JAR3D
Query RF03087-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Rfam family RF03087 maps to these 30 chains: 9ISV|1|A, 9J3R|1|A, 9J3R|1|B, 9J3R|1|C, 9J3R|1|D, 9J3T|1|A, 9J3T|1|B, 9J3T|1|C, 9J3T|1|D, 9J3T|1|E, 9J3T|1|F, 9J3T|1|G, 9J3T|1|H, 9MM6|1|A, 9MM6|1|E, 9MM6|1|I, 9MM6|1|M, 9MM6|1|Q, 9MM6|1|U, 9MM6|1|Y, 9MM6|1|c, 9MME|1|U, 9MME|1|Y, 9MME|1|c, 9MME|1|g, 9MME|1|k, 9MME|1|o, 9MME|1|s, 9MME|1|w, 9MMG|1|c See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.
Loop 23 Hairpin loop
Column numbers: 449-487 - View nucleotides in PDB file(s)
Scored sequences and counts
C---------------UGU-------------------G 32
U---------------CGGUG-----------------A 17
G---------------CGGUG-----------------C 16
U---------------GAAUA-----------------G 14
U---------------GAAUA-----------------A 13
C---------------CAGUG-----------------G 10
U---------------CUGUG-----------------A 9
U---------------CAGUG-----------------A 8
U---------------UAAAA-----------------G 7
C---------------AGU-------------------G 7
CU--------------CGAAA----------------GG 6
GU--------------CAAAA----------------GC 6
GU--------------GAAUA----------------GC 6
C---------------CUGUG-----------------G 6
C---------------GGU-------------------G 6
UCACA-----------GCAA--------------UGGGG 5
G---------------CAGUG-----------------C 5
A---------------GAAA------------------U 5
GU--------------UUAAUC---------------GC 4
G---------------AGGUU-----------------C 4
C---------------GUG-------------------G 4
UG--------------GAAA-----------------CA 3
A---------------CGGUG-----------------U 3
A---------------CUGUG-----------------U 3
G---------------AAGUU-----------------C 3
G---------------CUGUG-----------------C 3
U---------------GAGAA-----------------G 3
A---------------GCAA------------------U 3
----------------GUGAA------------------ 3
C---------------CGGUG-----------------G 2
G---------------CGUGU-----------------C 2
G---------------CUGUG-----------------U 2
U---------------CAAAA-----------------G 2
U---------------UACUA-----------------A 2
C---------------AGAC------------------G 2
U---------------ACGC------------------A 2
C---------------ACU-------------------G 2
U---------------UUU-------------------A 2
----------------UGUG------------------- 2
AGUUUUGAGUUGACUCUUAA---GAGUUGAGGAGAAAAC 1
AAGGGGAUUU------ACGGA--------AAA---CC-U 1
UCACA-----------GUCAAA------------UGGGA 1
UGGCA-----------GUAAUA------------UGUUG 1
CCACA-----------GCAA--------------UGGGG 1
UCU-------------CGAAA---------------GGA 1
C---------------UUGAGAU--------------AG 1
AU--------------GGAAU----------------AU 1
CC--------------CGGAA----------------GG 1
CU--------------GAACA----------------GG 1
U---------------GGAUAAG---------------A 1
UU--------------CUAGG----------------AA 1
UU--------------UGUAU----------------AG 1
C---------------UUUUG----------------AG 1
UG--------------UUGG-----------------UA 1
UU--------------GAGA-----------------UA 1
A---------------CUCGG-----------------U 1
A---------------CUGUA----------------A- 1
C---------------AACUU-----------------G 1
C---------------GACAG-----------------G 1
C---------------GGUGA-----------------G 1
C---------------UAAUA-----------------C 1
C---------------UUGCA-----------------G 1
G---------------AUUCG-----------------U 1
G---------------GUAUA-----------------C 1
U---------------CUGUG-----------------C 1
U---------------GAAAA-----------------G 1
U---------------GAUAA-----------------G 1
U---------------UAACA-----------------G 1
U---------------UAAUA-----------------G 1
U---------------UUAUA-----------------A 1
U---------------UUUUA-----------------A 1
A---------------CUGU------------------U 1
A---------------GUAA------------------U 1
C---------------AGA------------------UG 1
C---------------AGAU------------------G 1
C---------------GAAA------------------G 1
C---------------GUAA------------------G 1
G---------------GAAA------------------C 1
----------------CACUG------------------ 1
----------------CAGUG------------------ 1
A---------------ACU-------------------U 1
C---------------UCU-------------------G 1
U---------------AAG-------------------A 1
U---------------GGU-------------------A 1
U---------------UGU-------------------A 1
U---------------UGU-------------------G 1
----------------ACGU------------------- 1
----------------AGUU------------------- 1
Omitted sequenced and counts
--------------------------------------- 7
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_59843.1
Basepair signature:
|
45.58 | -207.49 | 3 | 2 |
|
| 2 |
Motif group HL_48417.5
Basepair signature:
|
37.10 | -104.88 | 3 | 2 |
|
| 3 |
Motif group HL_75660.5
Basepair signature:
|
37.10 | -414.06 | 2 | 2 |
|
| 4 |
Motif group HL_50537.6
Basepair signature:
|
33.57 | -112.51 | 4 | 3 |
tRNA anticodon loop with synthetase |
| 5 |
Motif group HL_59330.1
Basepair signature:
|
30.74 | -780.64 | 5 | 4 |
|
| 6 |
Motif group HL_56334.1
Basepair signature:
|
28.98 | -484.16 | 3 | 2 |
Mini UNCG |
| 7 |
Motif group HL_53890.2
Basepair signature:
|
26.86 | -131.44 | 3 | 2 |
|
| 8 |
Motif group HL_07886.3
Basepair signature:
|
26.15 | -134.38 | 4 | 3 |
|
| 9 |
Motif group HL_13189.1
Basepair signature:
|
26.15 | -428.10 | 3 | 3 |
|
| 10 |
Motif group HL_04783.2
Basepair signature:
|
25.80 | -137.05 | 3 | 3 |
|
| 11 |
Motif group HL_38901.2
Basepair signature:
|
25.44 | -436.29 | 3 | 2 |
tRNA D-loop |
| 12 |
Motif group HL_56131.2
Basepair signature:
|
25.09 | -135.94 | 4 | 3 |
|
| 13 |
Motif group HL_81100.2
Basepair signature:
|
25.09 | -1684.04 | 3 | 2 |
|
| 14 |
Motif group HL_69752.2
Basepair signature:
|
24.73 | -418.52 | 4 | 3 |
|
| 15 |
Motif group HL_70782.2
Basepair signature:
|
24.38 | -427.22 | 4 | 3 |
|
| 16 |
Motif group HL_80922.2
Basepair signature:
|
22.97 | -134.50 | 4 | 3 |
|
| 17 |
Motif group HL_48778.2
Basepair signature:
|
22.97 | -474.06 | 3 | 2 |
Mini UNCG |
| 18 |
Motif group HL_32346.4
Basepair signature:
|
22.61 | -520.22 | 3 | 3 |
|
| 19 |
Motif group HL_50006.2
Basepair signature:
|
22.26 | -198.49 | 4 | 3 |
|
| 20 |
Motif group HL_86870.2
Basepair signature:
|
21.55 | -136.20 | 3 | 2 |
|
| 21 |
Motif group HL_80709.3
Basepair signature:
|
19.79 | -655.99 | 3 | 2 |
|
| 22 |
Motif group HL_60914.1
Basepair signature:
|
19.79 | -713.43 | 4 | 3 |
|
| 23 |
Motif group HL_51447.1
Basepair signature:
|
19.79 | -982.25 | 4 | 3 |
|
| 24 |
Motif group HL_27483.1
Basepair signature:
|
19.43 | -247.66 | 3 | 3 |
|
| 25 |
Motif group HL_38168.1
Basepair signature:
|
19.43 | -431.49 | 4 | 3 |
|
| 26 |
Motif group HL_26631.1
Basepair signature:
|
19.43 | -870.42 | 3 | 3 |
|
| 27 |
Motif group HL_37344.1
Basepair signature:
|
19.08 | -140.83 | 4 | 3 |
|
| 28 |
Motif group HL_93535.1
Basepair signature:
|
19.08 | -167.95 | 3 | 3 |
|
| 29 |
Motif group HL_76094.1
Basepair signature:
|
19.08 | -1893.45 | 4 | 3 |
|
| 30 |
Motif group HL_97917.2
Basepair signature:
|
18.02 | -162.41 | 5 | 4 |
|
| 31 |
Motif group HL_87954.2
Basepair signature:
|
18.02 | -231.54 | 3 | 3 |
|
| 32 |
Motif group HL_31585.4
Basepair signature:
|
18.02 | -299.94 | 3 | 2 |
Purine riboswitch |
| 33 |
Motif group HL_57875.1
Basepair signature:
|
17.31 | -423.16 | 3 | 2 |
|
| 34 |
Motif group HL_37824.7
Basepair signature:
|
16.61 | -202.28 | 2 | 2 |
GNRA |
| 35 |
Motif group HL_62934.1
Basepair signature:
|
15.90 | -249.13 | 4 | 4 |
|
| 36 |
Motif group HL_35941.1
Basepair signature:
|
15.90 | -721.30 | 4 | 4 |
|
| 37 |
Motif group HL_10540.1
Basepair signature:
|
14.84 | -140.37 | 4 | 3 |
|
| 38 |
Motif group HL_32392.1
Basepair signature:
|
14.49 | -484.94 | 4 | 3 |
|
| 39 |
Motif group HL_82710.2
Basepair signature:
|
14.13 | -444.31 | 4 | 3 |
|
| 40 |
Motif group HL_46501.1
Basepair signature:
|
14.13 | -466.68 | 4 | 3 |
|
| 41 |
Motif group HL_30068.2
Basepair signature:
|
13.78 | -176.60 | 3 | 3 |
|
| 42 |
Motif group HL_59735.5
Basepair signature:
|
13.78 | -1319.67 | 4 | 3 |
|
| 43 |
Motif group HL_20535.2
Basepair signature:
|
13.43 | -143.67 | 4 | 3 |
|
| 44 |
Motif group HL_13963.3
Basepair signature:
|
12.72 | -135.37 | 4 | 3 |
|
| 45 |
Motif group HL_66103.1
Basepair signature:
|
12.72 | -428.88 | 4 | 3 |
|
| 46 |
Motif group HL_65794.5
Basepair signature:
|
12.72 | -2780.59 | 3 | 2 |
Pseudoknot geometry |
| 47 |
Motif group HL_28075.1
Basepair signature:
|
10.95 | -115.20 | 4 | 3 |
|
| 48 |
Motif group HL_99748.1
Basepair signature:
|
10.60 | -167.49 | 4 | 3 |
Other HL |
| 49 |
Motif group HL_78347.4
Basepair signature:
|
8.48 | -119.57 | 4 | 3 |
|
| 50 |
Motif group HL_49922.4
Basepair signature:
|
8.48 | -163.96 | 3 | 2 |
|
| 51 |
Motif group HL_80599.2
Basepair signature:
|
8.48 | -551.44 | 5 | 4 |
|
| 52 |
Motif group HL_86769.4
Basepair signature:
|
7.77 | -111.87 | 5 | 4 |
|
| 53 |
Motif group HL_50318.1
Basepair signature:
|
7.42 | -469.17 | 5 | 4 |
|
| 54 |
Motif group HL_29966.1
Basepair signature:
|
6.01 | -655.69 | 5 | 3 |
|
| 55 |
Motif group HL_61996.2
Basepair signature:
|
5.30 | -127.77 | 5 | 4 |
|
| 56 |
Motif group HL_02817.2
Basepair signature:
|
5.30 | -341.41 | 5 | 4 |
|
| 57 |
Motif group HL_50860.2
Basepair signature:
|
4.59 | -113.22 | 5 | 4 |
|
| 58 |
Motif group HL_98864.1
Basepair signature:
|
4.24 | -103.77 | 6 | 5 |
T-loop with unstacked turn |
| 59 |
Motif group HL_56676.1
Basepair signature:
|
4.24 | -298.46 | 4 | 3 |
|
| 60 |
Motif group HL_93383.1
Basepair signature:
|
4.24 | -594.90 | 6 | 4 |
|
| 61 |
Motif group HL_78677.1
Basepair signature:
|
4.24 | -704.71 | 4 | 3 |
|
| 62 |
Motif group HL_52953.3
Basepair signature:
|
4.24 | -2854.82 | 3 | 2 |
|
| 63 |
Motif group HL_13529.1
Basepair signature:
|
3.89 | -148.92 | 5 | 4 |
|
| 64 |
Motif group HL_04259.3
Basepair signature:
|
3.89 | -185.28 | 4 | 3 |
GNRA with extra cWW |
| 65 |
Motif group HL_57176.2
Basepair signature:
|
3.89 | -591.69 | 3 | 2 |
Pseudoknot geometry with 3' bulge |
| 66 |
Motif group HL_75293.5
Basepair signature:
|
3.53 | -147.32 | 5 | 4 |
|
| 67 |
Motif group HL_18565.1
Basepair signature:
|
3.18 | -127.97 | 5 | 4 |
|
| 68 |
Motif group HL_77436.5
Basepair signature:
|
3.18 | -136.39 | 3 | 3 |
T-loop related |
| 69 |
Motif group HL_47787.2
Basepair signature:
|
3.18 | -294.45 | 3 | 3 |
|
| 70 |
Motif group HL_25061.1
Basepair signature:
|
2.83 | -242.50 | 5 | 4 |
|
| 71 |
Motif group HL_22584.6
Basepair signature:
|
2.83 | -260.54 | 4 | 3 |
Fab BL3-6 binding hairpin with tSW |
| 72 |
Motif group HL_15574.1
Basepair signature:
|
2.83 | -424.90 | 5 | 4 |
|
| 73 |
Motif group HL_20743.5
Basepair signature:
|
2.47 | -114.47 | 5 | 4 |
|
| 74 |
Motif group HL_87553.1
Basepair signature:
|
2.47 | -120.70 | 4 | 3 |
|
| 75 |
Motif group HL_28252.8
Basepair signature:
|
2.47 | -173.79 | 4 | 4 |
T-loop with 2 stacked bulged bases |
| 76 |
Motif group HL_08100.1
Basepair signature:
|
2.47 | -242.10 | 4 | 3 |
|
| 77 |
Motif group HL_21372.1
Basepair signature:
|
2.47 | -244.72 | 5 | 4 |
|
| 78 |
Motif group HL_33983.1
Basepair signature:
|
2.47 | -259.24 | 5 | 4 |
|
| 79 |
Motif group HL_27670.2
Basepair signature:
|
2.47 | -345.37 | 5 | 3 |
T-loop with unstacked turn |
| 80 |
Motif group HL_97733.1
Basepair signature:
|
2.47 | -1571.92 | 6 | 5 |
|
| 81 |
Motif group HL_84299.4
Basepair signature:
|
2.12 | -157.79 | 5 | 3 |
|
| 82 |
Motif group HL_89893.1
Basepair signature:
|
2.12 | -363.67 | 5 | 4 |
|
| 83 |
Motif group HL_55195.3
Basepair signature:
|
2.12 | -522.50 | 3 | 3 |
|
| 84 |
Motif group HL_38808.1
Basepair signature:
|
2.12 | -1985.69 | 5 | 4 |
|
| 85 |
Motif group HL_94980.1
Basepair signature:
|
1.77 | -1651.09 | 4 | 4 |
|
| 86 |
Motif group HL_78197.1
Basepair signature:
|
1.77 | -2597.95 | 4 | 3 |
|
| 87 |
Motif group HL_22622.1
Basepair signature:
|
1.77 | -2850.69 | 5 | 4 |
|
| 88 |
Motif group HL_26934.1
Basepair signature:
|
1.41 | -117.72 | 5 | 4 |
|
| 89 |
Motif group HL_93438.2
Basepair signature:
|
1.41 | -131.81 | 5 | 5 |
|
| 90 |
Motif group HL_42046.2
Basepair signature:
|
1.41 | -155.82 | 4 | 3 |
|
| 91 |
Motif group HL_67079.1
Basepair signature:
|
1.41 | -160.60 | 7 | 6 |
|
| 92 |
Motif group HL_20811.4
Basepair signature:
|
1.41 | -162.29 | 4 | 3 |
tRNA D-loop |
| 93 |
Motif group HL_77082.1
Basepair signature:
|
1.41 | -185.03 | 4 | 4 |
Pseudoknot geometry |
| 94 |
Motif group HL_15802.1
Basepair signature:
|
1.41 | -210.04 | 6 | 5 |
|
| 95 |
Motif group HL_89199.2
Basepair signature:
|
1.41 | -598.53 | 4 | 3 |
Mini UNCG |
| 96 |
Motif group HL_39243.1
Basepair signature:
|
1.41 | -2810.36 | 5 | 4 |
|
| 97 |
Motif group HL_64690.6
Basepair signature:
|
1.06 | -165.41 | 5 | 4 |
|
| 98 |
Motif group HL_25967.2
Basepair signature:
|
1.06 | -269.50 | 5 | 4 |
|
| 99 |
Motif group HL_10453.3
Basepair signature:
|
1.06 | -276.97 | 5 | 3 |
tRNA anticodon loop |
| 100 |
Motif group HL_71391.1
Basepair signature:
|
1.06 | -288.47 | 5 | 3 |
|
| 101 |
Motif group HL_37369.2
Basepair signature:
|
1.06 | -335.11 | 4 | 3 |
|
| 102 |
Motif group HL_65313.1
Basepair signature:
|
1.06 | -657.50 | 4 | 3 |
|
| 103 |
Motif group HL_85993.1
Basepair signature:
|
1.06 | -1025.49 | 6 | 4 |
|
| 104 |
Motif group HL_30680.3
Basepair signature:
|
1.06 | -1096.69 | 4 | 3 |
Pseudoknot geometry |
| 105 |
Motif group HL_28791.1
Basepair signature:
|
1.06 | -2883.00 | 4 | 3 |
|
| 106 |
Motif group HL_20167.2
Basepair signature:
|
0.71 | -112.65 | 4 | 4 |
|
| 107 |
Motif group HL_01609.3
Basepair signature:
|
0.71 | -177.73 | 4 | 3 |
T-loop with 2 bulged bases not stacked |
| 108 |
Motif group HL_89567.2
Basepair signature:
|
0.71 | -183.38 | 5 | 4 |
|
| 109 |
Motif group HL_87463.1
Basepair signature:
|
0.71 | -216.70 | 6 | 5 |
|
| 110 |
Motif group HL_06226.4
Basepair signature:
|
0.71 | -223.92 | 6 | 5 |
|
| 111 |
Motif group HL_34617.5
Basepair signature:
|
0.71 | -283.81 | 3 | 2 |
UNCG |
| 112 |
Motif group HL_43517.1
Basepair signature:
|
0.71 | -478.48 | 4 | 4 |
|
| 113 |
Motif group HL_80008.1
Basepair signature:
|
0.71 | -1809.66 | 5 | 5 |
|
| 114 |
Motif group HL_09452.1
Basepair signature:
|
0.71 | -2969.74 | 5 | 4 |
|
| 115 |
Motif group HL_02887.3
Basepair signature:
|
0.35 | -122.71 | 6 | 5 |
T-loop with 3 stacked bulged bases |
| 116 |
Motif group HL_81545.2
Basepair signature:
|
0.35 | -139.65 | 6 | 5 |
|
| 117 |
Motif group HL_41464.2
Basepair signature:
|
0.35 | -146.59 | 5 | 4 |
|
| 118 |
Motif group HL_73266.9
Basepair signature:
|
0.35 | -151.93 | 5 | 4 |
|
| 119 |
Motif group HL_45175.1
Basepair signature:
|
0.35 | -174.94 | 5 | 4 |
tRNA D-loop |
| 120 |
Motif group HL_25847.2
Basepair signature:
|
0.35 | -192.89 | 6 | 6 |
|
| 121 |
Motif group HL_00914.1
Basepair signature:
|
0.35 | -373.62 | 6 | 5 |
|
| 122 |
Motif group HL_29129.3
Basepair signature:
|
0.35 | -1481.70 | 6 | 5 |
|
| 123 |
Motif group HL_91503.7
Basepair signature:
|
0.35 | -1850.29 | 6 | 5 |
|
| 124 |
Motif group HL_83632.1
Basepair signature:
|
0.35 | -1880.79 | 4 | 3 |
tRNA anticodon loop |
| 125 |
Motif group HL_67667.2
Basepair signature:
|
0.35 | -2660.78 | 4 | 3 |
|
| 126 |
Motif group HL_93324.4
Basepair signature:
|
0.35 | -2719.16 | 4 | 3 |
Pseudoknot geometry |
| 127 |
Motif group HL_08510.1
Basepair signature:
|
0.35 | -4733.10 | 6 | 5 |
|
| 128 |
Motif group HL_99867.1
Basepair signature:
|
0.35 | -6315.57 | 5 | 4 |
|
| 129 |
Motif group HL_97983.1
Basepair signature:
|
0.35 | -7466.88 | 7 | 5 |
|
| 130 |
Motif group HL_07951.3
Basepair signature:
|
0.35 | -9999.00 | 5 | 5 |
tRNA D-loop |
| 131 |
Motif group HL_86012.1
Basepair signature:
|
0.00 | -103.96 | 6 | 5 |
T-loop with unstacked turn |
| 132 |
Motif group HL_57863.1
Basepair signature:
|
0.00 | -116.32 | 6 | 5 |
G-quadruplex fragment |
| 133 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -126.99 | 6 | 5 |
tRNA D-loop |
| 134 |
Motif group HL_66853.7
Basepair signature:
|
0.00 | -131.33 | 5 | 4 |
|
| 135 |
Motif group HL_83808.4
Basepair signature:
|
0.00 | -141.47 | 6 | 5 |
Pseudoknot |
| 136 |
Motif group HL_68257.1
Basepair signature:
|
0.00 | -145.13 | 7 | 7 |
|
| 137 |
Motif group HL_41543.1
Basepair signature:
|
0.00 | -151.85 | 8 | 6 |
|
| 138 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -159.10 | 6 | 6 |
tRNA D-loop |
| 139 |
Motif group HL_18423.1
Basepair signature:
|
0.00 | -165.00 | 6 | 6 |
|
| 140 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -165.40 | 8 | 7 |
|
| 141 |
Motif group HL_04171.7
Basepair signature:
|
0.00 | -165.82 | 7 | 5 |
|
| 142 |
Motif group HL_36335.1
Basepair signature:
|
0.00 | -166.07 | 6 | 6 |
|
| 143 |
Motif group HL_16991.1
Basepair signature:
|
0.00 | -168.19 | 8 | 7 |
G-quadruplex fragment |
| 144 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -171.05 | 8 | 7 |
|
| 145 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -174.65 | 8 | 6 |
|
| 146 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -175.16 | 8 | 7 |
|
| 147 |
Motif group HL_01962.2
Basepair signature:
|
0.00 | -183.43 | 7 | 5 |
|
| 148 |
Motif group HL_86109.1
Basepair signature:
|
0.00 | -186.05 | 8 | 7 |
|
| 149 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -186.14 | 9 | 8 |
|
| 150 |
Motif group HL_70658.1
Basepair signature:
|
0.00 | -189.91 | 8 | 7 |
|
| 151 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -191.50 | 9 | 8 |
|
| 152 |
Motif group HL_60266.1
Basepair signature:
|
0.00 | -192.16 | 8 | 7 |
|
| 153 |
Motif group HL_81538.2
Basepair signature:
|
0.00 | -201.83 | 4 | 3 |
GNRA with tandem sheared |
| 154 |
Motif group HL_40252.4
Basepair signature:
|
0.00 | -205.22 | 7 | 6 |
|
| 155 |
Motif group HL_18978.1
Basepair signature:
|
0.00 | -208.64 | 6 | 5 |
|
| 156 |
Motif group HL_53504.3
Basepair signature:
|
0.00 | -211.12 | 7 | 6 |
|
| 157 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -212.79 | 9 | 8 |
|
| 158 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -219.08 | 10 | 9 |
|
| 159 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -225.52 | 7 | 6 |
|
| 160 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -225.72 | 6 | 5 |
|
| 161 |
Motif group HL_47854.1
Basepair signature:
|
0.00 | -233.40 | 6 | 5 |
|
| 162 |
Motif group HL_02483.1
Basepair signature:
|
0.00 | -236.94 | 8 | 7 |
|
| 163 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -240.09 | 7 | 6 |
|
| 164 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -240.31 | 10 | 10 |
|
| 165 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -240.59 | 8 | 7 |
|
| 166 |
Motif group HL_68767.1
Basepair signature:
|
0.00 | -243.83 | 8 | 7 |
tRNA D-loop |
| 167 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -244.88 | 8 | 8 |
|
| 168 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -246.85 | 9 | 9 |
|
| 169 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -249.77 | 7 | 6 |
|
| 170 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -252.30 | 7 | 7 |
|
| 171 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -254.81 | 9 | 9 |
Pseudoknot geometry |
| 172 |
Motif group HL_53454.2
Basepair signature:
|
0.00 | -263.88 | 5 | 5 |
|
| 173 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -270.32 | 10 | 9 |
|
| 174 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -275.53 | 11 | 11 |
|
| 175 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -275.55 | 8 | 7 |
|
| 176 |
Motif group HL_73255.1
Basepair signature:
|
0.00 | -280.05 | 6 | 5 |
|
| 177 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -306.38 | 13 | 13 |
|
| 178 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -309.29 | 4 | 4 |
tRNA anticodon loop |
| 179 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -318.89 | 8 | 6 |
|
| 180 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -329.53 | 10 | 9 |
tRNA D-loop |
| 181 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -357.91 | 15 | 14 |
|
| 182 |
Motif group HL_34964.1
Basepair signature:
|
0.00 | -373.74 | 7 | 6 |
|
| 183 |
Motif group HL_88205.2
Basepair signature:
|
0.00 | -404.98 | 6 | 5 |
|
| 184 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -420.18 | 10 | 10 |
|
| 185 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -450.64 | 11 | 10 |
|
| 186 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -664.08 | 5 | 5 |
|
| 187 |
Motif group HL_86883.1
Basepair signature:
|
0.00 | -688.32 | 4 | 3 |
|
| 188 |
Motif group HL_22135.1
Basepair signature:
|
0.00 | -745.02 | 5 | 4 |
|
| 189 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -1320.07 | 6 | 6 |
tRNA D-loop |
| 190 |
Motif group HL_85434.1
Basepair signature:
|
0.00 | -1338.10 | 7 | 6 |
|
| 191 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -1407.12 | 7 | 5 |
|
| 192 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -1487.53 | 13 | 12 |
|
| 193 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -1488.30 | 12 | 11 |
|
| 194 |
Motif group HL_11542.1
Basepair signature:
|
0.00 | -1522.52 | 9 | 8 |
|
| 195 |
Motif group HL_12870.1
Basepair signature:
|
0.00 | -1676.05 | 9 | 8 |
|
| 196 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -1700.14 | 9 | 8 |
|
| 197 |
Motif group HL_85367.2
Basepair signature:
|
0.00 | -1776.45 | 4 | 3 |
|
| 198 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -1783.52 | 7 | 6 |
tRNA D-loop |
| 199 |
Motif group HL_38046.1
Basepair signature:
|
0.00 | -1807.58 | 7 | 5 |
|
| 200 |
Motif group HL_72628.1
Basepair signature:
|
0.00 | -1821.33 | 6 | 5 |
|
| 201 |
Motif group HL_29762.1
Basepair signature:
|
0.00 | -1868.20 | 7 | 6 |
|
| 202 |
Motif group HL_80411.1
Basepair signature:
|
0.00 | -1871.60 | 7 | 6 |
tRNA D-loop |
| 203 |
Motif group HL_88558.1
Basepair signature:
|
0.00 | -1872.07 | 8 | 8 |
|
| 204 |
Motif group HL_50779.4
Basepair signature:
|
0.00 | -1900.08 | 6 | 5 |
|
| 205 |
Motif group HL_93135.1
Basepair signature:
|
0.00 | -1972.64 | 7 | 6 |
Pseudoknot |
| 206 |
Motif group HL_69139.1
Basepair signature:
|
0.00 | -2129.95 | 6 | 6 |
|
| 207 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -2176.36 | 5 | 5 |
|
| 208 |
Motif group HL_99040.1
Basepair signature:
|
0.00 | -2410.05 | 4 | 3 |
|
| 209 |
Motif group HL_80362.1
Basepair signature:
|
0.00 | -2500.47 | 6 | 5 |
|
| 210 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -2863.22 | 6 | 4 |
|
| 211 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -3414.87 | 8 | 7 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 212 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -3450.19 | 13 | 12 |
|
| 213 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -3853.15 | 8 | 7 |
G-quadruplex fragment |
| 214 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -3937.42 | 16 | 15 |
|
| 215 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -3958.40 | 12 | 11 |
|
| 216 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -3960.26 | 16 | 15 |
|
| 217 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -3977.35 | 14 | 14 |
|
| 218 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -3999.77 | 17 | 16 |
G-quadruplex |
| 219 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -4001.12 | 18 | 17 |
G-quadruplex |
| 220 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -4036.90 | 19 | 19 |
G-quadruplex |
| 221 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -4049.08 | 19 | 18 |
|
| 222 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -4143.42 | 8 | 7 |
|
| 223 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -4303.57 | 10 | 10 |
|
| 224 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -4313.44 | 8 | 7 |
|
| 225 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -4324.51 | 10 | 9 |
Pseudoknot geometry with G-bulge |
| 226 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -4350.20 | 9 | 8 |
|
| 227 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -4362.98 | 6 | 6 |
|
| 228 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -4506.79 | 33 | 33 |
|
| 229 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -4572.89 | 8 | 8 |
|
| 230 |
Motif group HL_19210.3
Basepair signature:
|
0.00 | -4584.21 | 6 | 5 |
|
| 231 |
Motif group HL_15118.1
Basepair signature:
|
0.00 | -4630.63 | 8 | 7 |
|
| 232 |
Motif group HL_94376.1
Basepair signature:
|
0.00 | -4693.47 | 7 | 6 |
Pseudoknot geometry |
| 233 |
Motif group HL_38649.1
Basepair signature:
|
0.00 | -4696.12 | 7 | 6 |
|
| 234 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -4705.33 | 7 | 7 |
|
| 235 |
Motif group HL_01255.1
Basepair signature:
|
0.00 | -4829.40 | 7 | 7 |
|
| 236 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -4859.72 | 11 | 10 |
|
| 237 |
Motif group HL_55436.1
Basepair signature:
|
0.00 | -4879.24 | 6 | 5 |
|
| 238 |
Motif group HL_70751.1
Basepair signature:
|
0.00 | -4953.15 | 7 | 6 |
|
| 239 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -5007.30 | 9 | 8 |
|
| 240 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -5071.01 | 7 | 6 |
|
| 241 |
Motif group HL_36684.4
Basepair signature:
|
0.00 | -5077.87 | 6 | 5 |
|
| 242 |
Motif group HL_50418.1
Basepair signature:
|
0.00 | -5191.45 | 6 | 6 |
|
| 243 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -5214.19 | 9 | 8 |
|
| 244 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -5263.86 | 11 | 10 |
|
| 245 |
Motif group HL_29958.1
Basepair signature:
|
0.00 | -5397.19 | 9 | 8 |
|
| 246 |
Motif group HL_78284.1
Basepair signature:
|
0.00 | -5420.61 | 7 | 6 |
|
| 247 |
Motif group HL_74292.1
Basepair signature:
|
0.00 | -5686.51 | 6 | 5 |
|
| 248 |
Motif group HL_68572.1
Basepair signature:
|
0.00 | -5733.77 | 8 | 8 |
|
| 249 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -6233.18 | 4 | 4 |
|
| 250 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -6243.18 | 7 | 7 |
|
| 251 |
Motif group HL_42998.2
Basepair signature:
|
0.00 | -6415.92 | 5 | 4 |
|
| 252 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -7220.00 | 12 | 11 |
|
| 253 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -9999.00 | 7 | 6 |
tRNA D-loop |