RNA 3D Hub

JAR3D Query RF03087-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03087 maps to these 30 chains: 9ISV|1|A, 9J3R|1|A, 9J3R|1|B, 9J3R|1|C, 9J3R|1|D, 9J3T|1|A, 9J3T|1|B, 9J3T|1|C, 9J3T|1|D, 9J3T|1|E, 9J3T|1|F, 9J3T|1|G, 9J3T|1|H, 9MM6|1|A, 9MM6|1|E, 9MM6|1|I, 9MM6|1|M, 9MM6|1|Q, 9MM6|1|U, 9MM6|1|Y, 9MM6|1|c, 9MME|1|U, 9MME|1|Y, 9MME|1|c, 9MME|1|g, 9MME|1|k, 9MME|1|o, 9MME|1|s, 9MME|1|w, 9MMG|1|c See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 39 Internal loop

Column numbers: 1151-1153, 1179-1232 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    U-U*G---------------------------------------------------GC   49

    
    U-A*U---------------------------------------------------GC   37

    
    C-A*U---------------------------------------------------GC   29

    
    U-U*A---------------------------------------------------GC   24

    
    U-C*G---------------------------------------------------GC   15

    
    C-C*A---------------------------------------------------GC   13

    
    C-U*A---------------------------------------------------GU   11

    
    GUU*A--------------------------------------------------GCU    8

    
    C-A*U---------------------------------------------------GU    8

    
    C-U*A---------------------------------------------------GC    8

    
    C-C*C---------------------------------------------------GC    7

    
    C-U*G---------------------------------------------------GC    7

    
    C-G*U---------------------------------------------------GC    5

    
    G-U*A---------------------------------------------------CC    5

    
    C-U*A---------------------------------------------------UC    4

    
    G-U*U---------------------------------------------------CC    4

    
    A-U*G---------------------------------------------------UC    3

    
    U-A*U---------------------------------------------------AC    3

    
    U-G*U---------------------------------------------------GC    3

    
    C-C*G---------------------------------------------------GC    2

    
    C-C*U---------------------------------------------------GC    2

    
    C-U*G---------------------------------------------------GU    2

    
    GAG*C----------------------------------------------------A    2

    
    U-C*A---------------------------------------------------GC    2

    
    U-C*U---------------------------------------------------UC    2

    
    U-U*AGAGUAUGCGUGA--------------------------GCUGCUCCUAAU-AC    1

    
    A-U*A---------------------------------------------------UC    1

    
    C-A*A---------------------------------------------------GC    1

    
    C-A*C---------------------------------------------------GC    1

    
    C-C*G---------------------------------------------------GU    1

    
    C-G*C---------------------------------------------------GU    1

    
    G-G*U---------------------------------------------------CU    1

    
    G-U*G---------------------------------------------------CC    1

    
    GAG*C---------------------------------------------------A-    1

    
    U-A*U---------------------------------------------------AU    1

    
    U-A*U---------------------------------------------------GU    1

    
    U-C*A---------------------------------------------------AC    1

    
    U-G*C---------------------------------------------------GC    1

    
    U-U*A---------------------------------------------------GG    1

    
    U-U*G---------------------------------------------------GG    1

    
    C-U*A---------------------------------------------------G-    1

    
    Omitted sequenced and counts

    
    ---*---------UGUAGUAGGAAGUCGAGAGCCUAUGA-------------------    3

    
    --C*G-----------------------------------------------------    3

    
    ---*-------AAAGAAGCAUAAAUAGCUAAUCUGUGGGCGGU---------------    2

    
    --U*A----------------------------------------------------U    2

    
    --A*-----------------------------------------------------G    2

    
    ---*-------AAAGAAGCAGAAAUAGCUAAUCUGUGGGCGGU---------------    1

    
    ---*---------UGUAGUAGGGAGUCGAGAACCUAUGA-------------------    1

    
    ---*---------UUUAGUAGGAAGUCGAGAGCCUAUGA-------------------    1

    
    ---*---------GUCAACCGGAGUUGCAAACCGGGG--------------------C    1

    
    --G*C---------------------------------------------------AA    1

    
    A-A*U-----------------------------------------------------    1

    
    A-A*------------------------------------------------------    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

95.57 15.42 3 0

Major groove platform

2

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

95.57 -14.89 2 0

Major groove platform

3

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

95.57 -21.21 3 0

Single stack bend

4

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

94.83 3.32 2 0

Major groove intercalation

5

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

92.99 2.81 4 0

6

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

92.25 -23.37 3 1

7

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

88.56 2.83 1 0

Single bulged G

8

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

86.72 -27.46 4 1

Intercalated cWS

9

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

82.66 -31.04 3 1

10

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

81.55 -29.49 4 1

11

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

66.79 -42.58 5 1

12

Motif group IL_42771.1

Basepair signature:
cWW-cWW

61.62 -36.97 3 1

Multiple bulged bases

13

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

60.89 -44.06 3 1

Stack and bulge

14

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

50.55 -48.44 3 1

Single stack bend

15

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

9.59 -104.87 2 1

Minor groove platform

16

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

5.90 -94.46 2 1

Single bulged U

17

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

4.43 -71.42 2 1

Single bulged C

18

Motif group IL_82107.4

Basepair signature:
cWW-cWW

3.69 -61.72 3 1

Multiple bulged bases

19

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

2.95 -116.32 4 2

20

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

2.95 -138.16 4 2

Isolated non-canonical cWW pair

21

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

2.21 -93.13 2 1

Single bulged A

22

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

2.21 -98.45 4 2

23

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

1.85 -108.73 4 2

24

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

1.85 -119.67 4 2

25

Motif group IL_42626.2

Basepair signature:
cWW-cWW

1.85 -125.46 3 2

26

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.37 -93.97 4 1

Multiple bulged bases

27

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.37 -101.20 4 2

28

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.37 -128.49 3 1

Isolated non-canonical cWW pair

29

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.37 -149.95 3 2

Isolated cWS basepair

30

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.37 -167.02 2 1

Isolated non-canonical cWW pair

31

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.37 -183.68 2 1

Isolated cWH basepair

32

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -71.33 3 1

Isolated non-canonical cWW contact

33

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -88.36 3 1

34

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -93.03 4 2

35

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -101.57 5 2

Bulged stacked bases

36

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -108.17 3 1

Isolated tHS basepair with bulges

37

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -112.97 5 2

38

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -114.09 6 2

Multiple bulged bases

39

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -114.32 5 2

40

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -117.03 5 2

41

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -117.70 4 1

Minor groove platform, major groove intercalation

42

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -118.52 6 3

43

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -120.52 4 2

44

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -125.15 6 4

45

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -125.20 6 4

46

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -130.37 7 5

47

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -131.42 5 2

48

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -132.38 5 3

49

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -132.98 6 3

50

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -136.53 5 4

51

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -138.93 6 3

52

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -140.21 6 4

53

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -143.41 7 4

54

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -143.59 6 4

55

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -144.75 4 2

Major groove platform with intercalation

56

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -145.06 6 4

57

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -147.36 5 2

58

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -150.29 8 5

59

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -155.53 5 4

60

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -155.60 7 4

Major groove intercalation

61

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -157.79 3 2

Isolated non-canonical cWW pair

62

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -158.03 7 5

63

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -158.08 6 4

64

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -158.81 4 2

Major groove platform with intercalated tWH

65

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -158.89 7 5

Pseudoknot

66

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -159.17 5 3

67

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -159.27 5 2

Left turn

68

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -159.29 6 5

Intercalated tWH

69

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -160.05 6 3

70

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -160.18 5 3

71

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -161.78 6 3

72

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -164.30 6 3

73

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -165.05 8 5

74

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -167.61 9 6

75

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -167.86 6 4

76

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -168.75 7 5

77

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -168.92 6 3

78

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -169.80 4 2

Isolated tWW turn

79

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -169.99 5 3

80

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -171.00 5 3

81

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -171.23 7 5

82

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -171.46 8 6

83

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -172.89 8 6

Kink-turn related

84

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -173.15 4 2

85

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -173.84 4 2

Decoding loop related

86

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -174.24 7 4

87

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -174.68 7 5

88

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -174.70 4 2

89

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -174.77 8 5

90

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -174.97 6 3

91

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -175.05 8 6

92

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -175.85 8 6

tSH-tHW

93

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -176.72 5 3

94

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -177.38 5 3

95

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -178.22 5 3

96

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -178.25 6 4

97

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -179.61 8 6

98

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -180.52 8 5

99

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -180.61 5 3

100

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -181.51 7 4

Multiple bulged bases

101

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -182.30 6 4

102

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -183.14 4 2

103

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -183.25 7 6

104

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -183.63 8 7

105

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -183.81 7 5

106

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -184.46 6 5

107

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -184.75 7 5

108

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -184.87 7 5

109

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -185.25 7 6

110

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -185.73 7 5

111

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -186.78 8 6

Vitamin B12 Aptamer

112

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -187.90 5 3

113

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -188.21 8 7

114

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -188.52 7 5

115

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -190.16 7 5

116

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -190.41 7 5

117

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -190.81 5 3

118

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -192.14 9 7

119

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -192.25 8 5

Decoding loop related

120

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -192.43 5 3

121

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -193.23 7 5

122

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -193.47 9 7

123

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -193.74 8 6

Part of G-quadruplex

124

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -193.75 8 6

125

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -194.17 7 5

126

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -194.85 5 4

Isolated non-canonical cWW pair

127

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -196.55 8 6

128

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -197.42 7 5

129

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -198.53 6 5

Receptor of 11-nt loop-receptor motif

130

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -199.28 6 4

131

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -199.55 7 5

132

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -199.62 8 6

133

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -200.18 7 4

134

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -200.36 7 6

135

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -200.51 9 6

Triple sheared related

136

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -200.92 6 5

tSH-tHW

137

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -201.85 6 5

138

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -202.23 8 7

139

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -202.34 6 5

140

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -203.67 7 5

Receptor of 11-nt loop-receptor motif

141

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -204.03 6 4

142

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -204.59 6 3

143

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -205.10 7 4

144

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -205.12 8 6

145

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -206.04 8 6

146

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -206.47 4 2

Major groove minor groove platform with intercalation; mini C-loop

147

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -207.36 7 5

180 degree turn

148

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -207.51 7 5

149

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -207.93 9 7

150

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -208.17 9 6

151

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -208.99 9 7

Reverse kink-turn related

152

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -209.06 7 5

153

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -209.26 9 7

154

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -210.24 8 6

cWH basepair with bulged bases

155

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -210.66 8 6

156

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -211.70 5 4

157

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -212.05 8 7

158

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -212.33 5 3

159

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -212.76 10 8

160

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -213.22 9 7

161

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -213.54 10 8

162

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -214.34 6 4

163

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -214.76 6 3

164

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -215.40 7 6

UAA/GAN related

165

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -215.40 8 7

166

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -216.08 7 5

167

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -216.17 7 4

168

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -216.98 9 7

169

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -217.64 3 1

Minor groove platform

170

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -217.89 7 5

171

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -218.98 10 8

Reverse turn

172

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -219.17 6 5

AAA cross-strand stack

173

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -219.47 8 6

174

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -219.88 7 4

175

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -220.23 8 7

176

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -222.27 6 6

177

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -222.30 8 6

Other IL

178

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -222.51 3 2

Isolated non-canonical cWW pair

179

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -222.59 9 7

UAA/GAN with extra stack

180

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -222.93 10 7

181

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -223.40 5 4

Tandem non-canonical cWW pairs

182

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -223.96 5 4

Double sheared

183

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -225.03 6 3

184

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -225.24 8 6

185

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -225.31 8 6

UAA/GAN with tHH

186

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -225.75 8 7

Minor groove platform

187

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -225.90 7 6

188

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -226.29 8 6

6x5 Sarcin-Ricin; G-bulge

189

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -226.65 9 8

190

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -226.87 8 7

191

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -226.94 9 7

192

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -228.11 9 7

193

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -228.24 10 7

194

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -228.62 9 7

Reverse kink-turn

195

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -235.64 9 8

Kink-turn related

196

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -236.50 10 8

197

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -237.21 5 4

198

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -237.56 9 7

199

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -239.25 9 8

200

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -239.42 9 6

201

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -239.81 6 4

Minor groove platform

202

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -239.82 10 8

203

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -240.43 8 7

Double sheared; A in syn; two near cWW pairs

204

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -241.07 10 8

205

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -241.96 9 8

206

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -242.73 9 7

207

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -243.67 9 7

Kink-turn

208

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -243.92 9 6

209

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -244.06 6 4

UAA/GAN

210

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -244.49 8 7

211

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -246.37 8 7

Kink-turn with embedded cWW pair

212

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -246.79 8 6

Kink-turn related

213

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -246.92 9 7

214

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -247.12 8 8

Sarcin-Ricin target in LSU H95; G-bulge

215

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -247.32 10 8

216

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -247.87 6 4

tSH-tHW

217

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -248.93 6 4

218

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -249.56 6 5

cWH basepair and non-canonical AC

219

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -250.58 6 4

220

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -251.97 9 8

tHW-tHW cross-strand stack

221

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -254.24 9 9

222

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -254.47 11 9

223

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -254.54 9 7

Kink-turn related

224

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -255.13 6 4

Other IL

225

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -256.33 9 9

226

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -256.36 3 1

Major groove platform; stack outside cWW

227

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -257.36 10 8

228

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -258.36 10 8

229

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -258.46 10 10

230

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -260.01 10 9

231

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -260.55 9 7

tSH-tHH-tHS

232

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -262.10 10 8

233

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -262.21 10 8

234

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -262.81 6 4

235

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -263.54 8 7

236

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -264.45 9 7

237

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -264.71 10 9

238

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -265.85 10 8

tSH-tSH-tHH-tHS

239

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -266.19 11 9

240

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -266.83 9 8

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

241

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -267.08 12 11

242

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -267.48 9 7

Other IL

243

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -268.83 6 4

244

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -268.97 6 4

245

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -269.55 9 8

246

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -270.71 7 5

UAA/GAN

247

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -271.15 10 9

248

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -271.22 10 9

tWH-tWH-tHW-tHW

249

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -273.50 11 9

8x6 Sarcin-Ricin with inserted A; G-bulge

250

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -274.17 10 8

251

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -274.21 10 9

252

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -274.45 4 2

Major groove minor groove platform; mini C-loop

253

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -276.12 4 2

254

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -278.19 11 9

255

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -279.15 6 5

256

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -279.23 12 9

257

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -279.63 10 9

258

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -280.97 10 9

tSH-tHS-tHW

259

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -281.44 8 6

260

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -282.18 7 4

261

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -283.53 9 8

7x6 Sarcin-Ricin; G-bulge

262

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -284.68 6 4

263

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -284.77 10 10

264

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -285.09 6 3

265

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -285.18 11 11

266

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -285.56 6 4

UAA/GAN variation

267

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -288.40 10 9

8x6 Sarcin-Ricin with inserted Y; G-bulge

268

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -288.59 8 6

269

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -289.29 11 10

270

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -290.80 10 9

7x7 Sarcin-Ricin with intercalated A; G-bulge

271

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -291.04 12 10

Pseudoknot

272

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -291.47 10 9

Triple sheared with non-canonical cWW

273

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -291.61 4 3

Tandem non-canonical cWW pairs

274

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -293.13 8 7

UAA/GAN with extra cWW

275

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -295.46 6 4

UAA/GAN related

276

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -297.35 11 9

277

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -297.99 9 8

Kink-turn

278

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -298.06 8 6

Kink-turn from U4

279

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -298.73 10 8

280

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -299.52 12 10

281

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -299.77 12 10

282

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -300.09 11 10

283

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -300.11 11 9

8x6 Sarcin-Ricin with bulged A; G-bulge

284

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -301.92 8 5

Triple sheared

285

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -302.12 8 7

tSH-tWH-tHS-cWW

286

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -304.76 9 9

287

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -305.16 6 5

SSU/LSU pseudoknot

288

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -305.60 11 10

289

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -307.45 14 13

290

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -309.44 8 7

291

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -309.58 9 7

tSH-tHW-tWH-tHS

292

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -311.23 11 10

293

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -311.52 12 11

294

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -311.71 11 8

Kink-turn

295

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -312.50 4 4

Tandem non-canonical cWW pairs

296

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -315.04 10 9

Kink-turn

297

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -315.04 12 10

298

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -317.60 8 7

299

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -319.91 12 10

8x7 Sarcin-Ricin; G-bulge

300

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -320.81 10 8

Kink-turn

301

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -321.83 11 9

Reverse kink-turn related

302

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -323.69 5 3

303

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -325.37 6 4

304

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -326.82 13 11

305

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -329.09 12 11

306

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -330.53 4 3

Double sheared

307

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -332.91 17 15

Kink-turn related

308

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -333.13 5 5

309

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -333.60 13 11

310

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -334.08 6 4

311

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -337.38 12 10

Kink-turn

312

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -337.92 12 12

tSH-tHW-tHH-tHS

313

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -339.48 12 12

314

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -339.78 12 10

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

315

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -340.08 11 10

8x7 Sarcin-Ricin; G-bulge

316

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -341.89 7 6

317

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -343.16 15 14

318

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -344.48 15 14

Pseudoknot

319

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -345.42 13 12

320

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -345.52 11 9

321

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -347.31 6 5

Double sheared with non-canonical cWW

322

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -347.59 9 8

Kink-turn

323

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -348.72 9 8

Kink-turn

324

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -348.83 13 12

325

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -349.05 11 11

326

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -352.43 16 15

327

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -353.86 5 4

328

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -353.92 11 9

329

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -355.13 17 16

330

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -355.95 5 3

8-nt loop receptor

331

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -356.15 13 12

332

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -358.57 10 8

Kink-turn

333

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -359.30 9 7

Quadruple sheared

334

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -362.32 13 12

335

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -362.58 10 7

336

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -363.61 7 5

337

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -364.67 13 12

338

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -365.61 14 13

10x8 Sarcin-Ricin; G-bulge

339

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -368.04 7 6

340

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -369.32 10 7

341

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -369.98 5 3

342

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -371.14 13 11

343

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -371.40 13 12

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

344

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -371.41 12 11

345

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -372.54 14 12

346

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -373.31 14 13

347

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -373.79 11 10

348

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -373.85 11 10

Kink-turn

349

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -374.09 6 5

tSH-tWH-tHS

350

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -375.12 11 10

Kink-turn

351

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -375.30 6 5

Triple non-canonical cWW pairs

352

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -375.42 15 14

353

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -375.69 15 13

354

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -376.03 13 12

355

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -376.37 12 12

356

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -380.32 13 12

357

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -381.11 16 15

358

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -381.87 7 4

359

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -382.07 11 10

360

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -382.66 6 5

5x5 Sarcin-Ricin with intercalated A; G-bulge

361

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -383.62 13 12

362

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -386.70 15 13

363

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -390.82 19 17

Kink-turn

364

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -393.04 16 15

365

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -400.87 13 12

366

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -402.23 16 15

367

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -403.72 11 8

Part of G-quadruplex

368

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -406.18 16 14

369

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -407.67 6 5

Triple sheared

370

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -416.52 14 13

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

371

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -419.75 16 16

372

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -419.97 12 11

Kink-turn related

373

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -431.67 16 14

Pseudoknot

374

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -433.01 10 9

Minor groove platform related

375

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -433.74 13 12

376

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -434.50 13 13

377

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -435.39 13 13

378

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -435.64 18 18

379

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -437.35 18 17

380

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -440.22 16 15

381

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -445.06 19 18

382

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -445.28 7 5

383

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -453.63 15 13

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

384

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -458.71 13 13

Bacterial 5S Loop E

385

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -466.43 18 18

386

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -469.27 5 4

Minor groove platform

387

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -474.40 7 6

Major groove intercalation

388

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -476.72 11 10

389

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -477.15 10 10

Kink-turn with non-sequential stacking

390

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -482.87 11 10

391

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -484.31 12 11

392

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -512.52 15 15

393

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -514.38 20 18

Kink-turn related

394

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -524.72 15 13

395

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -531.59 10 7

Kink-turn

396

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -534.93 22 21

397

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -550.59 21 21

398

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -570.58 21 20

399

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -594.34 24 23

400

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -609.64 24 23

401

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -613.30 14 13

402

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -647.62 7 6

Symmetric double minor groove platform

403

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -666.32 20 20

404

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6250.72 9 9

405

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -7001.37 6 5

C-loop with bulged stacked A's

406

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8853.00 5 3

C-loop

407

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 4 2

C-loop

408

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -9999.00 22 21

409

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 18 17

410

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -9999.00 24 23

411

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 6 3

Coloring options: