RNA 3D Hub

JAR3D Query RF03087-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03087 maps to these 30 chains: 9ISV|1|A, 9J3R|1|A, 9J3R|1|B, 9J3R|1|C, 9J3R|1|D, 9J3T|1|A, 9J3T|1|B, 9J3T|1|C, 9J3T|1|D, 9J3T|1|E, 9J3T|1|F, 9J3T|1|G, 9J3T|1|H, 9MM6|1|A, 9MM6|1|E, 9MM6|1|I, 9MM6|1|M, 9MM6|1|Q, 9MM6|1|U, 9MM6|1|Y, 9MM6|1|c, 9MME|1|U, 9MME|1|Y, 9MME|1|c, 9MME|1|g, 9MME|1|k, 9MME|1|o, 9MME|1|s, 9MME|1|w, 9MMG|1|c See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 34 Internal loop

Column numbers: 1027-1060, 1133-1134 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    GCUUCGU--------------------------G*UC   23

    
    CUUAA----------------------------C*AG   11

    
    GCAUUG---------------------------G*CC    6

    
    GUUUAU---------------------------G*AC    6

    
    GAAAAUG--------------------------G*GC    5

    
    GCAUACG--------------------------G*GC    4

    
    GCGUAG---------------------------C*UG    4

    
    GCUUGG---------------------------A*AU    4

    
    ACUUCGGUA------------------------G*CC    3

    
    UCAACGG--------------------------G*GU    3

    
    GAUU-----------------------------G*UU    3

    
    GCUU-----------------------------G*UU    3

    
    GUUUUAGG-------------------------U*GA    2

    
    GCAUUGG--------------------------G*CC    2

    
    ACAAGG---------------------------U*AA    2

    
    CAAUUG---------------------------C*AG    2

    
    GAAAUG---------------------------G*GC    2

    
    GAAUUG---------------------------G*GC    2

    
    GACCAG---------------------------C*GG    2

    
    UCUUGA---------------------------U*CA    2

    
    GCAAG----------------------------G*CU    2

    
    GCUUG----------------------------G*AU    2

    
    GGUUU----------------------------G*CU    2

    
    GUUUA----------------------------G*CC    2

    
    GUUUU----------------------------G*CC    2

    
    GCAUUGUGCGAAUGUAUGCUGUU--CUUAAGUGG*GC    1

    
    GCAUUGUGCGAAUGUGUGCUGUU--CUGAUAUGG*GC    1

    
    GUUUGUGA--UGUGUGGUAUAAUUCCAUAUA--A*GU    1

    
    GUUUU-----UAGUGUUGUU-----GCACUAUUG*AC    1

    
    CAA-------AGAUAUGAAGA----AUAUCUAAG*UU    1

    
    GAUUAA----AGGU--GAAGA------ACCUGUG*GU    1

    
    GUAUUAGUGUUUCGUCGC---------------U*UA    1

    
    GCAAGUGUACA----------------------G*GU    1

    
    GCAAGUCG-------------------------G*UU    1

    
    GCAAUACG-------------------------G*UC    1

    
    GCAUUGCG-------------------------G*CC    1

    
    GUAAGUGU-------------------------A*GU    1

    
    UGUUCGUU-------------------------G*CC    1

    
    ACUAAGA--------------------------C*AG    1

    
    ACUAUGC--------------------------G*CC    1

    
    ACUAUGU--------------------------U*CA    1

    
    AUCAUAG--------------------------G*AC    1

    
    GACGAUG--------------------------G*GC    1

    
    GAUUUUG--------------------------G*AC    1

    
    GCAUCGU--------------------------G*GC    1

    
    GCGUAGCA--------------------------*AG    1

    
    GCUAAGG--------------------------G*AU    1

    
    GCUAUGU--------------------------A*CU    1

    
    GCUUUGU--------------------------G*CC    1

    
    GGGAUAU--------------------------G*GU    1

    
    GUUUGAC--------------------------G*GC    1

    
    GUUUUAU--------------------------G*UC    1

    
    UCUAUGG--------------------------G*AU    1

    
    ACAGAG---------------------------A*GU    1

    
    ACGUAG---------------------------G*CC    1

    
    ACUAGG---------------------------C*AG    1

    
    ACUAUG---------------------------U*AU    1

    
    ACUUAG---------------------------A*CU    1

    
    ACUUGU---------------------------G*AC    1

    
    CAAUUA---------------------------U*AA    1

    
    CCUAGG---------------------------U*CA    1

    
    CCUCGG---------------------------U*UA    1

    
    CGUUUC---------------------------G*AC    1

    
    CUUAAC---------------------------U*UA    1

    
    GACAGU---------------------------G*CU    1

    
    GACCAG---------------------------U*GG    1

    
    GACUAG---------------------------U*GA    1

    
    GAGCUG---------------------------G*GC    1

    
    GAUGUG---------------------------G*AC    1

    
    GAUUCU---------------------------G*CC    1

    
    GAUUUG---------------------------A*AU    1

    
    GCAAGG---------------------------G*GC    1

    
    GCAUAG---------------------------G*CC    1

    
    GCGGAG---------------------------A*GU    1

    
    GCGGUG---------------------------U*CA    1

    
    GCGUAG---------------------------C*AG    1

    
    GCUCUG---------------------------A*CU    1

    
    GCUUCG---------------------------U*CU    1

    
    GCUUGG---------------------------G*AC    1

    
    GCUUGG---------------------------G*AU    1

    
    GCUUGU---------------------------G*CC    1

    
    GCUUUG---------------------------A*CU    1

    
    GGUUCG---------------------------G*AC    1

    
    GGUUUG---------------------------G*AC    1

    
    GUAUAU---------------------------U*CA    1

    
    GUGUCA---------------------------G*CC    1

    
    GUUCUG---------------------------G*UC    1

    
    GUUUAG---------------------------G*GC    1

    
    UCUAGG---------------------------G*AC    1

    
    UGCUAC---------------------------G*CC    1

    
    UGGACG---------------------------G*AC    1

    
    UGUAUC---------------------------G*AC    1

    
    UGUUCG---------------------------G*AC    1

    
    UGUUCG---------------------------G*CC    1

    
    UUUUAA---------------------------G*AC    1

    
    UUUUGG---------------------------A*AU    1

    
    ACACG----------------------------G*GU    1

    
    ACUAU----------------------------G*AU    1

    
    GAACA----------------------------G*GC    1

    
    GAAUG----------------------------G*AC    1

    
    GAAUU----------------------------G*UC    1

    
    GAUGU----------------------------G*CC    1

    
    GCAAG----------------------------G*GC    1

    
    GCGUA----------------------------G*GU    1

    
    GCUAG----------------------------G*GC    1

    
    GCUUG----------------------------G*CC    1

    
    GGUCC----------------------------G*GU    1

    
    GGUUG----------------------------U*CA    1

    
    GUAAA----------------------------G*AC    1

    
    GUUUA----------------------------G*CU    1

    
    UCACG----------------------------G*GC    1

    
    UCUAG----------------------------U*AA    1

    
    UCUCG----------------------------G*AC    1

    
    GGUA-----------------------------G*AC    1

    
    Omitted sequenced and counts

    
    UCAUUUAA--------------------------*--   20

    
    UCUUGAAA--------------------------*--    7

    
    CCAUUAAA--------------------------*--    6

    
    GCUUGACA--------------------------*--    6

    
    GGCAAA----------------------------*--    6

    
    GCUUUGACA-------------------------*--    5

    
    GCUUAGACA-------------------------*--    4

    
    GGUUCAAA--------------------------*--    4

    
    ACUUGAAAU-------------------------*--    3

    
    CAUCCAAAAAG-----------------------*--    2

    
    GACUAGAAAU------------------------*--    2

    
    GCUUUGACC-------------------------*--    2

    
    GCUUUGAUA-------------------------*--    2

    
    CCAUUGAA--------------------------*--    2

    
    CCAUUUAA--------------------------*--    2

    
    GAUUUAAA--------------------------*--    2

    
    GUUUAU---------------------------G*-C    2

    
    GAUACAA---------------------------*--    2

    
    GCUUGAAAUUAUUU--------------------*--    1

    
    ACAUCCGAGAAG----------------------*--    1

    
    CCUUUGAAAAC-----------------------*--    1

    
    CCUUUGUAAAG-----------------------*--    1

    
    ACAUUAAAAG------------------------*--    1

    
    CCAUCAAAAC------------------------*--    1

    
    GCUUUAAAAA------------------------*--    1

    
    UCUUUGGAAA------------------------*--    1

    
    CAGAAAAAG-------------------------*--    1

    
    GCAUUGGCA-------------------------*--    1

    
    UAAAAAACA-------------------------*--    1

    
    GCAUUGAC--------------------------*--    1

    
    GCUUGUCA--------------------------*--    1

    
    GCUUUGAC--------------------------*--    1

    
    UCAUUCAA--------------------------*--    1

    
    UCGUUAAA--------------------------*--    1

    
    ACUCGAC---------------------------*--    1

    
    GCUAGUC---------------------------*--    1

    
    GCUUGAA---------------------------*--    1

    
    GCUUGAC---------------------------*--    1

    
    UCUUGAA---------------------------*--    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

25.79 -280.96 6 3

Major groove intercalation

2

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

14.74 -259.22 7 4

3

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

12.11 -244.62 6 3

4

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

11.05 -332.61 6 3

5

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

7.37 -373.21 6 4

6

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

7.37 -411.23 6 4

7

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

5.79 -599.65 7 5

8

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

5.26 -570.70 5 3

9

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

4.21 -374.59 5 3

10

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

3.16 -516.62 6 3

Bulged stacked bases

11

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

2.63 -391.46 6 3

12

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

2.11 -227.69 8 4

13

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

1.58 -394.17 6 4

Major groove intercalation

14

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

1.58 -592.77 6 3

15

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

1.58 -598.30 6 3

16

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

1.58 -646.46 5 3

17

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

1.05 -272.47 6 4

Minor groove platform

18

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

1.05 -307.85 7 5

19

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

1.05 -308.65 6 4

20

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

1.05 -353.07 7 4

21

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

1.05 -550.59 6 4

22

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

1.05 -575.27 5 3

Left turn

23

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.53 -228.52 6 4

24

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.53 -288.98 8 5

25

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.53 -352.88 7 5

26

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.53 -437.09 7.5 5

27

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -154.62 9 6

28

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -182.96 11 8

Pseudoknot

29

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -188.24 7 5

30

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -199.09 10 8

31

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -199.22 8 6

32

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -212.32 8 5

33

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -213.47 8 6

34

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -215.49 8 6

35

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -219.40 9 7

36

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -219.58 9 6

37

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -220.24 9 7

38

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -224.63 10 7

39

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -227.56 8 5

40

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -228.43 11 9

41

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -241.53 15 12

Kink-turn related

42

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -244.59 8 5

43

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -246.53 7 6

44

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -254.02 7 5

45

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -256.31 9 8

46

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -263.90 14 13

47

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -265.88 8 6

48

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -270.41 7 6

Reverse kink-turn related

49

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -279.90 13 11

50

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -282.44 9 7

51

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -288.96 8 5

52

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -289.96 10 7

53

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -294.23 7 5

Vitamin B12 Aptamer

54

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -297.36 11 9

55

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -298.35 16 14

Kink-turn

56

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -300.19 9 7

57

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -302.97 11 9

58

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -309.50 8 6

59

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -311.30 8 6

60

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -314.03 10 8

61

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -314.55 11 9

62

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -321.26 8 5

cWH basepair with bulged bases

63

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -324.70 8 5

Kink-turn related

64

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -325.78 8 7

65

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -328.53 10 7

Reverse turn

66

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -330.69 11 10

67

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -340.57 8 6

68

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -340.63 14 12

Pseudoknot

69

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -341.34 6 4

Intercalated tWH

70

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -344.18 8 5

Pseudoknot

71

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -344.26 7 5

72

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -345.55 6 4

73

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -345.58 9 6

74

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -346.69 15 13

Pseudoknot

75

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -347.18 9 7

76

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -347.73 16 15

77

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -355.89 9 7

78

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -357.76 7 4

79

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -358.54 10 8

80

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -359.99 7 5

81

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -360.74 16 15

82

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -363.14 9 7

83

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -365.39 7 6

84

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -372.08 9 7

85

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -375.32 14 13

86

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -376.02 9 7

87

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -377.38 11 10

88

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -378.29 11 10

89

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -378.49 15 13

90

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -384.92 9 7

91

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -387.41 9 7

92

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -388.40 10 8

93

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -389.08 7 4

SSU/LSU pseudoknot

94

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -389.62 8 5

95

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -390.96 10 9

96

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -391.80 9 8

97

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -392.24 7 4

98

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -392.52 9 6

tSH-tHW

99

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -395.36 7 5

100

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -395.46 8 7

Kink-turn

101

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -398.89 7 6

Kink-turn

102

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -399.25 8 6

103

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -400.70 18 17

104

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -402.83 9 5

105

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -403.92 7 7

106

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -405.11 9 7

107

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -412.76 13 12

108

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -413.62 9 6

109

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -415.51 10 8

110

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -416.00 7 5

111

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -416.02 7 6

112

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -421.13 9 8

113

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -422.65 19 18

114

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -423.05 9 8

115

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -424.10 7 5

116

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -424.40 9 8

117

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -426.50 8 6

118

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -431.75 9 8

119

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -431.82 7 4

120

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -434.57 7 5

121

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -435.38 7 5

122

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -438.13 7 6

123

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -438.15 12 11

124

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -438.46 9 8

tSH-tHS-tHW

125

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -441.57 7 5

126

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -444.96 15 15

127

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -445.37 6.5 5

128

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -446.63 11 8

8x6 Sarcin-Ricin with inserted A; G-bulge

129

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -447.21 10 9

130

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -447.91 19 17

131

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -450.35 8 6

132

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -450.87 8 6

133

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -451.01 10 10

134

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -451.32 10 8

135

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -451.37 8 6

UAA/GAN related

136

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -452.17 16 14

137

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -452.26 15 13

138

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -453.12 9 8

139

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -454.33 9 6

Reverse kink-turn

140

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -454.41 8 6

tHW-tHW cross-strand stack

141

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -454.67 7 5

142

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -456.20 9 7

Sarcin-Ricin target in LSU H95; G-bulge

143

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -456.26 7 5

144

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -457.04 10 8

145

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -458.64 9 8

Minor groove platform related

146

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -459.66 9.5 9

147

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -463.72 13 12

148

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -467.76 8 5

180 degree turn

149

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -470.15 8 6

150

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -470.24 7 5

151

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -470.47 13 11

152

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -470.83 16 15

153

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -472.15 7 5

154

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -473.37 8 6

155

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -475.27 10 9

156

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -475.88 10 7

157

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -478.37 8 6

Kink-turn with embedded cWW pair

158

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -479.86 12 11

159

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -483.37 13 11

160

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -485.67 10 9

161

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -486.57 20 18

162

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -487.20 8 6

163

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -490.78 10 9

164

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -492.97 6.5 5

165

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -493.67 7 5

Kink-turn related

166

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -495.08 11 9

167

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -495.41 6 4

Multiple bulged bases

168

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -499.31 11 10

169

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -499.80 6 5

170

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -501.34 10 8

Kink-turn related

171

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -502.08 16 15

172

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -504.63 13 12

173

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -505.37 7 5

Kink-turn from U4

174

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -514.01 10 7

175

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -514.22 21 20

176

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -516.03 13 11

10x8 Sarcin-Ricin; G-bulge

177

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -520.20 11 7

Reverse kink-turn related

178

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -522.46 22 21

179

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -524.46 8 6

Kink-turn

180

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -526.54 10 8

181

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -527.60 7 6

182

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -527.64 8 6

183

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -529.21 11 9

184

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -530.85 10 7

185

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -532.11 6 4

186

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -534.14 11 8

Kink-turn

187

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -534.88 8 6.5

188

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -537.66 8 6

189

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -538.24 8 6

190

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -540.01 6 5

191

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -540.32 14 12

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

192

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -541.15 7 4

Isolated non-canonical cWW pair

193

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -543.59 9 7

194

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -543.61 11 8

195

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -547.76 9 7

UAA/GAN with extra stack

196

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -553.81 11 9

197

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -558.40 11 9

198

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -560.42 9 8

8x6 Sarcin-Ricin with inserted Y; G-bulge

199

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -562.58 7 5

tSH-tHW

200

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -562.79 11 10

tSH-tHW-tHH-tHS

201

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -564.42 8 7

Part of G-quadruplex

202

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -566.44 6 5

203

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -568.98 13 12

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

204

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -569.17 8 7

205

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -569.28 8 6

206

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -571.94 6 4

207

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -577.16 8 6

208

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -579.22 5 3

209

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -581.14 5 4

210

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -583.90 6 4

Major groove minor groove platform with intercalation; mini C-loop

211

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -584.16 8 6

Decoding loop related

212

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -584.97 9 6

213

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -585.56 8 7

Other IL

214

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -596.24 13 11

215

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -597.70 9 8

216

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -598.57 12 11

217

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -599.92 7 5

218

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -602.81 11 10

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

219

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -609.23 7 5

220

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -610.97 9 7

Kink-turn

221

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -610.99 8 6

222

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -612.82 10 8

7x7 Sarcin-Ricin with intercalated A; G-bulge

223

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -615.53 8 6

224

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -620.91 8 4

Multiple bulged bases

225

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -621.43 7 4

226

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -625.58 6 4

227

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -625.69 7 6

228

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -626.28 8 7

AAA cross-strand stack

229

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -627.87 5 3

230

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -629.39 8 5

231

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -629.86 8 5

232

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -632.82 8 6

Kink-turn related

233

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -640.74 13 12

234

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -641.31 9 7

235

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -644.09 11 11

Kink-turn

236

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -649.79 6 4

237

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -650.79 10 9

238

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -651.27 7 4

Major groove platform with intercalated tWH

239

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -653.17 8 5

240

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -653.33 6 4

241

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -654.27 8 6

242

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -655.23 8 6

6x5 Sarcin-Ricin; G-bulge

243

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -656.29 8 7

Triple sheared related

244

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -657.58 10 9

8x6 Sarcin-Ricin with bulged A; G-bulge

245

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -661.06 13 12

246

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -670.90 12 9

247

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -673.61 7 5

248

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -677.60 14 13

249

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -678.92 4 3

Major groove intercalation

250

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -679.03 8 8

251

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -693.71 13 12

252

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -694.56 5 3

Minor groove platform

253

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -696.36 8.5 8

Double sheared; A in syn; two near cWW pairs

254

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -697.58 9 9

Triple sheared with non-canonical cWW

255

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -709.23 7 4

256

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -709.75 9 8

8x7 Sarcin-Ricin; G-bulge

257

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -713.53 6 4

258

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -715.18 6 4

259

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -724.77 5 4

260

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -726.32 5 3

Minor groove platform, major groove intercalation

261

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -731.45 16 15

Kink-turn related

262

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -746.02 5 4

Major groove minor groove platform; mini C-loop

263

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -749.23 7 4

264

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -750.97 5 4

265

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -764.63 6 5

266

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -770.07 5 3

Major groove platform

267

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -775.83 6 5

268

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -776.14 6 4

269

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -790.71 11 11

270

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -793.86 5 3

Minor groove platform

271

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -801.16 8 6

272

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -805.97 6 4

273

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -807.28 8 7

UAA/GAN with extra cWW

274

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -808.63 18 18

275

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -810.05 5 4

276

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -817.44 6 4

277

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -823.18 5 4

278

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -827.40 5 4

279

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -830.08 6 5

280

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -840.00 10 8

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

281

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -845.04 8 6

UAA/GAN

282

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -851.50 8 6

283

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -856.27 8 6.5

284

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -862.40 10 8

8x7 Sarcin-Ricin; G-bulge

285

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -863.54 5 3

286

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -871.59 6 5

287

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -872.12 6 5

Decoding loop related

288

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -873.90 6 4

Intercalated cWS

289

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -877.39 9 6

290

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -898.97 10 9

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

291

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -911.55 7 5

292

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -913.28 6 4

293

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -914.67 10 9

294

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -919.54 12 11

295

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -922.65 5 4

296

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -923.27 16 15

297

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -923.30 8 7

7x6 Sarcin-Ricin; G-bulge

298

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -940.63 5 4

Single stack bend

299

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -941.55 12 9

300

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -942.31 7 6

UAA/GAN

301

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -955.24 6 4

Major groove platform with intercalation

302

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -963.26 11 10

303

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -963.96 8 6

304

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -965.64 8 6

305

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -966.48 8 7

Receptor of 11-nt loop-receptor motif

306

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -984.18 6 4

307

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -984.31 8 6

Minor groove platform

308

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -1025.19 6 5

Isolated non-canonical cWW contact

309

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -1063.62 6 5

310

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -1070.40 6 4

Major groove platform

311

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -1084.55 7 5

312

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -1160.12 7 5

313

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -1164.24 7 4

314

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -1182.20 7 6

UAA/GAN related

315

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -1209.44 7 5.5

UAA/GAN variation

316

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -1235.51 4 3

Multiple bulged bases

317

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -1248.58 5 3

318

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -1288.22 6 4

Minor groove platform

319

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -1323.76 5 4

Stack and bulge

320

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -1388.02 5 4

Single stack bend

321

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -1395.36 6 5

Isolated non-canonical cWW pair

322

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -1401.66 6 4

323

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -1406.21 5 4

Single bulged U

324

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -1424.10 8 6

5x5 Sarcin-Ricin with intercalated A; G-bulge

325

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -1424.35 5 4

Single bulged G

326

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -1429.43 5 4

Single bulged C

327

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -1432.65 5 4

Isolated non-canonical cWW pair

328

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -1433.20 5 4

Single bulged A

329

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -1446.87 7 5

330

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -1522.49 5 4

Isolated non-canonical cWW pair

331

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -1540.93 7 5

332

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -1591.82 6 5

Double sheared

333

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -1856.12 13 11

334

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -1929.05 13 13

335

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -2125.00 9 7

tWH-tWH-tHW-tHW

336

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -2151.40 8 5

337

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -2208.95 10 9

338

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -2251.09 9 6

Kink-turn

339

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -2259.20 10 9

Kink-turn

340

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -2277.19 10 9

Kink-turn related

341

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -2284.60 9 7

tSH-tSH-tHH-tHS

342

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -2287.82 11 9

Kink-turn

343

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -2378.56 11 9

344

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -2401.46 8 6

UAA/GAN with tHH

345

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -2409.49 11 11

Kink-turn

346

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -2436.10 10 9

Kink-turn

347

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -2590.88 8 6

Receptor of 11-nt loop-receptor motif

348

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -2626.49 10 7

349

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -2634.04 7 6

350

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -2693.02 8 7

351

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -2752.79 7 6

tSH-tHH-tHS

352

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -2922.15 8 7

Symmetric double minor groove platform

353

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -3172.53 8 7

cWH basepair and non-canonical AC

354

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -3244.43 7 5

Tandem non-canonical cWW pairs

355

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -3302.84 7 5

356

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -3440.63 7 6

Double sheared

357

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -3509.02 6 5

Double sheared with non-canonical cWW

358

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -3574.90 8 6

Part of G-quadruplex

359

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -3743.87 7 5

tSH-tHW

360

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -3769.73 8 6

361

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -3804.42 6 5

Triple non-canonical cWW pairs

362

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -3883.36 7 6

363

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -4020.11 6 5

Tandem non-canonical cWW pairs

364

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -4066.39 12 12

Bacterial 5S Loop E

365

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -4091.55 5 3

Multiple bulged bases

366

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -4103.43 10 8

Other IL

367

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -4112.44 6 4

368

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -4121.86 5 3

Major groove platform; stack outside cWW

369

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -4140.47 7 5

370

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -4144.51 9 7

371

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -4164.84 6.5 5

372

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -4187.83 7 5

373

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -4216.25 5 4

374

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -4224.08 5 4

Isolated non-canonical cWW pair

375

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -4264.11 6 5

Isolated tWW turn

376

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -4268.31 5 5

Isolated cWS basepair

377

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -4272.12 6 5

Isolated tHS basepair with bulges

378

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -4290.63 6 5

Isolated cWH basepair

379

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -4354.71 7 5

380

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -4360.41 6 5

Tandem non-canonical cWW pairs

381

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -4490.05 8 7

382

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4548.68 18 17

383

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -4599.85 8 7

tSH-tWH-tHS-cWW

384

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4719.87 13 11

385

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -4835.41 9 7

tSH-tHW-tWH-tHS

386

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -5055.62 10 9

387

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -5242.36 8 7

388

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5298.34 12 10

389

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -5322.86 9 8

Kink-turn with non-sequential stacking

390

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5349.92 11 9

391

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5354.84 11 9

392

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -5447.28 8 7

Quadruple sheared

393

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -5627.51 7 5

394

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -6059.95 9 7

Triple sheared

395

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6231.84 9 7

396

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -6278.65 9 6

397

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -6510.03 8 6

398

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -6690.94 5 4

C-loop

399

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -6758.93 7 5.5

400

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -6761.98 8 6

Other IL

401

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -6833.96 7 7

tSH-tWH-tHS

402

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -6883.39 9 7

Kink-turn

403

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -6973.75 6 4.5

8-nt loop receptor

404

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -7021.06 7 6

C-loop with bulged stacked A's

405

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -7394.69 7 7

Triple sheared

406

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -8192.14 6 4

Multiple bulged bases

407

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -8206.45 6 4

408

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -8206.62 5 3

C-loop

409

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -8209.53 7 4

410

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -8256.79 6 5

411

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -8331.23 6 5

Isolated non-canonical cWW pair

Coloring options: