JAR3D
Query RF03087-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Rfam family RF03087 maps to these 30 chains: 9ISV|1|A, 9J3R|1|A, 9J3R|1|B, 9J3R|1|C, 9J3R|1|D, 9J3T|1|A, 9J3T|1|B, 9J3T|1|C, 9J3T|1|D, 9J3T|1|E, 9J3T|1|F, 9J3T|1|G, 9J3T|1|H, 9MM6|1|A, 9MM6|1|E, 9MM6|1|I, 9MM6|1|M, 9MM6|1|Q, 9MM6|1|U, 9MM6|1|Y, 9MM6|1|c, 9MME|1|U, 9MME|1|Y, 9MME|1|c, 9MME|1|g, 9MME|1|k, 9MME|1|o, 9MME|1|s, 9MME|1|w, 9MMG|1|c See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.
Loop 29 Hairpin loop
Column numbers: 848-969 - View nucleotides in PDB file(s)
Scored sequences and counts
AAU--CCACCAGAUUAAAUUAUGAAUA---------------------------------------------------------------CCAAAUUCUGAAUG-----------------C 12
AAAU-GUGCAGAUAAAACAUUUGGAUAUGUUUAUGCUUAAAA------------------------------------------------UAUAUUUCUGAAUG-----------------U 6
AAUC-UUGGUUUACAAGAAUAUUCUUAAUUAUUUACUAGAAGA-----------------------------------------------AAAUAAUCUGAAUG-----------------A 5
GA---GACAGGUUCUGAGUCAGGAAAAAUAAGAUCACAGA--------------------------------------------------ACAAAUGCUGAAGAG----------------U 5
GA---GUGCGUAGAGGAACGAUUUCUACAGAUAACGAAGCUAACAGGAAAUU--------------------------------------AUUAGAUCUGAAAG-----------------A 4
GA---GACAGGUUCUGAGUCAGAAAAAGGAAGAUCACAGA--------------------------------------------------ACAAAUGCUGAAGAG----------------U 4
GA---GACAGUUCUAUAAUGACAAGAAGAUCGUCAGG-----------------------------------------------------AAAACUGCUGAAGAG----------------U 4
A-----GGCGAUUUUACAAAUCAAGAAUAAUUGGUAAU----------------------------------------------------UCUAAUGCUGAAUG-----------------A 4
AU---GACGGGUUUGAAGAUGAUCUUUUCUAUAUCAAAUAUGGAUUUUGUAAAAG-----------------------------------AAAAUUUCUGAAAG-----------------A 3
A----UACCAAAAGUUAUACUGGUCUUGAAAACCAGAGAUAGAAAA--------------------------------------------CAUUUUUCUGAAAG-----------------A 3
AAU--GUGCAGAUGAACGAUACUGAUAUUGUUAUGCUAAAAC------------------------------------------------AAAUAUUCUGAAUG-----------------U 3
AUC--GGCAAGAUUAAAUGAUACUAUUAGGUACAAUAUAUA--------------------------------------------------GAACGCACA---------------------U 3
AU---GGCAGUUUUAAAAAGCAAUCUUUCGAUACGAGCAUAUGAGAAUAAGGAAAUGCAAAUAGGCGAAA--------------------GCAUAAUCUGAAAG-----------------A 2
AG---GACAGUUUUGGUGUUUGAUCUUUAAUACGAUAUGAUGAAAAAGAAAUUGUAUGAAACUAUC------------------------AAAUUUUCUGAACG-----------------A 2
AGC--GUGUUCAGUUCUAAACUAGACUGGAAAGAUCCGCACAAGUAGAAUGCGAAAAACUCUA---------------------------UUUUUGACUGAAUG-----------------G 2
A----GGUAGUCAUAAUAGAAUGUAUAUUUUAAUUAAAACUACAUAUGAAAUUACAGUAUAUU---------------------------AAUGAUUCUGAAUG-----------------A 2
AG---CUACAGCAUAUUGACUAAUUAAUGGCUCGUGAAAGAGCGAAAUGAAAAGA-----------------------------------AAAUUUGCUGAAUG-----------------A 2
A----GGCUAGUCCAGACAAGAAAAAUUUGACGAACCUUAGAAUAGGUAAUUAAC-----------------------------------UUUUAUACGGAAC------------------G 2
AU---GGCAAGUUGAUGAAAAUAAAGCGAAUAGGUGUAAGAUGCAACUA-----------------------------------------UGAUAUUCUGAAAG-----------------A 2
AUC--UACGUUUGAAGAUAAUUCUUUCCGAAUGGCAUUUAUUCAAAAA------------------------------------------GAAAAAUCCGAAA------------------G 2
AAUC-UUGGUUUACAAGAAUAUUCUUAAUUAUUUGAUAGAAGA-----------------------------------------------AAAUAAUCUGAAUG-----------------A 2
AA---GUGUGCAGAGGAUUUACAAGAUAUAUUGUGCUAAAA-------------------------------------------------UAUUAAUCUGAAUG-----------------U 2
AAUU-GUGCAGAGAAUUUACAAGAUAUAUUGUGCUAAAA---------------------------------------------------UAUUAAUCUGAAUG-----------------U 2
GA---GACAGGUUCUGAGUCAGAAAAAGGAAGAUCACAGA--------------------------------------------------ACAAGUGCUGAAGAG----------------U 2
GA---GACAGGUUCUGAGUCAGGAGAAAUAAGAUCACAGA--------------------------------------------------ACAAAUGCUGAAGAG----------------U 2
GA---GACAGGUUCUGAGUCAGGAGAAAUAAGAUCACAGA--------------------------------------------------ACAAGUGCUGAAGAG----------------U 2
A----UACCAGAGUGUUGCUAGUUCUCGAAACUAGCUGGCU-------------------------------------------------CAAUUAUCUGAAAG-----------------A 2
AAA--CGUGGAAAUUACAAUACAGGUUUUUGCAUAA-----------------------------------------------------CCAUCAAUCGCAUUG-----------------U 2
AU---GGCAAAACAAAAUUUUUUUUGCAAAUCAAA-------------------------------------------------------AAAAAUUCCGAAAG-----------------A 2
AAUC-GACAAUCUUACAUUAACUGG----------------------------------------------------------------AACAUUGCACAUG-------------------U 2
AU---GGCAGUUACUACUCUACA-------------------------------------------------------------------ACCAUUUCUGAAUG-----------------G 2
AU---GGCAAUAAAUGAACUUU--------------------------------------------------------------------UACCUAAUUGAAUG-----------------G 2
AU---GGCAAUUCUACAA------------------------------------------------------------------------UCAAAUUCUGAAUG-----------------G 2
AU---GGCAAUUUU-----------------------------------------------------------------------------UACAAUCUGAAUG-----------------G 2
AU---GGCAGUUUCUUAAUAAAAUAAAGCUCAAAAAUUAUUCAUUAAGAAUAAAAAGAUAAUUCUAAUUUAAUUUUUGAUUUAAAACAUAUUUUUUUCUGAAUG-----------------A 1
AA---AGGCGAAAACUUUAAGGUAUUACAAAUAAUUGCUGUAACAAAGGUGAUUACUUCUGUAACGAACUUAAAGCAAGUAUAAU-----AAAUAUCCUGAAUGGU---------------A 1
AU---GGCACUAUGGUUUAAAAGCGGUGGUGCUGGGUCUUUUUCUAAUUUGAUACUUAAUUAAUUAUAUUUGGGCAAUUAAAAU------AUUAAAUCUGAAUGU----------------U 1
AUAC-GGCAGACAACAGAUUUAAAACAAAUAUUUAAAAACAAGUCUACUAAUAGGGGUUGUUUGUUUAAAAACAAGUUUUAA--------UUUAAUUCUGAAUG-----------------A 1
AA---UAAAGUCUACGCUUUAUUAACAAGUGCAAUUAUUUUGUUUAAGGUGAA-------ACAAACAAAUUACAGUUCCUAAAAAAG--GGAAAAUGUCUAUU------------------G 1
AACU-UACGCUAUGAUUAACAAAUUAACUUUUGUUCUAGUGCGAUAGAAAAAAGAGCAAUUACUGCAUACG------------AGAGUAUGAAAAUGUCUAUU------------------G 1
AAU--CAACGAUAAUUUUGAUGAAAUAAAGAAAAAUGGUUUUAAAAGGUAUUUUAAAAUAGAAAUAU---------------AAAAAUUAUUUAAUUCUGAAUA-----------------A 1
AAC--AAGGCAAAAAAGGGAAAAUCAGUACAUAUGUAAUUUUGGAAGUAUUAAAAGAAAACAAUACAAAGAA------------------AAAUUAUCUGAAUG-----------------A 1
A-----GGCGAAAGUUUAAUAAUUUGCUUAAAAAAGUAUCACAUUUAUAAAUUGACAAAUAACAAUCUAUAAAU----------------UUUACUUCUGAAAG-----------------A 1
A-----GGCGAAAGUUUGAUAAUUUGCUUAAAAAAGUAUCACAUUUAUAAAUUGACAAAUAACAAUCUAUAAAU----------------UUUACUUCUGAAAG-----------------A 1
A-----GGCGAAAGUUUGAUAAUUUGUUUAAAAAAGUAUCACAUUUAUAAAUUGACAAAUAA----------CAAUCUAUAAAU------UUUACUUCUGAAAG-----------------A 1
AAU--UUACGCUUCUAUUAACAAUUAUGAUUGCGUUUAGUGCGAAAAAAG------------------CAAUUUACUGUACACAAAAGGUGUAAAUGUCUAUC------------------G 1
AAU--CGACAUAAAUUUGAUUGGAUAAAAACAAUUCUUAUUAUGAUUAAAGAAUGAUUCUAAUAGGA-----------------------UAUUAAACUGAAUGACU--------------U 1
AU---GGCAAGUUCUUCAAUAAGCAGUUUUUCGAUGUUAGCAUAUGGAAUAAGGAAUGCAAGUAGAAAAAA-------------------ACAUGAUCUGAAAG-----------------A 1
AU---GGCAAGUUCUUCAAUAAGCAGUUUUUCGAUGUUAGCAUAUGGAAUAAGGAAUGCAAGUAGAAAAA--------------------ACAUGAUCUGAAAG-----------------A 1
AAU--GACAAGGCUGUAAUUCAAGUAAAUGUAAUUUCAAAUAUUGAUUUUAAUAGAAGAUUAAAAUUU----------------------UUACUUUGUGAAUU-----------------G 1
AUU-CUGCAAUCCCUUGGUUGGGAAGUGUUGUCCAUAUAGUUCAAGAUGGAGACAUGAAUACAAGAUUA-----------------------UAUUACUCUUG------------------U 1
A----GAGGAAUCAAAUGAGUAAAACAAGUAUUAUAGGUAAAUAUUAUGUU---------------------------------------UUUCUAUCUGAAUGAUUGUGCCUUGAAAAAGG 1
A----GGCAGUAGAAGAAUAAUUUUUUAAUUUAGAUAGUAAAUUCAGGUAAGUUUACAUAUCAAAUU-----------------------ACAACUUCUGAAUG-----------------G 1
AU---GACACAGCUCAAAUAUGAUACGUUGUGCAUGAGUUAUGAGUAAUAGUAACUGAUGAACCUUA-----------------------AAAAAUUCUGAAG------------------U 1
AU---GGCAAGUUCUUAAAUAAGCAAUUUCGAUAUGAGCAAUGCAAAAGGUGCAAAAUAGGCGAAA------------------------ACAUAAUCUGAAAG-----------------A 1
AU---GGCAAGUUCUUAAAUAAGCAAUUUCGAUAUGAGCAAUGCAAAGGGUGCAAAAUAGGCGAAA------------------------ACAUUAUCUGAAAG-----------------A 1
AU---GGCAAGUUCUUGAAUAAGCAAUUUCGAUAUAAGCAAUGAAAAGGGUGCAAAAUAGGCGAAA------------------------ACAUAAUCUGAAAG-----------------A 1
AUU-CUGCAACCCUCUUUAGGGUAUGUGUUAGCCAUAUUUUAGGAUGGAAACAUGAAUACAAGAUAU-------------------------AUUUACUCUUG------------------U 1
A----GGCAGUAGAAGAACAAGGUAUAUAAAGAGAACAUCAAAUUAUACAAGUAAGUUUGAGGUUG------------------------AUUAAUUCUGAAUG-----------------A 1
AAG--UGACGUGAGAUUAAUACAUAAAGAACAAAAAAAUUAAAUCUUAUUAUGAAUUUUCU-----------------------------UAAUACGCUGAAUGAC---------------A 1
AUAC-UGCAGCCCCUUGGGGUUUGUUGUCCAUAUAGUUUAAGAUGGAAACAUUGAAUCAAG---ACAU------------------------AUUUACUCUUG------------------U 1
AAG--UGACAACAAGUUCUUGGUAUUAGAACAAAUAGAAAAUAUUUGAUUUAUUAUUGAA------------------------------GAAUUUGCUGAAUGGU---------------U 1
AU---GACAGUAUUGGAACUUUUCUUUAUAAGUAAUAGCAAAUAUUAUGAAUUAAUGAAGAUU---------------------------UUAGAUGCUGAAUG-----------------A 1
AUA-CUGCAGCCCUUUUUGGGGUUUGUUGUCCAUAUAGUUUAAGAUGGAAACAUAUUACAAGAU----------------------------AUUUACUCUUG------------------U 1
AGC--GUGUUCAGUUUAUUUUUGACGCAGAUCAAAACAAGAUCAAUACACUAAGACUGAUU-----------------------------GGAAAAACUGAAUG-----------------G 1
AUA-CUGCAGCCCUUUUGGGGUUUGUUGUCCAUAUAGUUUAAGAUGGAAACAUAUUACAAGAU-----------------------------AUUUACUCUUG------------------U 1
AUUU-UGUACGAUGACAAAAAUACAGCGAGUUUAUAAUUAGGUAAUUAUAAAUAUAUGAAA-----------------------------CAUAUUGUGGAAC------------------U 1
A----GUCGAGAAUGAUACAAAUUAUCAAAAUAGAAAAAAUAUACAGGUUUUUGAUAAAACU----------------------------UAACAUUCUGAAUG-----------------G 1
A--GCGUGUUCAGUUCAAACUAGAAUGGAAAGAUCCGCACAAGUAGAAUGCGAAAAACUA------------------------------UUUUUGACUGAAUG-----------------G 1
AAG--UGACGUGAGAUUAAUACAUAAAGAACAAAAAAUUAAUUCUUAUUAUGAAUUUU--------------------------------UAAUACGCUGAAUGAC---------------A 1
AGC--GUGUUCAGUUCAAACUAGAAUGGAAAGAUCCGCACAAGUAGAAUGCGAAAAACUA------------------------------UUUUUGACUGAAUG-----------------G 1
AGU--CUACGCUUAUGUGAAAAACAAAUAAUUUUUUAAUGUUGGAGUACAUUAAACUUUA------------------------------AAUUAAGCUGAAUG-----------------G 1
AU---GGCAAGUUCUUAAUUUUCAAAAAAUGUUUUAAGAGGAUAAGAAAAAACAUUAUGCA-----------------------------AAACAUUCUGAAAG-----------------A 1
A----GACAAGACUCAGGAAUUAGAAUAUAAGUUACCAAGUUGAUAAAGGGUAUUUAAAAA-----------------------------UUCUAUGCCGUAAG-----------------G 1
A----GGUAGUCAUAAUAGAAUGUAUAUUUUAAUUAAGUACAUAUGAAAUUACAGUAUAUU-----------------------------AACGAUUCUGAAUG-----------------A 1
A----GACAAUUAAUUAUUCUAAUCAAAUUAUAGCUAUGGUCUAUAAGUACAAGAAUAUU------------------------------GGUCAUACUGAAUG-----------------A 1
AAG--CGCGAAGAAUUUCUAAUGUUUGAUUAAGAAUGGUAUUUUGAACCAUUAUUGCU--------------------------------GAAAACUCUGAAUG-----------------G 1
AGA--GUGUUCAGUUCAAACUAGACUGGAAAGAUUCGCAAGAAAUGCGAAUAAUACUA--------------------------------UUUUUGACUGAAUG-----------------G 1
AGC--GUGCGUACUUCAAACAUUUGAUAAGUGGUCCAUGUGAGAACAACAGGGAAACU--------------------------------UUCUUAGCUGAAUG-----------------G 1
AU---GGCAAGUUUUUGAUAAGCUAUUGCAGUGGACGUGAAAUCCAUUGAUGCAAAACA-------------------------------UAUUCUUCUGAAAG-----------------A 1
A----UGCUAAGACGAACAUGCAAAAAAUAAUAAUUCAAGAGGUGAAUUAAUUUUAUUU-------------------------------UGAUAUUCUGAAUG-----------------G 1
AAU--CUGCAAGAUUACAUGGAUAAUUAGGAUUAACAAGAAAAAAGGGUUUUUUAAAUU-------------------------------AAUGCUUCUAAC-------------------G 1
A----GUCAGUGUAGGUAUAAAAAAGAAUGUAUGCUAAUAGAGUAUAUGAUAACAAAA--------------------------------CUUAAUUCUGAAUG-----------------G 1
AA---GACGAAUAUUACUAAUAUCUUUAAUAUUAUUUAUUGGACAUAAUGAAAGAAG---------------------------------AAAUUUUCUGAAUG-----------------U 1
AAU--CGACAUUAAAAUAAAACACAUAUAAUAGAAGAAAUUUAUAAAACAAAAA------------------------------------AUCUUUUCUGAAUGAC---------------A 1
AGA--GUGUUCAGUUCAAACUAGACUGGAAAGAUCCGCAAGCAAUGCGAAUAACUA----------------------------------UUUUUGACUGAAUG-----------------G 1
AU---CGCAUUGACUUGAUAUGAUGAAGAGAUGGGCUGAAUAGUGUCAAUUUGGUCA---------------------------------AAACUUUCUGAAUA-----------------U 1
AG---CUACAGCAUAUUGACUAAUUUAAUGGCUCGUGAAAGAGCGAAACGAAAAGA----------------------------------AAAUUUGCUGAAUG-----------------A 1
AU---GGCAAGUUCUUAAUUCAAACAAAAUGUUUUAAAGGCGAUAAGAAAAACAUU----------------------------------AAAUUCUCUGAAAG-----------------A 1
-----AGGCAAAUUUUGAUACGUUUGAUAGUAAUAAUCAAAUUUAUUGAAUUCUAAC---------------------------------AAGAAAACUGAAUA-----------------A 1
-----AGGCGAAAUUUAAUUAAAAUUGAAAAGUAUCAAUUAACAUAUUAAAUUUACA---------------------------------AAUUAUUCUGAACG-----------------A 1
A-----GGCGUUCUUUUACAAAAUAUUAAUUGCUAAAUAUUUACUGAAAAAUAC---------------------------------UUAACAAGAACUGAAUG-----------------A 1
AAU--CGACAUUAAAAUAAAACACAUAUAAUAGAAGAAUUUAUAAACAAAAA--------------------------------------AUCUUUUCUGAAUGAC---------------A 1
AG---CUACAGCAUAUUGACUAAUAAAUGGCUCGUGAAAGAGCGAAACGAAAAGA-----------------------------------AAAUUUGCUGAAUG-----------------A 1
AG---CUACAGCAUAUUGACUAAUUAAUCGCUCGUGAAAGAGCGAAACGAAAAGA-----------------------------------AAAUUUGCUGAAUG-----------------A 1
AG---CUACAGCAUAUUGACUAAUUAAUGGCUCGUGAAAGAGCGAAACGAAAAGA-----------------------------------AAAUUUGCUGAAUG-----------------A 1
AG---CUACAGCAUAUUGACUAAUUAAUGGCUCGUGAAAGAGUGAAAUGAAAAGA-----------------------------------AAAUUUGCUGAAUG-----------------A 1
AU---GACGGGUGAGAAAUUUAUCUAUUUAACAAUUUUAAUAGUUUUGGUAAGUA-----------------------------------AAUUUAUCUGAAUA-----------------A 1
AU---GACGGGUGAGAAAUUUAUCUAUUUAACAAUUUUAAUAGUUUUGGUAAGUA-----------------------------------AAUUUAUCUGAAUG-----------------A 1
A----GACUAGAAUCAAUUCUUGAAUAUAUCUAAAGGGUAGAUAUGAUUAAAUAA-----------------------------------ACUAAUUCUGAAAA-----------------A 1
AUUGCUGCAGCAAUAGUGAGUAGAAGAACAAAGAUGCAUGAUCUUUGCUAU---------------------------------------AUGAAUUCUGAAU---G--------------U 1
GU---GACACACAAGCACAAAAGGUUAUAACGUUCGACUCGUUACUCGAAAAAGU-----------------------------------UAAUUUGCUGACG------------------U 1
A----AGCAAUGACUGUAGUAAUUUUACAAGUCAAAUGAUGAAGAUUUGAAGAA------------------------------------AAUAAUUCUGAAUG-----------------C 1
A----GGCUAGCUCAAACUAGAAAAAUUUGACGAACCUUAGAAUAGGUAAUUAAC-----------------------------------UUUUAUACGGAAC------------------G 1
A----UGCAGCAAUUUAUUUACAGAUGACAAAUAAUAAAAAUGGGACUCUUAU-------------------------------------GUAAAUGCUGAAUGU----------------U 1
AA--CGGCGUAUUGAUUAAUGGCUUUUUAACUUUUUAGUGACACUUGUUAUA--------------------------------------AAAAGUUCUGAAUU-----------------G 1
AAU--CUACAUAUACUGAGAGAAAAUGAUAGUAUACAAGGUCAAUGUAUAACAA------------------------------------UUUUUGCCUAAAG------------------- 1
AU---GGCAUGAUAAAAAUAAAGCGAAUAGGUGUAAGACAUAAGAUACAACUA-------------------------------------UGAUAUUCUGAAAG-----------------A 1
A----CGCCAAGACUUGAAGAAUCAAAUUUAGAUUGAUAUUCUAAAAAUAAAU-------------------------------------UAAUUUUCUGAAUA-----------------U 1
A----GAGGCGUAAUAUUUCUAAAAUAGUUGACAUUAAUUAUUGGGCAAAUGU-------------------------------------UAUUAAUCUGAAUG-----------------G 1
A----GGCUAGUCCAGACAAGAAAAUUUGACGAACCUUAGAAUAGGUAAUUAAC------------------------------------UUUUAUACGGAAC------------------G 1
A----GGCUUUCUUUAAGGAAAAGCUAUUCAAAAAUCUGAUGAAAAUGUUUUA-------------------------------------UCUUUUGGUGAAUU-----------------G 1
A----UACAGGGACAUAUGGUAAAAAGAAUAUUUUUGAAGAUUAUUAUUUUAC-------------------------------------UUCUUGUCUGAAUG-----------------G 1
AAU--CGCAGUGACAAAAUGAUAUUAGAAGAAAAUGUUUUAUUGAAGAACA---------------------------------------UCUUAUUCUGAAUA-----------------U 1
AGA--CAGCAAGUUCAAUGGAACAAUUCUAGAAAAGAAUUAUUGAUUGA-----------------------------------------UUAAUUGCUGAAUGGU---------------U 1
AU---GACAGUAUUGAAAACAAAUCUUUUCUUUGUAAUGUAUUAAAAAAAUU--------------------------------------UCAAAUGCUGAAUG-----------------A 1
UA---GGCGUUGAAGAGAAAAUAACUUUUGUUUGCGGACAAAAAAAAUGAUA--------------------------------------GGUUAUUCUGAAUG-----------------A 1
AAG--CGCAAAUAACAAGAUGAUGGAAGAUGAAAAUGGUCAGUAGUCUU-----------------------------------------UGAAUUUCUGAAAGU----------------A 1
AAU--CGCAAUGACACACAUUUUUUGAUGAUAUUUAGAAAAAUAUAAUGA----------------------------------------AAAAAUUCUGAAUA-----------------U 1
AAU--CUGCAACGAUUUUAACAGAUGAGUAUUUUAAUAUUUGGAAAUAUG----------------------------------------UAAUCUUCUGAAUA-----------------G 1
A----UGGAGAAAGUCUCAUCUUCCAGCUUGCGACAUCUGAUCAACCAUCG---------------------------------------CUUAUUGCCGGAAG-----------------A 1
AU---GACAGGAUGAAGAUUAUUCUAUUACAUAAUUGGUGUAAGAAAAUA----------------------------------------AAAAGUGCUGAAUA-----------------U 1
AUC--UACAUGUAAAACAAGAAAUUUUCUUAUGUUCCUUUUUGAACUAAA----------------------------------------AAGUUUUCCGAAA------------------G 1
AUC--UGCUAUAGAUAAAGAAAAUAAUGGAGCAGAACUCCCUAUAGUUUA----------------------------------------AAUUUUUCUGAAA------------------G 1
AUC--UGCUAUAGAUAAAGAAAAUAAUGGAGCAGAACUCCUUUUAAUUUA----------------------------------------AAUUUUUCUGAAAG------------------ 1
A----GGCAAUAAAAGAUUAUUUAUGAUAUUGAACAAUUAUCAAUGAAUA----------------------------------------AAACAAUCUGAAUG-----------------A 1
A----UGCCGAGCCAAAUGUUGAUAGCAAGCGAUAUAAGAACGCUAAAAA----------------------------------------ACAUUUGAUGAAAU-----------------G 1
AA--CCCGACAUUAUGAAUAAUUCUAUUAUAAUGGGUAUAAAAAUUAUU-----------------------------------------AUUACUUCUGAAA------------------G 1
AAC--CCGACAUUAUAAAUAAUUCUAUUAUAAUUGGUAUAAAGACUAUU-----------------------------------------AUUACUUCUGAAA------------------G 1
AAC--CCGACAUUAUGAAUAAUUCUAUUAUAAUGGGUAUAAAAAUUAUU-----------------------------------------AUUACUUCUGAAA------------------G 1
AU---GACGUUACGAAUUGAAGAUUUAGAUACAUGUUUUUUUGUAAUCC-----------------------------------------UAAAUUUCUGAAUG-----------------A 1
AUC--GAGAUAAUUACAGGAUAUUUAAAAGAUAUUAGCAAUUAUCUUA------------------------------------------CAAACAUCUGAAUG-----------------A 1
AUC--UACAAGAUAAAAUUAAGAGCAAAAAAGAGAGCAAAAAACUCAA------------------------------------------AUAAUAACUGAAUG-----------------G 1
AUC--UACGUUUGAAGAUAAUUCUUUCCGAAUGGCAUUUAUUCAAAAAG-----------------------------------------AAAAAAUCCGAAAG------------------ 1
A-----CGCGAGAGCAUUUUAGAAAAAUGAACUUGUUUGAAGAGUUUGGU---------------------------------------UUCAUAUGC-GAAUG-----------------G 1
AU---GGCAGCAAACAAAAAGUUUCCUCAAUAGAGUAUUGAGUUUUU-------------------------------------------AAAACAUCUGAAAG-----------------A 1
G----GGGCUAAAUUUGAUUUUUCGAGAGUUGUCGAAUUACAAGUUUG------------------------------------------AAAAAUUCUGAAUA-----------------A 1
AAA--GACAGUUUUUGAUAACUUAGAUAUAAAGUUGUAUAUUAUU---------------------------------------------CUAAAUGCUGAAUG-----------------G 1
AAU--CGACAUUGAAACUAUAUUUUACUAAUAGAUUAAAAAAAUA---------------------------------------------AUAAGUUCUGAAUG-----------------A 1
A----CACGAGAGCAGGUUGACCAAGAAGAUCAUAAUAUUUCUUAA--------------------------------------------UUCAACUCUGAACG-----------------U 1
AAA-CCCUGGAAAUUUUAAAAAGAUGUCAUUUAAACACUUAU------------------------------------------------UUAAAAUCUGAAUG----------------UC 1
AAA-CCCUGGAAAUUUUUUUGAUAUGUCAUUUACAUUUUAUA------------------------------------------------AAAAAAUCUGAAUG----------------UC 1
AAAAUGUGCAGACACUACAUUAGAAUGUAUUAAUGCUUAAAA------------------------------------------------UAUAUUUCUGAAUG-----------------U 1
AAAC-CCUGGAAAUUUUUUUGAUAUGUCAUUUACAUUUUAUA------------------------------------------------AAAAAAUCUGAAU----------------GUC 1
AU---GGCAUUUAUUAUAAAAUAAAAUCUUUCGAAUGAUUAUCGA---------------------------------------------AAAACUUCUGAAAG-----------------A 1
-AAACCCUGGAAAUUUUUUUAAUAUGUCAUUUACAUUUUAU-------------------------------------------------AAAAAAUCUGAAUG----------------UC 1
A-----GGCGAUUUUACAAAUCAAGAAUAAUUGGUAAUUCUAAUGC--------------------------------------------UGAAUGACUGAAUG-----------------A 1
A-----GGCGUUCUUUUACAAGAAUAUUUUUGGUAAAUAUUUUAAU--------------------------------------------GAAAAUGCUGAAUG-----------------A 1
A----GGCGAAGAAAUAAAUUUUAUAAGAGGAUUUAUAGAAAAUU---------------------------------------------AAUGAUAAUGAAUU-----------------G 1
AA---GUGUGCAGAUAAAACAUUUGGAUAUGUUUAUGCUUAAAA----------------------------------------------UAUAUUUCUGAAUG-----------------A 1
AAAA-GUGCAGACGAUACAUUAUUGUAUGUUAAUGCUUAAAA------------------------------------------------CAUAUUUCUGAAUG-----------------U 1
AAAC-CCUGGAAAUUUUUUUAAUAUGUCAUUUACAUUUUAU-------------------------------------------------AAAAAAUCUGAAU----------------GUC 1
AAAC-GUGCAGACGAUACAUUAGAAUGUAUUAAUGCUUAAAA------------------------------------------------UAUAUUUCUGAAUG-----------------U 1
AAAU-GUGCAGACGAUACAUUAGAAUGUAUUAAUGCUUAAAA------------------------------------------------UAUAUUUCUGAAUG-----------------U 1
AAAU-GUGCAGACGAUACAUUAUUGUAUGUUAAUGCUUAAAA------------------------------------------------UAUAUUUCUGAAUG-----------------U 1
AAAU-GUGCAGACGAUGCAUUAGGAUGUAUUAAUGCUUAAAA------------------------------------------------UAUAUUUCUGAAUG-----------------U 1
AAAU-GUGCAGAUAAAACAUUUAGAUAUGUUUAUGCUUAAAA------------------------------------------------UAUAUUUCUGAAUG-----------------U 1
AAAU-GUGCAGAUAAAACAUUUGGAUAUGUUUUUGCUUAAAA------------------------------------------------UAUAUUUCUGAAUG-----------------U 1
AAGU-GUGCAGACGAUACAUUAUAGUAUGUUAGUGCUUAAAA------------------------------------------------CAUAUUUCUGAAUG-----------------U 1
AAU--GUGCAGAUGAACGAUACUGAUAUUGUUAUGCUUAAAAC-----------------------------------------------AAAUAUUCUGAAUA-----------------U 1
AAU--GUGCAGAUGAACGAUACUGAUAUUGUUAUGCUUAAAAC-----------------------------------------------AAAUAUUCUGAAUG-----------------U 1
AU---GGCAUUACGAUCGAUAAAGAAAUCAAUGCAUGGUUGAUG----------------------------------------------UUUUCUUCUGAAAG-----------------A 1
UC---CCGAGCUCUUUUUAACCAACGUAAAAUUGGGAAAAAUGA----------------------------------------------GGCAAUUCUGAAAG-----------------A 1
A-----GACAAGAAAUUGGAUUAAAUAGAAAUAUUGAAAUUUG-----------------------------------------------AUUUCUGCUGAAUGGU---------------U 1
AA---GUGUGCAGAUAAAACAUUGGAUAUGUUUAUGCUUAAAA-----------------------------------------------UAUAUUUCUGAAUG-----------------U 1
AA---GUGUGCAGAUAAAACAUUUGGAUAUGUUAUGCUUAAAA-----------------------------------------------UAUAUUUCUGAAUG-----------------U 1
AAAC-CCUGGAAAUUUUAAAAAGAUGUCAUUUACACUUAU--------------------------------------------------UUAAAAUCUGAAU----------------GUC 1
AAAU-GUGCAGAUAAAACAUUGGAAAUGUUUAUGCUUAAAA-------------------------------------------------UCUAUUUCUGAAUG-----------------U 1
AAAU-GUGCAGAUAAAACAUUUGGAUAUGUUAUGCUUAAAA-------------------------------------------------UAUAUUUCUGAAUG-----------------U 1
AAC--CCGACUUUAUUACAAUAAUAUGAUCUAAUUUUAUUAUG-----------------------------------------------ACUAUUUCUGAAA------------------G 1
AAUU-GUGCAGAUAAAACAUUGGAUAUGUUUAUGCUUAAAA-------------------------------------------------UAUAUUUCUGAAUG-----------------U 1
AC---GCCGUGAUUUCACUUUGUUAAAUAGGCAAUAACUUAGA-----------------------------------------------UCUCACGCUGAAG------------------C 1
AU---GACGGGUGAGAAAUUUAUCUAUUUAAUAAUUCUAAUGA-----------------------------------------------UUUUGAUAAGUAA------------------A 1
GA---GACAGGUUCUGAGUCAGGAAAAAAUAAGAUCACAGA-------------------------------------------------ACAAAUGCUGAAGAG----------------U 1
GA---GACAGGUUCUGAGUCAGGAAAAAAUAAGAUCACAGA-------------------------------------------------ACAAGUGCUGAAGAG----------------U 1
AAAU-GUGCAGAAAAUUUGCAAGAUAUAUUGUGCUAAAA---------------------------------------------------UAUUAUUCUGAAUG-----------------U 1
AAC--CCUGGAAAUUUUAAAAAGAUGUCAUUUACACUUAU--------------------------------------------------UUAAAAUCUGAAUG-----------------U 1
AG---CUCUCGGUGAAGAACCGGUCUGUAUCAACCGCUAGAU------------------------------------------------ACUCAAGCUGAAG------------------U 1
AGU--CCGUACACAAUAUUUUAUUAUAAGACGAAUAAUAU--------------------------------------------------AUAAUAUCUGAAUG-----------------U 1
AU---CUACGUUGGAUAUAACGUUUACGUAUGGGUAAAAAAAUCUA------------------------------------------------UUAUGUGGU------------------G 1
AU---GUCGUAGUAUUGGUACUCUCUAAAAAUUAACUAGUAA------------------------------------------------CGAUCUGCUGAAG------------------C 1
GA---GACAGGUUCUGAAUCAGGAGAAAUAAGAUCACAGA--------------------------------------------------ACAAAUGCUGAAGAG----------------U 1
GA---GACAGGUUCUGAGUCAGGAAACAGAAGAUCACAGA--------------------------------------------------AUAAGUGCUGAAGAG----------------U 1
UA---GGCGUGAAAUGAUGAAACAGUAUGUUUAAAAUUGUU-------------------------------------------------UAAAAUUCUGAAUG-----------------A 1
A----GACAAUGACAUUUAGAAGAAAAGAUGCAAAAAUCUU-------------------------------------------------UACUAAUGUGAAUG-----------------A 1
AAU--CCGUGCAAAGAAUUUAUUUAAUUGGAUUAUAAUA---------------------------------------------------AUAAUUUCUGAAUG-----------------C 1
AAUC-GUGCAUAAAAUUACAAGAGAUAUUGUGCUAAAA----------------------------------------------------UAUUAUUCUGAAUA-----------------U 1
AU---GGCAGAAACAAAUAAUCAAGGCUCUGCAUGAACCA--------------------------------------------------AAACAUUCUGAAAG-----------------A 1
AC---GGCACGAUUUCAUUCUAACAAUUGUUGAGCACAA---------------------------------------------------CAACAUUCCGAAAG-----------------A 1
GA---GACAGGUUCUAUAAUGACAAGAAGAUCGUCAGG----------------------------------------------------AAAACUGCUGAAGAG----------------U 1
A----GACAAUGACUAAGAAGAAAAGAUGCAAAAAUCUU---------------------------------------------------UACUAAUGUGAAUG-----------------A 1
A----GGCAAACAAACAGAUAAUUAUAUGAAAGCAUAUCAU-------------------------------------------------AACAAAUCUGUAU------------------- 1
AGU--CCGUACAAAUUUCUUAUUAUAAGUCGAAUAAU-----------------------------------------------------AAUAAAUCUGAAUG-----------------U 1
AGU--CCGUACAAAUUUCUUAUUAUAGAGUGAAUAAU-----------------------------------------------------AAUAAAUCUGAAUG-----------------U 1
A----AGCAAGGACUCUUGUAAAAAAGAAAUUACUAAG----------------------------------------------------GAAAUUUCUGAAUG-----------------G 1
AA--UGCGCAGAUAAAA-UCAGACCAAUAUGCUAAAU-----------------------------------------------------UGAUUAUCUGAAUG-----------------U 1
A---GUGCAUUUCAGAAGGUUUCACAGUCAAUGAAA------------------------------------------------------AUAUGUUCUGAAUG-----------------G 1
AAG--UUGGAAUAUAUUAGAAGAUAUUAUAAGAU--------------------------------------------------------UGAUAUGCUGAAUG-----------------G 1
AAG--CCGUGCAAAUUUCUUAAUUGGAUUAUAA---------------------------------------------------------UUAUAUUCUGAAUG-----------------C 1
AU---GGCAAAACAAAAUUUUUUUGCAAAUCAAA--------------------------------------------------------AAAACUUCCGAAAG-----------------A 1
AU---GGCAAAACAAAAUUUUUUUGCAAAUCAA---------------------------------------------------------AAAACUUCCGAAAG-----------------A 1
AAUC-GACAAUCUUAUAUUAACAGAAAUA------------------------------------------------------------UGGACAUUACACAUG-----------------U 1
AU---GCCGAAAUAUUAGCUUAUAUGAGAUAAG---------------------------------------------------------AUUUUUGCUGAAG------------------C 1
A----UACCUGGUUGCGCAUACCAUAAAAAUG----------------------------------------------------------CAUUUAUCUGAAAG-----------------A 1
A---CACCGGAUAGUAGUUUCUAGUAAAUGAU----------------------------------------------------------GAUCCUGCUGAAG------------------C 1
AC---GCCGAAAAAAAGAAAUCCUUAACCCGU----------------------------------------------------------UUUUUCGCUGAAG------------------C 1
AU---GUCAACGUUCAGUUUAUGGAGUAUAAA----------------------------------------------------------AAGAUCGCUGAAG------------------C 1
AAG--GACUAGAAUAUUAGAAAAUAAUAA-------------------------------------------------------------AGCUUUUCUGAAAA-----------------A 1
A----GAGUAGAUAUAUGGCAAGAAUUAUA------------------------------------------------------------CAUUUAUCUGAACG-----------------G 1
AUC--CCUUGUGAAGAUAAAACACAUUGG-------------------------------------------------------------UUAAAAUCUGAACG------------------ 1
AUC--CGCGACAUAUAAGAUCACUCCUUU-------------------------------------------------------------UAUGUAGCUGAAG------------------C 1
AU---GGCAAAUGUUUGGUUGGCAAAA---------------------------------------------------------------AACAAAUCUGAACG-----------------A 1
AU---GGCAUCCUUAACGGGACAGAA----------------------------------------------------------------UGAUGAUCUGAAUG-----------------G 1
A----GGCGAGAAGAAUUAAAGAAUU----------------------------------------------------------------AAUAGUAAUGAAUU-----------------G 1
AAG--UUGGAAUAUAUUAGAAGAU------------------------------------------------------------------UAAUAUGCUGAAUG-----------------G 1
AU---GACGGGUUUUUGAAAAAUCA-----------------------------------------------------------------AAACUAUCUGAAUG-----------------G 1
AAC--UUGGAUAUAUUAGAAGAU-------------------------------------------------------------------UAAUAUGCUGAAUG-----------------G 1
AAUC-CGCACAAAAUUAAAAA--------------------------------------------------------------------CAAUUUUGCUGAAUG-----------------G 1
A----GAGGCAGUUUACAAUAACU-------------------------------------------------------------------AUUGGUGUG---------------------U 1
A----GAGGCAGUUUACGAUAACU-------------------------------------------------------------------AUUGGUGUG---------------------U 1
A----GGCGAGAAAAAUU------------------------------------------------------------------------AAUGAUAAUGAAUU-----------------G 1
A----GGCGAGAAAGAUU------------------------------------------------------------------------AAUGAUAAUGAAUU-----------------G 1
AAU--CGUGAAACAA---------------------------------------------------------------------------AAUUUUGCUGAAAG-----------------U 1
AAU--CGUGAAACA----------------------------------------------------------------------------AAAUUUGCUGAAAG-----------------U 1
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -1493.80 | 30.5 | 30 |
|
| 2 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -3749.18 | 38 | 37 |
G-quadruplex |
| 3 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -3821.02 | 38 | 38 |
|
| 4 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -3916.69 | 40 | 40 |
|
| 5 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -4113.74 | 41 | 40 |
G-quadruplex |
| 6 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -4158.27 | 40 | 40 |
G-quadruplex |
| 7 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -4165.86 | 38 | 38 |
|
| 8 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -4187.45 | 37 | 37 |
|
| 9 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -4205.50 | 38 | 38 |
|
| 10 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -4311.01 | 41 | 40.5 |
|
| 11 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -4318.88 | 39 | 38 |
|
| 12 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -4348.21 | 39 | 39 |
|
| 13 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -4354.37 | 40 | 40 |
|
| 14 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -4427.16 | 41 | 40 |
|
| 15 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -4505.25 | 45 | 45 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 16 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -4519.46 | 45 | 44 |
|
| 17 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -4731.14 | 41 | 40.5 |
|
| 18 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -4801.15 | 42 | 42 |
|
| 19 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -4968.55 | 46 | 45 |
G-quadruplex fragment |
| 20 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -4984.43 | 41 | 41 |
Pseudoknot geometry |
| 21 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -5005.03 | 43 | 43 |
|
| 22 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -5238.42 | 43 | 42 |
tRNA D-loop |
| 23 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -5266.35 | 41 | 41 |
|
| 24 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -5311.27 | 45 | 43.5 |
|
| 25 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -5341.25 | 45 | 45 |
|
| 26 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -5385.90 | 40 | 39.5 |
Pseudoknot geometry with G-bulge |
| 27 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -5436.47 | 41 | 41 |
|
| 28 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -5445.70 | 43 | 42.5 |
|
| 29 |
Motif group HL_86109.1
Basepair signature:
|
0.00 | -5476.89 | 44 | 44 |
|
| 30 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -5511.31 | 45.5 | 45 |
|
| 31 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -5554.02 | 43.5 | 43 |
|
| 32 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -5574.16 | 44 | 44 |
|
| 33 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -5586.67 | 44.5 | 44 |
|
| 34 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -5593.59 | 42 | 42 |
|
| 35 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -5616.32 | 45 | 45 |
|
| 36 |
Motif group HL_16991.1
Basepair signature:
|
0.00 | -5631.40 | 45 | 45 |
G-quadruplex fragment |
| 37 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -5640.79 | 46 | 46 |
|
| 38 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -5644.01 | 45 | 45 |
tRNA D-loop |
| 39 |
Motif group HL_02483.1
Basepair signature:
|
0.00 | -5681.43 | 45 | 45 |
|
| 40 |
Motif group HL_98864.1
Basepair signature:
|
0.00 | -5750.23 | 47 | 47 |
T-loop with unstacked turn |
| 41 |
Motif group HL_68257.1
Basepair signature:
|
0.00 | -5755.82 | 44 | 44 |
|
| 42 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -5756.38 | 45 | 45 |
|
| 43 |
Motif group HL_70658.1
Basepair signature:
|
0.00 | -5764.10 | 44 | 44 |
|
| 44 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -5790.56 | 43.5 | 44 |
|
| 45 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -5803.32 | 46 | 46 |
|
| 46 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -5834.22 | 48 | 46 |
|
| 47 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -5869.58 | 44 | 44 |
|
| 48 |
Motif group HL_02887.3
Basepair signature:
|
0.00 | -5905.61 | 47 | 47 |
T-loop with 3 stacked bulged bases |
| 49 |
Motif group HL_85434.1
Basepair signature:
|
0.00 | -5943.93 | 48 | 47 |
|
| 50 |
Motif group HL_68767.1
Basepair signature:
|
0.00 | -5975.94 | 44 | 44 |
tRNA D-loop |
| 51 |
Motif group HL_15118.1
Basepair signature:
|
0.00 | -5979.83 | 45 | 45 |
|
| 52 |
Motif group HL_06226.4
Basepair signature:
|
0.00 | -6005.82 | 45 | 45 |
|
| 53 |
Motif group HL_50779.4
Basepair signature:
|
0.00 | -6008.33 | 47 | 47 |
|
| 54 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -6026.95 | 44.5 | 45 |
|
| 55 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -6056.99 | 46 | 46 |
tRNA D-loop |
| 56 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -6059.75 | 44.5 | 44.5 |
|
| 57 |
Motif group HL_94376.1
Basepair signature:
|
0.00 | -6074.38 | 45 | 45 |
Pseudoknot geometry |
| 58 |
Motif group HL_18978.1
Basepair signature:
|
0.00 | -6102.43 | 47 | 47 |
|
| 59 |
Motif group HL_86012.1
Basepair signature:
|
0.00 | -6103.86 | 48 | 48 |
T-loop with unstacked turn |
| 60 |
Motif group HL_19210.3
Basepair signature:
|
0.00 | -6109.80 | 46 | 46 |
|
| 61 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -6136.83 | 46 | 46 |
|
| 62 |
Motif group HL_11542.1
Basepair signature:
|
0.00 | -6143.12 | 45 | 44 |
|
| 63 |
Motif group HL_41543.1
Basepair signature:
|
0.00 | -6216.86 | 46 | 45 |
|
| 64 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -6228.67 | 45 | 45 |
|
| 65 |
Motif group HL_70751.1
Basepair signature:
|
0.00 | -6242.13 | 45.5 | 46 |
|
| 66 |
Motif group HL_87463.1
Basepair signature:
|
0.00 | -6283.83 | 47 | 47 |
|
| 67 |
Motif group HL_83808.4
Basepair signature:
|
0.00 | -6301.10 | 47 | 47 |
Pseudoknot |
| 68 |
Motif group HL_88558.1
Basepair signature:
|
0.00 | -6318.15 | 45 | 45 |
|
| 69 |
Motif group HL_91503.7
Basepair signature:
|
0.00 | -6343.88 | 46 | 46 |
|
| 70 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -6349.81 | 46 | 46 |
tRNA D-loop |
| 71 |
Motif group HL_80411.1
Basepair signature:
|
0.00 | -6370.39 | 47 | 46 |
tRNA D-loop |
| 72 |
Motif group HL_57863.1
Basepair signature:
|
0.00 | -6380.72 | 47 | 47 |
G-quadruplex fragment |
| 73 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -6392.06 | 46 | 46 |
tRNA D-loop |
| 74 |
Motif group HL_01255.1
Basepair signature:
|
0.00 | -6392.74 | 45 | 45 |
|
| 75 |
Motif group HL_78284.1
Basepair signature:
|
0.00 | -6410.35 | 44 | 43 |
|
| 76 |
Motif group HL_36684.4
Basepair signature:
|
0.00 | -6429.09 | 45.5 | 45.5 |
|
| 77 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -6431.63 | 43 | 42 |
|
| 78 |
Motif group HL_80599.2
Basepair signature:
|
0.00 | -6445.61 | 47.5 | 48 |
|
| 79 |
Motif group HL_29762.1
Basepair signature:
|
0.00 | -6452.01 | 45 | 45.5 |
|
| 80 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -6470.70 | 47 | 47 |
|
| 81 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -6500.72 | 46 | 46 |
|
| 82 |
Motif group HL_50418.1
Basepair signature:
|
0.00 | -6564.04 | 46 | 46 |
|
| 83 |
Motif group HL_81545.2
Basepair signature:
|
0.00 | -6564.20 | 46.5 | 46.5 |
|
| 84 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -6569.57 | 44 | 43 |
|
| 85 |
Motif group HL_68572.1
Basepair signature:
|
0.00 | -6591.57 | 43 | 43 |
|
| 86 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -6636.55 | 45 | 45.5 |
|
| 87 |
Motif group HL_93383.1
Basepair signature:
|
0.00 | -6639.13 | 47.5 | 48 |
|
| 88 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -6654.23 | 48 | 48 |
|
| 89 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -6665.57 | 47 | 47 |
|
| 90 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -6669.06 | 42 | 41 |
|
| 91 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -6678.94 | 46 | 46 |
|
| 92 |
Motif group HL_29129.3
Basepair signature:
|
0.00 | -6686.76 | 46 | 46 |
|
| 93 |
Motif group HL_38649.1
Basepair signature:
|
0.00 | -6715.10 | 45 | 45 |
|
| 94 |
Motif group HL_93135.1
Basepair signature:
|
0.00 | -6763.89 | 46 | 46 |
Pseudoknot |
| 95 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -6794.95 | 44 | 43 |
|
| 96 |
Motif group HL_01962.2
Basepair signature:
|
0.00 | -6837.37 | 45 | 45.5 |
|
| 97 |
Motif group HL_40252.4
Basepair signature:
|
0.00 | -6851.91 | 44 | 44 |
|
| 98 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -6854.19 | 47.5 | 48 |
|
| 99 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -6860.48 | 44.5 | 45 |
|
| 100 |
Motif group HL_74292.1
Basepair signature:
|
0.00 | -6867.41 | 47 | 47 |
|
| 101 |
Motif group HL_97733.1
Basepair signature:
|
0.00 | -6868.86 | 47 | 47 |
|
| 102 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -6872.60 | 45 | 45 |
tRNA D-loop |
| 103 |
Motif group HL_18423.1
Basepair signature:
|
0.00 | -6882.49 | 46 | 46 |
|
| 104 |
Motif group HL_60266.1
Basepair signature:
|
0.00 | -6947.24 | 44 | 44 |
|
| 105 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -6951.85 | 47 | 47 |
|
| 106 |
Motif group HL_93438.2
Basepair signature:
|
0.00 | -6957.72 | 46.5 | 47 |
|
| 107 |
Motif group HL_66853.7
Basepair signature:
|
0.00 | -6999.19 | 46 | 46 |
|
| 108 |
Motif group HL_67079.1
Basepair signature:
|
0.00 | -7042.96 | 44 | 44.5 |
|
| 109 |
Motif group HL_55436.1
Basepair signature:
|
0.00 | -7074.08 | 47 | 46.5 |
|
| 110 |
Motif group HL_29958.1
Basepair signature:
|
0.00 | -7079.05 | 44.5 | 44 |
|
| 111 |
Motif group HL_50860.2
Basepair signature:
|
0.00 | -7081.21 | 47 | 47.5 |
|
| 112 |
Motif group HL_15802.1
Basepair signature:
|
0.00 | -7176.61 | 48 | 48 |
|
| 113 |
Motif group HL_26934.1
Basepair signature:
|
0.00 | -7190.87 | 49 | 49 |
|
| 114 |
Motif group HL_59330.1
Basepair signature:
|
0.00 | -7192.42 | 49 | 49 |
|
| 115 |
Motif group HL_61996.2
Basepair signature:
|
0.00 | -7359.38 | 46.5 | 46.5 |
|
| 116 |
Motif group HL_69139.1
Basepair signature:
|
0.00 | -7360.08 | 44 | 44 |
|
| 117 |
Motif group HL_45175.1
Basepair signature:
|
0.00 | -7401.78 | 47 | 46.5 |
tRNA D-loop |
| 118 |
Motif group HL_73255.1
Basepair signature:
|
0.00 | -7410.65 | 47 | 47 |
|
| 119 |
Motif group HL_20743.5
Basepair signature:
|
0.00 | -7475.53 | 47 | 47.5 |
|
| 120 |
Motif group HL_34964.1
Basepair signature:
|
0.00 | -7531.25 | 45.5 | 45.5 |
|
| 121 |
Motif group HL_25847.2
Basepair signature:
|
0.00 | -7552.02 | 46 | 46 |
|
| 122 |
Motif group HL_88205.2
Basepair signature:
|
0.00 | -7560.95 | 46 | 46.5 |
|
| 123 |
Motif group HL_18565.1
Basepair signature:
|
0.00 | -7564.88 | 47 | 47.5 |
|
| 124 |
Motif group HL_28252.8
Basepair signature:
|
0.00 | -7574.92 | 46 | 46.5 |
T-loop with 2 stacked bulged bases |
| 125 |
Motif group HL_53454.2
Basepair signature:
|
0.00 | -7635.05 | 45 | 45 |
|
| 126 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -7637.96 | 46.5 | 47 |
|
| 127 |
Motif group HL_99867.1
Basepair signature:
|
0.00 | -7640.82 | 46 | 46.5 |
|
| 128 |
Motif group HL_75293.5
Basepair signature:
|
0.00 | -7650.75 | 46 | 46 |
|
| 129 |
Motif group HL_73266.9
Basepair signature:
|
0.00 | -7696.12 | 47 | 47.5 |
|
| 130 |
Motif group HL_38046.1
Basepair signature:
|
0.00 | -7702.99 | 48 | 48 |
|
| 131 |
Motif group HL_85367.2
Basepair signature:
|
0.00 | -7828.49 | 47.5 | 48 |
|
| 132 |
Motif group HL_33983.1
Basepair signature:
|
0.00 | -7830.02 | 47.5 | 47.5 |
|
| 133 |
Motif group HL_36335.1
Basepair signature:
|
0.00 | -7954.13 | 46 | 46.5 |
|
| 134 |
Motif group HL_83632.1
Basepair signature:
|
0.00 | -8074.56 | 47 | 47.5 |
tRNA anticodon loop |
| 135 |
Motif group HL_80362.1
Basepair signature:
|
0.00 | -8083.50 | 48 | 48 |
|
| 136 |
Motif group HL_84299.4
Basepair signature:
|
0.00 | -8138.96 | 47.5 | 47.5 |
|
| 137 |
Motif group HL_25061.1
Basepair signature:
|
0.00 | -8246.63 | 45.5 | 46 |
|
| 138 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -8279.43 | 45 | 45.5 |
|
| 139 |
Motif group HL_80008.1
Basepair signature:
|
0.00 | -8289.90 | 48 | 48 |
|
| 140 |
Motif group HL_72628.1
Basepair signature:
|
0.00 | -8340.10 | 47.5 | 48 |
|
| 141 |
Motif group HL_20167.2
Basepair signature:
|
0.00 | -8451.08 | 47 | 47.5 |
|
| 142 |
Motif group HL_53504.3
Basepair signature:
|
0.00 | -8545.89 | 45 | 45 |
|
| 143 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -8653.32 | 47 | 47 |
tRNA anticodon loop |
| 144 |
Motif group HL_37369.2
Basepair signature:
|
0.00 | -8696.43 | 49.5 | 49.5 |
|
| 145 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -8744.57 | 47 | 47.5 |
|
| 146 |
Motif group HL_38808.1
Basepair signature:
|
0.00 | -8770.13 | 46 | 46.5 |
|
| 147 |
Motif group HL_64690.6
Basepair signature:
|
0.00 | -8772.00 | 47 | 47.5 |
|
| 148 |
Motif group HL_99748.1
Basepair signature:
|
0.00 | -8946.52 | 48.5 | 48.5 |
Other HL |
| 149 |
Motif group HL_42998.2
Basepair signature:
|
0.00 | -9058.77 | 48.5 | 48.5 |
|
| 150 |
Motif group HL_27670.2
Basepair signature:
|
0.00 | -9087.19 | 47.5 | 47.5 |
T-loop with unstacked turn |
| 151 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -9089.48 | 44 | 43 |
|
| 152 |
Motif group HL_01609.3
Basepair signature:
|
0.00 | -9174.66 | 47.5 | 47.5 |
T-loop with 2 bulged bases not stacked |
| 153 |
Motif group HL_85993.1
Basepair signature:
|
0.00 | -9197.68 | 48 | 48.5 |
|
| 154 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -9233.12 | 42 | 41 |
|
| 155 |
Motif group HL_25967.2
Basepair signature:
|
0.00 | -9252.94 | 49 | 49 |
|
| 156 |
Motif group HL_89567.2
Basepair signature:
|
0.00 | -9267.37 | 48 | 48.5 |
|
| 157 |
Motif group HL_51447.1
Basepair signature:
|
0.00 | -9278.04 | 49.5 | 50 |
|
| 158 |
Motif group HL_89893.1
Basepair signature:
|
0.00 | -9281.85 | 50 | 50 |
|
| 159 |
Motif group HL_12870.1
Basepair signature:
|
0.00 | -9344.12 | 44 | 44 |
|
| 160 |
Motif group HL_47854.1
Basepair signature:
|
0.00 | -9413.72 | 49 | 49 |
|
| 161 |
Motif group HL_07951.3
Basepair signature:
|
0.00 | -9418.07 | 46 | 46 |
tRNA D-loop |
| 162 |
Motif group HL_04171.7
Basepair signature:
|
0.00 | -9438.06 | 45 | 45.5 |
|
| 163 |
Motif group HL_97983.1
Basepair signature:
|
0.00 | -9597.37 | 47 | 47.5 |
|
| 164 |
Motif group HL_21372.1
Basepair signature:
|
0.00 | -9605.87 | 48 | 48 |
|
| 165 |
Motif group HL_02817.2
Basepair signature:
|
0.00 | -9686.78 | 48.5 | 48.5 |
|
| 166 |
Motif group HL_22622.1
Basepair signature:
|
0.00 | -9710.31 | 48 | 48 |
|
| 167 |
Motif group HL_09452.1
Basepair signature:
|
0.00 | -9711.47 | 48 | 48 |
|
| 168 |
Motif group HL_42046.2
Basepair signature:
|
0.00 | -9872.55 | 48 | 48.5 |
|
| 169 |
Motif group HL_13529.1
Basepair signature:
|
0.00 | -9923.40 | 47.5 | 47.5 |
|
| 170 |
Motif group HL_99040.1
Basepair signature:
|
0.00 | -9999.00 | 50.5 | 51 |
|
| 171 |
Motif group HL_97917.2
Basepair signature:
|
0.00 | -9999.00 | 46 | 46.5 |
|
| 172 |
Motif group HL_94980.1
Basepair signature:
|
0.00 | -9999.00 | 52 | 52.5 |
|
| 173 |
Motif group HL_93535.1
Basepair signature:
|
0.00 | -9999.00 | 49 | 49.5 |
|
| 174 |
Motif group HL_93324.4
Basepair signature:
|
0.00 | -9999.00 | 47 | 47 |
Pseudoknot geometry |
| 175 |
Motif group HL_89199.2
Basepair signature:
|
0.00 | -9999.00 | 50 | 50.5 |
Mini UNCG |
| 176 |
Motif group HL_87954.2
Basepair signature:
|
0.00 | -9999.00 | 49 | 49.5 |
|
| 177 |
Motif group HL_87553.1
Basepair signature:
|
0.00 | -9999.00 | 47.5 | 47.5 |
|
| 178 |
Motif group HL_86883.1
Basepair signature:
|
0.00 | -9999.00 | 50.5 | 50.5 |
|
| 179 |
Motif group HL_86870.2
Basepair signature:
|
0.00 | -9999.00 | 49 | 49 |
|
| 180 |
Motif group HL_86769.4
Basepair signature:
|
0.00 | -9999.00 | 46 | 46 |
|
| 181 |
Motif group HL_82710.2
Basepair signature:
|
0.00 | -9999.00 | 50.5 | 50.5 |
|
| 182 |
Motif group HL_81538.2
Basepair signature:
|
0.00 | -9999.00 | 47 | 47 |
GNRA with tandem sheared |
| 183 |
Motif group HL_81100.2
Basepair signature:
|
0.00 | -9999.00 | 50.5 | 50.5 |
|
| 184 |
Motif group HL_80922.2
Basepair signature:
|
0.00 | -9999.00 | 48 | 48 |
|
| 185 |
Motif group HL_80709.3
Basepair signature:
|
0.00 | -9999.00 | 50 | 50.5 |
|
| 186 |
Motif group HL_78677.1
Basepair signature:
|
0.00 | -9999.00 | 51.5 | 51.5 |
|
| 187 |
Motif group HL_78347.4
Basepair signature:
|
0.00 | -9999.00 | 46.5 | 46 |
|
| 188 |
Motif group HL_78197.1
Basepair signature:
|
0.00 | -9999.00 | 46 | 46.5 |
|
| 189 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -9999.00 | 47 | 47 |
|
| 190 |
Motif group HL_77436.5
Basepair signature:
|
0.00 | -9999.00 | 47 | 47 |
T-loop related |
| 191 |
Motif group HL_77082.1
Basepair signature:
|
0.00 | -9999.00 | 47.5 | 47.5 |
Pseudoknot geometry |
| 192 |
Motif group HL_76094.1
Basepair signature:
|
0.00 | -9999.00 | 51 | 51.5 |
|
| 193 |
Motif group HL_75660.5
Basepair signature:
|
0.00 | -9999.00 | 49 | 49.5 |
|
| 194 |
Motif group HL_71391.1
Basepair signature:
|
0.00 | -9999.00 | 50.5 | 50.5 |
|
| 195 |
Motif group HL_70782.2
Basepair signature:
|
0.00 | -9999.00 | 50.5 | 51 |
|
| 196 |
Motif group HL_69752.2
Basepair signature:
|
0.00 | -9999.00 | 49 | 49.5 |
|
| 197 |
Motif group HL_67667.2
Basepair signature:
|
0.00 | -9999.00 | 49.5 | 50 |
|
| 198 |
Motif group HL_66103.1
Basepair signature:
|
0.00 | -9999.00 | 49.5 | 49.5 |
|
| 199 |
Motif group HL_65794.5
Basepair signature:
|
0.00 | -9999.00 | 49.5 | 49.5 |
Pseudoknot geometry |
| 200 |
Motif group HL_65313.1
Basepair signature:
|
0.00 | -9999.00 | 50.5 | 50.5 |
|
| 201 |
Motif group HL_62934.1
Basepair signature:
|
0.00 | -9999.00 | 49.5 | 49.5 |
|
| 202 |
Motif group HL_60914.1
Basepair signature:
|
0.00 | -9999.00 | 51 | 51.5 |
|
| 203 |
Motif group HL_59843.1
Basepair signature:
|
0.00 | -9999.00 | 49.5 | 49.5 |
|
| 204 |
Motif group HL_59735.5
Basepair signature:
|
0.00 | -9999.00 | 49 | 49.5 |
|
| 205 |
Motif group HL_57875.1
Basepair signature:
|
0.00 | -9999.00 | 49 | 49.5 |
|
| 206 |
Motif group HL_57176.2
Basepair signature:
|
0.00 | -9999.00 | 49 | 49.5 |
Pseudoknot geometry with 3' bulge |
| 207 |
Motif group HL_56676.1
Basepair signature:
|
0.00 | -9999.00 | 50 | 50.5 |
|
| 208 |
Motif group HL_56334.1
Basepair signature:
|
0.00 | -9999.00 | 50 | 50.5 |
Mini UNCG |
| 209 |
Motif group HL_56131.2
Basepair signature:
|
0.00 | -9999.00 | 47.5 | 48 |
|
| 210 |
Motif group HL_55195.3
Basepair signature:
|
0.00 | -9999.00 | 50 | 50.5 |
|
| 211 |
Motif group HL_53890.2
Basepair signature:
|
0.00 | -9999.00 | 49 | 49.5 |
|
| 212 |
Motif group HL_52953.3
Basepair signature:
|
0.00 | -9999.00 | 50 | 50.5 |
|
| 213 |
Motif group HL_50537.6
Basepair signature:
|
0.00 | -9999.00 | 47 | 47.5 |
tRNA anticodon loop with synthetase |
| 214 |
Motif group HL_50318.1
Basepair signature:
|
0.00 | -9999.00 | 48 | 48.5 |
|
| 215 |
Motif group HL_50006.2
Basepair signature:
|
0.00 | -9999.00 | 47.5 | 48 |
|
| 216 |
Motif group HL_49922.4
Basepair signature:
|
0.00 | -9999.00 | 49 | 49.5 |
|
| 217 |
Motif group HL_48778.2
Basepair signature:
|
0.00 | -9999.00 | 50 | 50.5 |
Mini UNCG |
| 218 |
Motif group HL_48417.5
Basepair signature:
|
0.00 | -9999.00 | 46 | 46 |
|
| 219 |
Motif group HL_47787.2
Basepair signature:
|
0.00 | -9999.00 | 48 | 48.5 |
|
| 220 |
Motif group HL_46501.1
Basepair signature:
|
0.00 | -9999.00 | 50 | 50.5 |
|
| 221 |
Motif group HL_43517.1
Basepair signature:
|
0.00 | -9999.00 | 49.5 | 49.5 |
|
| 222 |
Motif group HL_41464.2
Basepair signature:
|
0.00 | -9999.00 | 46.5 | 46.5 |
|
| 223 |
Motif group HL_39243.1
Basepair signature:
|
0.00 | -9999.00 | 48 | 48 |
|
| 224 |
Motif group HL_38901.2
Basepair signature:
|
0.00 | -9999.00 | 50 | 50.5 |
tRNA D-loop |
| 225 |
Motif group HL_38168.1
Basepair signature:
|
0.00 | -9999.00 | 49.5 | 50 |
|
| 226 |
Motif group HL_37824.7
Basepair signature:
|
0.00 | -9999.00 | 48 | 48.5 |
GNRA |
| 227 |
Motif group HL_37344.1
Basepair signature:
|
0.00 | -9999.00 | 49 | 49 |
|
| 228 |
Motif group HL_35941.1
Basepair signature:
|
0.00 | -9999.00 | 51.5 | 52 |
|
| 229 |
Motif group HL_34617.5
Basepair signature:
|
0.00 | -9999.00 | 49 | 49.5 |
UNCG |
| 230 |
Motif group HL_32392.1
Basepair signature:
|
0.00 | -9999.00 | 50.5 | 51 |
|
| 231 |
Motif group HL_32346.4
Basepair signature:
|
0.00 | -9999.00 | 50 | 50.5 |
|
| 232 |
Motif group HL_31585.4
Basepair signature:
|
0.00 | -9999.00 | 48 | 48.5 |
Purine riboswitch |
| 233 |
Motif group HL_30680.3
Basepair signature:
|
0.00 | -9999.00 | 47.5 | 48 |
Pseudoknot geometry |
| 234 |
Motif group HL_30068.2
Basepair signature:
|
0.00 | -9999.00 | 48.5 | 49 |
|
| 235 |
Motif group HL_29966.1
Basepair signature:
|
0.00 | -9999.00 | 50 | 50.5 |
|
| 236 |
Motif group HL_28791.1
Basepair signature:
|
0.00 | -9999.00 | 50.5 | 50.5 |
|
| 237 |
Motif group HL_28075.1
Basepair signature:
|
0.00 | -9999.00 | 48 | 48 |
|
| 238 |
Motif group HL_27483.1
Basepair signature:
|
0.00 | -9999.00 | 49 | 49 |
|
| 239 |
Motif group HL_26631.1
Basepair signature:
|
0.00 | -9999.00 | 51 | 51.5 |
|
| 240 |
Motif group HL_22584.6
Basepair signature:
|
0.00 | -9999.00 | 50 | 50 |
Fab BL3-6 binding hairpin with tSW |
| 241 |
Motif group HL_22135.1
Basepair signature:
|
0.00 | -9999.00 | 51.5 | 52 |
|
| 242 |
Motif group HL_20811.4
Basepair signature:
|
0.00 | -9999.00 | 46 | 46 |
tRNA D-loop |
| 243 |
Motif group HL_20535.2
Basepair signature:
|
0.00 | -9999.00 | 48 | 48 |
|
| 244 |
Motif group HL_15574.1
Basepair signature:
|
0.00 | -9999.00 | 48.5 | 48.5 |
|
| 245 |
Motif group HL_13963.3
Basepair signature:
|
0.00 | -9999.00 | 48 | 48 |
|
| 246 |
Motif group HL_13189.1
Basepair signature:
|
0.00 | -9999.00 | 50.5 | 51 |
|
| 247 |
Motif group HL_10540.1
Basepair signature:
|
0.00 | -9999.00 | 48 | 47.5 |
|
| 248 |
Motif group HL_10453.3
Basepair signature:
|
0.00 | -9999.00 | 47.5 | 48 |
tRNA anticodon loop |
| 249 |
Motif group HL_08100.1
Basepair signature:
|
0.00 | -9999.00 | 49 | 49.5 |
|
| 250 |
Motif group HL_07886.3
Basepair signature:
|
0.00 | -9999.00 | 48 | 48.5 |
|
| 251 |
Motif group HL_04783.2
Basepair signature:
|
0.00 | -9999.00 | 47 | 47.5 |
|
| 252 |
Motif group HL_04259.3
Basepair signature:
|
0.00 | -9999.00 | 47.5 | 48 |
GNRA with extra cWW |
| 253 |
Motif group HL_00914.1
Basepair signature:
|
0.00 | -9999.00 | 48.5 | 49 |
|