RNA 3D Hub

JAR3D Query RF03087-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF03087 maps to these 30 chains: 9ISV|1|A, 9J3R|1|A, 9J3R|1|B, 9J3R|1|C, 9J3R|1|D, 9J3T|1|A, 9J3T|1|B, 9J3T|1|C, 9J3T|1|D, 9J3T|1|E, 9J3T|1|F, 9J3T|1|G, 9J3T|1|H, 9MM6|1|A, 9MM6|1|E, 9MM6|1|I, 9MM6|1|M, 9MM6|1|Q, 9MM6|1|U, 9MM6|1|Y, 9MM6|1|c, 9MME|1|U, 9MME|1|Y, 9MME|1|c, 9MME|1|g, 9MME|1|k, 9MME|1|o, 9MME|1|s, 9MME|1|w, 9MMG|1|c See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 1 Internal loop

Column numbers: 29-48, 69-73 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    G-UGA--------AGAU--G*C-UGC   35

    
    G-UGA--------AGA---A*U--GC   21

    
    G-UGA--------AGA---G*U--GC   16

    
    G-UGU--------AGAU--A*U-UGC   14

    
    G-UGA--------AGAU--A*U-UGC   10

    
    G-UGU--------AUG---C*G-GUC    8

    
    G-UGC--------AGA---G*U--GC    8

    
    G-UGA--------AGA---G*U-UGC    7

    
    A-UGA--------ACAA--A*U---U    7

    
    C-UGA--------AGA---G*U--GG    7

    
    G-UGA--------AUAA--A*U---C    7

    
    G-UGUGAGAAAUCGAA---A*U---C    5

    
    G-UGA--------AGAU--C*G-UGC    4

    
    G-UGA--------AGA---C*G--GC    4

    
    G-UGC--------AGA---G*C--GC    4

    
    G-UGG--------AGA---G*U--GC    4

    
    G-UGA--------AAA---C*G---C    4

    
    G-UGC--------ACUAAAG*C-CUC    3

    
    G-UGA--------AGAA--G*C-UGC    3

    
    A-UGA--------AAAA--C*G--G-    3

    
    G-UGA--------AGU---C*G--GC    3

    
    G-UGC--------AGA---A*U--GC    3

    
    G-UGC--------AGA---U*A--GC    3

    
    A-UGU--------AUA---A*U---U    3

    
    G-UGU--------AU----U*G--UC    3

    
    G-UGUGCGAAAGCGAA---A*U---C    2

    
    G-UGA--------AGAU--G*U-UGC    2

    
    G-UGC--------AGAU--A*U-UGC    2

    
    G-UGC--------AGAU--G*C-UGC    2

    
    G-UGC--------AGAU--U*A-UGC    2

    
    G-UGU--------AGAU--G*C-UGC    2

    
    G-UGU--------AGAU--U*A-UGC    2

    
    G-UGA--------AGA---A*U-UGC    2

    
    G-UGA--------AGA---G*C-UGC    2

    
    UCUGU--------AA----G*U-AGA    2

    
    G-UGA--------ACAA--A*U---C    2

    
    G-UGC--------AGA---C*G--GC    2

    
    G-UGC--------AUAA--C*G---C    2

    
    G-UGU--------AGA---A*U--GC    2

    
    G-UUA--------UAAA--A*U---C    2

    
    C-UGU--------AA----G*U--AG    2

    
    G-UGA--------AUG---U*G---C    2

    
    G-UGC--------AUA---A*U---C    2

    
    G-UGU--------AG----A*U--GC    2

    
    G-UGU--------AGA---U*G---C    2

    
    G-UGU--------AUA---A*U---C    2

    
    U-UGG--------AAA---C*G---G    2

    
    A-UGA--------AA----A*U---U    2

    
    G-UGG--------AU----G*C---C    2

    
    G-UAA--------CC-----*---GC    2

    
    G-UGC--------ACUAAAG*CCCUC    1

    
    G-UGC--------ACUAAAG*C-AUC    1

    
    G-UGC--------AGAGG-G*C-UGC    1

    
    G-UGU--------AGAU--G*CCUGC    1

    
    U-UGG--------AAACA-C*G-UGG    1

    
    G-UGA--------AUAAA-G*C--UC    1

    
    G-UGC--------AGAG--G*C-UGC    1

    
    G-UGC--------AGAU--C*G-UGC    1

    
    G-UGC--------AGAU--G*U-UGC    1

    
    G-UGC--------AUGA--A*U-UGC    1

    
    G-UGG--------AUAA--G*C-GCC    1

    
    G-UGU--------AGAU--C*G-UGC    1

    
    G-UGU--------AUAAA-U*A--UC    1

    
    G-UUA--------AGAU--C*G-UGC    1

    
    A-UGU--------AUGA--A*U--GU    1

    
    G-UGA--------AGAA--G*U--GC    1

    
    G-UGC--------AGA---G*U-UGC    1

    
    G-UGC--------AGAA--U*A--GC    1

    
    G-UGC--------AUAA--A*U--UC    1

    
    G-UGC--------CAAA--G*U--UC    1

    
    G-UGU--------AUA---A*U-GGC    1

    
    G-UUA--------UUAAA-A*U---C    1

    
    UCUGU--------AA----G*U-AGG    1

    
    A-UGA--------AAGA--C*G---U    1

    
    A-UGA--------ACAA--U*A---U    1

    
    A-UGA--------CAGA--C*G---U    1

    
    A-UGC--------ACA---A*U--UU    1

    
    G-UCA--------UAAA--A*U---C    1

    
    G-UCA--------UAAA--U*A---C    1

    
    G-UGA--------AGA---U*A--GC    1

    
    G-UGA--------AUA---G*C--AC    1

    
    G-UGC--------ACUA--A*U---C    1

    
    G-UGC--------UAAA--C*G---C    1

    
    G-UGU--------AGA---G*U--GC    1

    
    G-UGU--------AUG---A*U--GC    1

    
    G-UUA--------AAAA--G*U---C    1

    
    G-UUA--------GAAA--A*U---C    1

    
    G-UUG--------AAG---C*G--UC    1

    
    U-UGA--------UAAA--C*G---G    1

    
    A-UGC--------ACA---A*U---U    1

    
    G-UGA--------AAA---A*U---C    1

    
    G-UGA--------AGA---U*G---C    1

    
    G-UGC--------ACA---A*U---C    1

    
    G-UGC--------AGA---C*G---C    1

    
    G-UGC--------AGA---U*G---C    1

    
    G-UGU--------AAA---C*G---C    1

    
    U-UGG--------AAAC---*---GG    1

    
    U-UUG--------UAA---U*A---A    1

    
    A-UAA--------UU----C*G---U    1

    
    G-UGA--------AG----U*G---C    1

    
    G-UGG--------AG----U*G---C    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

8.62 -73.59 6 4

2

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

7.24 -73.00 6 5

3

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

3.45 -106.02 7 6

Minor groove platform

4

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

3.45 -496.29 5 3

5

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

3.10 -60.51 8 5

6

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

3.10 -104.09 6 5

7

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

1.72 -120.35 8 5

8

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

1.38 -119.28 6 5

9

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

1.38 -179.93 7 5

SSU/LSU pseudoknot

10

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

1.03 -176.43 5 4

11

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

1.03 -230.10 9 6

12

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.69 -90.35 9 5

13

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.69 -103.55 8 5

14

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.69 -107.80 9 6

15

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.69 -163.07 7 5

16

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.69 -261.77 7 3

17

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.69 -329.22 8 5

18

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.34 -76.53 9 6

19

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.34 -77.26 8 5

20

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.34 -89.06 8 5

cWH basepair with bulged bases

21

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.34 -92.06 8 6

22

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.34 -203.41 7 5

Kink-turn related

23

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -64.84 8 6

24

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -65.57 8 6

25

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -71.09 8 6

26

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -85.62 8 5

Vitamin B12 Aptamer

27

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -95.13 8 5

28

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -95.16 6 4

29

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -95.38 10 7

30

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -96.20 7 6

31

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -96.90 8 5

32

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -107.44 10 8

Reverse kink-turn related

33

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -108.22 9 7

34

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -109.84 9 6

35

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -110.32 10 8

36

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -113.08 9 7

37

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -113.48 9 7

38

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -113.58 9 7

39

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -118.23 10 7

40

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -119.51 7 6

41

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -120.90 7 5

42

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -121.49 10 7

43

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -126.59 9 7

44

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -127.22 8 6

45

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -127.73 9 9

46

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -128.48 8 6

47

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -131.13 8 5

48

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -131.83 8 5

49

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -135.18 10 7

50

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -136.45 11 8

51

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -140.23 6 5

52

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -141.43 9 5

53

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -141.65 10 7

Reverse turn

54

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -150.45 10 8

55

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -153.32 7 5

56

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -153.91 9.5 7

57

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -156.67 10 8

58

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -157.54 9 7

59

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -158.23 6 5

UAA/GAN related

60

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -160.38 10 8

61

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -164.84 9 6

62

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -169.83 10 9

63

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -169.86 12 10

64

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -171.42 6 4

65

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -171.52 9 7

66

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -171.94 13 10

Kink-turn related

67

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -173.97 10 8

Pseudoknot

68

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -176.79 8 5

Intercalated tWH

69

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -176.89 10 8

70

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -178.65 11 9

71

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -181.97 9 6

Pseudoknot

72

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -183.16 9 7

73

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -183.92 12 10

74

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -185.29 9 6

Major groove intercalation

75

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -189.37 10 8

76

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -191.19 12 9

77

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -193.06 8 5

78

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -194.97 11 9

79

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -195.26 7 5

80

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -198.35 7 5

81

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -198.37 14 12

82

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -200.09 8 6

83

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -200.59 9 8

84

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -204.36 10 9

85

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -207.30 9 7

86

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -211.50 11 9

87

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -212.22 15 12

88

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -214.93 7 5

89

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -215.23 9 6

90

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -216.97 11 9

91

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -217.90 14 11

Pseudoknot

92

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -220.92 15 12

Kink-turn

93

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -222.40 7 6

94

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -227.96 10 8

95

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -229.48 8 5

96

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -230.24 11 8

97

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -237.55 13 11

98

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -247.98 12.5 11

Pseudoknot

99

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -250.06 10 9

100

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -252.28 10 9

101

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -257.30 10 6

Reverse kink-turn related

102

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -262.10 10 7

103

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -262.17 8 5

Kink-turn

104

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -263.79 9 6

105

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -264.72 9 5

tSH-tHW

106

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -264.88 15.5 13

107

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -265.58 13 12

108

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -267.00 6 6

109

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -267.84 10 7

110

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -268.00 8 5

111

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -269.98 7 5

tSH-tHS-tHW

112

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -271.68 8 7

113

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -272.15 6 5

Kink-turn

114

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -282.45 7 6

115

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -286.19 7 6

116

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -286.95 16 14

117

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -287.94 6 5

118

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -290.20 8 4

119

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -290.31 10 7

120

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -291.14 9 6

121

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -291.63 8 5

Kink-turn related

122

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -291.72 8 5

123

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -296.39 7 5

124

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -299.50 10 8

125

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -301.65 8 7

126

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -302.01 9 6

Reverse kink-turn

127

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -302.62 8 5

128

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -304.64 8 6

129

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -304.96 6 5

130

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -305.60 8 6

tHW-tHW cross-strand stack

131

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -307.21 10 6

132

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -309.93 6 4

133

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -311.61 14 13

134

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -315.97 9 5

135

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -317.66 10 8

136

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -319.37 12 10

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

137

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -319.38 10 8

138

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -321.01 17 15

139

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -323.23 10 7

140

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -323.36 16 14

141

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -327.46 15 14

142

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -332.20 11 7

8x6 Sarcin-Ricin with inserted A; G-bulge

143

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -333.02 8 6

144

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -334.04 8 6

Kink-turn

145

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -338.43 8 6

146

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -338.81 15 12

147

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -339.22 9 7

Sarcin-Ricin target in LSU H95; G-bulge

148

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -343.56 10 7

Kink-turn

149

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -343.60 9 7

150

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -343.84 10 8

Kink-turn related

151

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -343.87 8 5

180 degree turn

152

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -348.45 7 4

Kink-turn

153

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -349.63 8 5

Kink-turn from U4

154

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -349.71 9 6

155

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -352.08 9 8

156

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -356.86 8 6

UAA/GAN with extra stack

157

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -358.02 8 7

Part of G-quadruplex

158

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -358.98 9 8

159

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -359.25 18 16

160

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -359.36 10 6

Kink-turn

161

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -361.22 11 8

162

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -365.22 9 6

163

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -365.89 19 17

164

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -367.69 6 5

165

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -369.57 9 7

166

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -369.94 10 9

167

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -372.31 10 7

168

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -374.91 7 5

Major groove intercalation

169

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -375.51 8 6

170

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -380.98 17 16

171

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -382.87 14 12

172

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -383.35 11 9

173

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -383.67 9 7

Kink-turn with embedded cWW pair

174

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -385.24 8 6

175

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -387.45 11 9

176

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -388.67 7 5

177

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -389.16 11 9

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

178

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -389.53 8 4

tSH-tHW

179

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -390.15 10 9

180

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -391.60 8 5

Kink-turn related

181

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -392.75 12 9

10x8 Sarcin-Ricin; G-bulge

182

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -395.58 9 7

183

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -396.28 10 8

184

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -396.44 8 5

185

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -397.17 11 7

186

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -402.02 12 8

187

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -402.56 8 5

188

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -403.26 6 5

189

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -403.39 10 8

tSH-tHW-tHH-tHS

190

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -404.05 9 7

191

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -407.07 6 5

192

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -407.20 7 6

Other IL

193

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -407.26 7 5

Isolated non-canonical cWW pair

194

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -409.92 7 6

195

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -410.13 8 7

8x6 Sarcin-Ricin with bulged A; G-bulge

196

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -411.00 8 7

8x6 Sarcin-Ricin with inserted Y; G-bulge

197

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -413.70 10 7

198

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -418.00 9 8

Minor groove platform related

199

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -418.40 9 6

Triple sheared related

200

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -422.08 11 9

201

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -424.35 7 6

202

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -425.50 9 6

6x5 Sarcin-Ricin; G-bulge

203

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -428.42 8 6

Decoding loop related

204

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -429.04 7 6

205

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -434.41 10 8

206

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -434.76 10 7

207

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -435.89 6 5

208

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -436.51 8 5

209

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -437.44 8 7

210

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -438.43 7 6

211

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -439.10 8 5

212

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -439.79 7 5

213

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -441.06 10 9

214

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -448.32 7 5

215

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -449.16 6 5

216

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -451.43 10 7

7x7 Sarcin-Ricin with intercalated A; G-bulge

217

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -454.06 10 9

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

218

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -456.72 8 7

Double sheared; A in syn; two near cWW pairs

219

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -457.11 21 19

220

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -457.20 8 6

221

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -461.44 7 7

Triple sheared with non-canonical cWW

222

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -466.13 8 6

AAA cross-strand stack

223

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -466.19 21 20

224

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -471.12 14 12

225

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -475.77 8 5

226

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -485.05 7 6

227

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -485.21 8 7

228

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -496.11 8 7

8x7 Sarcin-Ricin; G-bulge

229

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -496.30 13 11

230

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -507.97 7 4

Multiple bulged bases

231

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -510.88 12 10

232

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -512.69 6 4

233

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -523.70 10 10

234

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -532.11 7 5

Major groove minor groove platform with intercalation; mini C-loop

235

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -539.02 8 5

236

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -543.29 7 6

UAA/GAN with extra cWW

237

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -551.06 7 5

238

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -552.99 7 5

239

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -564.18 9 7

240

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -566.71 9 7

241

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -571.73 5 4

242

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -576.89 6 5

243

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -582.06 8 6

Bulged stacked bases

244

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -582.57 7 6

245

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -583.02 6 5

Left turn

246

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -596.90 7 5

247

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -597.02 6 5

248

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -603.02 7 5

249

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -605.09 8 6

250

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -606.74 7 5

UAA/GAN

251

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -610.28 6 5

252

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -611.04 6 5

253

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -624.58 7 5

254

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -631.11 15 13

Kink-turn related

255

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -633.44 7 6

256

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -635.35 7 5

257

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -639.66 8 5

258

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -646.62 7 6

259

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -649.26 7 5

260

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -650.06 8 6

UAA/GAN

261

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -651.86 7 5

262

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -658.30 6 5

263

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -667.52 8 6

264

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -668.76 7 5

265

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -671.54 7 5

266

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -675.10 8 6

267

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -677.38 7 5

268

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -679.21 9 6

Multiple bulged bases

269

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -688.33 18 17

270

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -688.42 13 12

271

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -688.50 6 5

Major groove intercalation

272

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -691.95 7 5

Major groove platform with intercalated tWH

273

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -694.20 6 5

274

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -704.63 6 4

275

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -721.50 6 6

276

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -723.68 8 5

277

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -732.67 7 6

278

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -735.86 7 5

Decoding loop related

279

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -743.67 7 5

UAA/GAN related

280

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -750.41 7 6

281

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -752.43 7 7

Minor groove platform

282

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -764.38 6 5

UAA/GAN variation

283

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -771.58 7 5

284

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -797.60 7 5

285

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -808.79 8 7

286

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -811.23 7 6

287

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -814.75 7 6

288

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -851.02 8 6

289

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -871.70 11 9

290

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -908.28 6 5

Major groove minor groove platform; mini C-loop

291

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -917.65 6 5

Minor groove platform

292

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -943.89 7 5

Minor groove platform, major groove intercalation

293

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -956.08 6 5

Major groove platform

294

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -980.42 8 6

295

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -991.47 6 6

Minor groove platform

296

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -992.52 10 7

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

297

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -999.14 9 7

8x7 Sarcin-Ricin; G-bulge

298

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -1054.82 11 9

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

299

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -1056.44 9 8

300

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -1060.84 7 5

Intercalated cWS

301

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -1082.01 12 10

302

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -1084.28 6 5

303

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -1086.53 6 5

Isolated non-canonical cWW contact

304

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -1089.16 8 7

7x6 Sarcin-Ricin; G-bulge

305

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -1098.83 7 5

306

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -1133.68 7 5

Major groove platform with intercalation

307

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -1153.35 8 7

308

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -1156.41 8 6

309

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -1163.34 11 8

310

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -1185.67 7 6

Single stack bend

311

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -1199.13 6 5

312

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -1233.46 8.5 7

313

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -1253.09 6 4

314

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -1322.07 7 5

315

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -1337.02 9 6

Kink-turn

316

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -1368.48 8 6

Kink-turn

317

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -1412.83 10 8

tWH-tWH-tHW-tHW

318

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -1444.52 9 7

Kink-turn

319

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -1461.23 7 4

Kink-turn

320

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -1471.75 9 8

321

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -1484.80 7 6

322

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -1488.76 7 6

tSH-tSH-tHH-tHS

323

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -1550.51 6 6

UAA/GAN with tHH

324

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -1559.16 10 7

Kink-turn

325

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -1587.75 9 7

Other IL

326

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -1598.53 8 7

327

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -1629.49 9 6

328

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -1685.23 10 9

Bacterial 5S Loop E

329

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -1692.74 8 7

330

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -1700.81 7 5

331

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -1720.43 8 7

332

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -1773.22 8 6

333

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -1778.70 8 5

Receptor of 11-nt loop-receptor motif

334

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -1799.65 8 7

tSH-tHH-tHS

335

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -1806.03 8 7

tSH-tWH-tHS-cWW

336

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -1824.08 8 6

5x5 Sarcin-Ricin with intercalated A; G-bulge

337

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -1879.92 9 7

tSH-tHW-tWH-tHS

338

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -1924.75 8 5

Receptor of 11-nt loop-receptor motif

339

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -1944.99 7 5

Double sheared

340

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -1958.41 8 5

Kink-turn

341

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -2013.46 7 5

Isolated non-canonical cWW pair

342

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -2022.80 5 4

Isolated non-canonical cWW pair

343

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -2026.98 8 6

cWH basepair and non-canonical AC

344

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -2128.03 8 6

Quadruple sheared

345

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -2146.30 8 6

Tandem non-canonical cWW pairs

346

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -2154.06 7 6

347

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -2165.24 7 6

Isolated non-canonical cWW pair

348

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -2245.46 7 6

Double sheared

349

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -2276.27 10 7

Part of G-quadruplex

350

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -2309.78 9 6

Triple sheared

351

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -2339.66 8 6

Double sheared with non-canonical cWW

352

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -2429.66 7 5

tSH-tHW

353

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -2458.43 10 7

354

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -2515.77 8 6

355

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -2521.92 8 6

Triple non-canonical cWW pairs

356

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -2558.95 8 6

357

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -2612.91 9 7

Other IL

358

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -2667.26 7 6

Tandem non-canonical cWW pairs

359

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -2670.53 8 6

tSH-tWH-tHS

360

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -2689.34 7 5

361

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -2841.60 6 5

Tandem non-canonical cWW pairs

362

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -2842.71 7 5

363

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -2878.24 7 6

Triple sheared

364

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -2962.03 6 5

365

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -2992.15 9 8

Kink-turn related

366

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -3126.82 9 6

367

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -3147.93 6 5

Isolated non-canonical cWW pair

368

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -3196.08 7 6

Isolated cWS basepair

369

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -3216.35 8 6

Isolated tWW turn

370

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -3227.46 7 6

Isolated tHS basepair with bulges

371

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -3232.89 6.5 6

Isolated cWH basepair

372

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -3248.59 9 7

Kink-turn with non-sequential stacking

373

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -3542.60 8 6

374

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -3555.21 8 5

375

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -3558.65 8 6

376

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -3999.50 12 10

377

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -4080.67 12 11

378

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -4298.95 7 6

Major groove platform

379

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -4452.50 7 6

C-loop with bulged stacked A's

380

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -4509.32 8 6

8-nt loop receptor

381

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4517.58 16 15

382

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4690.84 12 9

383

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -4811.17 8 5

384

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -4997.90 9 8

385

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5185.57 10 8

386

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -5390.07 7 5

Minor groove platform

387

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -5398.29 7 4

388

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -5401.09 7 5

Multiple bulged bases

389

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -5421.39 7 6

Stack and bulge

390

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -5517.06 9 7

391

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -5520.33 7 6

Single stack bend

392

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -5526.77 9 6

393

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -5535.34 6 6

Single bulged U

394

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -5544.28 6 6

Single bulged A

395

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -5545.92 7 6

Single bulged G

396

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -5566.67 8 7

Single bulged C

397

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -5701.29 10 8

398

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6172.00 8 7

399

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -6667.09 7 6

Isolated non-canonical cWW pair

400

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -6758.60 10 8

Symmetric double minor groove platform

401

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -8100.92 10 7

402

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8594.06 6 5

C-loop

403

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -9999.00 9 6

404

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 5 4

405

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -9999.00 6 5

Multiple bulged bases

406

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 7

407

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 7 6

408

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9999.00 6 5

Major groove platform; stack outside cWW

409

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9999.00 7 6

Multiple bulged bases

410

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 8 6

411

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 7 5

C-loop

Coloring options: