGGCAAA-CCCUGGAAAUUUUAAAAAGAUGUCAUUUAAACACUUAU------------------------------------------------UUAAAAUCUGAAUG----------------UCGCCCGGA------GAUGC-AGG-------UA-A----AUC-------CCU-GCACAUGCGUAG---------------------------CAACUCCAAGCAC--------------------UUGU-------------------------GUGCGAGGAGCUGG--UUGUCCAGG-AAGU-AUG--GAGGUAGCU----CCCC--CAU---------------------------------------------------GCUCAGA--CCUGGGCA--CAUGUUGGCU-GAACA---UUGCG-----GUUCUUAUAUUGGAC--------UUAGGGGGAAG---------------CCCC-CGC-UUGAUGUCUUUUAAAAU
>URS0000D67E3B_12908/1-603
AUAUACUAGACAAUGUCAGGCGAACCUGC-UGA--------AGA---GCCGA--UGACU-----UCGGU--GGCAGGG--CGUU-CCGGAAAGCCA---------------CGG--UACA----U--CU-UCAGGACA-------------GAUA---AACU--GG-AG-AAU-GUAA-CAAACCG-UUG-CC-C---AAAC-A-------------GAGA---------------UG-GGA-G-GG-CAG-A-AGGAUA----------UACA-------------------UUUUC-AACGGCAAA-------------------------------------GGG-AC-GGCGGG-----------UUCA--UAAAGAAUUGAAAAGCAAAAGGCAAGGGGAACGGGAGCGGCAUC-CGAC--AAC---AGAC-G-------GCGG---------------AAGUU-----------------CCGC-A----G-----UAACCGUGC---GG-----GCC--------------CUGG--UUUGAGAC------CCAG-----AAGCA-----------------------------------------------GCACGGC---------------------------------------------------------------------------------------------------------A-UUCA--------GGA-CGGAUGCA----UCAGGUUGAG-----ACCUU----GAAA----------AAGGU-GUAUAAGCU-UUACC-----CCCUGUUU-------AACGGGCAAAC-CCUGGAAAUUUUAAAAAGAUGUCAUUUACACUUAU--------------------------------------------------UUAAAAUCUGAAU----------------GUCGCCCGGA------GAUGC-AGG-------UAAA-----UC-------CCU-GCACAUGCGUAG---------------------------CAACUCCAAGCAC--------------------UUGU-------------------------GUGCGAAGAGCUGG--UUGUCCAGG-AAGU-AUG--GAGGUAGCU----CCUC--CAU---------------------------------------------------GCUCAGA--CCUGGGCA--CAUGUUGGCU-GAAUA---UUGCG-----GUUCUUAUAUUGGAC--------UUAGGGGGAAG---------------CCCC-CGC-UUGAUGUCUAUUAAUUC
>URS0000D68AC4_12908/1-605
AUAUACUAGACAAUGUCAGGCGAACCUGC-UGA--------AGA---GCCGA--UGACU-----UCGGU--GGCAGGG--CGUC-CCGGAACGCCA---------------CGG--UACA----U--CU-UC--AGGA-----------CAGAUA---AACU--GG-AG-AAU-GUAA-CAAACCG-UUG-CC-C---AAAC-A-------------GAGA---------------CG-GGA-G-GG-CAG-A-AGGAUA----------UACA-------------------UUUCC-AACGGCAAA-------------------------------------GGG-GC-GGCGGG-----------UUCA--UAAAGAAUUGAAAAGCAAAAGGCAAGGGGAACGGGAGCGGCAUC-CGAC--AAC---AGAC-G-------UCGG---------------AGGUU-----------------CCGA-A----G-----UAACCGUGC---GG-----GCC--------------CUGG--UUUGAGAC------CCAG-----AAGCA-----------------------------------------------GCACGGC---------------------------------------------------------------------------------------------------------A-UUCA--------GGA-CGGAUGCA----UCAGGUUGAA-----GCCUU----GAAA----------AAGGU-GUAUAA-GCUUUACC-----CCCUGUUC-------AACGGGCAAA-CCCUGGAAAUUUUUUUGAUAUGUCAUUUACAUUUUAUA------------------------------------------------AAAAAAUCUGAAUG----------------UCGCCCGGA------GAUGC-AGG-------UA-A----AUU-------CCU-GCACAUGCGUAGCA---------------------------ACUCCAAGCGC--------------------CUUU-------------------------GCGCAAGGAGCAGG--UUGUCCAGG-AAGU-AUG--AAGGUAGCU----CCUC--CAU---------------------------------------------------GCUCAGA--CCUGGGCA--CAUGUUGGCU-GAAUA---UUGCG-----GUUCUUAUAUUGGAC--------UUAGGAAGAAG---------------UUCC-CGC-CUGAUGUCUUAAAUCUC
>URS0000D6BC32_12908/1-605
AUAUACUAGACAAUGUCAGGCGAACCUGC-UGA--------AGA---GCCGA--UGACC-----UCGGU--GGCAGGG--CGUC-CCGGAACGCCA---------------CGG--UACA----U--CU-UCAGGACA-------------GAUA---AACU--GG-AG-AAU-GUAA-CAAACCG-UUG-CC-C---AAAC-A-------------GAGA---------------UG-GGA-G-GG-CAG-A-AGGAUA----------UACA-------------------UUUCC-AACGGCAAA-------------------------------------GGG-GC-GGCGGG-----------UUCA--UAAAGAAUUGAAAAGCAAAAGGCAAGGGGAACGGGAGCGGCAUC-CGAC--AAC---AGAC-G-------UCGG---------------AGGUU-----------------CCGA-A----G-----UAACCGUGC---GG-----GCC--------------CUGG--UUUGAGAC------CCAG-----AAGCA-----------------------------------------------GCACGGC---------------------------------------------------------------------------------------------------------A-UUCA--------GGA-CGGAUGCA----UCAGGUUGAA-----GCCUU----GAAA----------AAGGU-GUAUAAGCU-UUACC-----CCCUGUUC-------AACGGGCAAAC-CCUGGAAAUUUUUUUGAUAUGUCAUUUACAUUUUAUA------------------------------------------------AAAAAAUCUGAAU----------------GUCGCCCGGA------GAUGC-AGG-------UA-A----AUU-------CCU-GCACAUGCGUAG---------------------------CAACUCCAAGCGC--------------------UUUU-------------------------GCGCAAGGAGCAGG--UUGUCCAGG-AAGU-AUG--AAGGUAGCU----CCUC--CAU---------------------------------------------------GCUCAGA--CCUGGGCA--CAUGUUGGCU-GAAUA---UUGCG-----GUUCUUAUAUUGGAC--------UUAGGGGGAAG---------------CCCC-CGC-UUGAUGUCUUAAUCCUU
>URS0000D6A431_12908/1-623
GCCAGCUGGGAGCCGUGCCGGGACCUCGG-UGA--------ACAA--AGAGA--ACACCA----UCCCU---CCGAGGA-CCGG-ACGCAUUCCG----------------UGG--UCUG----U--C--CG--UGCG-------------GAUA---CGCA--CG--G-GU-----A-CG--CCA-UCU-GC-G--ACAUG-C-------------GCGA---------------GC-AUGCC-GC-GGG-A-AGGACGG---------AGCAGGAACCGC----------CCGUCC-AACGGACG--------------------------------------GUC-CGGGUCGCC-----------CGG-GCACGGA---GA---AGGACAACGCACGGUG---AUGCCGUGCCCA-CCGC--AAU---ACGA-A-GGG---GUGCU--------------GAACA----------------GGCUC-C-CCCG-----AAACCC-GC---AAAC---CAG--------------GCCGC--AUGAGAAC----GCGGU-----GCUGUAAG--------------------------------------------GC-GGGA---------------------------------------------------------------------------------------------------------ACCUCACC------CAC-GGUGGG---CGGCGCACACGGC-----GCCCCG---GAAA---------CGGGAC-GUAUAA--ACGGCAA-----GCCGGUCCAAGUA----GCCAAAGC--GUGCGUACUUCAAACAUUUGAUAAGUGGUCCAUGUGAGAACAACAGGGAAACU--------------------------------UUCUUAGCUGAAUG-----------------GCUGGU----GAACGAUGC-GGG-------UAUGAAAAAUC-------CCC-GUCAGAGCAAG----------------------------GCAUCC---------------------------UCCG--------------------------------GGGUGC----GGCUCCCA-UAGU-C--GAGGGCGA-CG----GCCCG-AAG---------------------------------------------------GCUCAGG--UCGGAGUC--CUCUGUGGCG-GAAC----GUCCGCG------UCCAUGCACCGG--------GUAGGGCGAAG---------------GUCC-CCC-GGCACGGCUCCCAGCUG
>URS0000D6A833_12908/1-582
GUCCAUCAGUUUCCGUUUGUGCAUCUCGG-UUG--------AAG---CAAG---GUGAUA-----CUUG--UCCGAGA--GCCU-UCUAAGGGCGACCGAAAGUCCUAA--AGU--AGCUA---A-CAAGAGUUGAGG-----------U-GAUA--GCCUC--UU----UG----AG-AU--GUUACCU-GU-----GAGU-U-------------GUGA---------------AA-CGU-U-GC-AGG---ACUAGU----------AAAA-------------------GCUAG-UGUGAAGAU-------------------------------------GGA-GG-UGUGCC-----------GCAAUAACAU----A----AUCAUAGAGCAUAAGU-----CUUUUCGUUG-GAUAG-AAGU--AAGC-A-----CAUGCC---------------GACAG-----------------GGUG-A----U-GACUUUA-CCAGA---UAAG---GGCA-------------AGC----GUGAUAG-------CCU-----UGCCAAAC--------------------------------------------UCUGG-A--------C------------------------U-----------------------------------------------------------------------AAAUCAAA------CAA-UCCAAU------UUGCCGUGAA-----CAGAA----GAAA----------UUCUG-GUAUAA-GAAAAGCG-----CUUAGUAUGAGUA----GCACAA----GGCAAACAAACAGAUAAUUAUAUGAAAGCAUAUCAU-------------------------------------------------AACAAAUCUGUAU-------------------CGUGU----GAAAGUUGGUGGG-------UU----UCGUU-------CCCAGCCCUAACAUUAAAAG-------------------------------------------------------------------------------------------------------CAAUAGG-AG-C-UUAA-GGAGUUGCU----A-CU-UUAA---------------------------------------------------G--UAGAG-CCUAUUGGG-UUAG-UCGCU-UAAUA---AUGAGA--------GUGUUAUUGUG--------GUUGG----AGAAAA------------ACC-GCA-CAAUUAAGGGUUAUUCG
>URS0000D65ACD_12908/1-635
GAGUUCCUCCAAGCCAUUCUGCAACUCAG-UGC--------CAAA--GCGG---GAUGAAAA---CCGU--UCUGAGA--GGCG-UCGGCUUUCGGCAGUGGAAGCUGC--CGG--AACG----U--CC-GCAUUGGGGAAAAGCGCCGGGGAUA---CCCU--GC-GU-CA-----G-UG--CC--CUG-UG-A-AACCGG-U-------------GCGA---------------AC-CGG-C-GA-CGG-A-AUGUUG----------AGA---------------------GACA-GAAAAUGC--------------------------------------AGU-GC-UGUGCC-----------GG-AGGAAC-----GC---GAACCAAGGCGCAG-----UUUCUGCCGCCG-GCA---AAC---AGAC-GC------CCUCC--------------CGGAA----------------GGAGGGA----A-----UAACCCGG----AAUG---CC-G-------------CAGG---GUGGUG-------CCUG-----CAGGA-------------GAGCGAUCGGGAUCAUGAGCGCCCGAUC-CUUUA--CGGGA---------------------------------------------------------------------------------------------------------AGACCCU--------GC-GCCGGU------UUCCAGUGAA-----GCCCC----GAAA----------GGGGU-GUAUAA-GACGGAAC-----ACUGGCCCAUGUA----GCGGAA----UGGAGAAAGUCUCAUCUUCCAGCUUGCGACAUCUGAUCAACCAUCG---------------------------------------CUUAUUGCCGGAAG-----------------AUCCGU----GAAUGGCAG-AGG-------UA-A--CCAGU-------CCU-CUUUGGGAACA----------------------------GCGGU----------------------------GAAA---------------------------------ACCGC----AGGAUACG-CG---GACG-GGAGUCGCU----G-CC-CGUC---------------------------------------------------AACCGGC--CGUAUUCU--CCCAGUGGCU-GAACA---GGUUCGAA-------GUUCCGGUCG--------GUACCGUGAAA---------------GCGG-GCA-GGAUGGUUUGGAGGAAC
>URS0000D6696F_12908/1-547
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>URS0000D6B4A7_12908/1-531
GAAAAUUAAAUAAAGUGUUUGCACCUCGG-UGA--------AGU---CACC---CUGCU------GGUG--GCCGAGG--CUCA-ACCAUAA-------------------GA---AUUA----U--UA-AU--GUGG-------------GAUA---CUGU--AU-UA-AU-----A-AUAA-GA-----------------------------------------------------------------------------------------------------------------CCACCGUGUAUUCGCCUUUAAUUAGACGCUAUG-------------GUU-GGUGUCGCA-----------AGCA--GUUCU---UC---GAUGUAAGCAAUUAG-----UGUGUGGGGGC-G-AC--AAG---AAGC-UC------UAUA---------------GAAA------------------UAUA------U-----CUCGCG------AUAA---GAUAUAA----------AGC----CUGAGAA-------ACU---UAUAUCUC-------------------------------------------------CGC-----------------------------------------------------------------------------------------------------------UCUCA-----AAGGAA---GCCU------UUGACUUGAU-----GUUAA----GCAA----------UUAAC--UAUAA-CCACAUU------CUAAGUGCGAGUA----GCGAAAU---GUCAACGUUCAGUUUAUGGAGUAUAAA----------------------------------------------------------AAGAUCGCUGAAG------------------CUUCGU----GAAAGUUGA-AAGA------UAAU--CGAGU------UCUU-UC-CACCGUUUC---------------------------GUUA-----------------------------CAUUG---------------------------------UAAC----CAUUCUAG-AAGC-AUA--GAGGUAGCU----CCUA--UAU---------------------------------------------------GCUCAGC--CUAGCGUG--AGUG-UGUGC-GAAUA---ACAAAUU------AGAAUAAUGCUU--------GUAGGGCGAAG---------------GCCC-GCG-AACACUUUGUUUAAAAU
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>URS0000D6A7A9_12908/1-587
CUUUGAGAAAGGAUUUAUGUUGACCGCUG-UGA--------AGA---GGGA---UUACA------UCUC-UGCAGCGA--AGUU-AGCCAUAAUAAU---------------GC--GAUA----A--AG-CC--AUGG-------------GAUA---CUGU--GG-CC-CA-----A-GC--UA-AGAC-UU-----AUAU-U-------------GAAA---------------AA-UAU---GA-GUU-U-CCCUGA----------UACCA------------------UCAGG-----CUAGG-------------------------------------CUA-AC-UGUGCAACA--------UGCUAU--------GGUA-CACAAAAACAACUU-----AGCUGGUUCGUC-CGAC--AAG---AAGC-UC-----UAAUC---------------GUAA------------------GAUU-A----U-----CUCACCAG----UG-----GUAU-------------UAAG--CCUGAGAAA-----CUUG-----AUGC-------------------------------------------------CCGGUA---------------------------------------------------------------------------------------------------------A-CUCAC-----AGGAA--GGAU-U-----GUGUCUUGAA-----GCUAC----GGAA----------GUAGU-GUAUAAGAACCAGGA----AUAAGGUAUGAGUA----GCCGUGU---GACACACAAGCACAAAAGGUUAUAACGUUCGACUCGUUACUCGAAAAAGU-----------------------------------UAAUUUGCUGACG------------------UUCGGU----GAAAGUUGAAGAG-------CA-C--UAAAU-------CUCUUC-UGUUGUUCGUU-------------------------GGG------------------------------GUUCG----------------------------------CCCCUUCAAUUUGAG-AAGC-CUC--UGGGUCGCU----CCCU--CUG---------------------------------------------------GUUCAGC--CUCAAGUU--AAUA-UGUGU-GAAUA---UUGUGGA-----------AUAGUAAAUGUU---GUAAGAUGAAUAAAA-----------GUCU-CAU--AUAGAUCAUUUCUCAA
>URS0000D6671A_12908/1-587
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>URS0000D6A1A6_12908/1-601
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>URS0000D6D257_12908/1-657
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>URS0000D6C4E2_12908/1-640
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>URS0000D6C345_12908/1-640
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>URS0000D661A7_12908/1-637
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>URS0000D68E54_12908/1-637
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>URS0000D6802E_12908/1-633
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>URS0000D6BEA8_12908/1-572
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>URS0000D6BDBD_12908/1-572
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>URS0000D6B21E_12908/1-570
--UUUUGACAAAUAUAUCGUAUAACUCGG-UGC--------ACUAAAGGGU---UGUC-------ACCCCCUCCGAGA--AUAC-CGGAAGCUGU----------------GAC--CAGG----C--UG-CC-UGCGG-------------GAUA---CUGC--GA-CA-GU-----G-AG--GUU-UCU-AU-C---GCUC-C-------------GUGA---------------GG-ACU-G-AU-GGA-GAA-GCUC----------AAA--------------------AGGCA-ACACAGAA--------------------------------------CGG-UA-UGUGCG-----------GAUCU-UGGU----GU---CGAUUAAAGCUCGAA----GGAUUCUGGCAG-CGAC--AAU---AGAC-GC------UAGCU--------------CGAAA----------------GGCUAGA----A-----AAAUCCGU----GAAACC-UGCA-------------GCA-----GGGAUGC------UGC-----AGCGAACUUA-------------------------------------------GCGGAA---------------------------------------------------------------------------------------------------------ACUCCGAA------CCA-AGCUGU------UGGUAGUGAA-----GCGGA----GAAA----------UCCGU-GUAUAA-CAGAAUUC-----UGAGGAAAAAGUA----GCUCAA----UACCAAAAGUUAUACUGGUCUUGAAAACCAGAGAUAGAAAA--------------------------------------------CAUUUUUCUGAAAG-----------------AUGGGU----AAAAUUUGU-GGG-------UA-A--CCAUU-------CCC-GCGGCAGGCAAA---------------------------------------------------------------------------------------------------------AGGGGCAGG-AAGC-U--C-AGGGUCGCU----CCCG--AAG---------------------------------------------------GCUCAGA--CCUGUCUU--CUGUGUUGCU-GAAGA---AAUCGGAA------ACCGUAGAUUGC-------GUAAGGCGAAG---------------GUCU-AUA-UGAUAUAUUUGUCAAAG
>URS0000D66E4C_12908/1-567
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>URS0000D67C5D_12908/1-567
UGUUUUGACAAAUAUAUCGUAUAACUCGG-UGC--------ACUAAAGGGU---UAUCA------ACCC-AUCCGAGA--AUAC-CGGAAGCUGU----------------GAC--CAGG----C--UG-CC-UGCGG-------------GAUA---CUGC--GG-CA-GU-----G-AG--GUU-UCU-GU-U---GCUC-C-------------GCGA---------------GG-ACU-G-AU-GGA-GAA-GCC-----------CAAAA-------------------GGCA-ACACAGAA--------------------------------------CGG-UA-UGUGCG-----------GAUCU-UGGU----GC---CGAUUAAAGCACAAA----GGAUUCUGGCAG-CGAC--AAU---AGAC-GC------UAGCU--------------CGAAA----------------GGCUAGA----A-----AAAUCCGU----GAAAC--CUGC-------------AGC----AGGGAU--------GCU-----GCAGCGAACUUA-----------------------------------------GCGGAA---------------------------------------------------------------------------------------------------------ACUCCGAA----G-CAA--GCUGU------UGGUAGUGAA-----GCGGA----GAAA----------UCCGU-GUAUAA-CAGAAUUC-----UGAGGUAAAAGUA----GCUCAA----UACCAGAGUGUUGCUAGUUCUCGAAACUAGCUGGCU-------------------------------------------------CAAUUAUCUGAAAG-----------------AUGGGU----GAAAUUUGU-GGG-------UA-G--CCAUU-------CCC-GCGGCAGGCAAA---------------------------------------------------------------------------------------------------------AGGGGCAGG-AAGC-U--C-AGGGUCGCU----CCCG--AAG---------------------------------------------------GCUCAGA--CCUGUCUU--CUGCGUGGCU-GAAGA---AAUCGGAA------ACCGUAGAUCAC-------GUAAGGCGAAG---------------GUCU-AUA-UGAUAUAUUUGUCAAAG
>URS0000D679FA_12908/1-604
GCCGUAAUUAAAAAUAACAGAUACCCUAG-UGA--------AGA---AGGG---CUGUCA-----CCCU--GCUAGGA--CAUU-CUUAGAGU------------------AGU--CUGU----A--UU-AA--GAAG-------------GAUA---CCUU--UU-AA-UA-----U-AGG-ACU-UAA-GU-G-A--CAU-UAUAAUUGAUAAGUCCACU-ACUUAUUAAGAA-GA-UGG-A-GC-UUG-A-AGGUUAC---------GGAAA-----------------GU-ACC-AAUAGUUA--------------------------------------GGA-AU-GGUGUAU----------CUAUACAGUU----U----AAUAUAAUGCCGCA-----ACAGUGUGGGGA-GAGC--AAU---AGAC-G--------CUU---------------GAGAA-----------------GAG--A----A-----GAACCUUAA---GU-----CUUA-------------GUCC--UGUGGUG-------GGAU-----UGAGCAGC--------------------------------------------UUAAGGA---------------------------------------------------------------------------------------------------------AUACCAAC------CAA-UCUCCU------UCGCUAUGAU-----GUUGUA---GAAA---------UACAAC--UAUAA-CACACAAC------AGCGGACAAGUA----GCCCAUA---GGCGUUGAAGAGAAAAUAACUUUUGUUUGCGGACAAAAAAAAUGAUA--------------------------------------GGUUAUUCUGAAUG-----------------AUGGGU----GAAAGUUAC-AGG-------UA-G--AAAGU-------CCU-GUCAUAGCAUUGG--------------------------GGA------------------------------GAAA-----------------------------------UCC---UGUGGUAAG-AAGU-UUA--GAGGUCGCU----CCUU--UAA---------------------------------------------------GCUCAGA--CUUAUCAU--CUAUGUAGCA-UAAUA---AUAGCG--------GACUGUAUAGG--------AUAAGGCGAAA---------------GCCU-AUC-UGUUUUUAUAAUUAUAU
>URS0000D6BF6C_12908/1-587
GCCGUAAUUAAAAAUAACAGAUACCCUAG-UGA--------AGA---AGGG---CUGUCA-----CCCU--GCUAGGA--CAUU-CUUAGAGC------------------AGU--CUGU----A--UU-AA--GAAG-------------GAUA---CCUU--UU-AA-UA-----U-AGG-GCU-----UA-A----------------------GUGAC---------------A-----U-UA-----U-AAUUAG----------UAAGUU-----------------UUACU-UAUUAAAAAGAUGAAGCUUAAAGGUUACGGAAAGUACCAAUAGUUAGGA-AU-GGUGUAU----------CUAUACAGUUU--------AAUAUAAUGCCGCAA-----CAGUGUGGGGA-GAGU--AAU---AGAC-G--------CUU---------------GAGAA-----------------GAG--A----A-----GAACCUUAA---GU-----CUUA-------------GUCC--UGUGGUG-------GGAU-----UGAGCAGC--------------------------------------------UUAAGGA---------------------------------------------------------------------------------------------------------AUACCAAC------CAA-UCUCCU------UUGCUAUGAU-----GUUGUA---GAAA---------UACAAC--UAUAA-CACACAGC------AGCGGACAAGUA----GCCCAUA---GGCGUGAAAUGAUGAAACAGUAUGUUUAAAAUUGUU-------------------------------------------------UAAAAUUCUGAAUG-----------------AUGGGU----GAAAGUUGC-AGG-------UA-G--AAAGU-------CCU-GUCAUAGCAUUGG--------------------------GGA------------------------------GAAA-----------------------------------UCC---UGUGGUAAG-AAGU-UUA--GAGGUCGCU----CCUU--UAA---------------------------------------------------GCUCAGA--CUUAUCAU--CUAUGUAGCA-UAAUA---AUAGC--------GAACUGUAUAGG--------AUAAGAUGAAG---------------GUCU-AUC-UGUUUUAUUUUAU----
>URS0000D6CFB2_12908/1-623
UAAUUCUUUGAAAAAUAUAGAUACCCUAG-UGC--------AGA---GAGUU--GUC-------AGCUU--GCUAGGA--UGCC-UUUAAGUA------------------AGU--CUAU----U--AU-AA--UAAG-------------GAUG---CUUA--AU-AU-GG-----U-AGG-ACU-UUU-UA-U---UAGU-A-------------GUAA---------------UA-UUA-A-UA-AAG-A-AGAUAC----------AAGA-------------------GUAUC-AACAAAGA--------------------------------------GAG-GU-AGUGUA-----------UCUUAGUAAUC---A----ACAGUAAAGUCAUA-----ACAGAGUGGGGA-GAAU--AAU---AGAC-G-------GUGU---------------GAGAA-----------------GCAC-A----A-----GAACCCUAA---AGC----CUAA-------------UAU---UGUGGUG--------AUA-----UUGGAAAC--------------------------------------------UUGGGGA---------------------------------------------------------------------------------------------------------AUACCAAA------CAA-UCUCCU------AUGCCUUGAU-----GUAUUA---GAAA---------UAGUAC--UAUAA-CACUCAAA------AAUGGAUAAGUA----GCUCAAU---GGCAGUUUCUUAAUAAAAUAAAGCUCAAAAAUUAUUCAUUAAGAAUAAAAAGAUAAUUCUAAUUUAAUUUUUGAUUUAAAACAUAUUUUUUUCUGAAUG-----------------AUGAGU----GAACAUUAC-AGG-------UA-G--UAAAU-------CCU-GUCAUAGGUUUG---------------------------GUUUUUG--------------------------CAAAUA-----------------------------CAAAAAC---UAUGGUAAG-AAGC-UUA--AGAGUCGCU----AUCU--UAA---------------------------------------------------GUUCAGA--CUUAUCAU--CUAUGUAACU-UAAUA---ACUACA-------GAUUACUAAGA---------AUAAGGCGAAG---------------GUCU-AUC-UGAUAUUUUUCAAAGAU
>URS0000D6CE71_12908/1-580
UCAAAAGUGAAGAUACUGUAAUAUCCCAG-UGA--------AGAU--GGUU---UGCUC------AACC-UGCUGGGG--UAUC-UGGAAUGAAGCU--------------CGG--GGCU----A--AG-AG--GAAG-------------GAUA---CUUU--CU-UA-CG-----G-CUGGCCG-CAU-CG-A----AGU-A-------------GCAA---------------UA-C---U-AG-UUG-A-AGGGUG----------CAA--------------------UUCCU-GAAAGUAA--------------------------------------CAG-AU-GGCACA-----------CAUCAUUGU-----GC---AAUAUAGUCCAGAAU-----ACAUAUCGGUG-GAAG--AAU---AGAG-G-GUU---GCUU---------------GAAUA-----------------AAGC---ACCU-----GAAUCUUAG---UUAG---GUAU-------------AUA----UUGGCGU-------UAU-----AUACAAAC--------------------------------------------CUAAGAA---------------------------------------------------------------------------------------------------------UAGCCAA-------UAA-UCCACU------CUGUCGUGAA-----GCGAA----GAAA----------UUCGU-GUAUAA-GAUAUGGAAGAAGAUUC-UCUUAGUA----GCCUAGA---GACAGGUUCUAUAAUGACAAGAAGAUCGUCAGG----------------------------------------------------AAAACUGCUGAAGAG----------------UUGGGU----GAAAAGUGU-GGG-------UA-A--UCAAU-------CCC-ACCAGAGCUUCGU--------------------------GAU------------------------------GAAA-----------------------------------GUCU--AGGGAAGAG-AUGC-AAG--GAA-UUGCU----A-AC--CUU---------------------------------------------------GCACAGC--CUCUUUUCU-CUCUGUAGGA-UAACA---AUAUUUUU-------GCAAUGAUGAU-------GUAGGGUGAAUAAAA-----------GCCC-AUU-ACAGUGUUUUCACUUUU
>URS0000D69DFE_12908/1-579
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>URS0000D6824D_12908/1-579
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>URS0000D6A2CD_12908/1-579
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>URS0000D6B0AB_12908/1-579
UCAAAAGUGAAGAUACUGUAAUAUCCCAG-UGA--------AGAU--GGUU---UGCUC------AACC-UGCUGGGG--UAUC-UGGAAUGAAGCU--------------CGG--GGCU----A--AG-AG--AAAG-------------GAUA---CUUU--CU-UA-CG-----G-CUGGCCG-CAU-CGAA-----GU-A-------------GUAA---------------UA-C---U-AG-AUG-A-AGGGUG----------CAA--------------------UUCCU-GAAAGUAA--------------------------------------CAG-AU-GGCACA-----------CAUCAUUGU-----GC---AAUAUAGUCCAGAAU-----ACAUAUCGGUG-GAAC--AAU---AGAG---GGU-U-GCUU---------------GAAUA-----------------AAGC---ACCU-----GAAUCUUAG---UUAG---GUAU-------------AUA----UUGGCAU-------UAU-----AUACAAAC--------------------------------------------CUAAGAA---------------------------------------------------------------------------------------------------------UAGCCAA-------UAA-UCCACU------CUGUCGUGAA-----GUGAA----GAAA----------UUCAU-GUAUAA-GAUAUGGAAGAAGAUUC-UCUUAGUA----GCCUAGA---GACAGUUCUAUAAUGACAAGAAGAUCGUCAGG-----------------------------------------------------AAAACUGCUGAAGAG----------------UUGGGU----GAAAAGUGU-GGG-------UA-A--UCAAU-------CCC-ACCAGAGCUUCG---------------------------UGAU-----------------------------GAAA----------------------------------AUCU---AGGGAAGAG-AUGC-GAG--GAAUU-GCU----A-AC--CUU---------------------------------------------------GCACAGC--CUCUUUUCU-CUCUGUAGGA-UAACA---AUAUUUUU-------GCAAUGAUGAU-------GUAGGGUGAAUAAAA-----------GCCC-AUU-ACAGUGUUUUCACUUUU
>URS0000D6B83C_12908/1-583
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>URS0000D6CDC3_12908/1-593
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>URS0000D66547_12908/1-623
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>URS0000D6A81D_12908/1-547
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>URS0000D6AB12_12908/1-566
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>URS0000D6A7F3_12908/1-619
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>URS0000D68A40_12908/1-588
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>URS0000D6BEEB_12908/1-592
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>URS0000D695F5_12908/1-592
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>URS0000D6CE44_12908/1-594
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>URS0000D672E0_12908/1-627
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>URS0000D6BCEF_12908/1-521
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>URS0000D6B379_12908/1-566
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>URS0000D6659D_12908/1-575
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>URS0000D67194_12908/1-578
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>URS0000D666A2_12908/1-578
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>URS0000D69F3F_12908/1-578
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>URS0000D6A64E_12908/1-579
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>URS0000D6B730_12908/1-606
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>URS0000D68DC3_12908/1-577
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>URS0000D6A939_12908/1-577
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>URS0000D6981D_12908/1-577
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>URS0000D6B35A_12908/1-577
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>URS0000D6981F_12908/1-585
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>URS0000D6B18F_12908/1-596
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>URS0000D673F7_12908/1-585
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>URS0000D66E67_12908/1-594
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>URS0000D6B3B2_12908/1-562
----GCCAGCUUAAACAUGAUUACCUCGG-UGU--------AGA---GAGGUU-UUUC-----AGCCUU--GCCGAGA--UGUG-CAGUAACG------------------AGA--UAGA----U--AA-AU--UCGG-------------GAUA---CUGG--AU-UU-AU-----U-GA-UUCU-UUC-CU-C---AGAG-A-------------GUGA---------------UC--CU-G-CG-GAG-A-AGAUGG----------AAA--------------------CCGUC-AACAAUGC--------------------------------------UGU-GC-AGUGUA-----------UCAUCAUAGA----GAA--AAUCAAAAGCAGAAU-----CCUUGUGGUCG-GCGUAGAAA---AGAC-G-------CUUA---------------CGGUG-----------------UAAG-A----A-----UAAUCCAUU---GAUG---UCGGC------------AGU---GUGAGAG--------ACU-----ACGGACUA--------------------------------------------AAUGGAA----------------------------------------------------------------------------------------------------------CUCUAAA----A-GAA-GUCGAU------UUGCCUUGAA-----CCUGA----GAAA----------UCGGG-GUAUAA-CACAAGAA-----AUUCGUUAAAGUA----GCGGUAU---GGCAGCAAACAAAAAGUUUCCUCAAUAGAGUAUUGAGUUUUU-------------------------------------------AAAACAUCUGAAAG-----------------AACCGU----GAAAUUUGC-AGG-------UG-A----AAU-------CCU-GCAUGUGCUUUGACC-------------------------------------------------------------------------------------------------------GCGGCAAG-AAGC-A-U--AGGGUCGCU----CCCG--AAA---------------------------------------------------GCUCAGA--CUUGUCGU--CACAUUGGUU-GAAUA---UGAUUGCA------UCGUCGAUGA---------AUAAGGGGAAG---------------CCCU-AAU-CAUGUUUAUUUUGGAGU
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ACGGCAAUUUUCAAAUAUGAUUACCUCGG-UGA--------AGA---GUGAUU-UUUC-----AGUCAU--GCCGAGA--UGCA-AUGGUGACG-----------------AGA--UAGG----C--UU-GU--UCGA-------------GAUA---UUGG--AU-AA-GC-----U-GA-UUCU-UUC-CA-C---UGGG-A-------------GUGA---------------UU-UUG-G-UG-GUG-G-AGAUGG----------AAA--------------------CCAUC-AACAAUGC--------------------------------------CUU-GC-GGUGUA-----------UCAUCAUAGA----GA---AGUUAAAUGCAGAAU-----CCUUGUGGUCA-GUGAUUAAU---AGAC-G-------UCUG---------------CGGUG-----------------CAGA-A----A-----UAAUCCAGU---GAU----GUGA-------------GUGGU--GUGAGAG-----ACUAC-----GGACUA----------------------------------------------ACUGGAA--------------------------------------------------------------------------------------------------------AUUCUCAA-------UAA-GCUGAU------UUGCCUUGAA-----UCUGA----GAAA----------UCGGA-GUAUAA-CACAAGAA-----AUUCGUUAAAGUA----GCGGUAU---GGCAAGUUCUUAAUUCAAACAAAAUGUUUUAAAGGCGAUAAGAAAAACAUU----------------------------------AAAUUCUCUGAAAG-----------------AACCGU----GAAAUUUGU-GGG-------CA----UCAAU-------CCC-AUGUGUGCUUUGACA-------------------------------------------------------------------------------------------------------GUGGUAGG-AAGC-C--A-AGAGUCGCU----CUCG--AAA---------------------------------------------------GCUCAGA--CCUAUCAU--CACAGUGGCA-GAAUA---UGACU---------UUUACCAUGAUUGA-----AUAAGGUGAAG---------------ACCU-AAU-UGUGUUUGAAAAAAUGU
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>URS0000D6BB81_12908/1-581
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>URS0000D6B554_12908/1-571
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>URS0000D69FB7_12908/1-572
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>URS0000D6AFFF_12908/1-587
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>URS0000D69945_12908/1-593
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>URS0000D6C942_12908/1-593
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>URS0000D6CC21_12908/1-591
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>URS0000D6A7B0_12908/1-536
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>URS0000D66B09_12908/1-549
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>URS0000D65F24_12908/1-549
AUAUGAAUUAUGCUUUAUGAUCAACUCGG-UUA--------GAAA--AGCGG--CUCCA-----CCGCU---CCGAGG--CACA-GGGUAGUACUC---------------AGU--UAAU----A--UG-CA--UAAG-------------GAUA---CUUU--UG-CA-AA-----A-AG--GCU-GUU-AA-U---CAUU-A-------------GCGA---------------UA-AUG-A-UU-AAG-A-AGAAGA----------AAA--------------------UCCUC-AACAGUAAA-------------------------------------CCU-GU-GGCGCAAA---------GUU-GAUCG-----U----AUUGAAAAGCACGGA-----ACUUCCGGGUG-CAAU--AAU---ACAC-G-------CUCG---------------CAGUG-----------------CGAG-A----A-----UAAACCUGA---AAGC---UUAU-------------CGG---CGUGGCAA-------CCG-----AUGAUUAC--------------------------------------------UCAGGUA---------------------------------------------------------------------------------------------------------AAGCCAU-------CAA-UGCACU------UUGCCUUGAC-----UUCGA----GAAA----------UCGGA--UAUAA-CGGAAGAC-----UCCGGUAAUGGUA----GCCGAAU---GGCAAUAAAUGAACUUU--------------------------------------------------------------------UACCUAAUUGAAUG-----------------GUCGGU----GACAUUUGC-AGG-------GA-A--CCUAU-------CCU-GUGUAAGAUGU----------------------------GGUU-----------------------------UUUAA---------------------------------AACC----GGGGUAAG-UAGU-U--A-GGGGUAGCU----CCCC--GAA---------------------------------------------------GCUCAAG--CUUAUCUC--CUUACUUGCU-GAAGA---UUAAUG---------CGUGAAAACAAU------GUACGGCGAAG---------------GUCG-GAC-CAUAAAGCAUAGUUGAU
>URS0000D6752A_12908/1-582
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>URS0000D688C3_12908/1-571
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>URS0000D69518_12908/1-615
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>URS0000D66BB2_12908/1-590
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>URS0000D6B6F1_12908/1-579
GAACAAUGUAUAAACUAUGACCAACUCAG-UGC--------AGAGG-GU-----ACAC---------AC-UGCUGAGA--UGGG-CGAUUA--------------------AGG--AAUG----G--CA-AA--GAGG-------------GAUA---CCU---UU-AG-CAU----A-UG--CCU-UUU-GA-C---CGUA-G-------------GCGA---------------CU--CG-G-UC-UUG-A-AGAGAU----------UAAU-------------------UUCUC-AACAAU----------------------------------------CGU-UU-AGUGCA-----------AUAAUUGAAU----A----GGAAUAAGACAGUA-----AGUGAAAGGGCG-AGAC--AAU---AGAC-G-------CUCU---------------CUGUG-----------------AGAG-A----A-----UAACCCU-----AGAUG--GUCGG------------CUGAU--GUGGUA------GUCAG-----UGACGGACAA--------------------------------------------AGGGA---------------------------------------------------------------------------------------------------------AUACCAAU-ACCAAUAA-CUCGUU------UAGCAGUGAU-----GCUGG----GUUU----------CCAGC--UAUAA-CUUUUGCU------UAUGUACCAGUA----GCCGAAUC--UGCUAUAGAUAAAGAAAAUAAUGGAGCAGAACUCCCUAUAGUUUA----------------------------------------AAUUUUUCUGAAA------------------GUCGGU----GAAAGUUGU-GGG-------UC----ACAAU-------CCC-AU-AUGGUUUUAGG-------------------------UCAAUGC--------------------------UUCG-------------------------------GCGUUGA---UGGUAUAAG-AAGC-CUA--GGAGUCGCU----CUCC--UUU---------------------------------------------------GCUCAGA--CUUAUAUCA-CCAU-UAGUC-UAAUA---AUUUG---------GUUCAAUUGUUU-------GUAAGGGGAAA---------------CCUU-GGU-CGUGAUUUAUAGUUCUU
>URS0000D6952A_12908/1-573
GAACAAUGUAUAAACUAUGACCAACUCAG-UGC--------AGAG--GGU----ACAC---------AC-UGCUGAGA--UGGG-CGAUUA--------------------AGG--AAUG----G--CG-AA--GAGG-------------GAUA---CCU---UU-AG-CAU----A-UG--CCU-UUU-GA-C---CGUA-G-------------GCGA---------------CU--CG-G-UC-UUG-A-AGAGAU----------UAAU-------------------UUCUC-AACAAU----------------------------------------CGU-UU-AGUGCA-----------AUAAUUGAAU----A----GGAAUAAGACAGUA-----AGUGAAAGGGCG-AGAC--AAU---AGAC-G-------CUCU---------------CUGUG-----------------AGAG-A----A-----UAACCCU-----AGAUGGUCGGC-------------UGA---UGUGGUAG-------UCA---GUGACGGACAA---------------------------------------------AGGGA---------------------------------------------------------------------------------------------------------AUACCAA-------UAA-CUCGUU------UAGCAGUGAU-----GCUGG----GUUU----------CCAGC--UAUAA-CUUUUGCU------UAUGUACCAGUA----GCCGAAUC--UGCUAUAGAUAAAGAAAAUAAUGGAGCAGAACUCCUUUUAAUUUA----------------------------------------AAUUUUUCUGAAAG------------------UCGGU----GAAAGUUGU-GGG-------UC----ACAGU-------CCC-AU-AUGGUUUUAGG-------------------------UCAAUGC--------------------------UUCG-------------------------------GUAUUGA---UGGUAUAAG-AAGC-CUA--GGAGUCGCU----CUCC--UUU---------------------------------------------------GCUCAGA--CUUGUAUCA-CUAU-UAGUC-UAAUA---AUUUG---------GUUCAAUUGUUU-------GUAAGGGGAAA---------------CCUU-GGU-CGUGAUUUAUAGUUCUU
>URS0000D66E57_12908/1-660
UGCUUUAAAAUGCACGCAUUAUAUCCUGG-UGA--------AGA---AUAG---CUAAUCA----CUAU--GCCAGGA--CAAUAUCUCAAUGC-----------------ACG--GACG----A--GA-CU--AAAG-------------GAUA---CUUU--GG-UC-GGU---AG-UUUACG--UUC-UC-A---AUGU-AUA-AGGC------UAU---------GCCGAAGU--CGG-A-GA-GUG-A-AGACGG----------GAAC-------------------CCGUC-AAGCAAGGA-------------------------------------GAG-UU-GGUGUGU----------AUUAUAUAC-----AA---CGAUUAGUGUGACA-----UGCUUUUGGUCA-GUGU--AAU---AGAC-G-------GCUC---------------CUGUG-----------------GAGC-A----A-----UAACCCUG----GGAA---CUG-G------------AUGAG-CUGGUAA------CUCAU----UACAGAUGG---------------------------------------------CAGGGA---------------------------------------------------------------------------------------------------------AUUACCAA----AACAA-GCUGAU------UUGCCGUGAUA----CCUGG----ACAA----------CCAGGAGUAUAA-CAAAAGCA----UAAGU-CGUAAGUA----GCCCAA----GGCAAUAAAAGAUUAUUUAUGAUAUUGAACAAUUAUCAAUGAAUA----------------------------------------AAACAAUCUGAAUG-----------------AUGGGU----GAAAGCUGG-AGG-------UG----AUAUU-------CCU-UCAUGGGUUUGAC--------------------------GCU-AAUUAAGG--ACGAACAUCACAAUCCAUCCGUAG---GGUGCGAGAGU-AUGUU-GUAGAAUUAAUUUAGC---UGGGGCAAG-AAGU-CAU--UAUCGA-CG----GAUA-UUUG---------------------------------------------------GCUCAGA--CUUGUCUC--CCCAUUCGCA-UAAUA---AAUUACA--------GUAUAUAAUUC-------AUAAGAUGAAUAAAA-----------GUCU-AUA-AUGUGUGUGUUUUAAAG
>URS0000D67FBE_12908/1-512
CCCUGUUCCCGGAAUCGCAUUGAAAAGUG-UAA--------CC-----CUCC--UGACU-----GGAG---GCACUUACUUUAA-CUCAUUAAAUCC--------------AAA--AGUC----G-UUU-AU--GAGG-------------GAUA---CCUU--AU-AAAUU-----C-CU--U---GUC---------------------------UCCG---------------------------GAC-U-ACUCU-----------UGAU--------------------UGAG-GAUUGGUAG-------------------------------------AGC-UAGAGUGCU-----------GCGU----GUUAU-G----AUACUAAGGUAACG-----AUAGAGUCGGUC-UCGC--AAG---AA-----------GGGU---------------UUU-------------------ACCC------U-------CGCCA-------AA---GUUAA------------CAGUU--GUGGCAU-----AACUG-----GAACCAAAG---------------------------------------------UGGUA----------------------------------------------------------------------------------------------------------UGCCAAA------UAA-GAGAU-------UUCUCGUGAU-----GUCCAA---GUGA---------UUGGGC--UAUAA-GAUUUUAU------CGGAUCU-----UUUUCCUUAA----GAGGCAGUUUACAAUAACU-------------------------------------------------------------------AUUGGUGUG---------------------UUAAGGAAAA----AGCGG-GUC-------UG----CCAAU-------GAC-GCCCGGGACUAGAAAU------------------------------------------------------------------------------------------------------GCGGUGAG-AGU--AACC-AGUGUCGCU----AACU-GGG-----------------------------------------------------G-CAUUCUCUCAUCAU--CCUG-UGACU-GAGUA---AGUAGCA----AUAACAAUGACGUG--------GUAGGGGUAAC---------------GCCC-CAA-UGCUUUUAUGGAGAGGU
>URS0000D65A76_12908/1-513
CCCUGUUCCCGGAAUCGCAUUGAAAAGUG-UAA--------CC-----CUCC--UGACU-----GGAG---GCACUUACUUUAA-CUCAUUAAAUCC--------------AAA--AGUC----G-UUU-AU--GAGG-------------GAUA---CCUU--AU-AAAUU-----C-CU--U---GUC---------------------------UCCG---------------------------GAC-U-ACUCU-----------UGAU--------------------UGAG-GAUUGGUAG-------------------------------------AGC-UAGAGUGCU-----------GCGU----GUUAU-G----AUACUAAGGUAACG-----AUAGAGUCGGUC-UCAC--AAG---AA-----------GGGU---------------UUU-------------------ACCC------U-------CGCCA-------AA---GUUAA------------CAGUU--GUGGCAU-----GACUG-----GAACCAAAG---------------------------------------------UGGUA----------------------------------------------------------------------------------------------------------UGCCAAA----A-AAA-GAGAU-------UUCUCGUGAU-----GUCCAA---GUGA---------UUGGGC--UAUAA-GAUUUUAU------CGGAUCU-----UUUUCCUUAA----GAGGCAGUUUACGAUAACU-------------------------------------------------------------------AUUGGUGUG---------------------UUAAGGAAAA----AGCGG-GUC-------UG----CCAAU-------GAC-GCCCGGGACUAGAAAU------------------------------------------------------------------------------------------------------GCGGUGAG-AGU--AACC-AGUGUCGCU----AACU-GGG-----------------------------------------------------G-CAUUCUCUCAUCAU--CCUG-UGACU-GAGUA---AGUAGCA----AUAACAAUGACGUG--------GUAGGGGUAAC---------------GCCC-CAA-UGCUUUUAUGGAGAGGU
Rfam family RF03087 maps to these 30 chains: 9ISV|1|A, 9J3R|1|A, 9J3R|1|B, 9J3R|1|C, 9J3R|1|D, 9J3T|1|A, 9J3T|1|B, 9J3T|1|C, 9J3T|1|D, 9J3T|1|E, 9J3T|1|F, 9J3T|1|G, 9J3T|1|H, 9MM6|1|A, 9MM6|1|E, 9MM6|1|I, 9MM6|1|M, 9MM6|1|Q, 9MM6|1|U, 9MM6|1|Y, 9MM6|1|c, 9MME|1|U, 9MME|1|Y, 9MME|1|c, 9MME|1|g, 9MME|1|k, 9MME|1|o, 9MME|1|s, 9MME|1|w, 9MMG|1|c See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.
Jump to results for:
- Loop 1IL Column numbers: 29-48, 69-73
- Loop 2HL Column numbers: 52-65
- Loop 3IL Column numbers: 81-82, 351-353
- Loop 4IL Column numbers: 83-84, 348-350
- Loop 5IL Column numbers: 84-86, 347-348
- Loop 6J4 Column numbers: 87-112, 186-188, 251-256, 298-346
- Loop 7IL Column numbers: 114-117, 181-184
- Loop 8IL Column numbers: 118-119, 178-180
- Loop 9IL Column numbers: 119-125, 171-178
- Loop 10IL Column numbers: 125-128, 169-171
- Loop 11IL Column numbers: 129-131, 166-168
- Loop 12IL Column numbers: 132-135, 162-165
- Loop 13HL Column numbers: 138-159
- Loop 14IL Column numbers: 190-192, 247-249
- Loop 15IL Column numbers: 193-195, 244-246
- Loop 16IL Column numbers: 195-199, 242-244
- Loop 17IL Column numbers: 201-202, 238-240
- Loop 18IL Column numbers: 202-204, 237-238
- Loop 19HL Column numbers: 204-237
- Loop 20HL Column numbers: 260-294
- Loop 21IL Column numbers: 419-421, 751-752
- Loop 22J3 Column numbers: 422-446, 490-506, 625-750
- Loop 23HL Column numbers: 449-487
- Loop 24IL Column numbers: 511-522, 571-620
- Loop 25IL Column numbers: 525-539, 562-568
- Loop 26HL Column numbers: 541-560
- Loop 27HL Column numbers: 781-800
- Loop 28IL Column numbers: 833-843, 974-983
- Loop 29HL Column numbers: 848-969
- Loop 30IL Column numbers: 987-989, 1021-1022
- Loop 31IL Column numbers: 989-990, 1019-1021
- Loop 32HL Column numbers: 991-1018
- Loop 33J3 Column numbers: 1026-1027, 1134-1139, 1250-1251
- Loop 34IL Column numbers: 1027-1060, 1133-1134
- Loop 35HL Column numbers: 1061-1132
- Loop 36IL Column numbers: 1139-1140, 1247-1250
- Loop 37IL Column numbers: 1146-1149, 1240-1241
- Loop 38IL Column numbers: 1149-1150, 1233-1240
- Loop 39IL Column numbers: 1151-1153, 1179-1232
- Loop 40IL Column numbers: 1155-1158, 1174-1177
- Loop 41HL Column numbers: 1161-1171
- Loop 42HL Column numbers: 1308-1328
Loop 1 Internal loop
Column numbers: 29-48, 69-73 - View nucleotides in PDB file(s)
Scored sequences and counts
G-UGA--------AGAU--G*C-UGC 35
G-UGA--------AGA---A*U--GC 21
G-UGA--------AGA---G*U--GC 16
G-UGU--------AGAU--A*U-UGC 14
G-UGA--------AGAU--A*U-UGC 10
G-UGU--------AUG---C*G-GUC 8
G-UGC--------AGA---G*U--GC 8
G-UGA--------AGA---G*U-UGC 7
A-UGA--------ACAA--A*U---U 7
C-UGA--------AGA---G*U--GG 7
G-UGA--------AUAA--A*U---C 7
G-UGUGAGAAAUCGAA---A*U---C 5
G-UGA--------AGAU--C*G-UGC 4
G-UGA--------AGA---C*G--GC 4
G-UGC--------AGA---G*C--GC 4
G-UGG--------AGA---G*U--GC 4
G-UGA--------AAA---C*G---C 4
G-UGC--------ACUAAAG*C-CUC 3
G-UGA--------AGAA--G*C-UGC 3
A-UGA--------AAAA--C*G--G- 3
G-UGA--------AGU---C*G--GC 3
G-UGC--------AGA---A*U--GC 3
G-UGC--------AGA---U*A--GC 3
A-UGU--------AUA---A*U---U 3
G-UGU--------AU----U*G--UC 3
G-UGUGCGAAAGCGAA---A*U---C 2
G-UGA--------AGAU--G*U-UGC 2
G-UGC--------AGAU--A*U-UGC 2
G-UGC--------AGAU--G*C-UGC 2
G-UGC--------AGAU--U*A-UGC 2
G-UGU--------AGAU--G*C-UGC 2
G-UGU--------AGAU--U*A-UGC 2
G-UGA--------AGA---A*U-UGC 2
G-UGA--------AGA---G*C-UGC 2
UCUGU--------AA----G*U-AGA 2
G-UGA--------ACAA--A*U---C 2
G-UGC--------AGA---C*G--GC 2
G-UGC--------AUAA--C*G---C 2
G-UGU--------AGA---A*U--GC 2
G-UUA--------UAAA--A*U---C 2
C-UGU--------AA----G*U--AG 2
G-UGA--------AUG---U*G---C 2
G-UGC--------AUA---A*U---C 2
G-UGU--------AG----A*U--GC 2
G-UGU--------AGA---U*G---C 2
G-UGU--------AUA---A*U---C 2
U-UGG--------AAA---C*G---G 2
A-UGA--------AA----A*U---U 2
G-UGG--------AU----G*C---C 2
G-UAA--------CC-----*---GC 2
G-UGC--------ACUAAAG*CCCUC 1
G-UGC--------ACUAAAG*C-AUC 1
G-UGC--------AGAGG-G*C-UGC 1
G-UGU--------AGAU--G*CCUGC 1
U-UGG--------AAACA-C*G-UGG 1
G-UGA--------AUAAA-G*C--UC 1
G-UGC--------AGAG--G*C-UGC 1
G-UGC--------AGAU--C*G-UGC 1
G-UGC--------AGAU--G*U-UGC 1
G-UGC--------AUGA--A*U-UGC 1
G-UGG--------AUAA--G*C-GCC 1
G-UGU--------AGAU--C*G-UGC 1
G-UGU--------AUAAA-U*A--UC 1
G-UUA--------AGAU--C*G-UGC 1
A-UGU--------AUGA--A*U--GU 1
G-UGA--------AGAA--G*U--GC 1
G-UGC--------AGA---G*U-UGC 1
G-UGC--------AGAA--U*A--GC 1
G-UGC--------AUAA--A*U--UC 1
G-UGC--------CAAA--G*U--UC 1
G-UGU--------AUA---A*U-GGC 1
G-UUA--------UUAAA-A*U---C 1
UCUGU--------AA----G*U-AGG 1
A-UGA--------AAGA--C*G---U 1
A-UGA--------ACAA--U*A---U 1
A-UGA--------CAGA--C*G---U 1
A-UGC--------ACA---A*U--UU 1
G-UCA--------UAAA--A*U---C 1
G-UCA--------UAAA--U*A---C 1
G-UGA--------AGA---U*A--GC 1
G-UGA--------AUA---G*C--AC 1
G-UGC--------ACUA--A*U---C 1
G-UGC--------UAAA--C*G---C 1
G-UGU--------AGA---G*U--GC 1
G-UGU--------AUG---A*U--GC 1
G-UUA--------AAAA--G*U---C 1
G-UUA--------GAAA--A*U---C 1
G-UUG--------AAG---C*G--UC 1
U-UGA--------UAAA--C*G---G 1
A-UGC--------ACA---A*U---U 1
G-UGA--------AAA---A*U---C 1
G-UGA--------AGA---U*G---C 1
G-UGC--------ACA---A*U---C 1
G-UGC--------AGA---C*G---C 1
G-UGC--------AGA---U*G---C 1
G-UGU--------AAA---C*G---C 1
U-UGG--------AAAC---*---GG 1
U-UUG--------UAA---U*A---A 1
A-UAA--------UU----C*G---U 1
G-UGA--------AG----U*G---C 1
G-UGG--------AG----U*G---C 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_53596.1
Basepair signature:
|
8.62 | -73.59 | 6 | 4 |
|
| 2 |
Motif group IL_21173.1
Basepair signature:
|
7.24 | -73.00 | 6 | 5 |
|
| 3 |
Motif group IL_33711.1
Basepair signature:
|
3.45 | -106.02 | 7 | 6 |
Minor groove platform |
| 4 |
Motif group IL_38394.1
Basepair signature:
|
3.45 | -496.29 | 5 | 3 |
|
| 5 |
Motif group IL_74184.1
Basepair signature:
|
3.10 | -60.51 | 8 | 5 |
|
| 6 |
Motif group IL_49612.1
Basepair signature:
|
3.10 | -104.09 | 6 | 5 |
|
| 7 |
Motif group IL_27393.10
Basepair signature:
|
1.72 | -120.35 | 8 | 5 |
|
| 8 |
Motif group IL_88082.1
Basepair signature:
|
1.38 | -119.28 | 6 | 5 |
|
| 9 |
Motif group IL_41203.4
Basepair signature:
|
1.38 | -179.93 | 7 | 5 |
SSU/LSU pseudoknot |
| 10 |
Motif group IL_38186.6
Basepair signature:
|
1.03 | -176.43 | 5 | 4 |
|
Loop 2 Hairpin loop
Column numbers: 52-65 - View nucleotides in PDB file(s)
Scored sequences and counts
---GUGACA----- 21
---UGCUC------ 20
A--AGAGCA----U 12
U--UUUC------A 12
A--AGACCA----U 9
UU-UUUC-----AG 7
U--UAGUC-----A 7
---GUGAUA----- 7
AUUUCGCA---GAU 5
U--GUCA------G 5
---CUAACAA---- 4
---GUGUCAA---- 4
A--UGACU-----U 4
C--UUGCU-----G 4
U--UACUC-----A 4
---UGGUCA----- 4
U--GCCA------G 4
---UAAUC------ 4
A--CUGAUAA---U 3
AU-GCGAU----GU 3
A--AUGCCA----U 3
A--AUUCCA----U 3
U--UUUUCA----G 3
---CUAACCA---- 3
A--UGACC-----U 3
G--UGACA-----C 3
---AUAUCA----- 3
---UUAAUC----- 3
C--GCCA------G 3
U--GGUC------A 3
---UGUCA------ 3
GUGUCGAC---CAC 2
UC-CUGACA---GG 2
U--CUAAUCA---A 2
U--GUGACAA---G 2
UU-UAACA----AA 2
A--ACACCA----U 2
U--AUGACA----G 2
UU-AAUC-----AA 2
---CUAAUCA---- 2
---CUGACAA---- 2
---CUUGUCA---- 2
---GUGACGA---- 2
C--UGACU-----G 2
G--CUCCA-----C 2
U--UGUCA-----A 2
---CUGUCA----- 2
U--AAUC------A 2
---UAGUC------ 2
---UUGCU------ 2
---ACAC------- 2
---GUCA------- 2
---UGCA------- 2
GUCGCGCA---GAU 1
AA-CCAACA---UU 1
GG-AUACCG---CC 1
GG-GAGACA---CC 1
GUUUUCA----GAC 1
---CAUAACCAA-- 1
AU-UCGAU----GU 1
AUUAAUC----AA- 1
CU-UUUCA----AC 1
G--UAAACUG---C 1
GU-UGUCA----AC 1
U--CUAACAA---A 1
UC-UGGCA----GA 1
---GAUGAAAA--- 1
A--AGACAA----U 1
A--AUGCAA----U 1
A--UUGACA----A 1
C--CUGACA----G 1
G--AUACCA----C 1
G--CAAUAU----C 1
U--CUGAAC----A 1
U--CUGGCA----G 1
U--UUGACA----A 1
UU--AAUC----AA 1
---CCAGUCA---- 1
---CUAGUCC---- 1
---GUAAGCA---- 1
---GUAGUUA---- 1
---GUGACAA---- 1
---UUAACCA---- 1
---UUAGCAA---- 1
---UUGACAA---- 1
A--GCUAC-----U 1
C--GGUCA-----G 1
U--GAACC-----A 1
U--UAACC-----A 1
U--UAGUU-----A 1
U--UGAAC-----A 1
U--UGACC-----G 1
U--UGAUA-----A 1
---AAGCCA----- 1
---ACACCA----- 1
---AGACCA----- 1
---AGAGCA----- 1
---AGGCUA----- 1
---AUGACA----- 1
---AUGCCA----- 1
---AUGUUA----- 1
---GUGAU-----A 1
---UGUCAA----- 1
---UGUUAC----- 1
---UUAGUC----- 1
---UUUGUC----- 1
U--GAGA------A 1
U--UUAC------A 1
---CUGCU------ 1
---UAACA------ 1
---UAUCA------ 1
---UGCAA------ 1
---UGUUA------ 1
---UUACA------ 1
U---AAUC------ 1
U--GUC-------A 1
---GACA------- 1
---GCAA------- 1
---UGAC------- 1
---UGAU------- 1
---UGUC------- 1
---GUU-------- 1
---UAC-------- 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_70782.2
Basepair signature:
|
36.21 | -48.58 | 3 | 3 |
|
| 2 |
Motif group HL_50006.2
Basepair signature:
|
18.97 | -41.88 | 4 | 3 |
|
| 3 |
Motif group HL_38168.1
Basepair signature:
|
16.90 | -152.00 | 4 | 3 |
|
| 4 |
Motif group HL_04783.2
Basepair signature:
|
15.86 | -43.85 | 3 | 2 |
|
| 5 |
Motif group HL_64690.6
Basepair signature:
|
15.86 | -142.32 | 4 | 3 |
|
| 6 |
Motif group HL_67667.2
Basepair signature:
|
12.07 | -1770.71 | 4 | 3.5 |
|
| 7 |
Motif group HL_56131.2
Basepair signature:
|
11.72 | -54.89 | 3 | 3 |
|
| 8 |
Motif group HL_31585.4
Basepair signature:
|
11.72 | -557.28 | 3 | 2 |
Purine riboswitch |
| 9 |
Motif group HL_65794.5
Basepair signature:
|
11.03 | -1544.01 | 2 | 2 |
Pseudoknot geometry |
| 10 |
Motif group HL_56334.1
Basepair signature:
|
10.69 | -368.29 | 3 | 2 |
Mini UNCG |
Loop 3 Internal loop
Column numbers: 81-82, 351-353 - View nucleotides in PDB file(s)
Scored sequences and counts
UU*A-G 30
UA*U-A 29
CG*C-G 24
UA*U-G 24
CA*U-G 20
UG*C-A 18
AU*A-U 17
AG*C-U 13
GC*G-U 12
UG*U-A 12
CG*U-G 11
UU*A-A 9
GC*G-C 8
AA*U-U 6
CU*A-G 6
AC*G-U 5
GU*A-C 5
GU*A-U 4
CC*GUG 2
UU*AGA 2
AA*U-G 2
AU*A-G 2
AU*G-U 2
CC*G-G 2
UG*U-G 2
CC*GAG 1
CC*GGG 1
CG*CAG 1
CG*CGG 1
CU*AUG 1
CU*GUG 1
UA*UAA 1
UA*UAG 1
UA*UGG 1
AC*G-G 1
AG*U-G 1
AU*C-U 1
CU*U-G 1
GA*U-G 1
GG*C-U 1
UA*C-A 1
UG*C-G 1
UU*G-G 1
Omitted sequenced and counts
UA*--A 2
-U*A-- 2
-A*--- 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_07039.3
Basepair signature:
|
97.89 | 19.90 | 2 | 1 |
Major groove platform |
| 2 |
Motif group IL_42771.1
Basepair signature:
|
95.79 | 19.24 | 2 | 1 |
Multiple bulged bases |
| 3 |
Motif group IL_84476.1
Basepair signature:
|
94.74 | 21.26 | 3 | 2 |
Multiple bulged bases |
| 4 |
Motif group IL_81831.1
Basepair signature:
|
88.77 | 16.70 | 3 | 1 |
Intercalated cWS |
| 5 |
Motif group IL_00225.13
Basepair signature:
|
70.18 | 3.80 | 1 | 1 |
Single bulged G |
| 6 |
Motif group IL_73452.2
Basepair signature:
|
69.82 | 14.88 | 3 | 1 |
|
| 7 |
Motif group IL_66635.5
Basepair signature:
|
69.82 | 10.91 | 3 | 1 |
Major groove intercalation |
| 8 |
Motif group IL_33761.2
Basepair signature:
|
69.82 | 2.88 | 4 | 1 |
|
| 9 |
Motif group IL_26793.1
Basepair signature:
|
61.40 | 8.88 | 2 | 1 |
Single stack bend |
| 10 |
Motif group IL_90729.1
Basepair signature:
|
61.40 | 6.50 | 2 | 1 |
Single stack bend |
Loop 4 Internal loop
Column numbers: 83-84, 348-350 - View nucleotides in PDB file(s)
Scored sequences and counts
CA*U-G 50
UC*G-A 31
UA*U-A 20
AC*G-U 17
GU*G-C 14
AU*A-U 11
CG*C-G 11
GU*A-U 10
UA*U-G 9
AA*U-U 8
GU*A-C 8
UU*A-A 8
UU*A-G 8
GC*G-C 7
GG*U-C 7
UG*U-G 7
CC*G-G 6
UG*C-A 6
UU*G-A 6
CU*A-G 5
CC*A-G 4
CG*U-G 4
CG*C-A 3
GA*U-C 3
GC*A-C 3
GC*G-U 3
GG*U-U 3
UC*G-G 3
AA*C-U 2
AU*G-U 2
CU*G-G 2
CA*UAG 1
CA*C-G 1
GC*G-A 1
GG*C-C 1
GU*G-U 1
UG*C-G 1
UU*G-G 1
Omitted sequenced and counts
U-*--G 2
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_07039.3
Basepair signature:
|
99.31 | 17.35 | 2 | 1 |
Major groove platform |
| 2 |
Motif group IL_84476.1
Basepair signature:
|
95.83 | 24.85 | 3 | 2 |
Multiple bulged bases |
| 3 |
Motif group IL_42771.1
Basepair signature:
|
92.01 | 17.64 | 3 | 1 |
Multiple bulged bases |
| 4 |
Motif group IL_81831.1
Basepair signature:
|
80.90 | 15.08 | 3 | 1 |
Intercalated cWS |
| 5 |
Motif group IL_00225.13
Basepair signature:
|
78.47 | 4.69 | 1 | 1 |
Single bulged G |
| 6 |
Motif group IL_73452.2
Basepair signature:
|
76.39 | 13.99 | 3 | 1 |
|
| 7 |
Motif group IL_33761.2
Basepair signature:
|
75.00 | 4.12 | 2 | 1 |
|
| 8 |
Motif group IL_66635.5
Basepair signature:
|
71.88 | 10.06 | 2 | 1 |
Major groove intercalation |
| 9 |
Motif group IL_26793.1
Basepair signature:
|
67.01 | 7.86 | 2 | 1 |
Single stack bend |
| 10 |
Motif group IL_90729.1
Basepair signature:
|
67.01 | 4.86 | 2 | 1 |
Single stack bend |
Loop 5 Internal loop
Column numbers: 84-86, 347-348 - View nucleotides in PDB file(s)
Scored sequences and counts
C-U*AG 41
A-C*GU 28
A-G*UU 20
A-U*AU 16
U-G*CA 16
A-A*UU 15
C-C*GG 13
U-A*UG 13
U-A*UA 11
U-C*GA 11
U-U*AA 10
C-A*UG 8
G-U*AU 8
G-C*GC 7
A-U*GU 6
G-A*UC 6
A-G*CU 4
G-C*GU 4
U-C*GG 4
U-G*CG 4
GAC*GC 3
C-A*UA 3
C-G*CG 3
G-A*UU 3
G-G*CU 3
U-U*AG 3
GUC*GC 2
A-C*GC 2
C-U*UA 2
G-U*GC 2
U-U*GA 2
UAU*AG 1
A-A*CU 1
A-U*GC 1
A-U*UU 1
C-C*UG 1
C-G*UG 1
C-U*GG 1
G-A*CU 1
G-G*CC 1
G-G*UU 1
G-U*AC 1
G-U*GU 1
U-A*CG 1
Omitted sequenced and counts
C-U*-A 2
--A*U- 2
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_07039.3
Basepair signature:
|
98.25 | 18.08 | 2 | 1 |
Major groove platform |
| 2 |
Motif group IL_42771.1
Basepair signature:
|
96.15 | 19.06 | 3 | 1 |
Multiple bulged bases |
| 3 |
Motif group IL_84476.1
Basepair signature:
|
95.80 | 24.71 | 3 | 2 |
Multiple bulged bases |
| 4 |
Motif group IL_81831.1
Basepair signature:
|
86.71 | 16.36 | 4 | 1 |
Intercalated cWS |
| 5 |
Motif group IL_00225.13
Basepair signature:
|
85.31 | 5.39 | 1 | 1 |
Single bulged G |
| 6 |
Motif group IL_66635.5
Basepair signature:
|
78.32 | 11.27 | 2 | 1 |
Major groove intercalation |
| 7 |
Motif group IL_33761.2
Basepair signature:
|
78.32 | 6.54 | 3 | 1 |
|
| 8 |
Motif group IL_73452.2
Basepair signature:
|
73.78 | 15.39 | 3 | 1 |
|
| 9 |
Motif group IL_26793.1
Basepair signature:
|
68.88 | 9.38 | 2 | 1 |
Single stack bend |
| 10 |
Motif group IL_90729.1
Basepair signature:
|
68.88 | 5.76 | 2 | 1 |
Single stack bend |
Loop 6 4-way junction loop
Column numbers: 87-112, 186-188, 251-256, 298-346 - View nucleotides in PDB file(s)
Scored sequences and counts
GGAAUGAAGCU--------------C*G-C*G-A-AG*U-GAAAGUAA--------------------------------------C 17
CGGAAAAUG----------------A*U-U*C-G-AG*C-AAGAUUAA--------------------------------------G 11
GGAAUAAAGCU--------------C*G-C*G-A-AG*U-GAAAGUAA--------------------------------------C 6
GGAAGCUGU----------------G*U-U*A-GAA-*A-ACACAGAA--------------------------------------C 6
CGUGCUAAAUCGCU-----------C*G-G*G-A-AU*A-AAGACGUU--------------------------------------G 5
UGAAUUG------------------A*U-U*G-A-AG*C-AACAAAGU--------------------------------------G 4
UUAAA--------------------C*GAG*U-ACGA*U-GAAUU--A--------------------------------------A 4
CGGAAAGCCA---------------C*G-U*G-A-AG*C-AACGGCAAA-------------------------------------G 3
UUGAAUGUAG---------------A*U-U*A-A-AG*C-AAAUACAAG-------------------------------------A 3
AGUAAUUUC----------------C*G-G*G-G-AG*C-AACAAAAA--------------------------------------U 3
CUGAAUG------------------A*UUG*U-U-CU*G-AGUAUCAAG-------------------------------------G 3
UGAAUGCAG----------------A*U-U*A-U-AG*C-AAGUGCAA--------------------------------------G 3
UGGUAACG-----------------A*U-U*G-A-AG*C-AACAAUGC--------------------------------------C 3
UGGUGACG-----------------A*U-U*G-A-AG*C-AACAAUGC--------------------------------------C 3
UACAUAAUUCC--------------C*-UU*G-U---*--UAAGAAGAUUGAGGGUGU----------------------------A 2
UCUUAAUAACUACU-----------A*U-U*A-G-CA*G-UAGAGAGA--------------------------------------A 2
GUGUGACGGAA--------------C*G-U*G-G-AG*C-AACUUCAGGG------------------------------------C 2
CGAAAAGUGCU--------------C*G-C*G-A-AU*A-GAAAGUAAA-------------------------------------G 2
AACCUCUAAUU--------------C*GA-*--UCAG*U-GCGUGGGU--------------------------------------U 2
CGGAACGCCA---------------C*G-U*G-A-AG*C-AACGGCAAA-------------------------------------G 2
CGUGAUUCAG---------------A*U-U*G-G-AG*C-AACUGAAGG-------------------------------------G 2
GGUAGUACUC---------------A*U-G*G-A-AG*C-AACAGUAAA-------------------------------------C 2
GCUAAACAAGG--------------C*G-U*G-A-AU*A--AACUUAA--------------------------------------C 2
GGAAUAUUC----------------A*U-G*G-A-AG*C-AACAACAAA-------------------------------------C 2
UGGAUGUCG----------------G*C-U*A-UACU*U-AAAGACAA--------------------------------------G 2
ACAACCGGA----------------G*U-U*G-G-AG*C-AAUCGAAG--------------------------------------U 2
AGUAGUUUC----------------U*A-G*G-G-AG*C-AACAAAAA--------------------------------------U 2
GGUACUUUC----------------A*U-G*G-G-AG*C-AACAAAAA--------------------------------------C 2
UGAAUAGUG----------------G*U-U*G-UAAG*C--AAAACAU--------------------------------------G 2
UGAAAUGGU----------------C*G-U*G-A-A-*U-AAAUCAAA--------------------------------------G 2
UGAAUAGUG----------------G*U-U*U-A-AG*C-AAAA-CAU--------------------------------------G 2
UGGUGAUG-----------------A*U-U*G-A-AG*C-AACAACGC--------------------------------------C 2
GGUAAUG------------------A*U-U*G-A-AG*C-AACAAUUC--------------------------------------U 2
UCAAGG-------------------A*U-U*G-A-AG*C-AACCGAGCA-------------------------------------G 2
UGAAAUGGU----------------C*G-U*G-A-A-*--AAAUCAAA--------------------------------------G 2
UUAAACCC------------------*A-G*U-ACGA*U-GAA--UUA--------------------------------------A 2
CGCA---------------------C*G-U*G-GAUG*CAAAGCG--A--------------------------------------G 2
GAUUA--------------------A*U-U*G-A-AG*C-AACAAU----------------------------------------C 2
ACCUAUAAAUAAUACUCACAUUCCUG*U-G*G-A-AA*G-AAAAGGAUG------------------------------------GU 1
UCUAGUCACAUAUGACAAAUUAG--A*UUU*A-CAAG*C-AAGUAAGUG-------------------------------------G 1
ACCCACCUGCGGGUAAGAAU-----A*AAA*G-CCAC*A--AUGGUUCU-----------------------------------GGG 1
CUAAGGGCGACCGAAAGUCCUAA--A*UAC*G---AC*G-UGUGAAGAU-------------------------------------G 1
CUCCUAAUCAAGACGCCCCCUG---C*G-C*C-AACG*C-GCCGGCCGG-------------------------------------G 1
UAGGGUUAAUCUCGUAAAGCGG---C*AAA*C-U-AC*G-UGCCGUGGG-------------------------------------G 1
UCUACCAUUGUUAUGGGAAGCAG--A*U-U*U-A-CG*C-AAGUGUGUG-------------------------------------G 1
CCUUCGCUUUCGAGCGUACUACG--C*GCU*U-U--G*C-UGUUAG-AG-------------------------------------G 1
UACAUAAUUCU--------------C*AAU*U-C-AU*G-AAAGAAGAUUGAGAGUGU----------------------------A 1
ACCGCUCGAAGAGAGUGGUCUAG--A*U-G*C-U-GC*U-----AGAGG-------------------------------------U 1
UACAUAAUUCC--------------U*AAU*U-C-A-*--UAAGAAUAUUGAGGGUGU----------------------------A 1
AUCUGCCUUAAGAC--------UCUC*G-G*G-A-AU*A-AAGAAGCA-------------------------------------UU 1
UCUUAAUAACUACU-----------A*UUU*GAG-CA*G-UAGAGAGA--------------------------------------A 1
UCUUGUU------------------C*G-U*A-AAAU*A-AAAUGUAGGGAAAGAG------------------------------A 1
UGGACAUGAAAAGGU----------C*-GU*G-GAGA*C-AAACCUAA--------------------------------------G 1
ACCUAUCAAAGC-------------A*U-U*A-AACU*A-GUGUGUGUG------------------------------------GU 1
CCGUGCUAAAUCGCU----------C*G-G*G-A-AU*A-AAGACGUU--------------------------------------G 1
UGGUAAUAAAUCCU-----------G*U-C*G-G-GG*C-UUGGGUAAA-------------------------------------G 1
CGUACUAAAUCGCU-----------C*G-G*G-A-AU*A-AAGACGUU--------------------------------------G 1
GGGAUAAGUCGAU------------A*U-G*G-ACUA*U-AAUCGCAA--------------------------------------A 1
UCAAAAAGACU--------------C*G-G*G-A-AU*A-AAGUCUAAAC----------------------------------G-G 1
CCUGUAAGUC---------------A*U-U*G-AUAG*U-UUCUGCCA-------------------------------------GG 1
CCUGUAAGUC---------------A*U-U*G-AUAG*U-UUCUGCCAG-------------------------------------G 1
CGAAAGACGCU--------------C*G-C*G-A-AC*G-GAAAGUAAA-------------------------------------G 1
CGGAACAGCUG--------------A*U-U*G-A-AG*C-AACAGAGAA-------------------------------------G 1
CGGAACUGCCU--------------A*U-A*--AAAG*C-AAUGGAGAA-------------------------------------G 1
CUGAAUG------------------A*UUG*U-U-CU*U-AGGAGUAUCAAG----------------------------------G 1
UGAAUAGGCU---------------A*U-U*A-GGAG*C-AAAGCCUAA-------------------------------------G 1
ACUCAAGGGAU--------------A*U-U*C-GGAG*C-AAGGGAG---------------------------------------U 1
AGUAAAUUG----------------U*AAC*G-GUAG*C-GAGAAUAA--------------------------------------U 1
AUCUAUAAAUCGAC-----------A*A-A*U-GACC*G------UU-------------------------------------GGU 1
CGGAACGCCG---------------C*G-U*G-A-AG*C-AACAGCAAA-------------------------------------G 1
CGGAGCGCCG---------------C*G-U*G-A-AG*C-AACGGCAAA-------------------------------------G 1
CGGAUAGGGCU--------------C*G-C*G-A-A-*A-GAAAGUAAA-------------------------------------G 1
GGAAUAAAGCU--------------C*-GC*G-A-AG*U-GAAAGUAA--------------------------------------C 1
GUGUGACGGAA--------------C*G-U*G-G-A-*A-ACUCCAGAG-------------------------------------C 1
UCUCAAGGGAC--------------A*U-U*C-GGAG*C-AAGGGAG---------------------------------------A 1
UGGAAUUCUU---------------A*U-G*G-G-AG*C-AACAGAAAA-------------------------------------G 1
UGGUAAGUC----------------A*UGU*G-G-AG*CAAAACGAGA--------------------------------------G 1
UUAGAUGUGU---------------A*U-U*A-U-AG*U-AAAUGCAAG-------------------------------------A 1
UUGAACGAUG---------------C*G-U*G-U-UC*G-AAUAUCAAG-------------------------------------G 1
UUGAACGUAG---------------A*U-U*A-A-AG*C-AAAUACAAG-------------------------------------A 1
AGUAGUUCC----------------C*G-C*G-GAAG*C-AACGAAAA--------------------------------------U 1
AGUAGUUCC----------------C*G-C*G-GGAG*C-AACGAAAA--------------------------------------U 1
AUCUAUAAAUCGAC------------*-AA*U-GACC*G-----UUGA--------------------------------------U 1
CGUAUAUCG----------------A*U-U*A-UAGU*U-AAAGAUAA--------------------------------------G 1
CUGUAAGUC----------------A*U-U*G-AUAG*U-UUCUGCCA--------------------------------------G 1
GAGAAAACG----------------A*U-U*G-G-AG*C-AACAAUGCU-------------------------------------U 1
GCUAAACAAGG--------------C*G-U*G-A-AU*A-AACU-UAA--------------------------------------C 1
GCUAGACAAGG--------------C*G-U*G-A-AU*A--AACUUAA--------------------------------------C 1
UGAACAACA----------------G*C-C*G-AUAA*G-AAUGUUAA--------------------------------------G 1
UGAAUAUCG----------------G*C-U*A-UAUU*U-AAAGAUAA--------------------------------------G 1
UGAAUGUCG----------------G*C-U*A-UACU*U-AAGGACAA--------------------------------------G 1
UGGAUAUCG----------------C*G-U*A-UACC*U-AAAGAUAA--------------------------------------G 1
UGUAUAACG----------------A*U-U*G-AAAG*C-GAAGUCAC--------------------------------------G 1
AGUAAUUUC----------------C*G-G*--GGAG*C-AACAAAAA--------------------------------------U 1
CCAAGAAA------------------*A-C*G-U-AU*A-AACCGCUUU------------------------------------GG 1
CCCAAGGGAU---------------A*U-U*C-GUAG*C-AAGGGG----------------------------------------G 1
CGAACGCUA----------------G*C-U*C-U-AG*C-GAAAGCAA--------------------------------------G 1
CGCAUUCCG----------------U*A-U*G-A-AG*C-AACGGACG--------------------------------------G 1
CGGAAAAUG----------------A*U-U*C-A-AG*C-AAGAUUAA--------------------------------------G 1
CGUAAGGUC----------------G*CGU*G-U-AG*C-AAAC-CAA--------------------------------------G 1
CGUACAGCG----------------A*U-U*A-U-AG*C-AAAGCUAA--------------------------------------G 1
CGUAGAAUG----------------A*U-U*C-U-AG*C-AAGAUUAA--------------------------------------G 1
CUGAAUG------------------A*U-U*U-CUUC*G-AGUAUCAAG-------------------------------------G 1
GGUAUAUCA----------------A*U-U*G-A-AG*C-AACGAUAA--------------------------------------C 1
GGUAUGUUG----------------A*U-U*G-G-AG*C-AACGACAA--------------------------------------C 1
GUCACUUG-----------------A*U-U*G-A-AG*C-AACAGAAAA-------------------------------------C 1
UAAAUGCAA----------------A*U-U*A-U-AG*C-AAAUGCAA--------------------------------------G 1
UGAACAUUU----------------A*U-A*G-A-AG*C-AACAAUAA--------------------------------------G 1
UGAACGUUG----------------A*U-U*G-U-AG*C-AAUAACAA--------------------------------------A 1
UGAAUAGUC----------------A*U-G*G-A-AG*C-GACACUAA--------------------------------------G 1
UGAAUGCAA----------------A*U-U*G-U-AA*U-AAGUGCAA--------------------------------------G 1
UGAAUGCAA----------------A*U-U*G-U-AG*C-AAGUGCAA--------------------------------------G 1
UGAAUGCAG----------------A*U-U*A-U-AG*C-AAAUGCAA--------------------------------------G 1
UGAAUGCAG----------------A*U-U*G-U-AG*C-AAGUGCAA--------------------------------------G 1
UGAAUGUAG----------------A*U-U*A-U-AG*C-AAAUACAA--------------------------------------G 1
UGAAUGUAU----------------C*G-U*G-A-AG*C-AACUACAA--------------------------------------G 1
UGGAUAAAU----------------C*G-U*G-G-AG*C-AACUUUAA--------------------------------------G 1
UGUACAUAG----------------C*G-U*A-G-AG*C-GAUUAUAA--------------------------------------A 1
UGUAUGUGG----------------C*G-U*A-A-AU*A-AAUCACAA--------------------------------------G 1
AAAAGAGAA-----------------*A-C*G-U-AU*A-AACCGCUU--------------------------------------U 1
GGUUAUAUG----------------A*U-U*G-G-AG*C-AAUACA-C--------------------------------------C 1
UACAUAAUUCC--------------C*-UU*G-U---*--UAAGAAGA--------------------------------------U 1
UCUCGUU------------------C*GUG*A-AGAU*A-GAAAGAG---------------------------------------A 1
UGGUAAUG-----------------A*U-U*G-G-AG*C-AACAAUAC--------------------------------------C 1
UGGUAAUG-----------------A*U-U*G-G-AG*C-AACAAUGC--------------------------------------C 1
UGGUGACG-----------------A*C-U*G-G-AG*C-AACAAUGC--------------------------------------C 1
UGGUGACG-----------------A*U-U*G-G-AG*C-AACAAUGC--------------------------------------C 1
UGGUGAUG-----------------A*U-U*G-A-AU*C-AACAACGC--------------------------------------C 1
AGUAACG------------------A*U-U*G-A-AG*C-AACAAUGC--------------------------------------U 1
CUUUAAAUAC---------------C*GA-*--UCAG*U-----GCGUA-------------------------------------G 1
GCCAUAAUAAU---------------*-AG*U-U-CC*G-----CUAGG-------------------------------------C 1
GGAAGUG------------------A*U-U*G-G-AG*C-AACAAAAU--------------------------------------C 1
UCAGAAG------------------A*U-U*A-G-AG*C-AAUUAAAG--------------------------------------G 1
UCGAGG-------------------A*U-U*G-A-AG*C-AACCGAGCA-------------------------------------G 1
UGGGAACU-----------------C*G-U*G-A-AG*C-AAAA-GAA--------------------------------------G 1
UUAAGUA------------------A*U-U*G-A-AG*C-AACAAAGA--------------------------------------G 1
UUAGAGU------------------A*U-U*G-A-AG*C-AAUAGUUA--------------------------------------G 1
GCGAACG------------------A*U-U*G-A-AG*C-AACGGUG---------------------------------------C 1
UUAAACCC------------------*-AG*U-ACGA*U-GAA--UUA--------------------------------------A 1
UUAUAA-------------------U*A-A*A-UAAG*C-AAAU-UUA--------------------------------------G 1
CCAAUA-------------------A*U-U*G-A-AG*C-AAUAAUG---------------------------------------G 1
CUAUAA-------------------U*A-A*--UGAG*C-AAAU-UUA--------------------------------------G 1
UGAAUUU------------------G*U-U*A-G-G-*--AGAUAAGU--------------------------------------G 1
CUUAAAAUC-----------------*-GU*C---AG*U--ACGGU----------------------------------------G 1
UCAUG--------------------C*G-U*G-AUAU*U-AAAUGA----------------------------------------G 1
-CGCA--------------------C*G-U*G-G-AU*A-AAGCGAGU--------------------------------------- 1
CACA---------------------C*G-U*G-G-AU*A-AAGCGAGU--------------------------------------- 1
Omitted sequenced and counts
UACAUAAUUCC--------------C*--U*U-----*--UAAGAAGAUUGAGGGUGU----------------------------A 10
CGGAAGACG-----------------*---*------*--ACGGACUAAUCACCCCUGUGUCAA----------------------G 3
UACAUAAUUCC--------------C*--U*G-U---*--AAAGAAGAUUGAGGGUGU----------------------------A 3
UACAUAAUUCC--------------C*--U*U-----*--UAAGAAGAUUGAGGGCGU----------------------------A 3
UACAUAAUUCC--------------C*--U*G-U---*--UAAGAAGAUUGAGGGUGU----------------------------A 2
UAUAUAAUUCC--------------C*--U*G-U---*--AAAGAAGAUUGAGGGUGU----------------------------A 2
UCAUUAAAUCC--------------A*--G*C-U-AC*G-GAUUGGUAG-------------------------------------A 2
UGAAUAGUG----------------A*--C*G-AAAG*C-AAAACUAA--------------------------------------A 2
GGUACCUCU----------------G*C--*--GAAG*C-AACGGGAA--------------------------------------C 2
UUAGAGC------------------A*U--*--U-AA*U-UAUUAAAAAGAUGAAGCUUAAAGGUUACGGAAAGUACCAAUAGUUAG 1
UUGUGCUCUCAAAAGGAGUUAUGUGA*U--*--AGAG*CUUACAGUUC-------------------------------------AA 1
CCAUAA-------------------G*A--*------*--CCACCGUGUAUUCGCCUUUAAUUAGACGCUAUG-------------G 1
CGGCUUUCGGCAGUGGAAGCUGC--C*--C*G-A-AU*A-GAAAAUGC--------------------------------------A 1
CACCUAAUCAAGACGCCCCCU----G*C--*C-A-AC*G-CCGGCCG-G-------------------------------------G 1
CGGAAGACGA----------------*---*------*--ACGGACUAAUCACCCCUGUGUCAA----------------------G 1
UACAUAAUUCC--------------C*--U*C-C-A-*--UAAGAAGAUUGAGGGUGU----------------------------A 1
UACAUAAUUCC--------------C*--U*U-C-A-*--UAAGAAUAUUGAGGGUGU----------------------------A 1
UACAUAAAUCC--------------C*--U*G-U---*--UAAGAAGAUUGAGGGCGU----------------------------A 1
UGCAUAAAUCC--------------C*--U*G-U---*--AAAGAAGAUUGAGGGUGU----------------------------A 1
UGCAUAAUUCC--------------C*--U*G-U---*--UAAGAAGA----------------------------UUGAGGGUGUA 1
ACGUAAUUCU---------------C*--U*G-U---*--UAAGAAGAUUGAGAGUG-----------------------------U 1
-ACAUAAAUCC--------------C*--U*U-----*--UAAGAAGAUUGAGGGUGU----------------------------- 1
CUCUAAAUCGAU--------------*--A*--GCAG*U-UUGUGCGUG-------------------------------------G 1
CUUGUUAAGACC-------------U*--U*G-G-AG*U-CAGGCUGA--------------------------------------G 1
UUUAUAAAUAC--------------A*--G*U-GUGG*C-UCUGGAUA--------------------------------------G 1
CGUAUAAUG----------------C*--C*A-AUAA*A-AAAAUUAA--------------------------------------G 1
GCGUAAAUCU---------------C*--U*U-UGCG*C-AAGAGUG---------------------------------------C 1
CUCAAUGC-----------------A*--U*G-A-AG*C-AAGCAAGGA-------------------------------------G 1
GGUAUUUUC----------------A*--C*G-A-AG*C-AACAAAAA--------------------------------------C 1
UCUUGAUGA----------------A*--A*C-UCUC*G--AGCGGAG--------------------------------------A 1
UGAAGAGCA----------------U*G--*--UAGC*A-AAUGCUAA--------------------------------------G 1
UGAAUAACA----------------G*C--*--UAGC*A-AAUGUUAA--------------------------------------G 1
UGAAUGUUG----------------A*--U*G-U-AG*C-AAUAACAA--------------------------------------A 1
CAAGAGA-------------------*--A*U-CCGG*C-ACCGCUUU--------------------------------------G 1
CCAAAUAA------------------*--G*UUACGG*C-GCUU-UG---------------------------------------G 1
CCAAAUAAGG----------------*---*--G-A-*A-ACCGCUUU-------------------------------------GG 1
CUGAAUGAUG----------------*--C*G----C*G-UAUCAAG---------------------------------------G 1
CCACAAGA------------------*--G*A-U-UC*G-----CUGU-------------------------------------GG 1
A------------------------C*G--*------*------------------------------------------------U 1
No Matches Found
View All Results for this LoopLoop 7 Internal loop
Column numbers: 114-117, 181-184 - View nucleotides in PDB file(s)
Scored sequences and counts
U--U*G--G 35
U--U*A--A 32
G--G*UGGC 21
A--U*A-UU 13
U--U*A--G 12
C--C*G--G 8
U--A*U--G 8
G--U*AAAC 7
A--U*A--U 7
U--C*G--G 6
G--U*AC-C 5
G--A*G--C 5
G--U*A--C 5
A--C*AGAU 4
C--G*CA-G 4
A--A*U--U 4
A--U*G--U 4
G--A*C--C 4
G--G*UGAC 3
A--U*G--A 3
C--U*A--U 3
U--A*U--A 3
C--C*AGAG 2
C--U*AAUG 2
G--A*UGAC 2
A--A*AG-U 2
U--C*GG-A 2
U--U*AA-G 2
C--A*U--G 2
C--G*C--G 2
C--G*G--G 2
C--U*A--G 2
G--U*G--U 2
U--C*G--A 2
UGCU*AGCA 1
C--U*AGUG 1
G--C*AGAC 1
G--G*ACAA 1
G--G*CGUC 1
G--G*UUAC 1
G--G*UUGC 1
U--G*CUAG 1
U--G*UGAA 1
A--A*A-GU 1
A--U*AA-U 1
C--C*G-AG 1
G--C*UA-C 1
G--G*CA-C 1
G-UG*A--A 1
U--A*AA-A 1
U--A*AC-U 1
U--A*UU-G 1
U--C*GG-G 1
U--U*AG-A 1
U--U*UA-G 1
A--A*G--C 1
A--A*U--C 1
A--A*U--G 1
A--G*A--U 1
A--G*U--U 1
C--A*C--G 1
C--G*A--U 1
C--G*C--U 1
C--U*A--A 1
G--C*G--C 1
G--G*C--C 1
G--U*A--A 1
G--U*G--C 1
U--A*A--G 1
U--C*A--G 1
U--G*A--G 1
U--G*C--G 1
U--U*C--G 1
U--U*G--A 1
U--U*G--U 1
U--U*U--G 1
Omitted sequenced and counts
U--A*---A 4
---G*CUA- 3
A--U*G--- 3
---G*CAGA 2
---A*CAGA 1
---U*ACAA 1
A---*AGUC 1
---A*UAA- 1
---C*AGA- 1
---C*GGU- 1
---G*C-AA 1
---G*CAA- 1
---G*UGA- 1
A---*-AGG 1
A---*-AUC 1
G---*-CAA 1
---G*CA-- 1
---U*G--- 1
--AA*---- 1
----*--U- 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_07039.3
Basepair signature:
|
84.73 | 15.46 | 3 | 1 |
Major groove platform |
| 2 |
Motif group IL_81831.1
Basepair signature:
|
62.21 | 14.65 | 3 | 1 |
Intercalated cWS |
| 3 |
Motif group IL_66635.5
Basepair signature:
|
61.45 | 14.64 | 3 | 1 |
Major groove intercalation |
| 4 |
Motif group IL_33761.2
Basepair signature:
|
61.45 | 8.29 | 4 | 1 |
|
| 5 |
Motif group IL_84476.1
Basepair signature:
|
59.54 | 0.24 | 4 | 2 |
Multiple bulged bases |
| 6 |
Motif group IL_42771.1
Basepair signature:
|
57.63 | 2.97 | 3 | 1 |
Multiple bulged bases |
| 7 |
Motif group IL_73452.2
Basepair signature:
|
54.20 | 12.86 | 4 | 1 |
|
| 8 |
Motif group IL_90729.1
Basepair signature:
|
45.04 | -0.76 | 2 | 1 |
Single stack bend |
| 9 |
Motif group IL_00225.13
Basepair signature:
|
42.75 | -8.39 | 1 | 1 |
Single bulged G |
| 10 |
Motif group IL_26793.1
Basepair signature:
|
41.22 | -6.68 | 2 | 1 |
Single stack bend |
Loop 8 Internal loop
Column numbers: 118-119, 178-180 - View nucleotides in PDB file(s)
Scored sequences and counts
AC*G-U 30
GC*G-C 30
AG*U-G 12
UU*A-A 12
GA*U-A 11
AC*A-C 9
AA*U-U 8
AC*A-U 7
CG*G-G 7
GU*A-U 7
AA*U-A 6
AG*G-A 6
AU*G-U 6
GC*G-U 6
GG*C-C 6
UU*A-G 6
UU*G-A 6
AG*C-U 5
GG*C-A 5
GU*A-C 5
GU*G-C 5
AU*A-U 4
CA*U-U 4
GA*G-C 4
UG*U-A 4
UG*U-G 4
AA*A-U 3
AA*G-A 3
AC*U-U 3
CC*U-A 3
UC*G-G 3
UG*C-A 3
UU*G-G 3
AA*A-A 2
AG*C-G 2
AG*G-U 2
AG*U-U 2
CU*A-C 2
CU*A-G 2
GA*U-C 2
GA*U-U 2
GC*A-C 2
GU*C-C 2
GU*G-U 2
UC*G-A 2
UG*A-G 2
AA*A-G 1
AA*G-G 1
AA*G-U 1
AA*U-G 1
AC*C-A 1
AG*C-A 1
AG*G-G 1
AU*A-G 1
AU*G-G 1
CG*U-A 1
CU*A-A 1
GA*A-C 1
GA*G-A 1
GC*A-A 1
GC*G-A 1
GG*G-A 1
GG*U-A 1
UA*U-A 1
UA*U-G 1
UG*A-A 1
UU*U-G 1
Omitted sequenced and counts
-G*U-A 1
-G*U-C 1
A-*A-U 1
AA*--U 1
UA*G-- 1
--*-GA 1
GU*--- 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_07039.3
Basepair signature:
|
77.74 | 7.46 | 3 | 1 |
Major groove platform |
| 2 |
Motif group IL_84476.1
Basepair signature:
|
68.20 | 9.66 | 3 | 2 |
Multiple bulged bases |
| 3 |
Motif group IL_42771.1
Basepair signature:
|
55.83 | 1.73 | 3 | 1 |
Multiple bulged bases |
| 4 |
Motif group IL_00225.13
Basepair signature:
|
47.70 | -10.16 | 2 | 1 |
Single bulged G |
| 5 |
Motif group IL_81831.1
Basepair signature:
|
46.64 | -0.13 | 3 | 1 |
Intercalated cWS |
| 6 |
Motif group IL_73452.2
Basepair signature:
|
43.82 | -0.86 | 3 | 1 |
|
| 7 |
Motif group IL_66635.5
Basepair signature:
|
42.76 | -4.88 | 2 | 1 |
Major groove intercalation |
| 8 |
Motif group IL_33761.2
Basepair signature:
|
42.76 | -8.67 | 3 | 1 |
|
| 9 |
Motif group IL_26793.1
Basepair signature:
|
38.87 | -8.20 | 2 | 1 |
Single stack bend |
| 10 |
Motif group IL_16386.4
Basepair signature:
|
38.87 | -11.25 | 4 | 1 |
|
Loop 9 Internal loop
Column numbers: 119-125, 171-178 - View nucleotides in PDB file(s)
Scored sequences and counts
CU----A*CG-----G 15
AA----U*UG-----U 12
CGC---U*AGA-UAAG 10
CG----C*GGA-UAAG 10
CU----A*CA-----G 9
CA----U*AAU-GUAA 7
UA----A*UU-----A 7
GG----C*GC-----U 6
GG----C*GU-----G 6
GG----U*AU-----U 6
GA----A*UAU---AG 5
GC----U*GU-----C 5
AA----G*UG-----U 4
AG----C*AG-----G 4
AU----G*UG-----U 4
GG----U*AC-----U 4
UU----A*UG-----G 4
CAC---U*AGA-UAAG 3
CGC---U*GGA-UAAG 3
CG----U*GAC-GUAA 3
AG----C*GUG----A 3
AGA---G*CG-----U 3
AG----G*CU-----G 3
CG----A*UU-----U 3
CU----U*AG-----G 3
UA----U*UU-----A 3
UG----C*GA-----A 3
CGC----*-GA-UAAG 2
GA----U*UGU----C 2
GUA---U*AA-----C 2
GUA---U*AA-----U 2
UC----U*GGC----A 2
UG----G*CAU----A 2
AA----A*UU-----U 2
AC----G*UU-----U 2
CA----C*GG-----U 2
CG----G*CU-----G 2
GA----U*UG-----A 2
GG----C*GC-----C 2
GU----A*UA-----U 2
GU----U*AG-----C 2
GU----U*AG-----G 2
UA----G*CG-----G 2
UC----A*AG-----G 2
UC----G*UU-----C 2
UG----A*UU-----A 2
UG----G*CU-----G 2
UG----U*UU-----A 2
U-----U*AU-----A 2
GUA-CAC*GAA---AC 1
UGU---U*GGA-UAAG 1
AUAUUAU*AU-----A 1
CA----C*GGA-UAAG 1
CC----U*AAG-GCAA 1
CC----U*AAG-GUAA 1
CG----U*AAC-GUAA 1
CU----G*AGG-UAAC 1
CU--UGA*ACAA---G 1
UC----A*UGG-GCAA 1
UC----C*AGG-UGAA 1
UUC---C*GGU-GAA- 1
CG----G*AAG-UA-A 1
CC----U*AGA---AG 1
CG----A*GGU---AG 1
CG----C*GUA---AG 1
CUA---A*UG----AG 1
GA----A*UAC---AG 1
GA----C*GAU---AC 1
GA----G*UCA---AC 1
GG----A*UAU---AG 1
GUA---G*CG----GC 1
UC----C*ACU---GA 1
UU----C*ACU---GA 1
UUA---A*UG----GA 1
AA----G*UAA----G 1
ACA---C*-A----GU 1
ACG---G*UC-----G 1
AG----A*UUC----U 1
CAA---A*UA-----G 1
CAA---U*AC-----G 1
CAC---U*AA-----G 1
GAU---A*UU-----U 1
GG----U*UU----CU 1
UAA---U*AC-----G 1
-G----G*CU----AA 1
AA----A*UU-----A 1
AA----C*CA-----U 1
AA----C*GG-----U 1
AC----A*UG-----G 1
AG----A*UA-----G 1
AG----C*GA-----U 1
AG----G*CG-----U 1
AG----U*AA-----U 1
AU----A*AA-----A 1
AU----G*AA-----A 1
AU----U*AG-----U 1
AU----U*GG-----U 1
CA----A*CG-----A 1
CA----A*UA-----G 1
CA----A*UG-----A 1
CA----C*GA-----A 1
CC----G*UU-----G 1
CG----A*GA-----A 1
CG----C*GG-----A 1
CG----U*CA-----G 1
CU----A*UA-----G 1
CU----C*GA-----G 1
CU----U*AA-----G 1
GA----A*AA-----C 1
GA----A*CA-----C 1
GA----C*AA-----C 1
GA----C*GU-----U 1
GA----G*CU-----U 1
GA----U*AG-----A 1
GA----U*AU-----U 1
GC----A*GA-----G 1
GG----A*UU-----G 1
GG----U*GC-----U 1
GU----C*GG-----C 1
GU----G*UG-----C 1
UA----A*AA-----A 1
UA----A*CA-----A 1
UA----C*GA-----A 1
UA----C*GG-----G 1
UA----G*AU-----A 1
UA----G*UG-----G 1
UA----U*AU-----A 1
UC----G*CG-----G 1
UC----U*AG-----A 1
UG----A*AA-----G 1
UG----A*CU-----G 1
UG----A*UA-----G 1
UG----C*GU-----A 1
UG----U*AA-----U 1
UG----U*GU-----A 1
UU----A*UA-----A 1
UU----A*UG-----A 1
UU----C*AU-----G 1
UU----C*GU-----G 1
UU----G*UA-----G 1
UU----G*UU-----G 1
-GU---U*GU------ 1
AA----U*UA------ 1
U-----G*CA-----G 1
UCA----*-C-----A 1
CA-----*-G-----U 1
UA-----*-G-----A 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_14688.1
Basepair signature:
|
62.07 | -33.65 | 4 | 1 |
Isolated non-canonical cWW pair |
| 2 |
Motif group IL_08770.1
Basepair signature:
|
61.72 | -25.35 | 4 | 1 |
|
| 3 |
Motif group IL_31737.3
Basepair signature:
|
59.66 | -40.80 | 3 | 1 |
Stack and bulge |
| 4 |
Motif group IL_42997.3
Basepair signature:
|
58.28 | -49.32 | 3 | 1 |
Isolated cWS basepair |
| 5 |
Motif group IL_07785.1
Basepair signature:
|
57.24 | -44.86 | 3 | 1 |
Isolated non-canonical cWW pair |
| 6 |
Motif group IL_44465.1
Basepair signature:
|
54.83 | -57.32 | 3 | 1 |
Isolated non-canonical cWW contact |
| 7 |
Motif group IL_87907.2
Basepair signature:
|
47.24 | -67.98 | 2 | 1 |
Isolated non-canonical cWW pair |
| 8 |
Motif group IL_42771.1
Basepair signature:
|
42.07 | -1671.65 | 4 | 2 |
Multiple bulged bases |
| 9 |
Motif group IL_57744.1
Basepair signature:
|
41.03 | -47.06 | 3 | 1 |
Isolated non-canonical cWW pair |
| 10 |
Motif group IL_10167.6
Basepair signature:
|
33.45 | -79.50 | 2 | 1 |
Isolated cWH basepair |
Loop 10 Internal loop
Column numbers: 125-128, 169-171 - View nucleotides in PDB file(s)
Scored sequences and counts
U--U*A-A 25
A--A*A-C 24
U--U*A-U 19
C--U*A-G 18
A--C*G-U 17
G--U*A-U 10
C-UC*G-G 9
A--U*A-U 9
U--C*G-A 9
U--A*U-A 7
U--U*A-G 7
U--U*G-A 6
G--C*G-C 5
G--U*A-C 5
U--C*G-G 5
A--A*U-U 4
C--C*G-G 4
C--U*G-G 4
G--A*U-C 4
G--C*G-U 4
G--C*U-C 4
U--A*A-A 4
CUGA*A-A 3
A--G*C-U 3
A--U*A-A 3
A--U*G-U 3
C--C*U-G 3
U--A*G-A 3
G-UU*AAU 2
U-GU*A-A 2
A--C*G-C 2
C--C*G-A 2
G--A*G-A 2
G--U*G-U 2
U--U*U-U 2
C-CU*AGG 1
G-UC*GAU 1
A-CA*A-U 1
U-GA*U-A 1
A--A*A-A 1
A--A*A-U 1
A--A*C-C 1
A--A*U-A 1
A--C*G-G 1
A--C*U-U 1
A--G*A-A 1
A--G*C-G 1
A--U*A-G 1
C--A*A-A 1
C--A*A-C 1
C--A*A-G 1
C--A*U-G 1
C--G*C-A 1
C--G*C-G 1
C--U*C-A 1
C--U*G-A 1
G--A*C-C 1
G--A*U-U 1
G--U*A-A 1
G--U*C-A 1
G--U*G-C 1
U--A*G-U 1
U--A*U-G 1
U--C*G-U 1
U--C*U-A 1
U--C*U-C 1
Omitted sequenced and counts
U-CA*--G 5
C---*--G 3
A-CA*--U 2
---G*U-- 2
---U*A-- 2
A-AA*--U 1
C-AC*--G 1
C-AG*--G 1
U-AA*--A 1
A---*A-U 1
A--A*--A 1
A--A*--C 1
C--G*--G 1
C-UA*--- 1
---C*G-- 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_07039.3
Basepair signature:
|
76.69 | 11.69 | 3 | 1 |
Major groove platform |
| 2 |
Motif group IL_84476.1
Basepair signature:
|
69.17 | 9.69 | 3 | 2 |
Multiple bulged bases |
| 3 |
Motif group IL_42771.1
Basepair signature:
|
63.91 | 6.11 | 3 | 1 |
Multiple bulged bases |
| 4 |
Motif group IL_00225.13
Basepair signature:
|
58.65 | -6.56 | 2 | 1 |
Single bulged G |
| 5 |
Motif group IL_66635.5
Basepair signature:
|
54.14 | -0.48 | 3 | 1 |
Major groove intercalation |
| 6 |
Motif group IL_33761.2
Basepair signature:
|
53.01 | -3.50 | 3 | 1 |
|
| 7 |
Motif group IL_81831.1
Basepair signature:
|
52.26 | 6.10 | 4 | 1 |
Intercalated cWS |
| 8 |
Motif group IL_73452.2
Basepair signature:
|
48.87 | 5.54 | 3 | 1 |
|
| 9 |
Motif group IL_26793.1
Basepair signature:
|
46.99 | -2.92 | 2 | 1 |
Single stack bend |
| 10 |
Motif group IL_90729.1
Basepair signature:
|
46.99 | -6.23 | 2 | 1 |
Single stack bend |
Loop 11 Internal loop
Column numbers: 129-131, 166-168 - View nucleotides in PDB file(s)
Scored sequences and counts
U-A*U-A 35
G-A*U-U 24
U-U*A-A 20
A-U*A-U 17
U-C*G-A 16
A-A*U-U 15
G-C*G-C 8
U-U*G-A 8
C-U*U-U 7
C-G*G-G 6
G-A*U-C 6
U-G*U-A 6
C-C*G-G 5
G-U*A-C 5
G-G*U-C 4
G-U*G-G 4
U-G*C-A 4
GAA*UUU 3
GUC*GAU 3
UCC*G-A 3
A-C*G-U 3
A-G*C-U 3
A-U*A-A 3
U-A*U-G 3
U-A*U-U 3
ACC*GGC 2
A-G*U-U 2
A-U*A-C 2
G-C*G-U 2
G-U*A-U 2
G-U*G-C 2
U-G*G-A 2
U-U*A-G 2
AAA*UCU 1
ACU*GGC 1
CGU*ACA 1
GGU*ACU 1
UCU*AGA 1
ACG*G-G 1
CGG*C-A 1
A-A*A-A 1
A-A*U-A 1
A-C*G-C 1
A-G*C-G 1
A-U*G-U 1
C-A*C-A 1
C-A*U-C 1
C-C*G-A 1
C-G*C-G 1
C-G*U-G 1
C-U*A-G 1
G-A*C-C 1
G-A*U-A 1
G-A*U-G 1
G-C*A-C 1
U-C*G-U 1
U-G*U-G 1
U-U*C-U 1
U-U*G-G 1
Omitted sequenced and counts
--A*U-- 13
GCU*A-- 6
A--*A-A 3
AAC*G-- 1
AGA*U-- 1
GAA*--C 1
GAA*G-- 1
GGC*G-- 1
GUU*A-- 1
A--*G-U 1
A-A*--G 1
C-G*--G 1
U--*A-A 1
--C*G-- 1
---*--- 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_07039.3
Basepair signature:
|
86.33 | 12.24 | 2 | 1 |
Major groove platform |
| 2 |
Motif group IL_42771.1
Basepair signature:
|
80.86 | 12.00 | 3 | 1 |
Multiple bulged bases |
| 3 |
Motif group IL_84476.1
Basepair signature:
|
79.69 | 10.17 | 3 | 2 |
Multiple bulged bases |
| 4 |
Motif group IL_81831.1
Basepair signature:
|
72.27 | 7.03 | 3 | 1 |
Intercalated cWS |
| 5 |
Motif group IL_00225.13
Basepair signature:
|
69.53 | -4.78 | 1 | 1 |
Single bulged G |
| 6 |
Motif group IL_73452.2
Basepair signature:
|
59.38 | 5.81 | 4 | 1 |
|
| 7 |
Motif group IL_66635.5
Basepair signature:
|
58.20 | -0.26 | 3 | 1 |
Major groove intercalation |
| 8 |
Motif group IL_33761.2
Basepair signature:
|
58.20 | -4.54 | 4 | 1 |
|
| 9 |
Motif group IL_26793.1
Basepair signature:
|
56.25 | -0.09 | 2 | 1 |
Single stack bend |
| 10 |
Motif group IL_90729.1
Basepair signature:
|
56.25 | -4.20 | 2 | 1 |
Single stack bend |
Loop 12 Internal loop
Column numbers: 132-135, 162-165 - View nucleotides in PDB file(s)
Scored sequences and counts
U--A*U--A 28
U--U*G--A 28
G--A*U--C 25
U--G*C--A 19
C--G*C--G 15
A--A*U--U 13
U--G*U--A 12
U--U*A--A 12
A--U*U--U 11
A--G*U--U 9
AAAC*G--U 6
C-UG*C--G 6
A--U*G--U 6
C--A*U--G 6
C--G*U--G 6
--UG*CA-- 5
CAGG*U--G 4
A--U*A--U 4
G--C*G--C 4
CAGC*GCUG 3
A--C*G--U 3
C--G*U--U 3
G--C*G--U 3
G--U*U--C 3
U--C*G--A 3
AGUG*UACU 2
AUGA*UA-U 2
U-UG*CA-G 2
C--U*A--G 2
G--C*G--A 2
G--G*U--U 2
G--U*A--C 2
G--U*A--U 2
U--G*C--G 2
CCAC*GCGG 1
CGUG*UACG 1
UAUA*UAUA 1
AAUU*GU-U 1
AUGA*U-AU 1
UUUA*UA-A 1
-CAG*CA-A 1
A-AU*GG-U 1
A-UC*GA-U 1
AAAG*C--U 1
AAGC*GC-- 1
CAGA*-U-G 1
CAUU*U--G 1
GUUG*C--U 1
U-UG*CA-A 1
U-GA*U--A 1
U-UA*U--G 1
--GC*GU-- 1
--UG*UU-- 1
A--C*U--U 1
A--U*A--A 1
C--C*G--G 1
C--U*U--G 1
G--A*U--U 1
G--G*C--C 1
G--G*U--C 1
U--A*A--A 1
U--A*U--G 1
U--U*G--G 1
Omitted sequenced and counts
A--G*---U 2
A--U*---U 1
C--A*---G 1
U--A*---G 1
----*---- 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_84476.1
Basepair signature:
|
83.45 | 14.55 | 3 | 2 |
Multiple bulged bases |
| 2 |
Motif group IL_42771.1
Basepair signature:
|
83.10 | 9.08 | 3 | 1 |
Multiple bulged bases |
| 3 |
Motif group IL_07039.3
Basepair signature:
|
82.75 | 6.07 | 2 | 1 |
Major groove platform |
| 4 |
Motif group IL_81831.1
Basepair signature:
|
70.07 | 10.26 | 3 | 1 |
Intercalated cWS |
| 5 |
Motif group IL_73452.2
Basepair signature:
|
60.56 | 7.52 | 3 | 1 |
|
| 6 |
Motif group IL_66635.5
Basepair signature:
|
57.04 | 0.39 | 3 | 1 |
Major groove intercalation |
| 7 |
Motif group IL_33761.2
Basepair signature:
|
57.04 | -6.07 | 3 | 1 |
|
| 8 |
Motif group IL_90729.1
Basepair signature:
|
56.34 | -5.31 | 2 | 1 |
Single stack bend |
| 9 |
Motif group IL_00225.13
Basepair signature:
|
54.93 | -16.18 | 2 | 1 |
Single bulged G |
| 10 |
Motif group IL_26793.1
Basepair signature:
|
53.17 | -5.99 | 2 | 1 |
Single stack bend |
Loop 13 Hairpin loop
Column numbers: 138-159 - View nucleotides in PDB file(s)
Scored sequences and counts
G-------------GAUA---C 196
A-------------GAUA---U 43
C-------------GAUA---G 14
U-------------GAUA---G 9
A-------------GAUA---A 5
A-------------GAGA---U 4
G-------------GAUG---C 4
A-----------CAGAUA---A 2
G-----------G-GAUA--CC 2
GGAAAAGCGCCGGGGAUA---C 1
-------CGUCCGUGUCU---- 1
G-----------U-GAUA--GC 1
--------------AGAGCGG- 1
C-------------GAUAU--G 1
G-------------GAUUG--C 1
A-------------AAUA---U 1
C-------------GAUG---G 1
G-------------AAUA---C 1
G-------------GAUA---U 1
U-------------GCGA---A 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_50006.2
Basepair signature:
|
96.90 | 21.98 | 3 | 1 |
|
| 2 |
Motif group HL_53890.2
Basepair signature:
|
96.90 | 12.60 | 3 | 1 |
|
| 3 |
Motif group HL_93535.1
Basepair signature:
|
96.90 | 10.39 | 3 | 1 |
|
| 4 |
Motif group HL_80922.2
Basepair signature:
|
96.90 | -9.04 | 3 | 1 |
|
| 5 |
Motif group HL_62934.1
Basepair signature:
|
96.55 | 20.34 | 3 | 1 |
|
| 6 |
Motif group HL_65794.5
Basepair signature:
|
96.55 | 13.65 | 1 | 1 |
Pseudoknot geometry |
| 7 |
Motif group HL_75660.5
Basepair signature:
|
96.55 | 2.22 | 1 | 1 |
|
| 8 |
Motif group HL_52953.3
Basepair signature:
|
96.55 | -13.64 | 1 | 1 |
|
| 9 |
Motif group HL_66103.1
Basepair signature:
|
96.21 | -6.56 | 3 | 1 |
|
| 10 |
Motif group HL_04783.2
Basepair signature:
|
95.17 | 14.29 | 1 | 1 |
|
Loop 14 Internal loop
Column numbers: 190-192, 247-249 - View nucleotides in PDB file(s)
Scored sequences and counts
U-C*G-A 46
C-U*A-G 35
U-U*A-A 26
U-G*C-A 20
U-A*U-A 19
C-C*G-G 17
G-C*G-C 13
A-C*G-U 11
C-A*U-G 6
C-U*G-G 5
G-A*U-C 5
U-G*U-G 5
G-G*C-C 4
G-U*A-C 4
U-G*C-G 4
GAG*CAG 3
A-U*A-U 3
G-U*G-C 3
C-A*UAG 2
C-G*UAG 2
A-A*U-U 2
C-G*C-G 2
C-G*U-G 2
U-A*U-G 2
U-C*A-C 2
U-C*G-G 2
U-G*C-U 2
U-U*A-G 2
C-A*UCG 1
C-G*CAG 1
UCC*G-A 1
A-G*C-U 1
A-G*U-U 1
C-A*A-G 1
C-A*U-A 1
C-U*A-A 1
G-A*A-C 1
G-C*G-A 1
G-U*C-C 1
U-C*G-U 1
U-C*U-A 1
U-G*U-A 1
U-U*G-A 1
U-U*G-C 1
U-U*G-G 1
Omitted sequenced and counts
---*--- 9
C--*--G 3
C--*UAG 2
C-U*--G 2
C--*UUG 1
--A*AG- 1
C-G*--G 1
U-G*--G 1
--U*A-- 1
A--*--U 1
G--*--U 1
U--*--A 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_84476.1
Basepair signature:
|
93.98 | 25.64 | 3 | 2 |
Multiple bulged bases |
| 2 |
Motif group IL_07039.3
Basepair signature:
|
93.98 | 16.06 | 2 | 1 |
Major groove platform |
| 3 |
Motif group IL_42771.1
Basepair signature:
|
92.11 | 21.64 | 3 | 1 |
Multiple bulged bases |
| 4 |
Motif group IL_81831.1
Basepair signature:
|
90.23 | 17.73 | 3 | 1 |
Intercalated cWS |
| 5 |
Motif group IL_73452.2
Basepair signature:
|
88.72 | 17.06 | 3 | 1 |
|
| 6 |
Motif group IL_00225.13
Basepair signature:
|
87.59 | 2.68 | 1 | 1 |
Single bulged G |
| 7 |
Motif group IL_33761.2
Basepair signature:
|
85.34 | 5.65 | 3 | 1 |
|
| 8 |
Motif group IL_66635.5
Basepair signature:
|
84.21 | 13.02 | 2 | 1 |
Major groove intercalation |
| 9 |
Motif group IL_31737.3
Basepair signature:
|
83.46 | 1.49 | 2 | 1 |
Stack and bulge |
| 10 |
Motif group IL_26793.1
Basepair signature:
|
82.71 | 11.39 | 2 | 1 |
Single stack bend |
Loop 15 Internal loop
Column numbers: 193-195, 244-246 - View nucleotides in PDB file(s)
Scored sequences and counts
A-U*A-U 36
C-U*A-G 24
G-A*U-A 15
U-U*A-A 12
A-C*G-U 10
G-U*A-U 9
GAA*U-A 8
C-C*G-G 8
A-A*U-U 7
U-G*C-G 6
A-C*U-U 5
U-U*G-A 5
A-U*A-C 4
G-C*G-C 4
G-U*A-C 4
U-A*U-A 4
C-U*G-G 3
G-G*C-U 3
U-C*G-A 3
AAA*UUU 2
GGG*CUU 2
AAA*U-A 2
A-A*A-U 2
A-A*C-U 2
A-A*U-C 2
A-G*U-U 2
A-U*G-U 2
C-A*A-G 2
C-A*U-G 2
C-G*A-G 2
G-A*U-U 2
G-G*C-C 2
U-G*A-A 2
U-G*C-A 2
AUG*CAU 1
GGA*UUU 1
-UC*GAG 1
A-C*GUU 1
AAC*A-U 1
CAG*-AG 1
CGA*A-G 1
GAU*A-U 1
UGC*G-C 1
-AG*U-C 1
-UU*AA- 1
A-G*C-C 1
A-U*U-U 1
AA-*A-U 1
C-A*C-G 1
C-G*C-G 1
C-U*A-U 1
C-U*U-G 1
CA-*G-G 1
G-A*C-G 1
G-A*U-C 1
G-C*G-U 1
G-G*A-C 1
G-G*U-U 1
G-U*G-C 1
U-A*C-C 1
U-A*U-U 1
U-C*G-C 1
U-G*A-G 1
U-G*U-A 1
U-U*A-G 1
UA-*-CA 1
Omitted sequenced and counts
---*--- 17
--U*A-- 8
G--*U-A 7
--C*G-- 4
A-G*--U 2
C--*--G 2
G--*UAC 1
UUA*U-- 1
--G*C-G 1
--G*C-U 1
-UA*U-- 1
A-U*U-- 1
AG-*--U 1
C--*A-G 1
CG-*--G 1
U--*U-A 1
U--*U-G 1
UU-*--A 1
--C*U-- 1
A--*--U 1
U--*--A 1
U--*--G 1
U--*U-- 1
--G*--- 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_07039.3
Basepair signature:
|
88.79 | 14.86 | 2 | 1 |
Major groove platform |
| 2 |
Motif group IL_42771.1
Basepair signature:
|
81.03 | 16.79 | 3 | 1 |
Multiple bulged bases |
| 3 |
Motif group IL_84476.1
Basepair signature:
|
79.74 | 13.63 | 3 | 2 |
Multiple bulged bases |
| 4 |
Motif group IL_81831.1
Basepair signature:
|
65.52 | 9.92 | 4 | 1 |
Intercalated cWS |
| 5 |
Motif group IL_73452.2
Basepair signature:
|
63.36 | 9.47 | 4 | 1 |
|
| 6 |
Motif group IL_33761.2
Basepair signature:
|
62.93 | 0.65 | 4 | 1 |
|
| 7 |
Motif group IL_66635.5
Basepair signature:
|
62.50 | 5.70 | 3 | 1 |
Major groove intercalation |
| 8 |
Motif group IL_00225.13
Basepair signature:
|
62.50 | -3.68 | 1 | 1 |
Single bulged G |
| 9 |
Motif group IL_26793.1
Basepair signature:
|
59.91 | 4.96 | 2 | 1 |
Single stack bend |
| 10 |
Motif group IL_90729.1
Basepair signature:
|
59.91 | 1.33 | 2 | 1 |
Single stack bend |
Loop 16 Internal loop
Column numbers: 195-199, 242-244 - View nucleotides in PDB file(s)
Scored sequences and counts
U---U*A-A 40
U---A*U-A 20
U-AA-*A-A 11
C---U*A-G 11
U---U*U-A 9
A---A*U-U 8
A---U*A-U 6
C---A*A-G 6
C---U*A-U 6
U---G*U-G 6
G---U*G-C 5
U---C*G-A 5
U--AC*G-A 4
C---C*G-G 4
G---C*G-C 4
G---G*C-C 4
A---A*U-A 3
A---A*U-C 3
A---G*C-U 3
A---G*U-U 3
C---A*U-G 3
U---G*U-A 3
U---U*A-G 3
U---U*G-A 3
G-GAA*U-A 2
G-A-A*U-A 2
A---A*G-A 2
A---C*G-U 2
C---G*C-G 2
C---U*G-G 2
C-U--*-AG 2
G---U*A-C 2
G---U*A-U 2
C-AAA*GAG 1
A-AAC*G-C 1
G--AC*GCC 1
G-AAA*U-A 1
G-AAA*U-C 1
G-AAC*G-C 1
U-A-A*UAA 1
U-GAU*A-A 1
U-GUG*C-A 1
--AAA*U-A 1
--UAC*G-U 1
--UAC*GA- 1
--UAG*C-U 1
C-AA-*A-G 1
G--AG*U-C 1
G-U-A*G-C 1
U-GA-*A-A 1
A---G*C-C 1
A---U*C-U 1
A---U*G-U 1
C---G*U-G 1
C---U*U-G 1
G---C*G-U 1
G---G*U-U 1
G---U*G-U 1
G-A--*G-A 1
U---C*G-U 1
U---G*C-A 1
U---G*C-G 1
U---U*U-U 1
Omitted sequenced and counts
A----*--U 25
-----*--- 19
----C*G-U 7
----A*U-- 2
G-CUG*U-- 1
G-UAA*U-- 1
G-UGA*U-- 1
----A*U-A 1
----G*U-G 1
----G*U-U 1
----U*G-U 1
---AA*U-- 1
-AUA-*--- 1
C----*U-A 1
G---A*A-- 1
U----*A-G 1
----U*A-- 1
U----*--A 1
U----*--U 1
-----*A-- 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_07039.3
Basepair signature:
|
89.59 | 16.62 | 2 | 1 |
Major groove platform |
| 2 |
Motif group IL_42771.1
Basepair signature:
|
79.19 | 16.62 | 3 | 1 |
Multiple bulged bases |
| 3 |
Motif group IL_84476.1
Basepair signature:
|
76.92 | 13.67 | 3 | 2 |
Multiple bulged bases |
| 4 |
Motif group IL_81831.1
Basepair signature:
|
72.85 | 17.84 | 3 | 1 |
Intercalated cWS |
| 5 |
Motif group IL_73452.2
Basepair signature:
|
71.49 | 15.25 | 4 | 1 |
|
| 6 |
Motif group IL_33761.2
Basepair signature:
|
70.14 | 4.64 | 4 | 1 |
|
| 7 |
Motif group IL_66635.5
Basepair signature:
|
69.23 | 9.33 | 3 | 1 |
Major groove intercalation |
| 8 |
Motif group IL_90729.1
Basepair signature:
|
65.16 | 2.62 | 2 | 1 |
Single stack bend |
| 9 |
Motif group IL_26793.1
Basepair signature:
|
64.25 | 6.56 | 2 | 1 |
Single stack bend |
| 10 |
Motif group IL_00225.13
Basepair signature:
|
57.47 | -8.57 | 1 | 1 |
Single bulged G |
Loop 17 Internal loop
Column numbers: 201-202, 238-240 - View nucleotides in PDB file(s)
Scored sequences and counts
AU*A-U 29
GU*A-C 27
GU*A-U 22
UC*G-A 16
UU*A-A 15
UG*U-G 14
GA*U-C 10
GG*U-C 8
AC*G-G 7
AC*G-U 7
AU*U-G 7
GC*G-U 7
UG*C-A 7
AA*U-U 6
AG*U-G 6
GA*U-U 5
UG*C-G 5
AU*G-U 4
CG*C-A 4
CU*A-G 4
UA*U-A 4
CG*C-G 3
GC*G-C 3
GG*C-U 3
AA*G-A 2
AG*C-U 2
UA*U-G 2
UC*G-G 2
UC*G-U 2
UU*A-G 2
GU*GAU 1
AA*G-C 1
AC*A-U 1
AU*A-C 1
CA*U-G 1
CC*G-G 1
CU*U-U 1
GA*C-C 1
GG*C-C 1
GG*U-U 1
UA*C-A 1
UG*C-C 1
UG*U-A 1
UU*G-G 1
UU*U-A 1
UU*U-U 1
Omitted sequenced and counts
--*--- 26
UA*U-- 3
--*A-G 3
CG*C-- 2
--*U-G 2
AG*C-- 1
GU*--C 1
--*A-- 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_07039.3
Basepair signature:
|
94.42 | 14.63 | 2 | 1 |
Major groove platform |
| 2 |
Motif group IL_84476.1
Basepair signature:
|
85.66 | 17.73 | 3 | 2 |
Multiple bulged bases |
| 3 |
Motif group IL_42771.1
Basepair signature:
|
80.88 | 10.89 | 3 | 1 |
Multiple bulged bases |
| 4 |
Motif group IL_00225.13
Basepair signature:
|
73.31 | -0.81 | 1 | 1 |
Single bulged G |
| 5 |
Motif group IL_81831.1
Basepair signature:
|
62.55 | 8.51 | 4 | 1 |
Intercalated cWS |
| 6 |
Motif group IL_73452.2
Basepair signature:
|
60.16 | 7.31 | 3 | 1 |
|
| 7 |
Motif group IL_66635.5
Basepair signature:
|
58.96 | 3.70 | 2 | 1 |
Major groove intercalation |
| 8 |
Motif group IL_33761.2
Basepair signature:
|
58.96 | -1.93 | 3 | 1 |
|
| 9 |
Motif group IL_26793.1
Basepair signature:
|
54.58 | 0.85 | 2 | 1 |
Single stack bend |
| 10 |
Motif group IL_90729.1
Basepair signature:
|
54.58 | -2.75 | 2 | 1 |
Single stack bend |
Loop 18 Internal loop
Column numbers: 202-204, 237-238 - View nucleotides in PDB file(s)
Scored sequences and counts
U-A*UA 60
C-A*UG 30
G-A*UU 26
U-G*CA 21
A-A*UU 19
G-A*UC 17
U-C*GA 8
A-G*CU 6
C-C*GG 6
U-A*UU 6
U-U*GA 6
C-U*GG 5
G-G*UC 5
U-C*GG 5
A-U*AU 3
A-U*GU 3
U-C*GU 3
A-G*CG 2
C-G*CG 2
G-G*CC 2
G-G*CU 2
U-U*AA 2
CUA*UG 1
UAG*CA 1
A-A*UC 1
A-A*UG 1
A-G*CC 1
C-A*CG 1
C-C*GA 1
G-C*GC 1
G-U*AC 1
U-G*CG 1
U-G*CU 1
Omitted sequenced and counts
---*-- 26
G--*-C 3
--G*UA 2
G--*-U 2
U--*-A 2
--G*CU 1
U-A*U- 1
---*AA 1
---*AU 1
---*-A 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_07039.3
Basepair signature:
|
100.00 | 16.76 | 2 | 1 |
Major groove platform |
| 2 |
Motif group IL_84476.1
Basepair signature:
|
97.20 | 25.49 | 4 | 2 |
Multiple bulged bases |
| 3 |
Motif group IL_42771.1
Basepair signature:
|
94.00 | 19.87 | 2 | 1 |
Multiple bulged bases |
| 4 |
Motif group IL_81831.1
Basepair signature:
|
87.60 | 16.57 | 2 | 1 |
Intercalated cWS |
| 5 |
Motif group IL_00225.13
Basepair signature:
|
86.00 | 5.81 | 1 | 1 |
Single bulged G |
| 6 |
Motif group IL_73452.2
Basepair signature:
|
75.20 | 15.64 | 3 | 1 |
|
| 7 |
Motif group IL_66635.5
Basepair signature:
|
74.80 | 9.58 | 3 | 1 |
Major groove intercalation |
| 8 |
Motif group IL_33761.2
Basepair signature:
|
74.80 | 3.20 | 4 | 1 |
|
| 9 |
Motif group IL_26793.1
Basepair signature:
|
72.00 | 9.02 | 2 | 1 |
Single stack bend |
| 10 |
Motif group IL_90729.1
Basepair signature:
|
72.00 | 5.90 | 2 | 1 |
Single stack bend |
Loop 19 Hairpin loop
Column numbers: 204-237 - View nucleotides in PDB file(s)
Scored sequences and counts
A-------------GUAA---------------U 61
A-------------GUGA---------------U 56
C-------------GUGA---------------G 17
G-------------GCGA---------------C 16
A-------------GCGA---------------U 14
A-------------GCAA---------------U 13
G-------------GUAA---------------C 10
U-------------GUGA---------------G 9
A-------------GAGA---------------U 8
G-------------GUGA---------------C 8
AUA-----------UUGA-----------AGUGU 5
C-------------GCGA---------------G 4
--------------GUAGUA-------------- 3
G-------------GCAA---------------C 3
G-------------GCAA---------------U 3
U-------------GUGA---------------A 3
--------------AGAA---------------- 3
--------------GAAA---------------- 3
--------------UUCU---------------- 3
C-------------GAAA---------------G 2
G-------------GCGA---------------U 2
G-------------GUAA---------------U 2
--------------GUAA---------------- 2
--------------GUGA---------------- 2
--------------UCCG---------------- 2
UAUAAUUGAUAAGUCCACU-ACUUAUUAAGAA-G 1
U--AUAAUGACUGGGUAAG-UCACCCGUAAGAAG 1
U---------GUAUAAAA--GUACUCAGUGAAGA 1
---GAUGC-AG---GUAA-----CUGGCAUCUAA 1
AUA-AGGC------UAU---------GCCGAAGU 1
AUAUA---------UCGA-------------AGU 1
A-------------UUAAG--------------U 1
A-------------AUAA---------------U 1
A-------------GAGA---------------C 1
A-------------UCGC---------------U 1
C-------------GAGA---------------G 1
G-------------AUGA---------------C 1
G-------------GAAA---------------C 1
G-------------GAGA---------------C 1
U-------------GAAA---------------A 1
U-------------GAAA---------------G 1
U-------------GCGA---------------A 1
U-------------GCGA---------------G 1
U-------------GGAA---------------G 1
--------------AGACA--------------- 1
--------------AGAUA--------------- 1
--------------GUGA---------------A 1
--------------GUGAC--------------- 1
--------------UAUAU--------------- 1
--------------CAGA---------------- 1
--------------GCGA---------------- 1
--------------UUAU---------------- 1
--------------GAA----------------- 1
--------------UUU----------------- 1
--------------GU------------------ 1
Omitted sequenced and counts
---------------------------------- 6
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_37824.7
Basepair signature:
|
87.68 | -127.73 | 0 | 0 |
GNRA |
| 2 |
Motif group HL_53890.2
Basepair signature:
|
87.68 | -192.24 | 2 | 1 |
|
| 3 |
Motif group HL_04783.2
Basepair signature:
|
87.32 | -163.35 | 2 | 1 |
|
| 4 |
Motif group HL_52953.3
Basepair signature:
|
87.32 | -664.32 | 2 | 1 |
|
| 5 |
Motif group HL_75660.5
Basepair signature:
|
86.97 | -501.77 | 3 | 1 |
|
| 6 |
Motif group HL_50006.2
Basepair signature:
|
85.92 | -209.77 | 3 | 2 |
|
| 7 |
Motif group HL_13963.3
Basepair signature:
|
85.56 | -196.46 | 3 | 1 |
|
| 8 |
Motif group HL_93535.1
Basepair signature:
|
85.21 | -267.12 | 3 | 1 |
|
| 9 |
Motif group HL_65794.5
Basepair signature:
|
84.86 | -480.57 | 3 | 1 |
Pseudoknot geometry |
| 10 |
Motif group HL_59843.1
Basepair signature:
|
83.10 | -255.03 | 3 | 1 |
|
Loop 20 Hairpin loop
Column numbers: 260-294 - View nucleotides in PDB file(s)
Scored sequences and counts
G----------AAA--------------------C 49
U----------GAA--------------------G 26
G----------CAA--------------------U 24
A----------UACA-------------------U 19
C----------AGAU-------------------G 8
G----------AUAAG------------------C 7
A----------AAA--------------------U 7
GU---------AAGUAGUCAAC-----------AC 6
-----------CAAAA------------------- 6
U----------AAA--------------------A 6
A----------AGAU-------------------U 4
C-UC-------AAAACG--------------GAGG 3
G----------CAAAG------------------C 3
U----------GGAAA------------------A 3
A----------ACA--------------------U 3
C----------AAA--------------------A 3
U----------GAC--------------------G 3
ACC--------GAAAAGGAAAUA---------GGU 2
C----------GUAAGACACUUG-----------G 2
GUA--------GACAAAGA-------------UGC 2
GUG--------GAAG-----------------CAC 2
GUG--------GAAG-----------------CAU 2
A----------AAAAAG-----------------U 2
U----------UAAU-------------------U 2
-----------UCAAU------------------- 2
C----------AAA--------------------G 2
G----------GAA--------------------C 2
U----------GGA--------------------G 2
-----------GAAC-------------------- 2
-----------UCAA-------------------- 2
-----------UGAU-------------------- 2
G----------C-A--------------------U 2
GUAGAGGCCGUGAAACCGCAUA--ACGGUC---GC 1
UUCGCUC----GAAACA-----------GAG-GUG 1
CUC--------AAAACGGAGGUGG----------- 1
GG---------AGCAGGAACCGC----------CC 1
G----------UAAGUAGUCAACA----------C 1
GU---------AGAUAAAGAC------------GC 1
GUA--------GAUAAAGA-------------UAC 1
-----------GAGGCUGAACCAA----------- 1
-----------GUAACACACUUG------------ 1
-----------GUAAGACACUUG------------ 1
-----------GUAAUACACUUG------------ 1
CUC--------GAAACA---------------GAG 1
A----------AAUAAAGC---------------U 1
AG---------CUACGA----------------UU 1
CU---------UAAAUG----------------AG 1
-----------AUUAAAAGA--------------- 1
A----------AAAAAAG----------------U 1
AC---------GGAAA-----------------GU 1
U----------AAAGGUG----------------U 1
A----------UAAAUU-----------------U 1
AU---------GGAAA-----------------A- 1
C----------UAAAUG-----------------G 1
G----------AUAAAA-----------------C 1
G----------GUGAAA-----------------U 1
G----------UAAAAG-----------------C 1
G----------UAAGUU-----------------U 1
U----------GAGAGA-----------------G 1
U----------GGUAGA-----------------G 1
U----------UAAAUG-----------------A 1
U----------UUAAUU-----------------A 1
A----------UACCA------------------U 1
C----------GAAAG------------------U 1
G----------AGAAA------------------C 1
GC---------AAA-------------------GC 1
U----------AAACA------------------A 1
U----------AAAUU------------------U 1
-----------AAUAAA------------------ 1
-----------GGCUGA------------------ 1
-----------GUAAAA------------------ 1
-----------UUGAGU------------------ 1
A----------GAAC-------------------U 1
C----------AAGA-------------------G 1
C----------AGAA-------------------G 1
C----------AGAG-------------------G 1
C----------GAAA-------------------G 1
G----------GAAC-------------------C 1
G----------GAAU-------------------C 1
G----------UAAA-------------------A 1
U----------AAAA-------------------G 1
U----------AAUA-------------------A 1
A----------AAC--------------------U 1
A----------GCA--------------------U 1
C----------AGU--------------------G 1
C----------GCA--------------------G 1
C----------UCA--------------------G 1
G----------AAA--------------------U 1
G----------ACA--------------------C 1
G----------AGA--------------------C 1
G----------GAC--------------------U 1
G----------GGA--------------------A 1
G----------UGU--------------------U 1
U----------GGA--------------------A 1
U----------GUCA-------------------- 1
-----------GAAA-------------------- 1
-----------UAGU-------------------- 1
-----------UGAA-------------------- 1
-----------UGUC-------------------- 1
-----------UGUU-------------------- 1
A----------ACA--------------------- 1
G----------AAA--------------------- 1
G----------AGA--------------------- 1
-----------AAG--------------------- 1
-----------AGU--------------------- 1
Omitted sequenced and counts
----------------------------------- 7
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_75660.5
Basepair signature:
|
70.32 | -1082.44 | 2 | 1 |
|
| 2 |
Motif group HL_53890.2
Basepair signature:
|
66.43 | -186.84 | 2 | 1 |
|
| 3 |
Motif group HL_04783.2
Basepair signature:
|
62.54 | -111.54 | 3 | 2 |
|
| 4 |
Motif group HL_70782.2
Basepair signature:
|
57.95 | -1039.30 | 4 | 2 |
|
| 5 |
Motif group HL_56334.1
Basepair signature:
|
56.89 | -1048.80 | 3 | 2 |
Mini UNCG |
| 6 |
Motif group HL_82710.2
Basepair signature:
|
54.06 | -741.17 | 3 | 2 |
|
| 7 |
Motif group HL_38168.1
Basepair signature:
|
53.71 | -1089.57 | 3 | 2 |
|
| 8 |
Motif group HL_38901.2
Basepair signature:
|
53.00 | -893.32 | 3 | 2 |
tRNA D-loop |
| 9 |
Motif group HL_13189.1
Basepair signature:
|
51.94 | -758.28 | 3 | 2 |
|
| 10 |
Motif group HL_50006.2
Basepair signature:
|
50.18 | -278.47 | 3 | 2 |
|
Loop 21 Internal loop
Column numbers: 419-421, 751-752 - View nucleotides in PDB file(s)
Scored sequences and counts
G-G*CC 46
G-U*AC 45
G-C*GC 38
G-A*UC 35
A-G*CU 27
A-U*GU 13
C-C*GG 10
U-C*GA 10
A-A*UU 7
A-U*AU 7
G-U*GC 7
G-G*CU 5
G-G*UC 5
A-C*GU 4
C-G*CG 3
C-U*AG 3
U-U*AA 3
C-A*UG 2
C-C*GA 2
U-G*CA 2
AUC*GU 1
G-A*CC 1
G-A*UU 1
U-C*GG 1
Omitted sequenced and counts
C-G*-G 8
A-G*-U 3
C-C*-G 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_84476.1
Basepair signature:
|
100.00 | 31.85 | 2 | 2 |
Multiple bulged bases |
| 2 |
Motif group IL_07039.3
Basepair signature:
|
99.64 | 15.35 | 3 | 1 |
Major groove platform |
| 3 |
Motif group IL_42771.1
Basepair signature:
|
98.92 | 21.34 | 3 | 1 |
Multiple bulged bases |
| 4 |
Motif group IL_00225.13
Basepair signature:
|
96.40 | 8.25 | 1 | 1 |
Single bulged G |
| 5 |
Motif group IL_73452.2
Basepair signature:
|
93.53 | 20.15 | 3 | 1 |
|
| 6 |
Motif group IL_81831.1
Basepair signature:
|
91.73 | 19.99 | 3 | 1 |
Intercalated cWS |
| 7 |
Motif group IL_33761.2
Basepair signature:
|
89.21 | 12.52 | 2 | 1 |
|
| 8 |
Motif group IL_66635.5
Basepair signature:
|
88.49 | 16.14 | 2 | 1 |
Major groove intercalation |
| 9 |
Motif group IL_26793.1
Basepair signature:
|
87.41 | 13.56 | 2 | 1 |
Single stack bend |
| 10 |
Motif group IL_90729.1
Basepair signature:
|
87.41 | 12.09 | 1 | 1 |
Single stack bend |
Loop 22 3-way junction loop
Column numbers: 422-446, 490-506, 625-750 - View nucleotides in PDB file(s)
Scored sequences and counts
UUC--AAU---AGAC-G-------U*A-A----A-----UAAC*GA--------------------------------------------------------------------------------------------------------AUAAUCA---------AA-A 11
GAC--AAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------AUGCUAAA----U-UAA-- 10
AAC--AAU---AGAC-G-------G*C-A----A-----GAAU*AA---------------------------------------------------------------------------------------------------------A-UCCAA-------UAA-U 7
AAC--AAU---AGAG---GGU-U-G*C---ACCU-----GAAU*AA---------------------------------------------------------------------------------------------------------UAGCCAA-------UAA-U 5
AAG--AAU---AGAG---GGU-U-A*U---GCCU-----GAAU*AA---------------------------------------------------------------------------------------------------------UAGCCAA-------UAA-U 5
GAC--AAC---AGAC-G-------G*C-A----G-----UAAC*GC---------------------------------------------------------------------------------------------------------A-UUCA--------GGA-C 5
GAC--AAU---UGAU-GA------G*C-A----A-U---GCGG*UA---------------------------------------------------------------------------------------------------------AUUCCAAA----A-CAA-- 4
GAC--AAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------AAGCUAUA----A-UAA-- 4
GAC--AAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------AUGCUAAA----A-UAA-- 4
AAG--AAU---AGAG---GGU-U-A*U---ACCU-----GAAU*AA---------------------------------------------------------------------------------------------------------UAGCCAA-------UAA-U 3
CAC--AAU---AAGU-U-GAU----*--A-AUCA-----GCUU*AA---------------------------------------------------------------------------------------------------------UGACCAA-------CAA-G 3
CGU--AAU---AGAG-A-G-----U*A-U--GCU-----GAAC*GA---------------------------------------------------------------------------------------------------------AUACCAAA------UAA-G 3
CGUAGAAU---AGAC-G-------C*G-A----A-----UAAU*AA--------------------------------------------------------------------------------------------------------AUUCUCAA-------UAA-G 3
GAC--AAU---AGAC-GC------U*AGA----A-----AAAU*AA---------------------------------------------------------------------------------------------------------ACUCCGAA----G-CAA-- 3
UGAU-AAU---AGAU-G-------G*C-A----U-----GAAU*AA---------------------------------------------------------------------------------------------------------AUCUCAAA----A-UAA-G 3
UGAUUAAU---AGAC-A-------U*A-A----A-----UAAU*AA--------------------------------------------------------------------------------------------------------AUUCUCAA-------UAA-G 3
UGAUUAAU---AGAC-G-------U*A-A----A-----UAAU*AA--------------------------------------------------------------------------------------------------------AUUCUCAA-------UAA-G 3
AAU--AAU---AGAC-G-------C*G-A----A-----UAAC*GA---------------------------------------------------------------------------------------------------------AAGCCAAA------CAA-U 3
GAC--AAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------AUGCUAAA----U-UA--A 3
GAU--AAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------AAGCUAUA----A-UAA-- 3
GAU--AAU---AGAU-G-------G*C-A----U-----GAAU*AA---------------------------------------------------------------------------------------------------------AUCUCAAA----A-UAA-- 3
AAC--AAU---AGAC-G-------U*A-A----A-----UAAG*UA----------------------------------------------------------------------------------------------------------GGCCAA-------CAA-U 3
AGC--AAU---AGAC-G-------C*G-A----A-----UAAG*UA----------------------------------------------------------------------------------------------------------GGCCAA-------CAA-U 3
CGC--AAU---AGAC-G-------C*G-A----A-----GAAU*AA---------------------------------------------------------------------------------------------------------AUACCA--------UAA-G 3
-AC--AAG---AGGC-UC------U*A------U-----CCCA*U-----------------------------------------------------------------------------------------------------------UCUCAAA----A-GAA-- 3
CGU--AAU---UGAA---AGG-U-A*UGC-CCUA-----GAAU*AA---------------------------------------------------------------------------------------------------------AUUCGAAU------CAA-G 2
AAG--AAU---AGAG-G-G-U-U-A*U---GCCU-----GAAU*AA---------------------------------------------------------------------------------------------------------UAGCCAA-------UAA-U 2
AAG--AAU---AGAG-G-GUU---A*U---GCCU-----GAAU*AA---------------------------------------------------------------------------------------------------------UAGCCAA-------UAA-U 2
CGC--AAU---AGAU---AUG---A*U---CAUU-----GAAC*GA---------------------------------------------------------------------------------------------------------GUGCCA--------UAA-G 2
CGUAGAAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------AUCUCAAA------UAA-G 2
GAC--AAU---AGAC-GC------U*AGA----A-----AAAU*AA---------------------------------------------------------------------------------------------------------ACUCCGAA-----CCAA-- 2
AAU--AAU---AGAC-G-------G*C-A----A-----UAAG*UA---------------------------------------------------------------------------------------------------------AUACCAAA----A-CAA-U 2
CGAAUAAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------AACUCAU-------UAA-G 2
CAU--AAU---AGAC-G-------A*U-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------AAUCCAAA------UAA-G 2
GAU--AAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------AUGCUAAA----A-UAA-- 2
UGC--AAU---AAAA-AG-----U-*--U----C-----CUCU*AA---------------------------------------------------------------------------------------------------------AUACCCAA------CAA-A 2
-AU--AAG---UAUC-U-------A*U-A----G-----GUCA*UG---------------------------------------------------------------------------------------------------------UUCUCAA-----AGGAA-- 2
AAC--AAU---AGAC-G-------C*G-A----A-----UAAC*GA---------------------------------------------------------------------------------------------------------UUGCCAA-------UAA-U 2
AAU--AAU---ACAC-G-------C*G-A----A-----UAAA*UA---------------------------------------------------------------------------------------------------------AAGCCAU-------CAA-U 2
AGC--AAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------AUGCCAA-------CAA-U 2
CAC--AAU---AGAC-G-------G*C-A----A-----GAAU*AA---------------------------------------------------------------------------------------------------------AAACCAA-------UAA-G 2
AGC--AAU---AGAC-G-------C*G-A----A-----UAAC*GA---------------------------------------------------------------------------------------------------------A-GCCAA-------GAA-U 2
GAC--AAC---AGAC-G-------U*A-A----G-----UAAC*GC---------------------------------------------------------------------------------------------------------A-UUCA--------GGA-C 2
CGC--AAU---AUGC----------*-------C-------AU*AA----------------------------------------------------------------------------------------------------------UAUCAAC------UAA-G 2
CGC--AAU---AGAG-A-------C*G-C----C-----GAAU*AA--------CUUGAAUUGUCGGAGUGAGUCGCAGUUGCUGCGUCAGAAAACUCCCAGAGGUUAAUCUCUGCUGACAGUUC--------------------------UUCCCAA-------UAA-G 1
GAC--AAUCGCAUAA-G-------U*A-A--------------*----------GCGGGGACUGACGCGGCUCUUUCGCGCCACAUAGGGAUAUGUGGGGAACGCUAAGAGAAUUCCAAAA--------------------------------------------CAA-- 1
UGAAGAAU---AGAC-G-------A*U-A----A-----UAAG*CAGAUUGUUGACAUUGUUGCCGCAAGGUGCAAUCUU--------------------------------------------------------------CAGUAAUC-GUGUUAG-------UAA-G 1
AAU--AAU---UGAA-GAAGUGUAC*GGAUACUAAC---ACGG*UA---------------------------------------------------------------------------------------------------------AUAUCCAAA---A-CAA-- 1
GAC--AAU---UGAACAGGUA-UAC*GGA-UACUGAC--ACGG*UA--------------------------------------------------------------------------------------------------------AUAUCCA-----AAACAA-- 1
GAC--AAUU-GAGCA-G-GUA-UAC*GGA-UACUGAC--ACGA*UA--------------------------------------------------------------------------------------------------------AUAUCCAAA----A-CAA-- 1
GAC--AAUU-GAGCA-G-GUA-UAC*GGA-UACUGAC--ACGG*UA--------------------------------------------------------------------------------------------------------AUAUCCAAA----A-CAA-- 1
GAU--AAU---UGAG-GAGAU-U-C*G-A-AUCAAU---GCGG*UA---------------------------------------------------------------------------------------------------------AUUCCAAA----A-CAA-- 1
AUAG-AAGU--AAGC-A-----CAU*G-A----U-GACUUUA-*-A--------C------------------------U-----------------------------------------------------------------------AAAUCAAA------CAA-U 1
CGC--AAU---AGAA-A-GCU-AGG*U-A-AGCC-----GAAU*AA--------------------------------------------------------------------------------------------------------AAGACCAA-------UAA-G 1
AAC--AAG---UGUC-A-GUG-AAC*U-AUAGCU-----GGCC*G-----------------------------------------------------------------------------------------------------------UGUCGAA------CAA-U 1
CAU--AAU---UGAA-A-GGU---A*U-A-CCCU-A---GAAU*AA---------------------------------------------------------------------------------------------------------AUUCGAAU------CAA-G 1
CGU--AAU---UGAA-A-GGU---A*U-A-CCCU-A---GAAU*AA---------------------------------------------------------------------------------------------------------AUUCGAAU------CAA-G 1
CGU--AAU---UGAA-A-GGU---A*U-A-CCCU-A---GAAU*AA---------------------------------------------------------------------------------------------------------GUUCGAA-----U-CAA-G 1
CGU--AAU---UGAA-A-GGU---G*U-A-CCCU-A---GAAU*AA---------------------------------------------------------------------------------------------------------AUUCGAAU------CAA-G 1
AAU--AAU---AGAA---GAC-AAG*U-A-GUCU-----GAAU*AA---------------------------------------------------------------------------------------------------------AUACCAC-------CAA-U 1
AGC--AAU---AGAA---GGU-GGG*U-G-ACCU-----GAAU*AA---------------------------------------------------------------------------------------------------------AGACCAA-------CAA-U 1
CAC--AAU---AGAA---GCU-AAG*U-A-AGCC-----GAAU*AA---------------------------------------------------------------------------------------------------------GUGCCAC-------UAA-G 1
CAC--AAU---AGAA-A-GGA-U-A*G-A-UCCC-----GAAU*AA---------------------------------------------------------------------------------------------------------ACUCGAA-------CAA-G 1
CAU--AAU---AGAA---GUC-AAG*U-A-GACU-----GAAU*AA---------------------------------------------------------------------------------------------------------AGACCAA-------UAA-G 1
CGC--AAU---ACGA-A-GGG---G*C-C-CCCG-----AAAC*GA---------------------------------------------------------------------------------------------------------ACCUCACC------CAC-G 1
CGC--AAU---AGAA---GGC-AAG*U-A-GCCC-----GAAU*AA---------------------------------------------------------------------------------------------------------AUACCAC-------CAA-G 1
CGC--AAU---AGAA---GGC-AAG*U-A-GCCC-----GAAU*AA---------------------------------------------------------------------------------------------------------AUACCAC-------UAA-G 1
CGC--AAU---AGAA---GUU-GAG*U-G-AACU-----GAAG*UA---------------------------------------------------------------------------------------------------------AAGCCAA-------UAA-G 1
GGU--AAU---AGAA-A-GCA-U-U*A-A-UGCC-----GAAG*UA---------------------------------------------------------------------------------------------------------AUACCAA-------UAA-C 1
UGU--AAU---AGAG-A-GUU-AC-*----UGCU-----UAAC*GA---------------------------------------------------------------------------------------------------------GUACCAAA----A-UAA-G 1
CAUA-AAG---AGAA---GCA---C*G---UGCU-U---ACUC*AA---------------------------------------------------------------------------------------------------------AAUCCAA-------UAA-G 1
CGC--AAU---AGGA-A-GCC-A-G*C-A-GGCC-----AAAU*AA---------------------------------------------------------------------------------------------------------AAACCA--------CAA-G 1
GAC--AAU---AGAC-G-------C*G-A----A-----UAAC*GA---------------------------------------------------------------------------------------------------------AUACCAAU-ACCAAUAA-C 1
UGUAUAAU---AGAC-GA------C*GGA----A-----UAAC*GA------------------------------------------------------------------------------------------------------A-AUAUGCAG-------GCG-G 1
UGUAUAAU---AGAC-GA------C*GGA----A-----UAAC*GA------------------------------------------------------------------------------------------------------A-AUAUGCAG-------GUG-G 1
AAG--AAU---AGAG---GGU-U-G*C---ACCU-----GAAU*AA---------------------------------------------------------------------------------------------------------UAGCCAA-------UAA-U 1
AAG--AAU---AGAG---GGU-UA-*--C-ACCU-----GAAU*AA---------------------------------------------------------------------------------------------------------UAGCCAA-------UAA-U 1
AAG--AAU---AGAG-G--GU-U-G*C---ACCU-----GAAU*AA---------------------------------------------------------------------------------------------------------UAGCCAA-------UAA-U 1
AAG--AAU---AGAG-G-G-U-U-A*U---ACCU-----GAAU*AA---------------------------------------------------------------------------------------------------------UAGCCAA-------UAA-U 1
AAG--AAU---AGAG-G-GUU---A*U---ACCU-----GAAU*AA---------------------------------------------------------------------------------------------------------UAGCCAA-------UAA-U 1
AAG--AAU---AGAG-G-GUU---G*C---ACCU-----GAAU*AA---------------------------------------------------------------------------------------------------------UAGCCAA-------UAA-U 1
CGC--AAU---AGCA-G-GAG----*----CUCU-G---AAAG*CA---------------------------------------------------------------------------------------------------------AAUCCAAA------UAA-G 1
GAC--AAU---AGAA-A-GCC---U*A---GGCC-----GAAU*AA---------------------------------------------------------------------------------------------------------ACACCAA-------CAA-C 1
GGC--AAU---AGAC-A-GCC---U*A---GGCC-----GAAU*AA---------------------------------------------------------------------------------------------------------AUACCAC-------CAA-C 1
U----AAUC--ACAA---AGC-AAC*G-A-GAUA-----AAAG*GA----------------------------------------------------------------------------------------------------------UACCAA-------UAA-A 1
UGC--AAU---AGAC-A-GCU---U*A---AGCC-----GAAU*AA---------------------------------------------------------------------------------------------------------AUACCAA-------CAA-A 1
UGUAAAAU---AGAC-G------AC*GGA----A-----UAAC*GA------------------------------------------------------------------------------------------------------A-AAAUGCAG-----G-C---A 1
-AU--AAU---AGAA---GCG-G-U*U-C-CGCC-----GAAU*AA---------------------------------------------------------------------------------------------------------AUACCAA-------UAA-- 1
AAC--AAU---AGAA-A-GUU---A*U---AGCC-----U-CU*AA---------------------------------------------------------------------------------------------------------AUACCAA-------UAA-U 1
AAU--AAU---AGAG-A-G-----C*G-U--GCU-----GAAG*UA---------------------------------------------------------------------------------------------------------AUACCAAC----A-UAA-- 1
AG---AAU---AGAG---GGU-U-A*U---ACCU-----GAAU*AA---------------------------------------------------------------------------------------------------------UAGCCAA-------UAA-U 1
CAC--AAU---AGAG-A---G-CUG*C------U-----UAAC*GA---------------------------------------------------------------------------------------------------------AUACCAAA----A-UAA-G 1
CGC--AAU---AGAU-A-GCA---G*U---UGCC-----GAAU*AA---------------------------------------------------------------------------------------------------------AUACCA--------UAA-G 1
UGAUUAAU---AGAC-A-------U*A-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------AUUCUCAA----A-UAA-G 1
CAU--AAU---UGAA-A-------C*GGA----G-----UAGU*AA--------------------------------------------------------------------------------------------------------AUCUUCAA-----C-CAA-G 1
CCUACAAU---AGAC-G-------C*G-A----A-----UAAC*GA---------------------------------------------------------------------------------------------------------AUUGCAG-------GAAGG 1
CCUACAAU---AGAC-G-------C*G-A----A-----UAAC*GA--------------------------------------------------------------------------------------------------------AUUGCAG--------AAAGG 1
CG---AAUA--AUAA-AC-----GC*G-A-A--U-----UAAC*GA---------------------------------------------------------------------------------------------------------AUUUCAU-------UAA-G 1
CGAAUAAU---AGAC-G-------C*G-A----A-----UAAU*AA--------------------------------------------------------------------------------------------------------AAUCUCAA-------UAA-G 1
CGUAGAAA---AGAC-G-------C*G-A----A-----UAAU*AA----------------------------------------------------------------------------------------------------------CUCUAAA----A-GAA-G 1
GAAU-AAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------AAUCUCAA----ACUAA-- 1
GAC--AAU---AGAC-GC------U*AGA----A-----AAAU*AA---------------------------------------------------------------------------------------------------------ACUCCGAA------CCA-A 1
GAC--AAU---UGAG-GA------G*C-A----A-U---GCGG*UA---------------------------------------------------------------------------------------------------------AUUCCAAA----A-CAA-- 1
GAU--AAU---AGAU-G---G---U*A---C--A-U---GAAU*AA---------------------------------------------------------------------------------------------------------AUCUCAAAA-----UAA-- 1
GAU--AAU---UGAG-GA------G*C-A----A-U---GCGG*UA---------------------------------------------------------------------------------------------------------AUUCCAAA----A-CAA-- 1
GAU--AAU---UGAG-GA------G*CGA----U-----GCGG*UA----------------------------------------------------------------------------------------------------------AUUCCAAA---A-CAA-- 1
GAU--AAU---UGAG-U------AA*UAA----U-----GCGG*UA---------------------------------------------------------------------------------------------------------AAUCCAAA----A-CAA-- 1
UGC--AAU---AAAA-A-----GUC*G-U----C-----CUCU*AA--------------------------------------------------------------------------------------------------------AUACCCAA-------CAA-A 1
UGU--AAU---AGAC-G-------G*C-A----A-----UAAC*GA---------------------------------------------------------------------------------------------------------AUUACCAA----AACAA-G 1
---A-AAU---CGGG-A-G----AC*GG----CA-U---ACCC*GA--------------------------------------------------------------------------------------------------------AUAUCGC--------UAA-A 1
AAC--AAU---AGAC-G-------C*G-A----A-----UAAC*GA---------------------------------------------------------------------------------------------------------A-UGCAAA----AGCAA-U 1
AAU--AAU---AGAC-G-------G*C-A----A-----UAAG*UA---------------------------------------------------------------------------------------------------------AUGUCAAA----A-CAA-U 1
AUA--AAU---AGAC-G-------C*G-A----A-----UAAG*UA------------------------------------------------------------------------------------------------------C-UAAACCAA-------GUA-U 1
CAC--AAU---AGAG-A-------G*CGC----U-----UAAU*AA---------------------------------------------------------------------------------------------------------AUUCUAAU------UAA-G 1
CAU--AAU---AGAC-CG------C*G-A----A-----GAAU*AA---------------------------------------------------------------------------------------------------------GUUCUAAA------UAA-G 1
CAU--AAU---AGAC-G-------A*U-A----A-----UAAG*UA---------------------------------------------------------------------------------------------------------AAGCUAUA----A-UAA-G 1
CG---AAUA--AUAA-AC-----GC*G-A----A-----UAAC*GA---------------------------------------------------------------------------------------------------------AUUUCAU-------UAA-G 1
CGA--AUA---AUAA-AC-----GC*G-A----A-----UAAC*GA---------------------------------------------------------------------------------------------------------AUUUCAU-------UAA-G 1
CGAAUAAU---AAAC-G-------C*G-A----A-----UAAC*GA---------------------------------------------------------------------------------------------------------AUUUCAU-------UAA-G 1
CGC--AAU---AGAC-G-------C*G-A----A-----UAAC*GA---------------------------------------------------------------------------------------------------------AUACCUAA----A-UAA-G 1
CGC--AAU---AGAC-GC------C*G-A----A-----UAAC*GA----------------------------------------------------------------------------------------------------------ACGCACAA-----UAA-G 1
CGU--AAU---AGAC-G-------U*A-A----A-----UAAG*UA---------------------------------------------------------------------------------------------------------AUCCCAAA----A-CAA-G 1
GAC--AAG---AAGC-UC-----UA*U-A----U-----CUCA*UA---------------------------------------------------------------------------------------------------------A-CUCAC-----AGGAA-- 1
UGUAUAAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------AUCUCAU-------UAA-G 1
AAC--AAU---AGAC-G-------C*G-A----A-----UAAC*GA---------------------------------------------------------------------------------------------------------AAGCCAAA------CAA-U 1
AAU--AAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------AAUCCAAA------UAA-U 1
AAU--AAU---AGAC-G-------G*C-A----A-----GAAC*GA---------------------------------------------------------------------------------------------------------AUACCAAA------CAA-U 1
AAU--AAU---AUAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------AUUCCAAA------UAA-U 1
AAUA-AAU---AGAC-G-------C*G-A----A-----GAAC*GA---------------------------------------------------------------------------------------------------------AUACCAA-------UAA-U 1
AGU--AAU---AGAC-G-------C*G-A----A-----UAAG*UA----------------------------------------------------------------------------------------------------------UUCCAAA----A-UAA-U 1
CAU--AAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------AUGCCAAC------CAA-G 1
CAU--AAU---AGAC-GC------C*G-A----A-----GAAC*GA---------------------------------------------------------------------------------------------------------AUACCAA-------CAA-G 1
CGAAUAAU---AGAC-G-------C*G-A----A-----UAA-*AA---------------------------------------------------------------------------------------------------------AUCUCAU-------AAA-G 1
CGC--AAU---AGAC-G-------U*A-A----A-----GAAA*UA---------------------------------------------------------------------------------------------------------AUACCA------AAUAA-G 1
GAC--AAG---AAGC-UC------U*A-A----C-----UCAC*G----------------------------------------------------------------------------------------------------------UUCUCAA-----AGGAA-- 1
GAC--AAU---AGAC-G-------C*G-A----A-----UAAC*AA---------------------------------------------------------------------------------------------------------ACGCUAUA----A-UAA-- 1
GAC--AAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------AACUCAAA----C-CAA-- 1
GAC--AAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------ACGCUAAA----A-UAA-- 1
GAC--AAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------AUGCCAAA----U-UAA-- 1
GAG--AAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------AUGCUAAA----A-UAA-- 1
GAU--AAU---AGAC-G-------C*G-A----A-----UAAC*GA---------------------------------------------------------------------------------------------------------AUGCUAAA----G-CAA-- 1
GAU--AAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------AUGCUAAA----U-UAA-- 1
GAU--AAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------UAGCUAAA----A-UAA-- 1
GGC--AAU---AGAC-G-------C*G-A----A-----UAAG*UA---------------------------------------------------------------------------------------------------------A-UCCAAA----U-UAA-C 1
GGU--AAU---AGAC-G-------C*G-A----A-----UAAG*UA---------------------------------------------------------------------------------------------------------A-UCCAAA----C-UAA-C 1
U----AAU---CAAAAC--CG---C*G-A-CG-A-----UAAC*GA----------------------------------------------------------------------------------------------------------UACCA--------UAA-A 1
UAU--AAU---AGAC-G-------C*G-A----A-----GAAU*AA---------------------------------------------------------------------------------------------------------AAUCCAAA------UAA-G 1
UGC--AAU---AAAA-AG-----U-*--U----C-----CUCU*AA---------------------------------------------------------------------------------------------------------AUACCCAG------CAA-A 1
UGU--AAU---AGAC-G-------C*G-A----A-----GAAU*AA---------------------------------------------------------------------------------------------------------AAUCCAAA------UAA-A 1
-AC--AAG---------UACC-UA-*-UA-GGUC--------G*UA----------------------------------------------------------------------------------------------------------UCUCAAA----AACAA-- 1
A----AAUC--GGGAGAC------C*G-C----G-----UACC*AA----------------------------------------------------------------------------------------------------------UGUCAA-------GAA-A 1
AAC--AAU---AGAC-G-------C*A-A----A-----UAAC*GA---------------------------------------------------------------------------------------------------------UUGCCUC-------UAA-U 1
AAC--AAU---AGAC-G-------C*G-A----A-----UAAC*GA---------------------------------------------------------------------------------------------------------UUGCCUC-------UAA-U 1
AGU--AAU---AGAC-G-------C*G-A----A-----UAAC*GA----------------------------------------------------------------------------------------------------------AGCCAAA------UAA-U 1
CA---AAC---AGAC-GC------C*GGA----A-----UAAC*GA---------------------------------------------------------------------------------------------------------AGACCCU--------GC-G 1
CAA--AAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------AUACCAA-------CAA-G 1
CAC--AAU---AGAC-G-------G*C-A----A-----AAAU*AA---------------------------------------------------------------------------------------------------------AUACCAA-------UAA-G 1
CAC--AAU---AGAC-G-------G*C-A----G-----GAAU*AA---------------------------------------------------------------------------------------------------------AAACCAA-------UAA-G 1
CAU--AAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------AAUCCAC-------UAA-G 1
CAU--AAU---AGAC-GC------C*G-A----A-----UAAU*AA----------------------------------------------------------------------------------------------------------UGCCAA-------UAA-G 1
CGC--AAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------AGCCAAA-------CAA-G 1
GAC--AAU---AGAC-G-------C*G-A----A-----UAAC*GA---------------------------------------------------------------------------------------------------------AUACCAA-------UAA-C 1
GAU--AAU---AGAC-G-------C*G-A----A-----UAAG*UA----------------------------------------------------------------------------------------------------------AUCCAAA------CAA-C 1
GGC--AAU---AGAC-G-------C*G-A----A-----UAAC*GA---------------------------------------------------------------------------------------------------------AUACCAA-------UAA-C 1
UAC--AAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------AUGCCAA-------UAA-G 1
UGC--AAU---AGAG-G-------U*G-C----U-----GAAU*AA---------------------------------------------------------------------------------------------------------CGGUUCA-------UAA-G 1
-AC--AAG---AAGC-UC------U*A------U-----CUCA*G----------------------------------------------------------------------------------------------------------UUCUCAA-----AGUAA-- 1
AAG--AAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------A-CUCAA-------UAA-U 1
AGC--AAU---AGAC-G--------*--A----A-----GAAC*GA---------------------------------------------------------------------------------------------------------AUACCAAC------CAA-U 1
AGC--AAU---AGAC-G-------C*G-A----A-----UAAC*GA----------------------------------------------------------------------------------------------------------UGCCAA-------UAA-U 1
AGU--AAU---AGAC-G--------*--A----A-----GAAC*GA---------------------------------------------------------------------------------------------------------AUACCAAC------CAA-U 1
CAG--AAU---AUGG-G-------G*C-A----C-----CAAU*AA---------------------------------------------------------------------------------------------------------A-CGCAC-------CAA-G 1
CAG--AAU---AUGG-G-------G*C-A----C-----CAAU*AA---------------------------------------------------------------------------------------------------------A-CGCAC-------UAA-G 1
CAG--AAU---AUGG-G-------G*C-A----C-----CAAU*AA---------------------------------------------------------------------------------------------------------A-UGCAC-------CAA-G 1
CAG--AAU---AUGG-G-------G*C-A----C-----UAAU*AA---------------------------------------------------------------------------------------------------------A-CGCAC-------UAA-G 1
CAU--AAU---AGAC-G-------C*G-A----A-----UAAU*AA----------------------------------------------------------------------------------------------------------UACCAA-------UAA-G 1
CGC--AAU---AGAC-G-------C*G-A----A-----GAAU*AA---------------------------------------------------------------------------------------------------------AUGCCA--------UAA-G 1
CGC--AAU---AGAU-A-------U*A-U----U-----GAAC*GA---------------------------------------------------------------------------------------------------------GUGCCA--------UAA-G 1
GAC--AAU---AGAC-G-------C*G-A----A-----UAAG*UA----------------------------------------------------------------------------------------------------------CAUCAA-------UAA-C 1
GAC--AAU---AGAC-GC------U*A-A----U-----G-A-*-A---------------------------------------------------------------------------------------------------------AUGCUAAA----A-UAA-- 1
GGC--AAU---AGAC-G-------C*G-A----A-----UAAU*AA---------------------------------------------------------------------------------------------------------A-GCCAC-------UAA-C 1
UUC--AAU---AGAC-G-------U*A-A----A-----UAAC*GA---------------------------------------------------------------------------------------------------------AUAAUC--------AAA-A 1
-AC--AAG---AAGC-UC------U*A------U-----CUCG*C-----------------------------------------------------------------------------------------------------------UCUCA-----AAGGAA-- 1
-AC--AAG---AGGC-UC------U*A------U-----CCCA*U-----------------------------------------------------------------------------------------------------------CCUCAA-----AGGAA-- 1
-AC--AAG---UAU--U-------U*A-A----A-----U-CA*UA---------------------------------------------------------------------------------------------------------UUCUCAA-----AGGAA-- 1
-AU--AAG---AGGC-UC------U*A------U-----CCCG*U-----------------------------------------------------------------------------------------------------------UCCUAAA-----GGAA-- 1
CAC--AAG---AA-----------G*C------U-------CG*UA----------------------------------------------------------------------------------------------------------UGCCAAA----A-AAA-G 1
CGC--AAG---AA-----------G*C------U-------CG*UA----------------------------------------------------------------------------------------------------------UGCCAAA------UAA-G 1
CGC--AAU---AUAC----------*-------C-------AU*AA----------------------------------------------------------------------------------------------------------UAUCAAU------UAA-G 1
Omitted sequenced and counts
AUUACAAU-----------------*-----------------*----------UGCCGGCGGAGAUUUAGGCGCUCCGUGUAAAGCAGUCUCACGCUAAUCUGGCAGACAUGUCAGGGAACCACGAGAUAAAUGUAAGUUA-----------------------AAA-U 2
-AU--AAG-----------------*-----------------*-----------UAUCUAAUGCGUGUCAUUAGGUCACCUCGGUAUGACUAGGGUGAGAGCUAGGAACCGUAGAGGUGUUCUCAAGG------------------------------------GAA-- 1
-------------------------*-----------------*----------AAAUCGGGAGACCAACAUGGGCGUACCCACAUAUCCCACUACUGGAGACAGUGGUAAGGGCAAUGAGUGAAGAUCGCU---------------------------------AAA-- 1
No Matches Found
View All Results for this LoopLoop 23 Hairpin loop
Column numbers: 449-487 - View nucleotides in PDB file(s)
Scored sequences and counts
C---------------UGU-------------------G 32
U---------------CGGUG-----------------A 17
G---------------CGGUG-----------------C 16
U---------------GAAUA-----------------G 14
U---------------GAAUA-----------------A 13
C---------------CAGUG-----------------G 10
U---------------CUGUG-----------------A 9
U---------------CAGUG-----------------A 8
U---------------UAAAA-----------------G 7
C---------------AGU-------------------G 7
CU--------------CGAAA----------------GG 6
GU--------------CAAAA----------------GC 6
GU--------------GAAUA----------------GC 6
C---------------CUGUG-----------------G 6
C---------------GGU-------------------G 6
UCACA-----------GCAA--------------UGGGG 5
G---------------CAGUG-----------------C 5
A---------------GAAA------------------U 5
GU--------------UUAAUC---------------GC 4
G---------------AGGUU-----------------C 4
C---------------GUG-------------------G 4
UG--------------GAAA-----------------CA 3
A---------------CGGUG-----------------U 3
A---------------CUGUG-----------------U 3
G---------------AAGUU-----------------C 3
G---------------CUGUG-----------------C 3
U---------------GAGAA-----------------G 3
A---------------GCAA------------------U 3
----------------GUGAA------------------ 3
C---------------CGGUG-----------------G 2
G---------------CGUGU-----------------C 2
G---------------CUGUG-----------------U 2
U---------------CAAAA-----------------G 2
U---------------UACUA-----------------A 2
C---------------AGAC------------------G 2
U---------------ACGC------------------A 2
C---------------ACU-------------------G 2
U---------------UUU-------------------A 2
----------------UGUG------------------- 2
AGUUUUGAGUUGACUCUUAA---GAGUUGAGGAGAAAAC 1
AAGGGGAUUU------ACGGA--------AAA---CC-U 1
UCACA-----------GUCAAA------------UGGGA 1
UGGCA-----------GUAAUA------------UGUUG 1
CCACA-----------GCAA--------------UGGGG 1
UCU-------------CGAAA---------------GGA 1
C---------------UUGAGAU--------------AG 1
AU--------------GGAAU----------------AU 1
CC--------------CGGAA----------------GG 1
CU--------------GAACA----------------GG 1
U---------------GGAUAAG---------------A 1
UU--------------CUAGG----------------AA 1
UU--------------UGUAU----------------AG 1
C---------------UUUUG----------------AG 1
UG--------------UUGG-----------------UA 1
UU--------------GAGA-----------------UA 1
A---------------CUCGG-----------------U 1
A---------------CUGUA----------------A- 1
C---------------AACUU-----------------G 1
C---------------GACAG-----------------G 1
C---------------GGUGA-----------------G 1
C---------------UAAUA-----------------C 1
C---------------UUGCA-----------------G 1
G---------------AUUCG-----------------U 1
G---------------GUAUA-----------------C 1
U---------------CUGUG-----------------C 1
U---------------GAAAA-----------------G 1
U---------------GAUAA-----------------G 1
U---------------UAACA-----------------G 1
U---------------UAAUA-----------------G 1
U---------------UUAUA-----------------A 1
U---------------UUUUA-----------------A 1
A---------------CUGU------------------U 1
A---------------GUAA------------------U 1
C---------------AGA------------------UG 1
C---------------AGAU------------------G 1
C---------------GAAA------------------G 1
C---------------GUAA------------------G 1
G---------------GAAA------------------C 1
----------------CACUG------------------ 1
----------------CAGUG------------------ 1
A---------------ACU-------------------U 1
C---------------UCU-------------------G 1
U---------------AAG-------------------A 1
U---------------GGU-------------------A 1
U---------------UGU-------------------A 1
U---------------UGU-------------------G 1
----------------ACGU------------------- 1
----------------AGUU------------------- 1
Omitted sequenced and counts
--------------------------------------- 7
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_59843.1
Basepair signature:
|
45.58 | -207.49 | 3 | 2 |
|
| 2 |
Motif group HL_48417.5
Basepair signature:
|
37.10 | -104.88 | 3 | 2 |
|
| 3 |
Motif group HL_75660.5
Basepair signature:
|
37.10 | -414.06 | 2 | 2 |
|
| 4 |
Motif group HL_50537.6
Basepair signature:
|
33.57 | -112.51 | 4 | 3 |
tRNA anticodon loop with synthetase |
| 5 |
Motif group HL_59330.1
Basepair signature:
|
30.74 | -780.64 | 5 | 4 |
|
| 6 |
Motif group HL_56334.1
Basepair signature:
|
28.98 | -484.16 | 3 | 2 |
Mini UNCG |
| 7 |
Motif group HL_53890.2
Basepair signature:
|
26.86 | -131.44 | 3 | 2 |
|
| 8 |
Motif group HL_07886.3
Basepair signature:
|
26.15 | -134.38 | 4 | 3 |
|
| 9 |
Motif group HL_13189.1
Basepair signature:
|
26.15 | -428.10 | 3 | 3 |
|
| 10 |
Motif group HL_04783.2
Basepair signature:
|
25.80 | -137.05 | 3 | 3 |
|
Loop 24 Internal loop
Column numbers: 511-522, 571-620 - View nucleotides in PDB file(s)
Scored sequences and counts
G---UUAG---G*CAAAC--------------------------------------------C 23
G---UUAG---G*UAAAC--------------------------------------------C 11
----AAAG---A*AAACUA-------------------------------------------- 10
U---GAU----G*CUA----------------------------------------------A 9
U---AA-----G*UUACU--------------------------------------------G 8
----GUA----G*CGAA---------------------------------------------- 8
G---UUAG---G*CAGUC--------------------------------------------C 7
C---GG-----G*CA-----------------------------------------------G 5
U---AAGU---U*AUUACU-------------------------------------------A 4
----AAGGG--G*UGACAG-------------------------------------------- 4
G---UUAG---G*CACAC--------------------------------------------C 4
G---UUAG---G*CAGAC--------------------------------------------C 4
U---AGAC---C*GUUAG--------------------------------------------G 4
----AAAC---C*GUAAG--------------------------------------------- 4
G---GUA----G*CGAA---------------------------------------------C 4
----AAGGGA-U*ACGACAG------------------------------------------- 3
U---AGAG---G*CAAUC--------------------------------------------G 3
U---AUU----G*CUUCC--------------------------------------------G 3
----UCAG---G*CUCAA--------------------------------------------- 3
U---UGU----G*CAA----------------------------------------------A 3
----GAU----G*CU------------------------------------------------ 3
C---AAGCG--A*UAAAGCCAAU---------------------------------------G 2
----GAAAC--C*GCGAACUUA----------------------------------------- 2
----GAUG---C*GAGGUAAGUA---------------------------------------- 2
U---AGAC---C*GAGCCAAU-----------------------------------------G 2
----AAGGGA-U*ACAAUAG------------------------------------------- 2
----GAAACC-U*GAACUUA------------------------------------------- 2
A---AAGC---U*AUUAC--------------------------------------------U 2
A---UAAG---G*CAAAC--------------------------------------------U 2
A---UAAG---G*CAGAC--------------------------------------------U 2
G---UUAG---A*UAAAC--------------------------------------------C 2
U---AAAC---C*GUUAG--------------------------------------------G 2
----UGAU---G*CUAUAU-------------------------------------------- 2
G---AAUA---U*GGAU---------------------------------------------A 2
----AAAC---C*GUUAG--------------------------------------------- 2
----AAGG---G*GACAG--------------------------------------------- 2
A---GU-----C*GCAGC--------------------------------------------U 2
G---CGA----G*CAAA---------------------------------------------C 2
G---GGA----G*CGAA---------------------------------------------C 2
U---A--A---G*CCAAU--------------------------------------------G 2
U---AA-----G*CCAAU--------------------------------------------G 2
U---AU-----G*CCUCU--------------------------------------------A 2
------AA---G*CCAAAG-------------------------------------------- 2
----GCAA---G*CAAA---------------------------------------------- 2
----UGAU---G*CUAA---------------------------------------------- 2
U---GAU----G*CUA----------------------------------------------G 2
----A------G*CCAAAA-------------------------------------------- 2
----CAA----G*CAAA---------------------------------------------- 2
----CGA----G*CAAA---------------------------------------------- 2
----CUA----G*CAAA---------------------------------------------- 2
----C------G*CGUAG--------------------------------------------- 2
A---UAAG---G*CAGUCUCUAAAGUAAAUAUUUCUAUC------AGAGGAUAGGAAUAU--U 1
----AAUG---C*GA-------------GAGCGAUCGGGAUCAUGAGCGCCCGAUC-CUUUA- 1
C---AGACA--G*GUGUGAAAACUU-------------------------------------G 1
UA--GACA---G*UGUGAAAAACUU-------------------------------------G 1
A---UG-----C*GAAUUGUAUAAG-------------------------------------U 1
C---AGUGAA-U*GAACCAAA-----------------------------------------G 1
G---CAAGGC-C*GAACCAAC-----------------------------------------C 1
G---GUAGGC-C*GAACUGAA-----------------------------------------C 1
G---GUAUGA-U*GGAACCGU-----------------------------------------A 1
----GAUG---C*GAGUUAAGUA---------------------------------------- 1
----GAUG---C*GAGUUAGGUA---------------------------------------- 1
----GUAGGC-C*GAACUGAA------------------------------------------ 1
C---AGA----C*GAAAAACUU----------------------------------------G 1
G---AAAGUG-U*AAAUAC-------------------------------------------C 1
U---AGA----C*GAAAAACUU----------------------------------------G 1
----AAACGG-C*GGUACGC------------------------------------------- 1
----AAGGGG-U*AUGACGG------------------------------------------- 1
----AGAUGGUC*GGACAA-------------------------------------------- 1
----GAAACC-U*GAACUU-------------------------------------------A 1
A---ACAC---C*GGAGAAA------------------------------------------G 1
C---GGGCC--C*GAAGCA-------------------------------------------G 1
----AAAGA--C*GAAACUA------------------------------------------- 1
----AGAUG--G*CGGACAA------------------------------------------- 1
----UGAAG--U*ACAAAUC------------------------------------------- 1
A---AGGA---U*ACAACC-------------------------------------------G 1
A---U--G---C*GAGUUAAG-----------------------------------------U 1
A---UG-----C*GAGAUAAG-----------------------------------------U 1
A---UG-----C*GAGGUAAG-----------------------------------------U 1
C----------U*AAUGCUGAUU---------------------------------------G 1
C---AGAC---U*AUUAAG-------------------------------------------G 1
----AAGGG--G*UGACGG-------------------------------------------- 1
----AAUG---U*AGAAACG------------------------------------------- 1
----GAAUA--U*GGGAUA-------------------------------------------- 1
A---U--G--CC*GAUAAG-------------------------------------------U 1
C---AAAC---C*GUAAG--------------------------------------------G 1
C---AAAC---C*GUUAG--------------------------------------------G 1
G---AAAC---C*AACUU--------------------------------------------A 1
G---AAGA---U*AAGCC--------------------------------------------C 1
G---AAUA---U*AGGAU--------------------------------------------A 1
G---AAUA---U*GGGAU--------------------------------------------A 1
G---UAAG---G*UAAAC--------------------------------------------C 1
G---UUAG---A*UAGAC--------------------------------------------C 1
G---UUAG---U*AAAAC--------------------------------------------C 1
G---UUAG---U*GAAGG--------------------------------------------C 1
U---AAGU---G*UUACU--------------------------------------------A 1
U---AUG----C*GACACA-------------------------------------------G 1
U---GAUG---U*GACUA--------------------------------------------A 1
U---UGC----C*GAUACA-------------------------------------------A 1
----AAGG---G*CAACCG-------------------------------------------- 1
----AGGGC--U*AAGUA--------------------------------------------- 1
A---A-AG---A*AAACU--------------------------------------------A 1
A---AAC----C*GUUUA--------------------------------------------G 1
A---AAU----C*GCAAA--------------------------------------------U 1
A---AGC----C*GAAAC--------------------------------------------U 1
U---A-UU---G*CUUCU--------------------------------------------G 1
U---AGUA---A*UGAA---------------------------------------------A 1
U---UCAA---U*AGAA---------------------------------------------G 1
----AAAC---C*GUCAG--------------------------------------------- 1
----CGAG---G*CUGAC--------------------------------------------- 1
----GAAA---U*AGGA---------------------------------------------A 1
----GGAA---C*GAUGG--------------------------------------------- 1
----UUAG---G*CAGAC--------------------------------------------- 1
A---AA-----C*GUAAA--------------------------------------------U 1
A---AA-----U*AUUAC--------------------------------------------U 1
A---AAC----C*G-UAA--------------------------------------------G 1
A---G--G---C*GAUUG--------------------------------------------U 1
A---GG-----C*GAUUG--------------------------------------------U 1
A---UA-----C*GUCAC--------------------------------------------U 1
A---UA-----C*GUCCC--------------------------------------------U 1
A---UG-----C*GAUUG--------------------------------------------U 1
AUGCC------U*AA---------G-------------------------------------U 1
C---AA-----G*CCAAU--------------------------------------------G 1
C---CAAU---G*UAU----------------------------------------------G 1
G---AUA----G*CAAC---------------------------------------------C 1
G---CAA----G*CAAC---------------------------------------------C 1
G---UA-----G*CAAGC--------------------------------------------C 1
U---AU-----U*ACAAU--------------------------------------------G 1
----GGUA---G*CAAA---------------------------------------------- 1
----UGAU---U*AUAU---------------------------------------------- 1
A---UGGG---U*AU-----------------------------------------------U 1
G---G------A*AACAA--------------------------------------------U 1
U---UG-----G*CAGC---------------------------------------------G 1
----AG-----A*UUAAU--------------------------------------------- 1
----AGA----G*CAAA---------------------------------------------- 1
----AUAA---G*CUC----------------------------------------------- 1
----AUAU---G*CUA----------------------------------------------- 1
----CAA----G*CAAC---------------------------------------------- 1
A---UAAG---G*C------------------------------------------------U 1
----A------G*CCAAC--------------------------------------------- 1
----U------G*CGUAG--------------------------------------------- 1
C---G--G---G*CA-----------------------------------------------G 1
U---A------A*UAG----------------------------------------------G 1
U---UG-----U*A---A--------------------------------------------A 1
----GAA----G*CU------------------------------------------------ 1
U---AA-----G*U------------------------------------------------G 1
Omitted sequenced and counts
------------*-------------------------------------------------- 5
----UUA----G*C------------------------------------------------- 1
----AU-----G*C------------------------------------------------- 1
----UG-----G*C------------------------------------------------- 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_18487.1
Basepair signature:
|
18.09 | -142.83 | 8 | 6 |
|
| 2 |
Motif group IL_90346.1
Basepair signature:
|
7.80 | -157.73 | 6 | 5 |
|
| 3 |
Motif group IL_11344.2
Basepair signature:
|
7.09 | -188.78 | 6 | 5 |
180 degree turn |
| 4 |
Motif group IL_89021.2
Basepair signature:
|
7.09 | -263.83 | 6 | 5 |
UAA/GAN |
| 5 |
Motif group IL_38507.2
Basepair signature:
|
6.74 | -268.20 | 6 | 4 |
UAA/GAN |
| 6 |
Motif group IL_61440.1
Basepair signature:
|
5.67 | -289.66 | 7 | 5 |
Triple sheared |
| 7 |
Motif group IL_38862.4
Basepair signature:
|
5.67 | -419.46 | 5 | 4.5 |
5x5 Sarcin-Ricin with intercalated A; G-bulge |
| 8 |
Motif group IL_17136.7
Basepair signature:
|
5.32 | -353.50 | 5 | 4 |
tSH-tWH-tHS |
| 9 |
Motif group IL_99498.1
Basepair signature:
|
4.96 | -139.31 | 7 | 5 |
|
| 10 |
Motif group IL_82292.1
Basepair signature:
|
4.61 | -136.02 | 7 | 5 |
|
Loop 25 Internal loop
Column numbers: 525-539, 562-568 - View nucleotides in PDB file(s)
Scored sequences and counts
U-------------A*U-----A 25
U-------------G*C-----A 12
A-------------G*C-----G 9
A-------------U*A-----U 9
U-------------U*A-----A 8
CUA-----------U*A---UAG 6
A-------------U*A----UG 5
GU------------A*G-----C 4
U-------------U*G-----U 4
AAU-----------U*A----GG 3
UAA-----------G*U----UA 3
AU------------G*U----AU 3
AU------------U*A----AU 3
GU------------A*U----AU 3
UA------------U*A----UA 3
C-------------G*C-----A 3
G-------------C*G-----C 3
UUUUGACCUA-AUAU*A-UUGGA 2
AAGA----------U*A----CA 2
AUGA----------C*G----GA 2
UA------------A*U----UA 2
A-------------C*G----CA 2
AA------------C*G-----G 2
A-------------C*G-----U 2
A-------------G*C-----A 2
A-------------G*U-----U 2
A-------------U*G-----U 2
C-------------U*A-----G 2
U-------------C*G-----A 2
UUUUGACCUAAUAAU*-AUUGGA 1
GUUGGG-----AU-G*GC----U 1
AUG-----------C*ACUCACU 1
AUA-----------U*A-UAUAA 1
AUAA----------A*U---UAU 1
CU------------G*C-UUUAU 1
UAAU----------A*G---UUA 1
AUGA----------U*G----GA 1
CUAA----------C*G----AG 1
GAAU----------G*U----UU 1
GUAA----------C*G----AC 1
UAA-----------A*U-GC--A 1
UGC-----------G*C---ACA 1
UGC-----------G*C---ACG 1
A-------------C*G--UAAA 1
AGA-----------C*G----CA 1
AUA-----------A*U----AU 1
C-------------U*AUAU--A 1
CA------------G*U---AUG 1
CAAA----------G*C-----C 1
CCU-----------U*A----UU 1
GAAA----------C*G-----U 1
GC------------U*G---UGC 1
GG------------C*G---UGC 1
UAA-----------U*A----GA 1
UUG-----------C*G----AA 1
A-------------C*G---UGA 1
A-------------U*A---UAA 1
AA------------G*C----UU 1
AC------------C*G----AG 1
AG------------A*U----UU 1
AG------------U*A----CG 1
AU------------A*U----AU 1
AU------------A*U----GU 1
AU------------U*A----AC 1
AU------------U*G----AU 1
C-------------U*A---GUG 1
CA------------G*C----AG 1
CA------------U*A----UG 1
CC------------A*U----GG 1
GU------------C*G----GC 1
GU------------G*C----AU 1
GU------------G*G----CA 1
UA------------U*G----UA 1
UAU-----------C*G-----A 1
UAU-----------U*A-----A 1
UC------------G*C----AA 1
UG------------U*A----UG 1
UU------------G*C----AA 1
UU------------U*A----UC 1
UU------------U*G----UG 1
-G------------A*U----UA 1
A-------------C*G----AU 1
CA------------G*U-----G 1
CU------------G*U-----A 1
G-------------U*A----GG 1
G-------------U*A----UG 1
GA------------A*U-----U 1
GC------------A*U-----A 1
GG------------C*G-----U 1
U-------------U*A----AG 1
U-------------U*G----GU 1
-A------------G*C----A- 1
A-------------A*U-----U 1
A-------------G*C-----U 1
A-------------U*A-----G 1
C-------------A*U-----G 1
C-------------U*A-----U 1
G-------------C*A-----C 1
G-------------G*U-----U 1
G-------------U*A-----U 1
G-------------U*G-----C 1
G-------------U*G-----U 1
U-------------G*C-----C 1
U-------------U*G-----A 1
Omitted sequenced and counts
--------------C*G-----A 36
--------------U*A------ 14
--------------C*G------ 7
---------------*------- 5
U-------------G*A------ 4
--------------U*A----UG 2
--------------G*U-----A 2
--------------U*G------ 2
--------------A*UAU---- 1
--------------C*G----AG 1
--------------U*A----UU 1
--------------C*G-----U 1
--------------G*C-----A 1
--------------G*C-----G 1
--------------G*U-----G 1
--------------U*A-----A 1
G-------------U*A------ 1
--------------A*U------ 1
--------------G*C------ 1
C--------------*------A 1
---------------*------A 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_31737.3
Basepair signature:
|
56.59 | -224.85 | 3 | 1 |
Stack and bulge |
| 2 |
Motif group IL_42771.1
Basepair signature:
|
56.10 | -277.13 | 3 | 1 |
Multiple bulged bases |
| 3 |
Motif group IL_84476.1
Basepair signature:
|
47.32 | -243.28 | 3 | 2 |
Multiple bulged bases |
| 4 |
Motif group IL_07039.3
Basepair signature:
|
45.85 | -201.36 | 3 | 1 |
Major groove platform |
| 5 |
Motif group IL_81831.1
Basepair signature:
|
45.37 | -254.06 | 4 | 1 |
Intercalated cWS |
| 6 |
Motif group IL_73452.2
Basepair signature:
|
40.98 | -253.83 | 4 | 1 |
|
| 7 |
Motif group IL_66635.5
Basepair signature:
|
40.49 | -262.42 | 3 | 1 |
Major groove intercalation |
| 8 |
Motif group IL_33761.2
Basepair signature:
|
39.02 | -267.19 | 4 | 1 |
|
| 9 |
Motif group IL_90729.1
Basepair signature:
|
39.02 | -269.17 | 2 | 1 |
Single stack bend |
| 10 |
Motif group IL_26793.1
Basepair signature:
|
37.56 | -273.72 | 3 | 1 |
Single stack bend |
Loop 26 Hairpin loop
Column numbers: 541-560 - View nucleotides in PDB file(s)
Scored sequences and counts
A----UUGGCGU-------U 20
UAU--GUAGCA------GUA 13
UGC--GUAGCA------GUA 12
G---GGUGAUAG-------C 10
GG--UUUGAGAC------CC 6
GU---GUGGCA-------AC 6
C----GUGAGAA-------A 6
U----GGGGAC--------A 6
GGU--GUGAGAG-----ACU 5
AG--CGUGAGAAA-----CU 4
GGU--GUGAAAG-----ACU 4
G---CGUCGAAAA------C 4
G----CUGGUGA-------C 4
G----GUGGAAG-------C 4
C----CCGCAA--------G 4
U----GUGGUA--------G 4
AAG--GCGGAAAA----CUU 3
AGG--CUGAUUA-----CCU 3
AUU--AGGGAU------AAU 3
CC--UGUGGUG-------GG 3
GU---GUGGCA-------GC 3
A-----GGGAUGC------U 3
G----CUGGUAA-------C 3
G----GUGGUG--------C 3
AG--CCUGAGAAA-----CU 2
UGC--GUAGCA------GCA 2
UGC--GUAGCG------GUA 2
GU---GUGAGAG------AC 2
CU---UUGGCA-------AG 2
G---CUUGGCCG-------C 2
G---GGUGGAAG-------C 2
G---UGUGGCAG-------C 2
GC---UUGGCC-------GC 2
A----UUGGCAU-------U 2
A----UUGGCUU-------U 2
C---UUUGCGG--------G 2
G----CUGGUUA-------C 2
G----UUGGUGA-------C 2
G----UUGGUUA-------C 2
U----GUGAGAG-------A 2
A----GUGGAA--------U 2
A----GUGGUG--------U 2
C----GUAGCA--------G 2
G----GUGGAA--------C 2
G----UGGGAG--------C 2
AGU-UAUGGGAAUA---GCU 1
G----GUGGAAUGUUACAGA 1
GUG-GGAGAUGAA----CGC 1
AUCUAGGGAUA------GAU 1
CGC--AUGAGAAC----GCG 1
AG--CGUGAGAGA-----CU 1
AGU--GUGAGAA-----GCU 1
AGU--GUGAGAG-----ACU 1
G----GUGGAAUGU---UAC 1
GAG-CUGGUAA------CUC 1
GG--CGUAGGAAA-----CC 1
GG--CGUCGAAAA-----CC 1
GG--CGUGAGAGA-----CC 1
GGU--GUGAGAG-----ACC 1
GGU--GUGAGAG-----GCU 1
GGU-GUGAGAG------ACU 1
GUU--GUGGCAU-----AAC 1
GUU--GUGGCAU-----GAC 1
UA--CCUGAAGAA-----UA 1
UAU-UAUGGUG------AUA 1
UG--CGUGAGAAA-----CA 1
-AG--CUGGUGC-----UUG 1
AG--GGUGAGAG------CU 1
AGU--GUGAGA------GCU 1
GAU--GUGGUA------GUC 1
GGC--GUGGUU------GUU 1
GUC--AGAGAU------GAU 1
UA---GUGGGAGC-----UA 1
UAU--GGGGAC------AUA 1
UAU--GGGGGC------AUA 1
UGG--GUGGAA------CCA 1
UGU--GUAGCA------ACA 1
A--UAGAGGUAU-------U 1
AA---UUGGUAA------CU 1
C--CCGUGGAAC-------G 1
G---CCUGAGAAA------C 1
G---CGUAGAAAA------C 1
G---CGUCGAAAC------C 1
G---CGUGAGAGA------C 1
G--AAUGAGAGA-------C 1
GU---GUGAGAGA------C 1
U---CGUCGAAA------AC 1
-----UUGGUACCCU----- 1
A---GGUGAUAG-------C 1
A---UGUGGUAG-------U 1
AU---GUGGCA-------AU 1
AU---UUGGCG-------AU 1
C---UGUGGCAA-------G 1
CU---GUGACA-------AG 1
G----UGUGGCAG------C 1
G---CGUGGCAA-------C 1
G---CUUGAUAA-------C 1
G---GGUGGUAG-------C 1
G---UGUGGCAA-------C 1
G---UUUGAGAC-------C 1
G---UUUGGUAC-------C 1
G--GGUGAUAG--------C 1
G-U--GUGGCA------G-C 1
GC---GUGGCA-------GC 1
GG---GUGACA-------CC 1
GG---GUGGAA-------CC 1
GG---GUGGUG-------CC 1
GU---AGGGAU-------AU 1
GU---GUGGAA-------AC 1
UC---GUAGCU-------GA 1
A-----GGGGUGC------U 1
A----CUAACGA-------C 1
A----CUGGUAA-------U 1
A----UUGGUCG-------U 1
A---UGUGGUG--------U 1
AG---GUGGUG--------C 1
C----CUGAGAA-------A 1
C----CUGCAAA-------G 1
C----GUGAUAG-------C 1
C----GUUGCAG-------G 1
C----UUGGUAA-------C 1
C---GUUGCAG--------G 1
C---UUUGCAG--------G 1
G----CUGGUGC-------U 1
G----GUGGAAU-------U 1
U----CCGCAAG-------A 1
U----GUAGCAA-------G 1
U----GUGAGAA-------A 1
U----GUGAGAA-------G 1
U----GUGGGAA-------A 1
U----UUGGUAC-------U 1
U---GUGAGAG--------A 1
U---UGUGGUG--------A 1
----GGUGGAAG-------- 1
A-----GGGAUA-------U 1
C----AGGGAU--------G 1
C----GUGGCU--------G 1
C----GUGGUA--------A 1
G----AUGGUG--------C 1
G----GUGACA--------C 1
G----GUGAGA--------C 1
G----GUGGCA--------C 1
G----UGGGUG--------C 1
U----AGGGAU--------A 1
U----AUGGGG--------A 1
U----GUAGCA--------G 1
U----GUGGCA--------A 1
U----UUGGCA--------G 1
-----CUGGUAA-------- 1
----UUUGGCA--------- 1
A-----GGGAU--------G 1
-----UUGGCA--------- 1
Omitted sequenced and counts
-------------------- 5
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_25061.1
Basepair signature:
|
24.91 | -37.93 | 5 | 4 |
|
| 2 |
Motif group HL_75293.5
Basepair signature:
|
17.19 | -57.87 | 5 | 4 |
|
| 3 |
Motif group HL_66853.7
Basepair signature:
|
17.19 | -68.27 | 5 | 4 |
|
| 4 |
Motif group HL_93135.1
Basepair signature:
|
17.19 | -78.93 | 7 | 5 |
Pseudoknot |
| 5 |
Motif group HL_06059.6
Basepair signature:
|
16.84 | -108.17 | 4 | 3 |
tRNA anticodon loop |
| 6 |
Motif group HL_29129.3
Basepair signature:
|
16.49 | -47.17 | 5 | 4 |
|
| 7 |
Motif group HL_38808.1
Basepair signature:
|
14.74 | -92.98 | 6 | 4 |
|
| 8 |
Motif group HL_87463.1
Basepair signature:
|
14.04 | -56.13 | 5 | 4 |
|
| 9 |
Motif group HL_16991.1
Basepair signature:
|
12.98 | -43.96 | 7 | 5 |
G-quadruplex fragment |
| 10 |
Motif group HL_50537.6
Basepair signature:
|
12.28 | -107.10 | 5 | 4 |
tRNA anticodon loop with synthetase |
Loop 27 Hairpin loop
Column numbers: 781-800 - View nucleotides in PDB file(s)
Scored sequences and counts
A----GAAA----------U 94
A----GGGA----------U 16
G----GAAA----------C 13
ACU--GAAU--------AAG 11
AA---GAAA---------UU 11
-----GAAA----------- 10
U----GAAA----------A 9
UA---GAAA---------UA 7
A----GCAA----------U 7
AG---GAAA---------UG 6
A----GACA----------U 6
C----GAAA----------G 6
GA---GAAA---------UC 5
UG---GAAA---------CA 5
G----GUAA----------C 5
GUA--GAAA--------UGC 4
GC---GAUCAAAA-----GC 3
CA---GAAA---------UG 3
UC---GUAA---------GU 3
U----UAAA----------A 3
-----GUAAU---------- 3
GCA--GAAA--------UAC 2
AA---GAAA---------CU 2
AA---GUGA---------UU 2
CA---GUAA---------UG 2
UA---GAAA---------UG 2
UG---GAAA---------CG 2
UG---GUGA---------CG 2
UU---GAAA---------AA 2
A----GAGA----------U 2
A----GUAA----------U 2
G----GUUU----------C 2
AAAUCAGCAGUUAA-GGUUU 1
G----GAAUUGAAAA----C 1
ACU--GAAUA-------AG- 1
AUA--GAAA--------UAU 1
U----GAAUAAAA------G 1
GCU--AUCA---------GC 1
UA---UAAAA--------UA 1
UGC--GAAA---------GC 1
UU---UAAAA--------GA 1
A----CUAAA--------GU 1
AC---GUAA---------GU 1
AG---UAAA---------AU 1
CG---GAAA---------CG 1
CG---GUAA---------CG 1
GA---GACA---------UC 1
GA---GGGA---------UC 1
GC---GAAA---------GC 1
UA---GUAA---------UA 1
UC---GCAA---------GA 1
UG---GACA---------CA 1
UG---GUAA---------CA 1
UG---GUGA---------CA 1
UG---GUGA---------UG 1
UU---GAAA---------GA 1
UU---GAAA---------UG 1
U----AGGAA---------A 1
A----GAUA----------U 1
A----GUGA----------U 1
C----GCAA----------G 1
C----GGAA----------G 1
C----GUAA----------G 1
G----ACAA----------C 1
G----GCAA----------C 1
U----GUAA----------G 1
-----GUGA----------- 1
Omitted sequenced and counts
-------------------- 3
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_50006.2
Basepair signature:
|
67.25 | -16.12 | 3 | 1 |
|
| 2 |
Motif group HL_04783.2
Basepair signature:
|
65.85 | -9.10 | 2 | 1 |
|
| 3 |
Motif group HL_75660.5
Basepair signature:
|
64.81 | -195.55 | 2 | 1 |
|
| 4 |
Motif group HL_52953.3
Basepair signature:
|
64.11 | -307.53 | 2 | 1 |
|
| 5 |
Motif group HL_38901.2
Basepair signature:
|
63.76 | -66.37 | 2 | 1 |
tRNA D-loop |
| 6 |
Motif group HL_65794.5
Basepair signature:
|
63.76 | -155.64 | 2 | 1 |
Pseudoknot geometry |
| 7 |
Motif group HL_37824.7
Basepair signature:
|
63.07 | -10.99 | 1 | 0 |
GNRA |
| 8 |
Motif group HL_82710.2
Basepair signature:
|
63.07 | -33.45 | 2 | 1 |
|
| 9 |
Motif group HL_56334.1
Basepair signature:
|
61.67 | -236.12 | 3 | 1 |
Mini UNCG |
| 10 |
Motif group HL_93535.1
Basepair signature:
|
59.93 | -41.60 | 3 | 1 |
|
Loop 28 Internal loop
Column numbers: 833-843, 974-983 - View nucleotides in PDB file(s)
Scored sequences and counts
CAAGUA----G*U----GAAAG 56
CGAGUA----G*U----GAAAG 45
AAAGUA----G*U----GAAAU 39
UUAGUA----G*U----GAAAA 24
C-----AACGG*UUGUU----G 11
CGAGUA----C*G----GAAAG 8
UAAGUA----G*U----GAAAG 7
UAAGUA----G*U----GAACA 7
UGAGUA----G*U----GAAAG 7
AGAGUA----G*U----GAAAU 6
CAAGUA----G*U----GAACG 5
GGAGUA----G*U----GAAAC 5
CAAGUA----C*G----GAAAG 4
UGAGUA----G*U----GAAAA 4
A-----UCUCG*UGAGA----U 4
U-------AAC*GGA------G 4
AAAGUA----G*U----AAAAU 3
CGAGUA----G*C----GAAAG 3
UUAGUA----G*U----GAAAG 3
AGAGUA----G*U----GAAUU 2
AUAGUA----G*U----GAAGU 2
AUGGUA----G*U----GACAU 2
CCAGUA----G*U----GAAAG 2
GUAGUA----G*C----GAGGC 2
AAAGUA----G*U----GAA-U 2
C-----ACUGG*CUGGU----G 2
U-----UUUUC*GAAAA----A 2
C-------AAC*GGA------G 2
AUAGUA----G*U----GAGGU 1
C----UCGCAG*UCGGA----G 1
CAAGUA----C*G----GAACG 1
CAAGUA----G*C----GAAAG 1
CAUGUA----G*U----GAAUG 1
CCAGUA----G*U----GAGGG 1
CCUGUA----G*U----GAAAG 1
CCUGUA----G*U----GAAGG 1
CGAGUA----A*U----GAAAG 1
CGAGUA----G*U----GGAAG 1
CGAUUA----G*U----GAAAG 1
CUGGUA----G*U----GAAAG 1
GUAGUA----G*C----GAAGC 1
UGAGUA----C*G----GAAAA 1
UUAGUA----G*U----GAACG 1
A-----GAUAG*UUAUU----U 1
C-----AACUG*UUGUU----G 1
C-----ACGAG*UGAGU----G 1
C-----UCAGG*UUUGA----G 1
GUAGUA----G*U----GAA-U 1
U-----ACUGG*CUGGU----G 1
U-----GCUGG*CUGGC----A 1
U-----GGUGG*UCGCC----A 1
C-----AUA-G*UAAAU----G 1
C-----AUA-G*UCAAU----G 1
C-----GUC-G*UUGAU----G 1
U------AACG*CGGA-----G 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_26307.2
Basepair signature:
|
86.21 | 51.60 | 2 | 1 |
7x6 Sarcin-Ricin; G-bulge |
| 2 |
Motif group IL_24254.1
Basepair signature:
|
85.52 | 12.21 | 6 | 2 |
7x6 Sarcin-Ricin with UU cWW pair; G-bulge |
| 3 |
Motif group IL_61286.1
Basepair signature:
|
82.41 | 2.49 | 5 | 2 |
8x6 Sarcin-Ricin with inserted A; G-bulge |
| 4 |
Motif group IL_41756.4
Basepair signature:
|
81.72 | 9.93 | 4 | 2 |
8x6 Sarcin-Ricin with inserted Y; G-bulge |
| 5 |
Motif group IL_04346.10
Basepair signature:
|
79.66 | -13.46 | 4 | 2 |
8x7 Sarcin-Ricin; G-bulge |
| 6 |
Motif group IL_47346.2
Basepair signature:
|
77.93 | -8.48 | 5 | 2 |
tSH-tSH-tHH-tHS |
| 7 |
Motif group IL_29198.2
Basepair signature:
|
64.48 | -11.69 | 5 | 3 |
7x7 Sarcin-Ricin with intercalated A; G-bulge |
| 8 |
Motif group IL_88269.4
Basepair signature:
|
44.14 | -12.89 | 3 | 3 |
6x5 Sarcin-Ricin; G-bulge |
| 9 |
Motif group IL_32016.1
Basepair signature:
|
37.59 | -16.45 | 5 | 4 |
Kink-turn |
| 10 |
Motif group IL_88116.2
Basepair signature:
|
32.76 | -20.06 | 5 | 4 |
|
Loop 29 Hairpin loop
Column numbers: 848-969 - View nucleotides in PDB file(s)
Scored sequences and counts
AAU--CCACCAGAUUAAAUUAUGAAUA---------------------------------------------------------------CCAAAUUCUGAAUG-----------------C 12
AAAU-GUGCAGAUAAAACAUUUGGAUAUGUUUAUGCUUAAAA------------------------------------------------UAUAUUUCUGAAUG-----------------U 6
AAUC-UUGGUUUACAAGAAUAUUCUUAAUUAUUUACUAGAAGA-----------------------------------------------AAAUAAUCUGAAUG-----------------A 5
GA---GACAGGUUCUGAGUCAGGAAAAAUAAGAUCACAGA--------------------------------------------------ACAAAUGCUGAAGAG----------------U 5
GA---GUGCGUAGAGGAACGAUUUCUACAGAUAACGAAGCUAACAGGAAAUU--------------------------------------AUUAGAUCUGAAAG-----------------A 4
GA---GACAGGUUCUGAGUCAGAAAAAGGAAGAUCACAGA--------------------------------------------------ACAAAUGCUGAAGAG----------------U 4
GA---GACAGUUCUAUAAUGACAAGAAGAUCGUCAGG-----------------------------------------------------AAAACUGCUGAAGAG----------------U 4
A-----GGCGAUUUUACAAAUCAAGAAUAAUUGGUAAU----------------------------------------------------UCUAAUGCUGAAUG-----------------A 4
AU---GACGGGUUUGAAGAUGAUCUUUUCUAUAUCAAAUAUGGAUUUUGUAAAAG-----------------------------------AAAAUUUCUGAAAG-----------------A 3
A----UACCAAAAGUUAUACUGGUCUUGAAAACCAGAGAUAGAAAA--------------------------------------------CAUUUUUCUGAAAG-----------------A 3
AAU--GUGCAGAUGAACGAUACUGAUAUUGUUAUGCUAAAAC------------------------------------------------AAAUAUUCUGAAUG-----------------U 3
AUC--GGCAAGAUUAAAUGAUACUAUUAGGUACAAUAUAUA--------------------------------------------------GAACGCACA---------------------U 3
AU---GGCAGUUUUAAAAAGCAAUCUUUCGAUACGAGCAUAUGAGAAUAAGGAAAUGCAAAUAGGCGAAA--------------------GCAUAAUCUGAAAG-----------------A 2
AG---GACAGUUUUGGUGUUUGAUCUUUAAUACGAUAUGAUGAAAAAGAAAUUGUAUGAAACUAUC------------------------AAAUUUUCUGAACG-----------------A 2
AGC--GUGUUCAGUUCUAAACUAGACUGGAAAGAUCCGCACAAGUAGAAUGCGAAAAACUCUA---------------------------UUUUUGACUGAAUG-----------------G 2
A----GGUAGUCAUAAUAGAAUGUAUAUUUUAAUUAAAACUACAUAUGAAAUUACAGUAUAUU---------------------------AAUGAUUCUGAAUG-----------------A 2
AG---CUACAGCAUAUUGACUAAUUAAUGGCUCGUGAAAGAGCGAAAUGAAAAGA-----------------------------------AAAUUUGCUGAAUG-----------------A 2
A----GGCUAGUCCAGACAAGAAAAAUUUGACGAACCUUAGAAUAGGUAAUUAAC-----------------------------------UUUUAUACGGAAC------------------G 2
AU---GGCAAGUUGAUGAAAAUAAAGCGAAUAGGUGUAAGAUGCAACUA-----------------------------------------UGAUAUUCUGAAAG-----------------A 2
AUC--UACGUUUGAAGAUAAUUCUUUCCGAAUGGCAUUUAUUCAAAAA------------------------------------------GAAAAAUCCGAAA------------------G 2
AAUC-UUGGUUUACAAGAAUAUUCUUAAUUAUUUGAUAGAAGA-----------------------------------------------AAAUAAUCUGAAUG-----------------A 2
AA---GUGUGCAGAGGAUUUACAAGAUAUAUUGUGCUAAAA-------------------------------------------------UAUUAAUCUGAAUG-----------------U 2
AAUU-GUGCAGAGAAUUUACAAGAUAUAUUGUGCUAAAA---------------------------------------------------UAUUAAUCUGAAUG-----------------U 2
GA---GACAGGUUCUGAGUCAGAAAAAGGAAGAUCACAGA--------------------------------------------------ACAAGUGCUGAAGAG----------------U 2
GA---GACAGGUUCUGAGUCAGGAGAAAUAAGAUCACAGA--------------------------------------------------ACAAAUGCUGAAGAG----------------U 2
GA---GACAGGUUCUGAGUCAGGAGAAAUAAGAUCACAGA--------------------------------------------------ACAAGUGCUGAAGAG----------------U 2
A----UACCAGAGUGUUGCUAGUUCUCGAAACUAGCUGGCU-------------------------------------------------CAAUUAUCUGAAAG-----------------A 2
AAA--CGUGGAAAUUACAAUACAGGUUUUUGCAUAA-----------------------------------------------------CCAUCAAUCGCAUUG-----------------U 2
AU---GGCAAAACAAAAUUUUUUUUGCAAAUCAAA-------------------------------------------------------AAAAAUUCCGAAAG-----------------A 2
AAUC-GACAAUCUUACAUUAACUGG----------------------------------------------------------------AACAUUGCACAUG-------------------U 2
AU---GGCAGUUACUACUCUACA-------------------------------------------------------------------ACCAUUUCUGAAUG-----------------G 2
AU---GGCAAUAAAUGAACUUU--------------------------------------------------------------------UACCUAAUUGAAUG-----------------G 2
AU---GGCAAUUCUACAA------------------------------------------------------------------------UCAAAUUCUGAAUG-----------------G 2
AU---GGCAAUUUU-----------------------------------------------------------------------------UACAAUCUGAAUG-----------------G 2
AU---GGCAGUUUCUUAAUAAAAUAAAGCUCAAAAAUUAUUCAUUAAGAAUAAAAAGAUAAUUCUAAUUUAAUUUUUGAUUUAAAACAUAUUUUUUUCUGAAUG-----------------A 1
AA---AGGCGAAAACUUUAAGGUAUUACAAAUAAUUGCUGUAACAAAGGUGAUUACUUCUGUAACGAACUUAAAGCAAGUAUAAU-----AAAUAUCCUGAAUGGU---------------A 1
AU---GGCACUAUGGUUUAAAAGCGGUGGUGCUGGGUCUUUUUCUAAUUUGAUACUUAAUUAAUUAUAUUUGGGCAAUUAAAAU------AUUAAAUCUGAAUGU----------------U 1
AUAC-GGCAGACAACAGAUUUAAAACAAAUAUUUAAAAACAAGUCUACUAAUAGGGGUUGUUUGUUUAAAAACAAGUUUUAA--------UUUAAUUCUGAAUG-----------------A 1
AA---UAAAGUCUACGCUUUAUUAACAAGUGCAAUUAUUUUGUUUAAGGUGAA-------ACAAACAAAUUACAGUUCCUAAAAAAG--GGAAAAUGUCUAUU------------------G 1
AACU-UACGCUAUGAUUAACAAAUUAACUUUUGUUCUAGUGCGAUAGAAAAAAGAGCAAUUACUGCAUACG------------AGAGUAUGAAAAUGUCUAUU------------------G 1
AAU--CAACGAUAAUUUUGAUGAAAUAAAGAAAAAUGGUUUUAAAAGGUAUUUUAAAAUAGAAAUAU---------------AAAAAUUAUUUAAUUCUGAAUA-----------------A 1
AAC--AAGGCAAAAAAGGGAAAAUCAGUACAUAUGUAAUUUUGGAAGUAUUAAAAGAAAACAAUACAAAGAA------------------AAAUUAUCUGAAUG-----------------A 1
A-----GGCGAAAGUUUAAUAAUUUGCUUAAAAAAGUAUCACAUUUAUAAAUUGACAAAUAACAAUCUAUAAAU----------------UUUACUUCUGAAAG-----------------A 1
A-----GGCGAAAGUUUGAUAAUUUGCUUAAAAAAGUAUCACAUUUAUAAAUUGACAAAUAACAAUCUAUAAAU----------------UUUACUUCUGAAAG-----------------A 1
A-----GGCGAAAGUUUGAUAAUUUGUUUAAAAAAGUAUCACAUUUAUAAAUUGACAAAUAA----------CAAUCUAUAAAU------UUUACUUCUGAAAG-----------------A 1
AAU--UUACGCUUCUAUUAACAAUUAUGAUUGCGUUUAGUGCGAAAAAAG------------------CAAUUUACUGUACACAAAAGGUGUAAAUGUCUAUC------------------G 1
AAU--CGACAUAAAUUUGAUUGGAUAAAAACAAUUCUUAUUAUGAUUAAAGAAUGAUUCUAAUAGGA-----------------------UAUUAAACUGAAUGACU--------------U 1
AU---GGCAAGUUCUUCAAUAAGCAGUUUUUCGAUGUUAGCAUAUGGAAUAAGGAAUGCAAGUAGAAAAAA-------------------ACAUGAUCUGAAAG-----------------A 1
AU---GGCAAGUUCUUCAAUAAGCAGUUUUUCGAUGUUAGCAUAUGGAAUAAGGAAUGCAAGUAGAAAAA--------------------ACAUGAUCUGAAAG-----------------A 1
AAU--GACAAGGCUGUAAUUCAAGUAAAUGUAAUUUCAAAUAUUGAUUUUAAUAGAAGAUUAAAAUUU----------------------UUACUUUGUGAAUU-----------------G 1
AUU-CUGCAAUCCCUUGGUUGGGAAGUGUUGUCCAUAUAGUUCAAGAUGGAGACAUGAAUACAAGAUUA-----------------------UAUUACUCUUG------------------U 1
A----GAGGAAUCAAAUGAGUAAAACAAGUAUUAUAGGUAAAUAUUAUGUU---------------------------------------UUUCUAUCUGAAUGAUUGUGCCUUGAAAAAGG 1
A----GGCAGUAGAAGAAUAAUUUUUUAAUUUAGAUAGUAAAUUCAGGUAAGUUUACAUAUCAAAUU-----------------------ACAACUUCUGAAUG-----------------G 1
AU---GACACAGCUCAAAUAUGAUACGUUGUGCAUGAGUUAUGAGUAAUAGUAACUGAUGAACCUUA-----------------------AAAAAUUCUGAAG------------------U 1
AU---GGCAAGUUCUUAAAUAAGCAAUUUCGAUAUGAGCAAUGCAAAAGGUGCAAAAUAGGCGAAA------------------------ACAUAAUCUGAAAG-----------------A 1
AU---GGCAAGUUCUUAAAUAAGCAAUUUCGAUAUGAGCAAUGCAAAGGGUGCAAAAUAGGCGAAA------------------------ACAUUAUCUGAAAG-----------------A 1
AU---GGCAAGUUCUUGAAUAAGCAAUUUCGAUAUAAGCAAUGAAAAGGGUGCAAAAUAGGCGAAA------------------------ACAUAAUCUGAAAG-----------------A 1
AUU-CUGCAACCCUCUUUAGGGUAUGUGUUAGCCAUAUUUUAGGAUGGAAACAUGAAUACAAGAUAU-------------------------AUUUACUCUUG------------------U 1
A----GGCAGUAGAAGAACAAGGUAUAUAAAGAGAACAUCAAAUUAUACAAGUAAGUUUGAGGUUG------------------------AUUAAUUCUGAAUG-----------------A 1
AAG--UGACGUGAGAUUAAUACAUAAAGAACAAAAAAAUUAAAUCUUAUUAUGAAUUUUCU-----------------------------UAAUACGCUGAAUGAC---------------A 1
AUAC-UGCAGCCCCUUGGGGUUUGUUGUCCAUAUAGUUUAAGAUGGAAACAUUGAAUCAAG---ACAU------------------------AUUUACUCUUG------------------U 1
AAG--UGACAACAAGUUCUUGGUAUUAGAACAAAUAGAAAAUAUUUGAUUUAUUAUUGAA------------------------------GAAUUUGCUGAAUGGU---------------U 1
AU---GACAGUAUUGGAACUUUUCUUUAUAAGUAAUAGCAAAUAUUAUGAAUUAAUGAAGAUU---------------------------UUAGAUGCUGAAUG-----------------A 1
AUA-CUGCAGCCCUUUUUGGGGUUUGUUGUCCAUAUAGUUUAAGAUGGAAACAUAUUACAAGAU----------------------------AUUUACUCUUG------------------U 1
AGC--GUGUUCAGUUUAUUUUUGACGCAGAUCAAAACAAGAUCAAUACACUAAGACUGAUU-----------------------------GGAAAAACUGAAUG-----------------G 1
AUA-CUGCAGCCCUUUUGGGGUUUGUUGUCCAUAUAGUUUAAGAUGGAAACAUAUUACAAGAU-----------------------------AUUUACUCUUG------------------U 1
AUUU-UGUACGAUGACAAAAAUACAGCGAGUUUAUAAUUAGGUAAUUAUAAAUAUAUGAAA-----------------------------CAUAUUGUGGAAC------------------U 1
A----GUCGAGAAUGAUACAAAUUAUCAAAAUAGAAAAAAUAUACAGGUUUUUGAUAAAACU----------------------------UAACAUUCUGAAUG-----------------G 1
A--GCGUGUUCAGUUCAAACUAGAAUGGAAAGAUCCGCACAAGUAGAAUGCGAAAAACUA------------------------------UUUUUGACUGAAUG-----------------G 1
AAG--UGACGUGAGAUUAAUACAUAAAGAACAAAAAAUUAAUUCUUAUUAUGAAUUUU--------------------------------UAAUACGCUGAAUGAC---------------A 1
AGC--GUGUUCAGUUCAAACUAGAAUGGAAAGAUCCGCACAAGUAGAAUGCGAAAAACUA------------------------------UUUUUGACUGAAUG-----------------G 1
AGU--CUACGCUUAUGUGAAAAACAAAUAAUUUUUUAAUGUUGGAGUACAUUAAACUUUA------------------------------AAUUAAGCUGAAUG-----------------G 1
AU---GGCAAGUUCUUAAUUUUCAAAAAAUGUUUUAAGAGGAUAAGAAAAAACAUUAUGCA-----------------------------AAACAUUCUGAAAG-----------------A 1
A----GACAAGACUCAGGAAUUAGAAUAUAAGUUACCAAGUUGAUAAAGGGUAUUUAAAAA-----------------------------UUCUAUGCCGUAAG-----------------G 1
A----GGUAGUCAUAAUAGAAUGUAUAUUUUAAUUAAGUACAUAUGAAAUUACAGUAUAUU-----------------------------AACGAUUCUGAAUG-----------------A 1
A----GACAAUUAAUUAUUCUAAUCAAAUUAUAGCUAUGGUCUAUAAGUACAAGAAUAUU------------------------------GGUCAUACUGAAUG-----------------A 1
AAG--CGCGAAGAAUUUCUAAUGUUUGAUUAAGAAUGGUAUUUUGAACCAUUAUUGCU--------------------------------GAAAACUCUGAAUG-----------------G 1
AGA--GUGUUCAGUUCAAACUAGACUGGAAAGAUUCGCAAGAAAUGCGAAUAAUACUA--------------------------------UUUUUGACUGAAUG-----------------G 1
AGC--GUGCGUACUUCAAACAUUUGAUAAGUGGUCCAUGUGAGAACAACAGGGAAACU--------------------------------UUCUUAGCUGAAUG-----------------G 1
AU---GGCAAGUUUUUGAUAAGCUAUUGCAGUGGACGUGAAAUCCAUUGAUGCAAAACA-------------------------------UAUUCUUCUGAAAG-----------------A 1
A----UGCUAAGACGAACAUGCAAAAAAUAAUAAUUCAAGAGGUGAAUUAAUUUUAUUU-------------------------------UGAUAUUCUGAAUG-----------------G 1
AAU--CUGCAAGAUUACAUGGAUAAUUAGGAUUAACAAGAAAAAAGGGUUUUUUAAAUU-------------------------------AAUGCUUCUAAC-------------------G 1
A----GUCAGUGUAGGUAUAAAAAAGAAUGUAUGCUAAUAGAGUAUAUGAUAACAAAA--------------------------------CUUAAUUCUGAAUG-----------------G 1
AA---GACGAAUAUUACUAAUAUCUUUAAUAUUAUUUAUUGGACAUAAUGAAAGAAG---------------------------------AAAUUUUCUGAAUG-----------------U 1
AAU--CGACAUUAAAAUAAAACACAUAUAAUAGAAGAAAUUUAUAAAACAAAAA------------------------------------AUCUUUUCUGAAUGAC---------------A 1
AGA--GUGUUCAGUUCAAACUAGACUGGAAAGAUCCGCAAGCAAUGCGAAUAACUA----------------------------------UUUUUGACUGAAUG-----------------G 1
AU---CGCAUUGACUUGAUAUGAUGAAGAGAUGGGCUGAAUAGUGUCAAUUUGGUCA---------------------------------AAACUUUCUGAAUA-----------------U 1
AG---CUACAGCAUAUUGACUAAUUUAAUGGCUCGUGAAAGAGCGAAACGAAAAGA----------------------------------AAAUUUGCUGAAUG-----------------A 1
AU---GGCAAGUUCUUAAUUCAAACAAAAUGUUUUAAAGGCGAUAAGAAAAACAUU----------------------------------AAAUUCUCUGAAAG-----------------A 1
-----AGGCAAAUUUUGAUACGUUUGAUAGUAAUAAUCAAAUUUAUUGAAUUCUAAC---------------------------------AAGAAAACUGAAUA-----------------A 1
-----AGGCGAAAUUUAAUUAAAAUUGAAAAGUAUCAAUUAACAUAUUAAAUUUACA---------------------------------AAUUAUUCUGAACG-----------------A 1
A-----GGCGUUCUUUUACAAAAUAUUAAUUGCUAAAUAUUUACUGAAAAAUAC---------------------------------UUAACAAGAACUGAAUG-----------------A 1
AAU--CGACAUUAAAAUAAAACACAUAUAAUAGAAGAAUUUAUAAACAAAAA--------------------------------------AUCUUUUCUGAAUGAC---------------A 1
AG---CUACAGCAUAUUGACUAAUAAAUGGCUCGUGAAAGAGCGAAACGAAAAGA-----------------------------------AAAUUUGCUGAAUG-----------------A 1
AG---CUACAGCAUAUUGACUAAUUAAUCGCUCGUGAAAGAGCGAAACGAAAAGA-----------------------------------AAAUUUGCUGAAUG-----------------A 1
AG---CUACAGCAUAUUGACUAAUUAAUGGCUCGUGAAAGAGCGAAACGAAAAGA-----------------------------------AAAUUUGCUGAAUG-----------------A 1
AG---CUACAGCAUAUUGACUAAUUAAUGGCUCGUGAAAGAGUGAAAUGAAAAGA-----------------------------------AAAUUUGCUGAAUG-----------------A 1
AU---GACGGGUGAGAAAUUUAUCUAUUUAACAAUUUUAAUAGUUUUGGUAAGUA-----------------------------------AAUUUAUCUGAAUA-----------------A 1
AU---GACGGGUGAGAAAUUUAUCUAUUUAACAAUUUUAAUAGUUUUGGUAAGUA-----------------------------------AAUUUAUCUGAAUG-----------------A 1
A----GACUAGAAUCAAUUCUUGAAUAUAUCUAAAGGGUAGAUAUGAUUAAAUAA-----------------------------------ACUAAUUCUGAAAA-----------------A 1
AUUGCUGCAGCAAUAGUGAGUAGAAGAACAAAGAUGCAUGAUCUUUGCUAU---------------------------------------AUGAAUUCUGAAU---G--------------U 1
GU---GACACACAAGCACAAAAGGUUAUAACGUUCGACUCGUUACUCGAAAAAGU-----------------------------------UAAUUUGCUGACG------------------U 1
A----AGCAAUGACUGUAGUAAUUUUACAAGUCAAAUGAUGAAGAUUUGAAGAA------------------------------------AAUAAUUCUGAAUG-----------------C 1
A----GGCUAGCUCAAACUAGAAAAAUUUGACGAACCUUAGAAUAGGUAAUUAAC-----------------------------------UUUUAUACGGAAC------------------G 1
A----UGCAGCAAUUUAUUUACAGAUGACAAAUAAUAAAAAUGGGACUCUUAU-------------------------------------GUAAAUGCUGAAUGU----------------U 1
AA--CGGCGUAUUGAUUAAUGGCUUUUUAACUUUUUAGUGACACUUGUUAUA--------------------------------------AAAAGUUCUGAAUU-----------------G 1
AAU--CUACAUAUACUGAGAGAAAAUGAUAGUAUACAAGGUCAAUGUAUAACAA------------------------------------UUUUUGCCUAAAG------------------- 1
AU---GGCAUGAUAAAAAUAAAGCGAAUAGGUGUAAGACAUAAGAUACAACUA-------------------------------------UGAUAUUCUGAAAG-----------------A 1
A----CGCCAAGACUUGAAGAAUCAAAUUUAGAUUGAUAUUCUAAAAAUAAAU-------------------------------------UAAUUUUCUGAAUA-----------------U 1
A----GAGGCGUAAUAUUUCUAAAAUAGUUGACAUUAAUUAUUGGGCAAAUGU-------------------------------------UAUUAAUCUGAAUG-----------------G 1
A----GGCUAGUCCAGACAAGAAAAUUUGACGAACCUUAGAAUAGGUAAUUAAC------------------------------------UUUUAUACGGAAC------------------G 1
A----GGCUUUCUUUAAGGAAAAGCUAUUCAAAAAUCUGAUGAAAAUGUUUUA-------------------------------------UCUUUUGGUGAAUU-----------------G 1
A----UACAGGGACAUAUGGUAAAAAGAAUAUUUUUGAAGAUUAUUAUUUUAC-------------------------------------UUCUUGUCUGAAUG-----------------G 1
AAU--CGCAGUGACAAAAUGAUAUUAGAAGAAAAUGUUUUAUUGAAGAACA---------------------------------------UCUUAUUCUGAAUA-----------------U 1
AGA--CAGCAAGUUCAAUGGAACAAUUCUAGAAAAGAAUUAUUGAUUGA-----------------------------------------UUAAUUGCUGAAUGGU---------------U 1
AU---GACAGUAUUGAAAACAAAUCUUUUCUUUGUAAUGUAUUAAAAAAAUU--------------------------------------UCAAAUGCUGAAUG-----------------A 1
UA---GGCGUUGAAGAGAAAAUAACUUUUGUUUGCGGACAAAAAAAAUGAUA--------------------------------------GGUUAUUCUGAAUG-----------------A 1
AAG--CGCAAAUAACAAGAUGAUGGAAGAUGAAAAUGGUCAGUAGUCUU-----------------------------------------UGAAUUUCUGAAAGU----------------A 1
AAU--CGCAAUGACACACAUUUUUUGAUGAUAUUUAGAAAAAUAUAAUGA----------------------------------------AAAAAUUCUGAAUA-----------------U 1
AAU--CUGCAACGAUUUUAACAGAUGAGUAUUUUAAUAUUUGGAAAUAUG----------------------------------------UAAUCUUCUGAAUA-----------------G 1
A----UGGAGAAAGUCUCAUCUUCCAGCUUGCGACAUCUGAUCAACCAUCG---------------------------------------CUUAUUGCCGGAAG-----------------A 1
AU---GACAGGAUGAAGAUUAUUCUAUUACAUAAUUGGUGUAAGAAAAUA----------------------------------------AAAAGUGCUGAAUA-----------------U 1
AUC--UACAUGUAAAACAAGAAAUUUUCUUAUGUUCCUUUUUGAACUAAA----------------------------------------AAGUUUUCCGAAA------------------G 1
AUC--UGCUAUAGAUAAAGAAAAUAAUGGAGCAGAACUCCCUAUAGUUUA----------------------------------------AAUUUUUCUGAAA------------------G 1
AUC--UGCUAUAGAUAAAGAAAAUAAUGGAGCAGAACUCCUUUUAAUUUA----------------------------------------AAUUUUUCUGAAAG------------------ 1
A----GGCAAUAAAAGAUUAUUUAUGAUAUUGAACAAUUAUCAAUGAAUA----------------------------------------AAACAAUCUGAAUG-----------------A 1
A----UGCCGAGCCAAAUGUUGAUAGCAAGCGAUAUAAGAACGCUAAAAA----------------------------------------ACAUUUGAUGAAAU-----------------G 1
AA--CCCGACAUUAUGAAUAAUUCUAUUAUAAUGGGUAUAAAAAUUAUU-----------------------------------------AUUACUUCUGAAA------------------G 1
AAC--CCGACAUUAUAAAUAAUUCUAUUAUAAUUGGUAUAAAGACUAUU-----------------------------------------AUUACUUCUGAAA------------------G 1
AAC--CCGACAUUAUGAAUAAUUCUAUUAUAAUGGGUAUAAAAAUUAUU-----------------------------------------AUUACUUCUGAAA------------------G 1
AU---GACGUUACGAAUUGAAGAUUUAGAUACAUGUUUUUUUGUAAUCC-----------------------------------------UAAAUUUCUGAAUG-----------------A 1
AUC--GAGAUAAUUACAGGAUAUUUAAAAGAUAUUAGCAAUUAUCUUA------------------------------------------CAAACAUCUGAAUG-----------------A 1
AUC--UACAAGAUAAAAUUAAGAGCAAAAAAGAGAGCAAAAAACUCAA------------------------------------------AUAAUAACUGAAUG-----------------G 1
AUC--UACGUUUGAAGAUAAUUCUUUCCGAAUGGCAUUUAUUCAAAAAG-----------------------------------------AAAAAAUCCGAAAG------------------ 1
A-----CGCGAGAGCAUUUUAGAAAAAUGAACUUGUUUGAAGAGUUUGGU---------------------------------------UUCAUAUGC-GAAUG-----------------G 1
AU---GGCAGCAAACAAAAAGUUUCCUCAAUAGAGUAUUGAGUUUUU-------------------------------------------AAAACAUCUGAAAG-----------------A 1
G----GGGCUAAAUUUGAUUUUUCGAGAGUUGUCGAAUUACAAGUUUG------------------------------------------AAAAAUUCUGAAUA-----------------A 1
AAA--GACAGUUUUUGAUAACUUAGAUAUAAAGUUGUAUAUUAUU---------------------------------------------CUAAAUGCUGAAUG-----------------G 1
AAU--CGACAUUGAAACUAUAUUUUACUAAUAGAUUAAAAAAAUA---------------------------------------------AUAAGUUCUGAAUG-----------------A 1
A----CACGAGAGCAGGUUGACCAAGAAGAUCAUAAUAUUUCUUAA--------------------------------------------UUCAACUCUGAACG-----------------U 1
AAA-CCCUGGAAAUUUUAAAAAGAUGUCAUUUAAACACUUAU------------------------------------------------UUAAAAUCUGAAUG----------------UC 1
AAA-CCCUGGAAAUUUUUUUGAUAUGUCAUUUACAUUUUAUA------------------------------------------------AAAAAAUCUGAAUG----------------UC 1
AAAAUGUGCAGACACUACAUUAGAAUGUAUUAAUGCUUAAAA------------------------------------------------UAUAUUUCUGAAUG-----------------U 1
AAAC-CCUGGAAAUUUUUUUGAUAUGUCAUUUACAUUUUAUA------------------------------------------------AAAAAAUCUGAAU----------------GUC 1
AU---GGCAUUUAUUAUAAAAUAAAAUCUUUCGAAUGAUUAUCGA---------------------------------------------AAAACUUCUGAAAG-----------------A 1
-AAACCCUGGAAAUUUUUUUAAUAUGUCAUUUACAUUUUAU-------------------------------------------------AAAAAAUCUGAAUG----------------UC 1
A-----GGCGAUUUUACAAAUCAAGAAUAAUUGGUAAUUCUAAUGC--------------------------------------------UGAAUGACUGAAUG-----------------A 1
A-----GGCGUUCUUUUACAAGAAUAUUUUUGGUAAAUAUUUUAAU--------------------------------------------GAAAAUGCUGAAUG-----------------A 1
A----GGCGAAGAAAUAAAUUUUAUAAGAGGAUUUAUAGAAAAUU---------------------------------------------AAUGAUAAUGAAUU-----------------G 1
AA---GUGUGCAGAUAAAACAUUUGGAUAUGUUUAUGCUUAAAA----------------------------------------------UAUAUUUCUGAAUG-----------------A 1
AAAA-GUGCAGACGAUACAUUAUUGUAUGUUAAUGCUUAAAA------------------------------------------------CAUAUUUCUGAAUG-----------------U 1
AAAC-CCUGGAAAUUUUUUUAAUAUGUCAUUUACAUUUUAU-------------------------------------------------AAAAAAUCUGAAU----------------GUC 1
AAAC-GUGCAGACGAUACAUUAGAAUGUAUUAAUGCUUAAAA------------------------------------------------UAUAUUUCUGAAUG-----------------U 1
AAAU-GUGCAGACGAUACAUUAGAAUGUAUUAAUGCUUAAAA------------------------------------------------UAUAUUUCUGAAUG-----------------U 1
AAAU-GUGCAGACGAUACAUUAUUGUAUGUUAAUGCUUAAAA------------------------------------------------UAUAUUUCUGAAUG-----------------U 1
AAAU-GUGCAGACGAUGCAUUAGGAUGUAUUAAUGCUUAAAA------------------------------------------------UAUAUUUCUGAAUG-----------------U 1
AAAU-GUGCAGAUAAAACAUUUAGAUAUGUUUAUGCUUAAAA------------------------------------------------UAUAUUUCUGAAUG-----------------U 1
AAAU-GUGCAGAUAAAACAUUUGGAUAUGUUUUUGCUUAAAA------------------------------------------------UAUAUUUCUGAAUG-----------------U 1
AAGU-GUGCAGACGAUACAUUAUAGUAUGUUAGUGCUUAAAA------------------------------------------------CAUAUUUCUGAAUG-----------------U 1
AAU--GUGCAGAUGAACGAUACUGAUAUUGUUAUGCUUAAAAC-----------------------------------------------AAAUAUUCUGAAUA-----------------U 1
AAU--GUGCAGAUGAACGAUACUGAUAUUGUUAUGCUUAAAAC-----------------------------------------------AAAUAUUCUGAAUG-----------------U 1
AU---GGCAUUACGAUCGAUAAAGAAAUCAAUGCAUGGUUGAUG----------------------------------------------UUUUCUUCUGAAAG-----------------A 1
UC---CCGAGCUCUUUUUAACCAACGUAAAAUUGGGAAAAAUGA----------------------------------------------GGCAAUUCUGAAAG-----------------A 1
A-----GACAAGAAAUUGGAUUAAAUAGAAAUAUUGAAAUUUG-----------------------------------------------AUUUCUGCUGAAUGGU---------------U 1
AA---GUGUGCAGAUAAAACAUUGGAUAUGUUUAUGCUUAAAA-----------------------------------------------UAUAUUUCUGAAUG-----------------U 1
AA---GUGUGCAGAUAAAACAUUUGGAUAUGUUAUGCUUAAAA-----------------------------------------------UAUAUUUCUGAAUG-----------------U 1
AAAC-CCUGGAAAUUUUAAAAAGAUGUCAUUUACACUUAU--------------------------------------------------UUAAAAUCUGAAU----------------GUC 1
AAAU-GUGCAGAUAAAACAUUGGAAAUGUUUAUGCUUAAAA-------------------------------------------------UCUAUUUCUGAAUG-----------------U 1
AAAU-GUGCAGAUAAAACAUUUGGAUAUGUUAUGCUUAAAA-------------------------------------------------UAUAUUUCUGAAUG-----------------U 1
AAC--CCGACUUUAUUACAAUAAUAUGAUCUAAUUUUAUUAUG-----------------------------------------------ACUAUUUCUGAAA------------------G 1
AAUU-GUGCAGAUAAAACAUUGGAUAUGUUUAUGCUUAAAA-------------------------------------------------UAUAUUUCUGAAUG-----------------U 1
AC---GCCGUGAUUUCACUUUGUUAAAUAGGCAAUAACUUAGA-----------------------------------------------UCUCACGCUGAAG------------------C 1
AU---GACGGGUGAGAAAUUUAUCUAUUUAAUAAUUCUAAUGA-----------------------------------------------UUUUGAUAAGUAA------------------A 1
GA---GACAGGUUCUGAGUCAGGAAAAAAUAAGAUCACAGA-------------------------------------------------ACAAAUGCUGAAGAG----------------U 1
GA---GACAGGUUCUGAGUCAGGAAAAAAUAAGAUCACAGA-------------------------------------------------ACAAGUGCUGAAGAG----------------U 1
AAAU-GUGCAGAAAAUUUGCAAGAUAUAUUGUGCUAAAA---------------------------------------------------UAUUAUUCUGAAUG-----------------U 1
AAC--CCUGGAAAUUUUAAAAAGAUGUCAUUUACACUUAU--------------------------------------------------UUAAAAUCUGAAUG-----------------U 1
AG---CUCUCGGUGAAGAACCGGUCUGUAUCAACCGCUAGAU------------------------------------------------ACUCAAGCUGAAG------------------U 1
AGU--CCGUACACAAUAUUUUAUUAUAAGACGAAUAAUAU--------------------------------------------------AUAAUAUCUGAAUG-----------------U 1
AU---CUACGUUGGAUAUAACGUUUACGUAUGGGUAAAAAAAUCUA------------------------------------------------UUAUGUGGU------------------G 1
AU---GUCGUAGUAUUGGUACUCUCUAAAAAUUAACUAGUAA------------------------------------------------CGAUCUGCUGAAG------------------C 1
GA---GACAGGUUCUGAAUCAGGAGAAAUAAGAUCACAGA--------------------------------------------------ACAAAUGCUGAAGAG----------------U 1
GA---GACAGGUUCUGAGUCAGGAAACAGAAGAUCACAGA--------------------------------------------------AUAAGUGCUGAAGAG----------------U 1
UA---GGCGUGAAAUGAUGAAACAGUAUGUUUAAAAUUGUU-------------------------------------------------UAAAAUUCUGAAUG-----------------A 1
A----GACAAUGACAUUUAGAAGAAAAGAUGCAAAAAUCUU-------------------------------------------------UACUAAUGUGAAUG-----------------A 1
AAU--CCGUGCAAAGAAUUUAUUUAAUUGGAUUAUAAUA---------------------------------------------------AUAAUUUCUGAAUG-----------------C 1
AAUC-GUGCAUAAAAUUACAAGAGAUAUUGUGCUAAAA----------------------------------------------------UAUUAUUCUGAAUA-----------------U 1
AU---GGCAGAAACAAAUAAUCAAGGCUCUGCAUGAACCA--------------------------------------------------AAACAUUCUGAAAG-----------------A 1
AC---GGCACGAUUUCAUUCUAACAAUUGUUGAGCACAA---------------------------------------------------CAACAUUCCGAAAG-----------------A 1
GA---GACAGGUUCUAUAAUGACAAGAAGAUCGUCAGG----------------------------------------------------AAAACUGCUGAAGAG----------------U 1
A----GACAAUGACUAAGAAGAAAAGAUGCAAAAAUCUU---------------------------------------------------UACUAAUGUGAAUG-----------------A 1
A----GGCAAACAAACAGAUAAUUAUAUGAAAGCAUAUCAU-------------------------------------------------AACAAAUCUGUAU------------------- 1
AGU--CCGUACAAAUUUCUUAUUAUAAGUCGAAUAAU-----------------------------------------------------AAUAAAUCUGAAUG-----------------U 1
AGU--CCGUACAAAUUUCUUAUUAUAGAGUGAAUAAU-----------------------------------------------------AAUAAAUCUGAAUG-----------------U 1
A----AGCAAGGACUCUUGUAAAAAAGAAAUUACUAAG----------------------------------------------------GAAAUUUCUGAAUG-----------------G 1
AA--UGCGCAGAUAAAA-UCAGACCAAUAUGCUAAAU-----------------------------------------------------UGAUUAUCUGAAUG-----------------U 1
A---GUGCAUUUCAGAAGGUUUCACAGUCAAUGAAA------------------------------------------------------AUAUGUUCUGAAUG-----------------G 1
AAG--UUGGAAUAUAUUAGAAGAUAUUAUAAGAU--------------------------------------------------------UGAUAUGCUGAAUG-----------------G 1
AAG--CCGUGCAAAUUUCUUAAUUGGAUUAUAA---------------------------------------------------------UUAUAUUCUGAAUG-----------------C 1
AU---GGCAAAACAAAAUUUUUUUGCAAAUCAAA--------------------------------------------------------AAAACUUCCGAAAG-----------------A 1
AU---GGCAAAACAAAAUUUUUUUGCAAAUCAA---------------------------------------------------------AAAACUUCCGAAAG-----------------A 1
AAUC-GACAAUCUUAUAUUAACAGAAAUA------------------------------------------------------------UGGACAUUACACAUG-----------------U 1
AU---GCCGAAAUAUUAGCUUAUAUGAGAUAAG---------------------------------------------------------AUUUUUGCUGAAG------------------C 1
A----UACCUGGUUGCGCAUACCAUAAAAAUG----------------------------------------------------------CAUUUAUCUGAAAG-----------------A 1
A---CACCGGAUAGUAGUUUCUAGUAAAUGAU----------------------------------------------------------GAUCCUGCUGAAG------------------C 1
AC---GCCGAAAAAAAGAAAUCCUUAACCCGU----------------------------------------------------------UUUUUCGCUGAAG------------------C 1
AU---GUCAACGUUCAGUUUAUGGAGUAUAAA----------------------------------------------------------AAGAUCGCUGAAG------------------C 1
AAG--GACUAGAAUAUUAGAAAAUAAUAA-------------------------------------------------------------AGCUUUUCUGAAAA-----------------A 1
A----GAGUAGAUAUAUGGCAAGAAUUAUA------------------------------------------------------------CAUUUAUCUGAACG-----------------G 1
AUC--CCUUGUGAAGAUAAAACACAUUGG-------------------------------------------------------------UUAAAAUCUGAACG------------------ 1
AUC--CGCGACAUAUAAGAUCACUCCUUU-------------------------------------------------------------UAUGUAGCUGAAG------------------C 1
AU---GGCAAAUGUUUGGUUGGCAAAA---------------------------------------------------------------AACAAAUCUGAACG-----------------A 1
AU---GGCAUCCUUAACGGGACAGAA----------------------------------------------------------------UGAUGAUCUGAAUG-----------------G 1
A----GGCGAGAAGAAUUAAAGAAUU----------------------------------------------------------------AAUAGUAAUGAAUU-----------------G 1
AAG--UUGGAAUAUAUUAGAAGAU------------------------------------------------------------------UAAUAUGCUGAAUG-----------------G 1
AU---GACGGGUUUUUGAAAAAUCA-----------------------------------------------------------------AAACUAUCUGAAUG-----------------G 1
AAC--UUGGAUAUAUUAGAAGAU-------------------------------------------------------------------UAAUAUGCUGAAUG-----------------G 1
AAUC-CGCACAAAAUUAAAAA--------------------------------------------------------------------CAAUUUUGCUGAAUG-----------------G 1
A----GAGGCAGUUUACAAUAACU-------------------------------------------------------------------AUUGGUGUG---------------------U 1
A----GAGGCAGUUUACGAUAACU-------------------------------------------------------------------AUUGGUGUG---------------------U 1
A----GGCGAGAAAAAUU------------------------------------------------------------------------AAUGAUAAUGAAUU-----------------G 1
A----GGCGAGAAAGAUU------------------------------------------------------------------------AAUGAUAAUGAAUU-----------------G 1
AAU--CGUGAAACAA---------------------------------------------------------------------------AAUUUUGCUGAAAG-----------------U 1
AAU--CGUGAAACA----------------------------------------------------------------------------AAAUUUGCUGAAAG-----------------U 1
No Matches Found
View All Results for this LoopLoop 30 Internal loop
Column numbers: 987-989, 1021-1022 - View nucleotides in PDB file(s)
Scored sequences and counts
G-A*GC 33
U-G*AC 29
C-A*GU 28
U-G*AU 24
G-G*CU 20
G-A*CU 17
C-G*GC 15
G-A*CC 15
U-U*GU 12
C-G*GU 11
C-A*GC 10
U-G*GC 8
G-U*CU 7
U-A*AU 7
U-G*GU 6
A-A*UC 3
A-C*UU 3
A-G*UU 3
A-U*UC 3
U-U*GC 3
A-A*UG 2
C-U*GG 2
C-U*GU 2
G-A*CA 2
G-G*CC 2
G-G*GC 2
G-G*UC 2
G-U*GC 2
U-G*AG 2
U-U*AU 2
AAA*UC 1
AAG*UC 1
AGA*UC 1
GUG*GC 1
UUU*AC 1
A-A*UU 1
A-G*UC 1
A-U*UU 1
C-U*GC 1
C-U*UC 1
G-A*UC 1
G-A*UU 1
U-U*AC 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_07039.3
Basepair signature:
|
38.28 | -6.83 | 3 | 1 |
Major groove platform |
| 2 |
Motif group IL_84476.1
Basepair signature:
|
30.69 | -18.14 | 3 | 2 |
Multiple bulged bases |
| 3 |
Motif group IL_42771.1
Basepair signature:
|
14.48 | -25.37 | 3 | 1 |
Multiple bulged bases |
| 4 |
Motif group IL_81831.1
Basepair signature:
|
12.07 | -26.63 | 3 | 1 |
Intercalated cWS |
| 5 |
Motif group IL_73452.2
Basepair signature:
|
11.38 | -26.57 | 3 | 1 |
|
| 6 |
Motif group IL_00225.13
Basepair signature:
|
9.66 | -38.42 | 2 | 1 |
Single bulged G |
| 7 |
Motif group IL_33761.2
Basepair signature:
|
8.28 | -32.52 | 3 | 1 |
|
| 8 |
Motif group IL_66635.5
Basepair signature:
|
3.10 | -32.54 | 2 | 1 |
Major groove intercalation |
| 9 |
Motif group IL_26793.1
Basepair signature:
|
3.10 | -34.97 | 3 | 1 |
Single stack bend |
| 10 |
Motif group IL_90729.1
Basepair signature:
|
3.10 | -38.77 | 2 | 1 |
Single stack bend |
Loop 31 Internal loop
Column numbers: 989-990, 1019-1021 - View nucleotides in PDB file(s)
Scored sequences and counts
GG*C-A 47
GG*C-G 36
AC*U-G 33
AG*U-G 32
AG*U-C 24
UG*A-G 18
GG*C-C 11
GA*C-C 10
UG*AAC 7
AG*U-A 7
AG*U-U 6
GA*C-A 6
AA*U-C 5
GA*C-G 4
AU*UGC 3
UG*AGU 3
AA*U-G 3
AA*U-U 3
CG*G-U 3
GA*C-U 3
UC*A-G 3
GG*C-U 2
GU*C-A 2
GU*C-G 2
UG*A-A 2
AG*UAG 1
AG*UCU 1
AU*UAC 1
GA*CUU 1
GG*CAC 1
GG*CAG 1
AA*C-C 1
AG*C-G 1
AU*U-G 1
GG*U-U 1
UA*A-U 1
UA*G-A 1
UC*A-A 1
UC*G-G 1
UG*G-U 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_07039.3
Basepair signature:
|
53.79 | 3.63 | 3 | 1 |
Major groove platform |
| 2 |
Motif group IL_84476.1
Basepair signature:
|
30.00 | -14.42 | 3 | 2 |
Multiple bulged bases |
| 3 |
Motif group IL_66635.5
Basepair signature:
|
16.90 | -18.71 | 2 | 1 |
Major groove intercalation |
| 4 |
Motif group IL_33761.2
Basepair signature:
|
14.83 | -22.22 | 3 | 1 |
|
| 5 |
Motif group IL_00225.13
Basepair signature:
|
13.10 | -27.20 | 2 | 1 |
Single bulged G |
| 6 |
Motif group IL_42771.1
Basepair signature:
|
12.76 | -15.88 | 3 | 1 |
Multiple bulged bases |
| 7 |
Motif group IL_81831.1
Basepair signature:
|
11.72 | -18.35 | 4 | 1 |
Intercalated cWS |
| 8 |
Motif group IL_90729.1
Basepair signature:
|
11.38 | -29.29 | 2 | 1 |
Single stack bend |
| 9 |
Motif group IL_73452.2
Basepair signature:
|
9.66 | -19.59 | 3 | 1 |
|
| 10 |
Motif group IL_26793.1
Basepair signature:
|
9.31 | -26.66 | 3 | 1 |
Single stack bend |
Loop 32 Hairpin loop
Column numbers: 991-1018 - View nucleotides in PDB file(s)
Scored sequences and counts
G-------UA-A--CCAGU-------CG 30
G-------UA----UCAAU-------CC 21
G-------UA-A--UCAAU-------CC 19
G-------UG----AAAUU-------CC 12
G-------UA----UCAAU-------CU 8
G-------UA-A----AGU-------CC 7
G-------UA-A--CCAUU-------CC 6
G-------UA-A--ACAAU-------CC 5
G-------UA-A--GCAAU-------CC 5
C-------UG----CUAGU-------GU 5
GU------UA-AAUUCGCU------CCC 4
G-------UA-AAGGUAAU-------CC 4
G-------UA-A--GCAUU-------CC 4
G-------UA-A--UCAAC-------CC 4
G-------UA-A--UCAGU-------CC 4
G-------UA----UUAUU-------CC 4
G-------UU----UCAAG-------CC 4
G-------UA-A----AAU-------CC 4
G-------UA-A----AUU-------CC 4
G-------UAGC--AAAAU-------CU 3
A-------UA-A--CCAAU-------UC 3
G-------UA-A--ACAGU-------CU 3
G-------UA-A--CCAAU-------CC 3
G-------UA-A--CCAAU-------CU 3
G-------UA-A--UCAUU-------CC 3
G-------UA-G--CCAAU-------CC 3
G-------UA-G--CCAUU-------CC 3
G-------UA----UCAUU-------CC 3
G-------UACAAAAUAAU-------CC 2
AG------GA-A--AAGAU------CUA 2
A-------UA-A--CCAAU-------UA 2
A-------UA-A--CCACU-------UC 2
G-------CA-A--UCAAU-------CC 2
G-------GA-A--CCUAU-------CC 2
G-------UA-A--CCAAU-------CG 2
G-------UA-A--CCAGU-------CC 2
G-------UA-A--UCAGU-------CG 2
G-------UA-A--UCAUU-------CU 2
G-------UA-G--AAAGU-------CC 2
G-------UA-G--UCAAU-------CC 2
C-------UG----CCAAU-------GA 2
C-------UG----CUGGU-------GC 2
G-------CA----UCAAU-------CC 2
G-------CA----UUAAU-------CU 2
G-------UG----AAGUU-------CC 2
G-------UG----AUAUU-------CC 2
G----------A--UAAAU-------CC 2
G-------UAAA-----UC-------CC 2
AAUACAAAUACA--AUCUA-UUUGAUUC 1
G-------UAAAAAUUAAUU------CC 1
GA------UAAU-CUAAAC------UCC 1
G-------UAUGAAAAAUC-------CC 1
G-----UAUAAA--AGAAU-------CC 1
GA------UAAU--CGAGU------UCU 1
GA------UAAU--UAAAU------UCU 1
GA------UUAU--GCAAG------UCU 1
GG------UAAU--UUAGU------CCU 1
AG------GA-A--AAGGU------CUA 1
G-------UA-AAAAGAAU-------CU 1
G-------UA-AUCUGAGU-------CC 1
G-------UAAU-UCCAAU-------CC 1
G-------UAGA-AAGAGC-------CC 1
GC------CA-G--UAGAG------CUA 1
GG------UA-G--ACAUU------CCC 1
CG------UG-A--CCAAU------C-C 1
G-------UACA--UGAAU-------CC 1
G-------UAGA--CGAAU-------CU 1
A-------AA-A--CCAAU-------UG 1
A-------UA-A--UCAAU-------UU 1
G-------AA-A--CUAAU-------CC 1
G-------CA-A--CCAAU-------CC 1
G-------CA-C--UAAAU-------CU 1
G-------UA-A--ACAAC-------CC 1
G-------UA-A--ACAGU-------CG 1
G-------UA-A--CCAUC-------CC 1
G-------UA-A--CCAUU-------CG 1
G-------UA-A--GCAGU-------CC 1
G-------UA-A--UCAAU-------CU 1
G-------UA-A--UCAGC-------CC 1
G-------UA-A--UGAAU-------CC 1
G-------UA-C--UCAAU-------CC 1
G-------UA-C--UCAUU-------CC 1
G-------UA-G--ACAAU-------CC 1
G-------UA-G--ACAAU-------CU 1
G-------UA-G--UAAAU-------CC 1
G-------UA-G--UCAAU-------CU 1
G-------UA-G--UCAUU-------CC 1
G-------UA-G--UCAUU-------CU 1
G-------UA-G--UUAGC-------CC 1
G-------UC-G--CCAAG-------CC 1
G-------UC-G--CCGAG-------CC 1
G-------UC-G--CCGUG-------UC 1
G-------UC-G--UCGAG-------CC 1
G-------UG-A--AGAAU-------CU 1
G-------UU-G--CCAUG-------CC 1
G-------UU-U--ACAAU-------CU 1
A-------GA-G--A-GAU-------UU 1
C-------GA----AAGAU-------GU 1
C-------GA----AGGAU-------GU 1
C-------GA----GAGAU-------GU 1
G-------CA----UCAAU-------CU 1
G-------UA----CCAAU-------CC 1
G-------UA----GCAAU-------CC 1
G-------UA----UCAAC-------CC 1
G-------UA----UUAGU-------CC 1
G-------UA----UUGAU-------CA 1
G-------UC----ACAAU-------CC 1
G-------UC----ACAGU-------CC 1
G-------UG----ACAUU-------CC 1
G-------UU----CUAAU-------CU 1
G-------UU----UCGUU-------CC 1
U-------UA----GCAGU-------AG 1
U-------UG----UUGAU-------AC 1
C-------CA-----UCGC-------GA 1
G-------UA-A----AUC-------CC 1
G-------UG-A----AAU-------CC 1
--------GACA---------------C 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_67079.1
Basepair signature:
|
29.31 | -33.25 | 5 | 5 |
|
| 2 |
Motif group HL_68257.1
Basepair signature:
|
24.83 | -31.37 | 6 | 4 |
|
| 3 |
Motif group HL_02887.3
Basepair signature:
|
22.41 | -54.68 | 5 | 4 |
T-loop with 3 stacked bulged bases |
| 4 |
Motif group HL_98864.1
Basepair signature:
|
19.31 | -54.40 | 4 | 4 |
T-loop with unstacked turn |
| 5 |
Motif group HL_25847.2
Basepair signature:
|
13.79 | -82.67 | 5 | 4 |
|
| 6 |
Motif group HL_86012.1
Basepair signature:
|
11.72 | -76.69 | 4 | 4 |
T-loop with unstacked turn |
| 7 |
Motif group HL_77600.2
Basepair signature:
|
11.72 | -311.14 | 3 | 3 |
|
| 8 |
Motif group HL_18423.1
Basepair signature:
|
11.03 | -67.13 | 6 | 5 |
|
| 9 |
Motif group HL_88558.1
Basepair signature:
|
10.69 | -98.62 | 7 | 5 |
|
| 10 |
Motif group HL_61996.2
Basepair signature:
|
10.34 | -90.59 | 4 | 4 |
|
Loop 33 3-way junction loop
Column numbers: 1026-1027, 1134-1139, 1250-1251 - View nucleotides in PDB file(s)
Scored sequences and counts
AG*CU--AG*CU 22
GU*----UC*GC 21
GG*C---UG*CC 19
UC*G----A*GA 11
AG*C----G*CU 10
GG*C----A*CC 9
UG*GG--UU*CA 6
AG*C---UG*CU 6
AG*U---UG*CU 6
AG*----AG*CU 6
GG*U----G*CC 5
AG*U---GG*CU 4
CU*U---CG*GG 4
GG*U---GG*CC 4
GC*----CC*GC 4
GC*----UC*GC 4
AG*G---UG*CU 3
GA*C---CA*UC 3
UU*C---CC*AA 3
AA*----GC*UU 3
GG*C----G*CC 3
AC*G---AU*GU 2
AG*C---UA*CU 2
GG*C---AG*CC 2
GG*C---GG*CC 2
UA*A---UU*UA 2
AG*----UU*CU 2
AG*U----A*CU 2
CA*U----A*UG 2
CG*U----U*CG 2
GG*----AC*CC 2
UG*----AG*CA 2
UG*----CG*CA 2
UU*C----C*AA 2
AG*UGUCUA*CU 1
UU*CCUUCA*AA 1
AG*CC--AG*CU 1
GU*CU--AG*GC 1
UG*UC--UU*CU 1
AA*C---UA*UU 1
AC*A---AC*GU 1
AC*A---UA*GU 1
AG*A---UA*CU 1
AG*A---UG*CU 1
AG*C---AA*CU 1
AG*C---AG*CU 1
AG*C---CC*CU 1
AG*C---GG*CU 1
AG*C---UC*CU 1
AG*C---UU*CU 1
AG*U---AG*CU 1
AG*U---CU*CU 1
AG*U---UA*CU 1
CA*A---UA*UG 1
CA*U---GG*UG 1
GA*C---GG*UC 1
GC*U---GA*GC 1
GG*A---UA*CC 1
GG*A---UG*CC 1
GG*A---UG*CU 1
GG*C---GG*CU 1
GG*C---UG*CU 1
GG*C---UU*CC 1
GG*U---UA*CC 1
GG*UU---A*CC 1
GU*U---UG*GC 1
UA*G---UU*UA 1
UC*A---GA*GA 1
UC*A---UU*GA 1
UG*A---CU*CA 1
UG*C---AG*CA 1
UG*C---UU*CA 1
UU*A---UU*AA 1
UU*A---UU*GA 1
UU*C---GG*AA 1
AA*----AC*UU 1
AA*C----G*CU 1
AG*A----A*CU 1
AG*C----C*CU 1
AG*U----G*CU 1
AG*U----U*CU 1
AU*C----A*AU 1
CA*G----A*UG 1
CC*C----C*AG 1
CU*----UU*AG 1
GA*U----G*UC 1
GC*----AC*GC 1
GC*----UU*GC 1
GU*----CC*AC 1
GU*----UA*GC 1
GU*A----U*AC 1
GU*C----G*AC 1
UA*C----G*UA 1
UA*U----U*UA 1
UG*----AA*CA 1
UG*----UA*CA 1
UG*U----U*CA 1
UG*U----U*UA 1
Omitted sequenced and counts
UG*-----G*CA 18
AU*-----U*AU 7
UG*-----A*CA 5
GG*-----G*CC 3
AC*-----G*GU 2
AU*-----U*GU 1
GC*-----A*GC 1
UA*-----G*UA 1
UC*-----G*GA 1
UG*-----G*CG 1
AA*------*UU 1
AC*------*GU 1
CG*------*CG 1
GC*------*GC 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group J3_07845.1
Basepair signature:
|
80.08 | 13.01 | 4 | 1 |
|
| 2 |
Motif group J3_41486.2
Basepair signature:
|
18.29 | -22.83 | 4 | 2 |
|
| 3 |
Motif group J3_30478.1
Basepair signature:
|
12.20 | -59.52 | 5 | 2 |
|
| 4 |
Motif group J3_30104.1
Basepair signature:
|
10.16 | -65.22 | 4 | 2 |
|
| 5 |
Motif group J3_56052.5
Basepair signature:
|
8.94 | -72.21 | 5 | 2 |
|
| 6 |
Motif group J3_75962.2
Basepair signature:
|
8.94 | -110.39 | 6 | 2 |
|
| 7 |
Motif group J3_11375.2
Basepair signature:
|
0.41 | -131.71 | 7 | 3 |
|
Loop 34 Internal loop
Column numbers: 1027-1060, 1133-1134 - View nucleotides in PDB file(s)
Scored sequences and counts
GCUUCGU--------------------------G*UC 23
CUUAA----------------------------C*AG 11
GCAUUG---------------------------G*CC 6
GUUUAU---------------------------G*AC 6
GAAAAUG--------------------------G*GC 5
GCAUACG--------------------------G*GC 4
GCGUAG---------------------------C*UG 4
GCUUGG---------------------------A*AU 4
ACUUCGGUA------------------------G*CC 3
UCAACGG--------------------------G*GU 3
GAUU-----------------------------G*UU 3
GCUU-----------------------------G*UU 3
GUUUUAGG-------------------------U*GA 2
GCAUUGG--------------------------G*CC 2
ACAAGG---------------------------U*AA 2
CAAUUG---------------------------C*AG 2
GAAAUG---------------------------G*GC 2
GAAUUG---------------------------G*GC 2
GACCAG---------------------------C*GG 2
UCUUGA---------------------------U*CA 2
GCAAG----------------------------G*CU 2
GCUUG----------------------------G*AU 2
GGUUU----------------------------G*CU 2
GUUUA----------------------------G*CC 2
GUUUU----------------------------G*CC 2
GCAUUGUGCGAAUGUAUGCUGUU--CUUAAGUGG*GC 1
GCAUUGUGCGAAUGUGUGCUGUU--CUGAUAUGG*GC 1
GUUUGUGA--UGUGUGGUAUAAUUCCAUAUA--A*GU 1
GUUUU-----UAGUGUUGUU-----GCACUAUUG*AC 1
CAA-------AGAUAUGAAGA----AUAUCUAAG*UU 1
GAUUAA----AGGU--GAAGA------ACCUGUG*GU 1
GUAUUAGUGUUUCGUCGC---------------U*UA 1
GCAAGUGUACA----------------------G*GU 1
GCAAGUCG-------------------------G*UU 1
GCAAUACG-------------------------G*UC 1
GCAUUGCG-------------------------G*CC 1
GUAAGUGU-------------------------A*GU 1
UGUUCGUU-------------------------G*CC 1
ACUAAGA--------------------------C*AG 1
ACUAUGC--------------------------G*CC 1
ACUAUGU--------------------------U*CA 1
AUCAUAG--------------------------G*AC 1
GACGAUG--------------------------G*GC 1
GAUUUUG--------------------------G*AC 1
GCAUCGU--------------------------G*GC 1
GCGUAGCA--------------------------*AG 1
GCUAAGG--------------------------G*AU 1
GCUAUGU--------------------------A*CU 1
GCUUUGU--------------------------G*CC 1
GGGAUAU--------------------------G*GU 1
GUUUGAC--------------------------G*GC 1
GUUUUAU--------------------------G*UC 1
UCUAUGG--------------------------G*AU 1
ACAGAG---------------------------A*GU 1
ACGUAG---------------------------G*CC 1
ACUAGG---------------------------C*AG 1
ACUAUG---------------------------U*AU 1
ACUUAG---------------------------A*CU 1
ACUUGU---------------------------G*AC 1
CAAUUA---------------------------U*AA 1
CCUAGG---------------------------U*CA 1
CCUCGG---------------------------U*UA 1
CGUUUC---------------------------G*AC 1
CUUAAC---------------------------U*UA 1
GACAGU---------------------------G*CU 1
GACCAG---------------------------U*GG 1
GACUAG---------------------------U*GA 1
GAGCUG---------------------------G*GC 1
GAUGUG---------------------------G*AC 1
GAUUCU---------------------------G*CC 1
GAUUUG---------------------------A*AU 1
GCAAGG---------------------------G*GC 1
GCAUAG---------------------------G*CC 1
GCGGAG---------------------------A*GU 1
GCGGUG---------------------------U*CA 1
GCGUAG---------------------------C*AG 1
GCUCUG---------------------------A*CU 1
GCUUCG---------------------------U*CU 1
GCUUGG---------------------------G*AC 1
GCUUGG---------------------------G*AU 1
GCUUGU---------------------------G*CC 1
GCUUUG---------------------------A*CU 1
GGUUCG---------------------------G*AC 1
GGUUUG---------------------------G*AC 1
GUAUAU---------------------------U*CA 1
GUGUCA---------------------------G*CC 1
GUUCUG---------------------------G*UC 1
GUUUAG---------------------------G*GC 1
UCUAGG---------------------------G*AC 1
UGCUAC---------------------------G*CC 1
UGGACG---------------------------G*AC 1
UGUAUC---------------------------G*AC 1
UGUUCG---------------------------G*AC 1
UGUUCG---------------------------G*CC 1
UUUUAA---------------------------G*AC 1
UUUUGG---------------------------A*AU 1
ACACG----------------------------G*GU 1
ACUAU----------------------------G*AU 1
GAACA----------------------------G*GC 1
GAAUG----------------------------G*AC 1
GAAUU----------------------------G*UC 1
GAUGU----------------------------G*CC 1
GCAAG----------------------------G*GC 1
GCGUA----------------------------G*GU 1
GCUAG----------------------------G*GC 1
GCUUG----------------------------G*CC 1
GGUCC----------------------------G*GU 1
GGUUG----------------------------U*CA 1
GUAAA----------------------------G*AC 1
GUUUA----------------------------G*CU 1
UCACG----------------------------G*GC 1
UCUAG----------------------------U*AA 1
UCUCG----------------------------G*AC 1
GGUA-----------------------------G*AC 1
Omitted sequenced and counts
UCAUUUAA--------------------------*-- 20
UCUUGAAA--------------------------*-- 7
CCAUUAAA--------------------------*-- 6
GCUUGACA--------------------------*-- 6
GGCAAA----------------------------*-- 6
GCUUUGACA-------------------------*-- 5
GCUUAGACA-------------------------*-- 4
GGUUCAAA--------------------------*-- 4
ACUUGAAAU-------------------------*-- 3
CAUCCAAAAAG-----------------------*-- 2
GACUAGAAAU------------------------*-- 2
GCUUUGACC-------------------------*-- 2
GCUUUGAUA-------------------------*-- 2
CCAUUGAA--------------------------*-- 2
CCAUUUAA--------------------------*-- 2
GAUUUAAA--------------------------*-- 2
GUUUAU---------------------------G*-C 2
GAUACAA---------------------------*-- 2
GCUUGAAAUUAUUU--------------------*-- 1
ACAUCCGAGAAG----------------------*-- 1
CCUUUGAAAAC-----------------------*-- 1
CCUUUGUAAAG-----------------------*-- 1
ACAUUAAAAG------------------------*-- 1
CCAUCAAAAC------------------------*-- 1
GCUUUAAAAA------------------------*-- 1
UCUUUGGAAA------------------------*-- 1
CAGAAAAAG-------------------------*-- 1
GCAUUGGCA-------------------------*-- 1
UAAAAAACA-------------------------*-- 1
GCAUUGAC--------------------------*-- 1
GCUUGUCA--------------------------*-- 1
GCUUUGAC--------------------------*-- 1
UCAUUCAA--------------------------*-- 1
UCGUUAAA--------------------------*-- 1
ACUCGAC---------------------------*-- 1
GCUAGUC---------------------------*-- 1
GCUUGAA---------------------------*-- 1
GCUUGAC---------------------------*-- 1
UCUUGAA---------------------------*-- 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_25412.1
Basepair signature:
|
25.79 | -280.96 | 6 | 3 |
Major groove intercalation |
| 2 |
Motif group IL_19897.3
Basepair signature:
|
14.74 | -259.22 | 7 | 4 |
|
| 3 |
Motif group IL_82706.1
Basepair signature:
|
12.11 | -244.62 | 6 | 3 |
|
| 4 |
Motif group IL_99380.1
Basepair signature:
|
11.05 | -332.61 | 6 | 3 |
|
| 5 |
Motif group IL_87211.1
Basepair signature:
|
7.37 | -373.21 | 6 | 4 |
|
| 6 |
Motif group IL_38186.6
Basepair signature:
|
7.37 | -411.23 | 6 | 4 |
|
| 7 |
Motif group IL_25573.1
Basepair signature:
|
5.79 | -599.65 | 7 | 5 |
|
| 8 |
Motif group IL_94967.1
Basepair signature:
|
5.26 | -570.70 | 5 | 3 |
|
| 9 |
Motif group IL_92634.2
Basepair signature:
|
4.21 | -374.59 | 5 | 3 |
|
| 10 |
Motif group IL_07171.1
Basepair signature:
|
3.16 | -516.62 | 6 | 3 |
Bulged stacked bases |
Loop 35 Hairpin loop
Column numbers: 1061-1132 - View nucleotides in PDB file(s)
Scored sequences and counts
AU------------------------------GAAA-----------------------------------G 20
GC------------------------------GAAA-----------------------------------G 12
UAUC----------------------------AUUU---------------------------------GAU 11
C-------------------------------UUUUA----------------------------------- 7
UCCC----------------------------UUCG---------------------------------GGG 5
CC------------------------------GCAA-----------------------------------G 4
C-------------------------------GUAGA----------------------------------- 4
UA-CGCAGCAUGG-------------------CUUAU-----------------------CC-UGUUGCGAU 3
UA-UACGAUAUGG-------------------CUCAA-----------------------CU-UAUUGUAAU 3
AACUCCAAGCAC--------------------UUGU-------------------------GUGCGAGGAGC 3
CAGCGGC-------------------------GUUUGA----------------------------GUCGUU 3
GUU-----------------------------CUUUG---------------------------------AA 3
GA------------------------------GAAA-----------------------------------U 3
UC------------------------------GAAA-----------------------------------G 3
G-------------------------------GAAA------------------------------------ 3
CCUAAUACAG----------------------UUCG---------------------------CUGUGUAAG 2
CAGG----------------------------UGUAUU-------------------------------CCU 2
UUCC----------------------------UUCG---------------------------------GGA 2
GC------------------------------UUAAU----------------------------------G 2
UG------------------------------UUUAU----------------------------------C 2
A-------------------------------UGAAAG---------------------------------- 2
AA------------------------------AUUA-----------------------------------U 2
AC------------------------------GUAA-----------------------------------G 2
GC------------------------------GCAA-----------------------------------G 2
UA------------------------------GAAA-----------------------------------U 2
C-------------------------------GAAA------------------------------------ 2
--------------------------------GAAA------------------------------------ 2
CU-AAUUAAGG--ACGAACAUCACAAUCCAUCCGUAG---GGUGCGAGAGU-AUGUU-GUAGAAUUAAUUUA 1
CAGUUUAACGGUUAGGGGCGACUUAUAG----UUUAA--------CUACAAGUGGCAACAGACGGUUUAACU 1
UAAAUAAUUAGUUUUCA---------------GUAA--------------------UGAAAAUCAAUUAUUU 1
UGGUUUGUGG-GGC------------------CGUUG----------------------GCACAAUCAAACC 1
CAA-CUCCAAGCAU------------------UUGU-----------------------GUGCAAGGAGCAG 1
AACUCCAAGCAC--------------------UUGU-------------------------GUGCGAAGAGC 1
AACUCCAAGCGC--------------------UUUU-------------------------GCGCAAGGAGC 1
-ACUCCAAGCGC--------------------CUUU-------------------------GCGCAAGGAGC 1
UGAUUGAUAAA---------------------CAAUG-------------------------UUUAUCAGUU 1
UGAUAGC-------------------------GUUUGA----------------------------GCUAUU 1
CAAAUAU-------------------------CGGAC-----------------------------AU-UUU 1
CUUUGGA-------------------------GAGGUC----------------------------UCCA-- 1
UUUUUG--------------------------CAAAUA-----------------------------CAAAA 1
AAAUUG--------------------------UUUU-------------------------------CAAUU 1
CAAUGC--------------------------UUCG-------------------------------GCGUU 1
CAAUGC--------------------------UUCG-------------------------------GUAUU 1
UGAACC--------------------------GAAA-------------------------------GGUUC 1
UGCGAU--------------------------GAGA-------------------------------ACCGU 1
UGCGGU--------------------------GAGA-------------------------------ACCGU 1
AGCGU---------------------------AGAGU-------------------------------GCGC 1
CCCGU---------------------------GGAAA-------------------------------ACGG 1
AUCUU---------------------------UUGU--------------------------------AAGA 1
CAUCC---------------------------UCCG--------------------------------GGGU 1
CGG-----------------------------CUUAGUGU------------------------------CC 1
GAUAG---------------------------CGCA--------------------------------AUAA 1
GAUAG---------------------------UGUA--------------------------------CUAU 1
GUGG----------------------------GGUAUA-------------------------------CCA 1
GUUAG---------------------------GAAA--------------------------------CUAA 1
GUUCC---------------------------GAAA--------------------------------GGAA 1
UUGGG---------------------------UGUUU--------------------------------CCC 1
UUUUC---------------------------UUCG--------------------------------GAAA 1
AAGC----------------------------CUAUG--------------------------------GCU 1
UGGG----------------------------UGUUU--------------------------------CCC 1
UUAU----------------------------AAUAU--------------------------------AUA 1
CAGC----------------------------AUAA---------------------------------GCU 1
CCCC----------------------------UGGC---------------------------------GGG 1
CGGU----------------------------GAAA---------------------------------ACC 1
GGUG----------------------------CUUG---------------------------------CAC 1
GUUA----------------------------GCAA---------------------------------UAA 1
GUUC----------------------------UUCG---------------------------------GAA 1
GUUU----------------------------UUAU---------------------------------AAA 1
UUU-----------------------------UUUAUU--------------------------------AA 1
AAG-----------------------------UUUAA---------------------------------CU 1
AUA-----------------------------CUUUG---------------------------------UA 1
GGG-----------------------------UGUUU---------------------------------CC 1
GUU-----------------------------UUUAA---------------------------------AA 1
UCU-----------------------------UUUUA---------------------------------AG 1
UUA-----------------------------CAUUG---------------------------------UA 1
AAC-----------------------------UUCG----------------------------------GU 1
AUC-----------------------------AUUU----------------------------------GA 1
CAU-----------------------------UUUU----------------------------------AU 1
GAA-----------------------------GUAA----------------------------------UU 1
GAU-----------------------------GAAA----------------------------------AU 1
GGA-----------------------------GUGA----------------------------------UC 1
GU-C----------------------------GAAA---------------------------------G-A 1
UGC-----------------------------UUAU----------------------------------GC 1
AU------------------------------GUAAA----------------------------------A 1
CA------------------------------CAAAG----------------------------------U 1
CA------------------------------UAAAC----------------------------------U 1
GG------------------------------GUUCG----------------------------------C 1
UC------------------------------UUUGA----------------------------------G 1
UG------------------------------CUUGG----------------------------------C 1
UG------------------------------GUUUC----------------------------------C 1
UU------------------------------CUUUG----------------------------------A 1
UU------------------------------UUUAA----------------------------------A 1
AA------------------------------GUUA-----------------------------------U 1
AC------------------------------GCAA-----------------------------------G 1
AC------------------------------UUUG-----------------------------------G 1
AU------------------------------GAAA-----------------------------------A 1
CA------------------------------AUUA-----------------------------------U 1
GA------------------------------AUAA-----------------------------------U 1
GA------------------------------GGAA-----------------------------------U 1
GC------------------------------GUUU-----------------------------------G 1
GC------------------------------UUUA-----------------------------------G 1
GU------------------------------UUCG-----------------------------------G 1
UA------------------------------UUUA-----------------------------------U 1
UC------------------------------GAGA-----------------------------------G 1
UC------------------------------GUAA-----------------------------------G 1
GU------------------------------UUU------------------------------------A 1
UA-------------------------------AAA-----------------------------------U 1
C-------------------------------GCAA------------------------------------ 1
Omitted sequenced and counts
------------------------------------------------------------------------ 98
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_10540.1
Basepair signature:
|
27.60 | -1204.72 | 6 | 4 |
|
| 2 |
Motif group HL_04783.2
Basepair signature:
|
23.44 | -1530.31 | 4 | 3 |
|
| 3 |
Motif group HL_50006.2
Basepair signature:
|
21.35 | -1654.47 | 4 | 3 |
|
| 4 |
Motif group HL_82710.2
Basepair signature:
|
20.31 | -2164.03 | 5 | 4 |
|
| 5 |
Motif group HL_53890.2
Basepair signature:
|
15.10 | -1702.51 | 4 | 3 |
|
| 6 |
Motif group HL_87553.1
Basepair signature:
|
14.06 | -1191.22 | 5 | 3 |
|
| 7 |
Motif group HL_28075.1
Basepair signature:
|
13.02 | -1233.24 | 4 | 3 |
|
| 8 |
Motif group HL_01609.3
Basepair signature:
|
11.46 | -1030.98 | 5 | 4 |
T-loop with 2 bulged bases not stacked |
| 9 |
Motif group HL_57875.1
Basepair signature:
|
8.85 | -2138.89 | 4 | 3 |
|
| 10 |
Motif group HL_48417.5
Basepair signature:
|
7.81 | -1294.49 | 4 | 3 |
|
Loop 36 Internal loop
Column numbers: 1139-1140, 1247-1250 - View nucleotides in PDB file(s)
Scored sequences and counts
GG*C--C 44
CG*AG-G 29
GG*CU-C 24
GG*U--C 22
AG*U--C 20
GC*U--C 15
AG*U--G 13
UG*A--C 11
GU*U--C 10
UG*A--A 9
CA*G--A 6
AC*U--C 5
GG*C--G 5
AG*U--U 4
AA*UA-U 3
CG*GA-U 3
GA*CG-G 3
GA*C--C 3
GU*C--C 3
UC*A--U 3
UG*A--G 3
UA*AAAC 2
GA*CC-C 2
GG*CA-C 2
GG*UU-C 2
UG*AA-G 2
AA*U--C 2
CA*G--C 2
CG*G--C 2
UC*A--C 2
UG*A--U 2
GA*CGGU 1
AA*UC-G 1
AG*UU-G 1
CA*AG-G 1
CG*AG-A 1
CG*GA-G 1
GG*CC-C 1
GG*CG-U 1
GG*UC-A 1
GG*UC-U 1
GG*UU-G 1
GU*UC-C 1
UG*AG-G 1
UU*AC-C 1
AA*U--A 1
AA*U--G 1
AG*U--A 1
AU*U--C 1
CG*A--U 1
CU*G--C 1
GA*C--U 1
GA*U--C 1
GG*C--A 1
GU*C--U 1
UA*A--C 1
UG*G--C 1
UU*A--A 1
Omitted sequenced and counts
-C*GG-U 1
-G*CG-G 1
-C*G--G 1
AU*---U 1
--*G--C 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_07039.3
Basepair signature:
|
82.46 | 25.66 | 2 | 1 |
Major groove platform |
| 2 |
Motif group IL_66635.5
Basepair signature:
|
55.79 | 9.76 | 2 | 1 |
Major groove intercalation |
| 3 |
Motif group IL_33761.2
Basepair signature:
|
53.68 | 7.60 | 2 | 1 |
|
| 4 |
Motif group IL_81831.1
Basepair signature:
|
52.98 | 7.75 | 4 | 1 |
Intercalated cWS |
| 5 |
Motif group IL_42771.1
Basepair signature:
|
51.93 | 4.24 | 3 | 1 |
Multiple bulged bases |
| 6 |
Motif group IL_00225.13
Basepair signature:
|
51.23 | -2.38 | 2 | 1 |
Single bulged G |
| 7 |
Motif group IL_84476.1
Basepair signature:
|
45.61 | -8.26 | 3 | 2 |
Multiple bulged bases |
| 8 |
Motif group IL_90729.1
Basepair signature:
|
45.26 | -0.07 | 2 | 1 |
Single stack bend |
| 9 |
Motif group IL_73452.2
Basepair signature:
|
43.51 | 6.33 | 3 | 1 |
|
| 10 |
Motif group IL_26793.1
Basepair signature:
|
43.51 | -3.22 | 2 | 1 |
Single stack bend |
Loop 37 Internal loop
Column numbers: 1146-1149, 1240-1241 - View nucleotides in PDB file(s)
Scored sequences and counts
G-AA*CU 121
G-AA*CC 62
G-AU*CU 25
A-AA*UU 6
A-AA*UC 5
A-CA*UA 5
A-CA*UG 5
A-UA*UC 5
G-AG*CU 5
GAAU*CC 4
A-UA*UA 4
C-AA*GG 4
A-AA*UA 3
A-CU*UU 3
G-GU*CU 3
AAAA*GC 2
C-GU*GG 2
G-UA*CU 2
AAAU*GU 1
GAAA*CC 1
GAAA*CU 1
GAAU*CU 1
A-AU*UU 1
A-CC*UU 1
A-CU*UC 1
A-GU*UC 1
A-UA*UG 1
A-UG*UU 1
G-AG*CC 1
G-AU*CC 1
G-CG*CG 1
G-UU*CA 1
U-AA*GC 1
Omitted sequenced and counts
----*-U 5
G---*CU 4
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_48076.6
Basepair signature:
|
100.00 | 43.45 | 3 | 0 |
Major groove platform |
| 2 |
Motif group IL_81831.1
Basepair signature:
|
100.00 | 31.75 | 3 | 1 |
Intercalated cWS |
| 3 |
Motif group IL_73452.2
Basepair signature:
|
99.29 | 32.33 | 3 | 1 |
|
| 4 |
Motif group IL_66635.5
Basepair signature:
|
97.51 | 43.14 | 3 | 0 |
Major groove intercalation |
| 5 |
Motif group IL_07039.3
Basepair signature:
|
96.44 | 54.67 | 4 | 0 |
Major groove platform |
| 6 |
Motif group IL_90729.1
Basepair signature:
|
96.44 | 48.25 | 2 | 0 |
Single stack bend |
| 7 |
Motif group IL_33761.2
Basepair signature:
|
96.44 | 43.30 | 4 | 0 |
|
| 8 |
Motif group IL_26793.1
Basepair signature:
|
95.02 | 51.47 | 2 | 0 |
Single stack bend |
| 9 |
Motif group IL_10569.1
Basepair signature:
|
94.66 | 53.30 | 2 | 0 |
|
| 10 |
Motif group IL_42771.1
Basepair signature:
|
94.31 | 51.55 | 2 | 0 |
Multiple bulged bases |
Loop 38 Internal loop
Column numbers: 1149-1150, 1233-1240 - View nucleotides in PDB file(s)
Scored sequences and counts
AG*UCAGA--C 152
UG*ACAGC--C 25
AG*UCAGC--C 23
AG*UCAGG--U 19
AG*UCAGA--U 6
AG*UCAGC--U 6
AG*UCGGA--C 5
AG*UCCGU--G 4
UG*ACAUA--C 4
UG*ACGGG--U 4
GU*-CAUUCUC 2
AC*UCAGA--C 2
AG*UCACU--U 2
GA*UGCGA--C 2
UG*ACAGA--C 2
UG*AGGGC--G 2
AG*-GAGGCUC 1
AA*UCAGC--C 1
AG*UCAAA--C 1
AG*UCAAG--C 1
AG*UCACA--G 1
AG*UCACG--C 1
AG*UCAGA--G 1
AG*UCAGU--U 1
AG*UCAUC--G 1
CG*-UCACA-U 1
GG*CAGGA--C 1
GG*UUCGC--U 1
UA*UCGGA--C 1
UG*ACAGC--G 1
UG*ACAGC--U 1
UG*AGGGC--U 1
Omitted sequenced and counts
--*-GAGU--- 5
U-*AUGUG--C 3
--*-------C 3
G-*-UAGAG-C 1
G-*CCGGC--C 1
--*CAUUC--C 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_99380.1
Basepair signature:
|
8.33 | -29.39 | 5 | 4 |
|
| 2 |
Motif group IL_81522.2
Basepair signature:
|
7.25 | -47.75 | 3 | 2 |
Major groove minor groove platform with intercalation; mini C-loop |
| 3 |
Motif group IL_92634.2
Basepair signature:
|
6.88 | -54.08 | 5 | 3 |
|
| 4 |
Motif group IL_70376.1
Basepair signature:
|
2.54 | -28.93 | 5 | 3 |
|
| 5 |
Motif group IL_29346.2
Basepair signature:
|
0.72 | -93.36 | 6 | 2 |
Left turn |
| 6 |
Motif group IL_07173.1
Basepair signature:
|
0.36 | -47.72 | 6 | 3 |
|
Loop 39 Internal loop
Column numbers: 1151-1153, 1179-1232 - View nucleotides in PDB file(s)
Scored sequences and counts
U-U*G---------------------------------------------------GC 49
U-A*U---------------------------------------------------GC 37
C-A*U---------------------------------------------------GC 29
U-U*A---------------------------------------------------GC 24
U-C*G---------------------------------------------------GC 15
C-C*A---------------------------------------------------GC 13
C-U*A---------------------------------------------------GU 11
GUU*A--------------------------------------------------GCU 8
C-A*U---------------------------------------------------GU 8
C-U*A---------------------------------------------------GC 8
C-C*C---------------------------------------------------GC 7
C-U*G---------------------------------------------------GC 7
C-G*U---------------------------------------------------GC 5
G-U*A---------------------------------------------------CC 5
C-U*A---------------------------------------------------UC 4
G-U*U---------------------------------------------------CC 4
A-U*G---------------------------------------------------UC 3
U-A*U---------------------------------------------------AC 3
U-G*U---------------------------------------------------GC 3
C-C*G---------------------------------------------------GC 2
C-C*U---------------------------------------------------GC 2
C-U*G---------------------------------------------------GU 2
GAG*C----------------------------------------------------A 2
U-C*A---------------------------------------------------GC 2
U-C*U---------------------------------------------------UC 2
U-U*AGAGUAUGCGUGA--------------------------GCUGCUCCUAAU-AC 1
A-U*A---------------------------------------------------UC 1
C-A*A---------------------------------------------------GC 1
C-A*C---------------------------------------------------GC 1
C-C*G---------------------------------------------------GU 1
C-G*C---------------------------------------------------GU 1
G-G*U---------------------------------------------------CU 1
G-U*G---------------------------------------------------CC 1
GAG*C---------------------------------------------------A- 1
U-A*U---------------------------------------------------AU 1
U-A*U---------------------------------------------------GU 1
U-C*A---------------------------------------------------AC 1
U-G*C---------------------------------------------------GC 1
U-U*A---------------------------------------------------GG 1
U-U*G---------------------------------------------------GG 1
C-U*A---------------------------------------------------G- 1
Omitted sequenced and counts
---*---------UGUAGUAGGAAGUCGAGAGCCUAUGA------------------- 3
--C*G----------------------------------------------------- 3
---*-------AAAGAAGCAUAAAUAGCUAAUCUGUGGGCGGU--------------- 2
--U*A----------------------------------------------------U 2
--A*-----------------------------------------------------G 2
---*-------AAAGAAGCAGAAAUAGCUAAUCUGUGGGCGGU--------------- 1
---*---------UGUAGUAGGGAGUCGAGAACCUAUGA------------------- 1
---*---------UUUAGUAGGAAGUCGAGAGCCUAUGA------------------- 1
---*---------GUCAACCGGAGUUGCAAACCGGGG--------------------C 1
--G*C---------------------------------------------------AA 1
A-A*U----------------------------------------------------- 1
A-A*------------------------------------------------------ 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_07039.3
Basepair signature:
|
95.57 | 15.42 | 3 | 0 |
Major groove platform |
| 2 |
Motif group IL_48076.6
Basepair signature:
|
95.57 | -14.89 | 2 | 0 |
Major groove platform |
| 3 |
Motif group IL_90729.1
Basepair signature:
|
95.57 | -21.21 | 3 | 0 |
Single stack bend |
| 4 |
Motif group IL_66635.5
Basepair signature:
|
94.83 | 3.32 | 2 | 0 |
Major groove intercalation |
| 5 |
Motif group IL_16386.4
Basepair signature:
|
92.99 | 2.81 | 4 | 0 |
|
| 6 |
Motif group IL_10569.1
Basepair signature:
|
92.25 | -23.37 | 3 | 1 |
|
| 7 |
Motif group IL_00225.13
Basepair signature:
|
88.56 | 2.83 | 1 | 0 |
Single bulged G |
| 8 |
Motif group IL_81831.1
Basepair signature:
|
86.72 | -27.46 | 4 | 1 |
Intercalated cWS |
| 9 |
Motif group IL_33761.2
Basepair signature:
|
82.66 | -31.04 | 3 | 1 |
|
| 10 |
Motif group IL_73452.2
Basepair signature:
|
81.55 | -29.49 | 4 | 1 |
|
Loop 40 Internal loop
Column numbers: 1155-1158, 1174-1177 - View nucleotides in PDB file(s)
Scored sequences and counts
U--A*U--A 58
G--G*C--C 29
A--A*U--U 23
-A-G*C--G 17
-A-A*G--G 14
-C-A*G--A 7
A--G*C--U 7
U--G*U--A 7
UA-G*C-GA 6
-A-A*G--A 6
A--G*U--U 6
U--G*C--A 6
U--U*U--U 6
GG-A*U-CC 4
U--C*G--G 4
AU-G*U-AU 3
AU-G*U-GU 3
UG-G*C-CA 3
-A-A*U--G 3
G--A*C--C 3
G--A*U--C 3
G--U*G--C 3
U--A*G--A 3
AC-G*C-GU 2
AU-A*U-AU 2
AU-G*U-UU 2
CC-A*U-GG 2
UA-A*U-UA 2
-A-A*A--G 2
C--A*U--G 2
U--A*U--G 2
U--A*U--U 2
U--G*U--G 2
-GAG*CG-A 1
AA-G*U-UU 1
AC-G*U-GU 1
AG-A*U-CU 1
AG-G*C-CU 1
AG-U*C-CU 1
AU-A*U-GU 1
AU-G*C-AU 1
CG-G*C-CG 1
UA-C*G-UA 1
UA-G*C-UA 1
UA-U*A-UG 1
UC-G*C-GA 1
UG-C*G-CA 1
UG-C*G-UA 1
UG-C*G-UG 1
A-UU*C--U 1
AG-U*C--U 1
C--G*C-AA 1
CU-G*C-U- 1
GG-C*--CC 1
U--U*A-UU 1
-A-A*A--A 1
-A-U*A--G 1
-U-A*G--A 1
A--A*C--U 1
A--G*A--U 1
C--G*U--G 1
C--U*U--C 1
G--U*A--C 1
U--A*A--A 1
U--C*G--A 1
U--G*C--U 1
U--G*U--U 1
U--U*A--A 1
U--U*G--A 1
Omitted sequenced and counts
----*---- 9
U---*A--A 1
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group IL_42771.1
Basepair signature:
|
81.79 | 15.14 | 2 | 1 |
Multiple bulged bases |
| 2 |
Motif group IL_31737.3
Basepair signature:
|
79.64 | -0.54 | 3 | 1 |
Stack and bulge |
| 3 |
Motif group IL_84476.1
Basepair signature:
|
70.36 | -2.42 | 4 | 2 |
Multiple bulged bases |
| 4 |
Motif group IL_90729.1
Basepair signature:
|
66.79 | -5.06 | 2 | 1 |
Single stack bend |
| 5 |
Motif group IL_26793.1
Basepair signature:
|
66.43 | -4.63 | 2 | 1 |
Single stack bend |
| 6 |
Motif group IL_66635.5
Basepair signature:
|
66.07 | -2.40 | 3 | 1 |
Major groove intercalation |
| 7 |
Motif group IL_07039.3
Basepair signature:
|
64.64 | 3.31 | 2 | 1 |
Major groove platform |
| 8 |
Motif group IL_81831.1
Basepair signature:
|
56.79 | -0.55 | 3 | 1 |
Intercalated cWS |
| 9 |
Motif group IL_00225.13
Basepair signature:
|
54.29 | -23.68 | 1 | 1 |
Single bulged G |
| 10 |
Motif group IL_33761.2
Basepair signature:
|
53.93 | -18.86 | 4 | 1 |
|
Loop 41 Hairpin loop
Column numbers: 1161-1171 - View nucleotides in PDB file(s)
Scored sequences and counts
GUCGCU----C 102
GUAGCU----C 51
CGA-CG----G 31
GUCGCU----A 18
-UUGCU----A 14
GUCGCA----C 7
-UUGCUA---- 7
-AACGUACAA- 4
GUCGCA----A 4
UGA-CG----G 4
ACCGUACA--U 3
GCCGCU----C 3
GUUGCU----A 3
GGA-CG----C 3
UU-GCU----A 3
CUAGCU----A 2
UUAGCU----A 2
AGA-CG----U 2
GUUGCU----- 2
-GGCA------ 2
GUAGAU----C 1
GUAGCG----C 1
GUAGCU----A 1
GUAGCU----G 1
GUCGCA----G 1
GUCGCC----C 1
GUCGCG----C 1
GUCGCU----G 1
GUUGCU----C 1
UACGCG----G 1
UUCGCU----A 1
U-CGCA----A 1
UUG-CA----A 1
-GGCG------ 1
Omitted sequenced and counts
----------- 9
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_13529.1
Basepair signature:
|
58.01 | -7.18 | 4 | 2 |
|
| 2 |
Motif group HL_56131.2
Basepair signature:
|
45.91 | -15.36 | 3 | 2 |
|
| 3 |
Motif group HL_20535.2
Basepair signature:
|
38.43 | -16.42 | 3 | 2 |
|
| 4 |
Motif group HL_66103.1
Basepair signature:
|
37.01 | -17.14 | 4 | 2 |
|
| 5 |
Motif group HL_04783.2
Basepair signature:
|
19.93 | -26.52 | 4 | 2 |
|
| 6 |
Motif group HL_99040.1
Basepair signature:
|
19.22 | -48.38 | 4 | 2 |
|
| 7 |
Motif group HL_31585.4
Basepair signature:
|
18.86 | -164.69 | 3 | 2 |
Purine riboswitch |
| 8 |
Motif group HL_81100.2
Basepair signature:
|
18.86 | -407.62 | 4 | 2 |
|
| 9 |
Motif group HL_13963.3
Basepair signature:
|
16.01 | -44.81 | 4 | 3 |
|
| 10 |
Motif group HL_65794.5
Basepair signature:
|
14.95 | -44.90 | 2 | 2 |
Pseudoknot geometry |
Loop 42 Hairpin loop
Column numbers: 1308-1328 - View nucleotides in PDB file(s)
Scored sequences and counts
CGAAG---------------G 114
UGAAUAAAA-----------G 31
UGAAG---------------A 31
CGAAA---------------G 30
GGAAG---------------C 18
GGAAA---------------C 9
AGAAG---------------U 7
UGAACAAAA-----------G 5
CUAAAA--------------A 5
UGAAG---------------G 5
GGAAGUC-------------U 3
GGAGGA--------------C 3
AGAAA---------------U 3
UCCCACGUAAGCCA------A 2
GUUAAUAG------------C 2
GUAAC---------------G 2
UGAAA---------------G 2
-UUGUAUAAGCCGUACACUA- 1
---CCACGUAAGCCAAUACG- 1
CGAACAAAA-----------A 1
UGAACAAAA-----------A 1
UGAAGAAAA-----------G 1
GAUAAAA-------------A 1
AGAAAC--------------A 1
GGAAGC--------------C 1
UGAGAA--------------A 1
UGAGGA--------------A 1
---AGAAAA------------ 1
AAAAC---------------A 1
AGAAA---------------A 1
GGAAG---------------U 1
UGAAA---------------A 1
Omitted sequenced and counts
--------------------- 3
Click on headings to reorder table
- View All Results for this Loop
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_04783.2
Basepair signature:
|
80.84 | -26.00 | 1 | 1 |
|
| 2 |
Motif group HL_53890.2
Basepair signature:
|
80.84 | -58.98 | 2 | 1 |
|
| 3 |
Motif group HL_50006.2
Basepair signature:
|
79.44 | -68.37 | 1 | 1 |
|
| 4 |
Motif group HL_87954.2
Basepair signature:
|
79.44 | -92.77 | 2 | 1 |
|
| 5 |
Motif group HL_93535.1
Basepair signature:
|
79.09 | -73.09 | 2 | 2 |
|
| 6 |
Motif group HL_65794.5
Basepair signature:
|
79.09 | -150.82 | 2 | 1 |
Pseudoknot geometry |
| 7 |
Motif group HL_37824.7
Basepair signature:
|
78.75 | -0.66 | 0 | 0 |
GNRA |
| 8 |
Motif group HL_80922.2
Basepair signature:
|
78.75 | -51.25 | 2 | 2 |
|
| 9 |
Motif group HL_82710.2
Basepair signature:
|
78.05 | -145.35 | 3 | 1 |
|
| 10 |
Motif group HL_75660.5
Basepair signature:
|
78.05 | -152.46 | 1 | 1 |
|