JAR3D
Query RF03087-3.98 completed
Run on Motif Atlas Version
using the Rfam secondary structure. Run with the CaCoFold secondary structure.
Rfam family RF03087 maps to these 30 chains: 9ISV|1|A, 9J3R|1|A, 9J3R|1|B, 9J3R|1|C, 9J3R|1|D, 9J3T|1|A, 9J3T|1|B, 9J3T|1|C, 9J3T|1|D, 9J3T|1|E, 9J3T|1|F, 9J3T|1|G, 9J3T|1|H, 9MM6|1|A, 9MM6|1|E, 9MM6|1|I, 9MM6|1|M, 9MM6|1|Q, 9MM6|1|U, 9MM6|1|Y, 9MM6|1|c, 9MME|1|U, 9MME|1|Y, 9MME|1|c, 9MME|1|g, 9MME|1|k, 9MME|1|o, 9MME|1|s, 9MME|1|w, 9MMG|1|c See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.
Loop 41 Hairpin loop
Column numbers: 1161-1171 - View nucleotides in PDB file(s)
Scored sequences and counts
GUCGCU----C 102
GUAGCU----C 51
CGA-CG----G 31
GUCGCU----A 18
-UUGCU----A 14
GUCGCA----C 7
-UUGCUA---- 7
-AACGUACAA- 4
GUCGCA----A 4
UGA-CG----G 4
ACCGUACA--U 3
GCCGCU----C 3
GUUGCU----A 3
GGA-CG----C 3
UU-GCU----A 3
CUAGCU----A 2
UUAGCU----A 2
AGA-CG----U 2
GUUGCU----- 2
-GGCA------ 2
GUAGAU----C 1
GUAGCG----C 1
GUAGCU----A 1
GUAGCU----G 1
GUCGCA----G 1
GUCGCC----C 1
GUCGCG----C 1
GUCGCU----G 1
GUUGCU----C 1
UACGCG----G 1
UUCGCU----A 1
U-CGCA----A 1
UUG-CA----A 1
-GGCG------ 1
Omitted sequenced and counts
----------- 9
Click on headings to reorder table
| # | Matching motif group | Acceptance Rate | Mean Cutoff Score | Full Edit Distance | Interior Edit Distance | Basepair Diagram and most common annotation |
|---|---|---|---|---|---|---|
| 1 |
Motif group HL_13529.1
Basepair signature:
|
58.01 | -7.18 | 4 | 2 |
|
| 2 |
Motif group HL_56131.2
Basepair signature:
|
45.91 | -15.36 | 3 | 2 |
|
| 3 |
Motif group HL_20535.2
Basepair signature:
|
38.43 | -16.42 | 3 | 2 |
|
| 4 |
Motif group HL_66103.1
Basepair signature:
|
37.01 | -17.14 | 4 | 2 |
|
| 5 |
Motif group HL_04783.2
Basepair signature:
|
19.93 | -26.52 | 4 | 2 |
|
| 6 |
Motif group HL_99040.1
Basepair signature:
|
19.22 | -48.38 | 4 | 2 |
|
| 7 |
Motif group HL_31585.4
Basepair signature:
|
18.86 | -164.69 | 3 | 2 |
Purine riboswitch |
| 8 |
Motif group HL_81100.2
Basepair signature:
|
18.86 | -407.62 | 4 | 2 |
|
| 9 |
Motif group HL_13963.3
Basepair signature:
|
16.01 | -44.81 | 4 | 3 |
|
| 10 |
Motif group HL_65794.5
Basepair signature:
|
14.95 | -44.90 | 2 | 2 |
Pseudoknot geometry |
| 11 |
Motif group HL_93535.1
Basepair signature:
|
14.95 | -54.78 | 4 | 3 |
|
| 12 |
Motif group HL_37824.7
Basepair signature:
|
14.23 | -68.98 | 3 | 2 |
GNRA |
| 13 |
Motif group HL_13189.1
Basepair signature:
|
13.52 | -62.28 | 5 | 3 |
|
| 14 |
Motif group HL_53890.2
Basepair signature:
|
12.81 | -52.66 | 5 | 3 |
|
| 15 |
Motif group HL_82710.2
Basepair signature:
|
12.81 | -55.18 | 3 | 3 |
|
| 16 |
Motif group HL_28791.1
Basepair signature:
|
12.81 | -77.60 | 4 | 2 |
|
| 17 |
Motif group HL_07886.3
Basepair signature:
|
12.81 | -80.63 | 5 | 3 |
|
| 18 |
Motif group HL_62934.1
Basepair signature:
|
12.81 | -80.86 | 5 | 4 |
|
| 19 |
Motif group HL_57875.1
Basepair signature:
|
12.81 | -86.52 | 4 | 3 |
|
| 20 |
Motif group HL_52953.3
Basepair signature:
|
12.81 | -118.06 | 4 | 3 |
|
| 21 |
Motif group HL_48417.5
Basepair signature:
|
12.10 | -39.33 | 3 | 2 |
|
| 22 |
Motif group HL_34617.5
Basepair signature:
|
11.03 | -92.50 | 3 | 2 |
UNCG |
| 23 |
Motif group HL_50006.2
Basepair signature:
|
8.54 | -25.58 | 4 | 3 |
|
| 24 |
Motif group HL_43517.1
Basepair signature:
|
6.76 | -47.51 | 3 | 3 |
|
| 25 |
Motif group HL_56334.1
Basepair signature:
|
6.76 | -66.49 | 3 | 2 |
Mini UNCG |
| 26 |
Motif group HL_38901.2
Basepair signature:
|
6.41 | -53.89 | 2 | 2 |
tRNA D-loop |
| 27 |
Motif group HL_89199.2
Basepair signature:
|
6.41 | -157.94 | 4 | 2 |
Mini UNCG |
| 28 |
Motif group HL_78347.4
Basepair signature:
|
6.05 | -42.56 | 3 | 3 |
|
| 29 |
Motif group HL_86870.2
Basepair signature:
|
6.05 | -46.52 | 2 | 2 |
|
| 30 |
Motif group HL_48778.2
Basepair signature:
|
6.05 | -68.40 | 2 | 2 |
Mini UNCG |
| 31 |
Motif group HL_56676.1
Basepair signature:
|
6.05 | -78.08 | 5 | 3 |
|
| 32 |
Motif group HL_70782.2
Basepair signature:
|
5.34 | -35.05 | 3 | 3 |
|
| 33 |
Motif group HL_75660.5
Basepair signature:
|
1.78 | -53.48 | 2 | 2 |
|
| 34 |
Motif group HL_59330.1
Basepair signature:
|
1.78 | -1598.39 | 4 | 2 |
|
| 35 |
Motif group HL_69752.2
Basepair signature:
|
1.42 | -47.10 | 4 | 2 |
|
| 36 |
Motif group HL_46501.1
Basepair signature:
|
1.42 | -82.31 | 5 | 3 |
|
| 37 |
Motif group HL_50860.2
Basepair signature:
|
1.07 | -67.79 | 4 | 3 |
|
| 38 |
Motif group HL_18565.1
Basepair signature:
|
1.07 | -90.05 | 6 | 5 |
|
| 39 |
Motif group HL_77082.1
Basepair signature:
|
1.07 | -119.52 | 4 | 4 |
Pseudoknot geometry |
| 40 |
Motif group HL_33983.1
Basepair signature:
|
1.07 | -158.25 | 7 | 5 |
|
| 41 |
Motif group HL_73266.9
Basepair signature:
|
1.07 | -163.25 | 6 | 5 |
|
| 42 |
Motif group HL_38808.1
Basepair signature:
|
1.07 | -169.73 | 5 | 3 |
|
| 43 |
Motif group HL_83632.1
Basepair signature:
|
1.07 | -186.83 | 5 | 4 |
tRNA anticodon loop |
| 44 |
Motif group HL_97733.1
Basepair signature:
|
1.07 | -197.49 | 6 | 5 |
|
| 45 |
Motif group HL_50318.1
Basepair signature:
|
0.71 | -37.88 | 5 | 4 |
|
| 46 |
Motif group HL_20811.4
Basepair signature:
|
0.71 | -80.74 | 5 | 3 |
tRNA D-loop |
| 47 |
Motif group HL_77436.5
Basepair signature:
|
0.71 | -97.03 | 4 | 3 |
T-loop related |
| 48 |
Motif group HL_49922.4
Basepair signature:
|
0.71 | -107.79 | 4 | 4 |
|
| 49 |
Motif group HL_25967.2
Basepair signature:
|
0.71 | -152.73 | 3 | 3 |
|
| 50 |
Motif group HL_30680.3
Basepair signature:
|
0.71 | -2665.27 | 3 | 2 |
Pseudoknot geometry |
| 51 |
Motif group HL_97917.2
Basepair signature:
|
0.36 | -42.26 | 4 | 4 |
|
| 52 |
Motif group HL_39243.1
Basepair signature:
|
0.36 | -43.89 | 3 | 3 |
|
| 53 |
Motif group HL_22584.6
Basepair signature:
|
0.36 | -62.23 | 4 | 2 |
Fab BL3-6 binding hairpin with tSW |
| 54 |
Motif group HL_71391.1
Basepair signature:
|
0.36 | -75.33 | 3 | 3 |
|
| 55 |
Motif group HL_87553.1
Basepair signature:
|
0.36 | -80.67 | 4 | 4 |
|
| 56 |
Motif group HL_22135.1
Basepair signature:
|
0.36 | -132.78 | 4 | 3 |
|
| 57 |
Motif group HL_57176.2
Basepair signature:
|
0.36 | -152.35 | 3 | 2 |
Pseudoknot geometry with 3' bulge |
| 58 |
Motif group HL_27670.2
Basepair signature:
|
0.36 | -155.29 | 3 | 3 |
T-loop with unstacked turn |
| 59 |
Motif group HL_26934.1
Basepair signature:
|
0.00 | -26.19 | 3 | 3 |
|
| 60 |
Motif group HL_83808.4
Basepair signature:
|
0.00 | -40.93 | 5 | 3 |
Pseudoknot |
| 61 |
Motif group HL_50537.6
Basepair signature:
|
0.00 | -45.32 | 5 | 4 |
tRNA anticodon loop with synthetase |
| 62 |
Motif group HL_86012.1
Basepair signature:
|
0.00 | -46.99 | 4 | 3 |
T-loop with unstacked turn |
| 63 |
Motif group HL_89893.1
Basepair signature:
|
0.00 | -53.05 | 6 | 4 |
|
| 64 |
Motif group HL_87954.2
Basepair signature:
|
0.00 | -55.72 | 3 | 2 |
|
| 65 |
Motif group HL_08100.1
Basepair signature:
|
0.00 | -58.48 | 4 | 2 |
|
| 66 |
Motif group HL_38168.1
Basepair signature:
|
0.00 | -61.14 | 4 | 3 |
|
| 67 |
Motif group HL_89567.2
Basepair signature:
|
0.00 | -65.57 | 5 | 3 |
|
| 68 |
Motif group HL_99748.1
Basepair signature:
|
0.00 | -66.23 | 5 | 4 |
Other HL |
| 69 |
Motif group HL_37344.1
Basepair signature:
|
0.00 | -66.79 | 6 | 4 |
|
| 70 |
Motif group HL_20167.2
Basepair signature:
|
0.00 | -69.36 | 3 | 3 |
|
| 71 |
Motif group HL_57863.1
Basepair signature:
|
0.00 | -70.75 | 5 | 5 |
G-quadruplex fragment |
| 72 |
Motif group HL_28252.8
Basepair signature:
|
0.00 | -72.62 | 3 | 2 |
T-loop with 2 stacked bulged bases |
| 73 |
Motif group HL_80922.2
Basepair signature:
|
0.00 | -73.45 | 4 | 4 |
|
| 74 |
Motif group HL_28075.1
Basepair signature:
|
0.00 | -76.40 | 4 | 3 |
|
| 75 |
Motif group HL_86769.4
Basepair signature:
|
0.00 | -78.43 | 4 | 3 |
|
| 76 |
Motif group HL_35941.1
Basepair signature:
|
0.00 | -79.75 | 4 | 2 |
|
| 77 |
Motif group HL_02887.3
Basepair signature:
|
0.00 | -81.86 | 5 | 4 |
T-loop with 3 stacked bulged bases |
| 78 |
Motif group HL_84299.4
Basepair signature:
|
0.00 | -82.27 | 3 | 3 |
|
| 79 |
Motif group HL_04642.1
Basepair signature:
|
0.00 | -82.39 | 5 | 4 |
tRNA D-loop |
| 80 |
Motif group HL_66853.7
Basepair signature:
|
0.00 | -82.63 | 5 | 4 |
|
| 81 |
Motif group HL_32392.1
Basepair signature:
|
0.00 | -83.28 | 5 | 3 |
|
| 82 |
Motif group HL_61996.2
Basepair signature:
|
0.00 | -83.66 | 4 | 3 |
|
| 83 |
Motif group HL_98864.1
Basepair signature:
|
0.00 | -87.29 | 5 | 5 |
T-loop with unstacked turn |
| 84 |
Motif group HL_59843.1
Basepair signature:
|
0.00 | -87.76 | 5 | 4 |
|
| 85 |
Motif group HL_93438.2
Basepair signature:
|
0.00 | -87.99 | 5 | 4 |
|
| 86 |
Motif group HL_01609.3
Basepair signature:
|
0.00 | -88.73 | 3 | 3 |
T-loop with 2 bulged bases not stacked |
| 87 |
Motif group HL_41464.2
Basepair signature:
|
0.00 | -92.66 | 5 | 4 |
|
| 88 |
Motif group HL_47787.2
Basepair signature:
|
0.00 | -98.88 | 4 | 3 |
|
| 89 |
Motif group HL_47854.1
Basepair signature:
|
0.00 | -99.84 | 5 | 5 |
|
| 90 |
Motif group HL_30068.2
Basepair signature:
|
0.00 | -100.77 | 4 | 3 |
|
| 91 |
Motif group HL_41543.1
Basepair signature:
|
0.00 | -100.90 | 5 | 5 |
|
| 92 |
Motif group HL_27483.1
Basepair signature:
|
0.00 | -103.62 | 4 | 3 |
|
| 93 |
Motif group HL_10540.1
Basepair signature:
|
0.00 | -109.29 | 6 | 4 |
|
| 94 |
Motif group HL_81545.2
Basepair signature:
|
0.00 | -109.45 | 4 | 4 |
|
| 95 |
Motif group HL_42046.2
Basepair signature:
|
0.00 | -112.29 | 5 | 4 |
|
| 96 |
Motif group HL_32346.4
Basepair signature:
|
0.00 | -112.40 | 3 | 3 |
|
| 97 |
Motif group HL_45175.1
Basepair signature:
|
0.00 | -112.89 | 5 | 4 |
tRNA D-loop |
| 98 |
Motif group HL_64690.6
Basepair signature:
|
0.00 | -115.20 | 5 | 4 |
|
| 99 |
Motif group HL_81538.2
Basepair signature:
|
0.00 | -116.87 | 2 | 2 |
GNRA with tandem sheared |
| 100 |
Motif group HL_60914.1
Basepair signature:
|
0.00 | -119.60 | 5 | 3 |
|
| 101 |
Motif group HL_21372.1
Basepair signature:
|
0.00 | -119.72 | 5 | 3 |
|
| 102 |
Motif group HL_80008.1
Basepair signature:
|
0.00 | -120.33 | 6 | 4 |
|
| 103 |
Motif group HL_20743.5
Basepair signature:
|
0.00 | -122.18 | 6 | 5 |
|
| 104 |
Motif group HL_68257.1
Basepair signature:
|
0.00 | -123.58 | 7 | 6 |
|
| 105 |
Motif group HL_29129.3
Basepair signature:
|
0.00 | -124.99 | 5 | 5 |
|
| 106 |
Motif group HL_55195.3
Basepair signature:
|
0.00 | -126.05 | 4 | 3 |
|
| 107 |
Motif group HL_85434.1
Basepair signature:
|
0.00 | -126.48 | 5 | 5 |
|
| 108 |
Motif group HL_15802.1
Basepair signature:
|
0.00 | -127.55 | 6 | 4 |
|
| 109 |
Motif group HL_04259.3
Basepair signature:
|
0.00 | -128.73 | 5 | 4 |
GNRA with extra cWW |
| 110 |
Motif group HL_67079.1
Basepair signature:
|
0.00 | -130.12 | 6 | 5 |
|
| 111 |
Motif group HL_78677.1
Basepair signature:
|
0.00 | -133.28 | 4 | 3 |
|
| 112 |
Motif group HL_75293.5
Basepair signature:
|
0.00 | -134.07 | 5 | 5 |
|
| 113 |
Motif group HL_18978.1
Basepair signature:
|
0.00 | -138.15 | 5 | 4 |
|
| 114 |
Motif group HL_04171.7
Basepair signature:
|
0.00 | -138.16 | 7 | 5 |
|
| 115 |
Motif group HL_58224.1
Basepair signature:
|
0.00 | -141.86 | 5 | 4 |
|
| 116 |
Motif group HL_49941.1
Basepair signature:
|
0.00 | -145.43 | 7 | 6 |
tRNA D-loop |
| 117 |
Motif group HL_87463.1
Basepair signature:
|
0.00 | -145.45 | 5 | 5 |
|
| 118 |
Motif group HL_36335.1
Basepair signature:
|
0.00 | -149.33 | 8 | 7 |
|
| 119 |
Motif group HL_98252.1
Basepair signature:
|
0.00 | -149.66 | 9 | 7 |
|
| 120 |
Motif group HL_18423.1
Basepair signature:
|
0.00 | -149.90 | 7 | 6 |
|
| 121 |
Motif group HL_16991.1
Basepair signature:
|
0.00 | -151.19 | 8 | 7 |
G-quadruplex fragment |
| 122 |
Motif group HL_72628.1
Basepair signature:
|
0.00 | -155.51 | 7 | 6 |
|
| 123 |
Motif group HL_25847.2
Basepair signature:
|
0.00 | -157.81 | 6 | 6 |
|
| 124 |
Motif group HL_41902.1
Basepair signature:
|
0.00 | -159.84 | 9 | 8 |
|
| 125 |
Motif group HL_23509.1
Basepair signature:
|
0.00 | -161.05 | 7 | 7 |
|
| 126 |
Motif group HL_04641.1
Basepair signature:
|
0.00 | -164.45 | 7 | 6 |
|
| 127 |
Motif group HL_10453.3
Basepair signature:
|
0.00 | -166.12 | 4 | 3 |
tRNA anticodon loop |
| 128 |
Motif group HL_74379.3
Basepair signature:
|
0.00 | -166.40 | 8 | 8 |
|
| 129 |
Motif group HL_40252.4
Basepair signature:
|
0.00 | -167.33 | 7 | 6 |
|
| 130 |
Motif group HL_67667.2
Basepair signature:
|
0.00 | -167.39 | 4 | 3 |
|
| 131 |
Motif group HL_70658.1
Basepair signature:
|
0.00 | -169.96 | 8 | 8 |
|
| 132 |
Motif group HL_01962.2
Basepair signature:
|
0.00 | -171.81 | 7 | 6 |
|
| 133 |
Motif group HL_89881.5
Basepair signature:
|
0.00 | -172.63 | 5 | 5 |
|
| 134 |
Motif group HL_93616.2
Basepair signature:
|
0.00 | -173.12 | 7 | 6 |
tRNA D-loop |
| 135 |
Motif group HL_60266.1
Basepair signature:
|
0.00 | -174.13 | 8 | 7 |
|
| 136 |
Motif group HL_38046.1
Basepair signature:
|
0.00 | -177.12 | 6 | 5 |
|
| 137 |
Motif group HL_45785.1
Basepair signature:
|
0.00 | -178.65 | 6 | 5 |
|
| 138 |
Motif group HL_25061.1
Basepair signature:
|
0.00 | -181.12 | 6 | 5 |
|
| 139 |
Motif group HL_86109.1
Basepair signature:
|
0.00 | -182.75 | 8 | 8 |
|
| 140 |
Motif group HL_90620.1
Basepair signature:
|
0.00 | -184.45 | 8 | 7 |
|
| 141 |
Motif group HL_06226.4
Basepair signature:
|
0.00 | -185.53 | 5 | 5 |
|
| 142 |
Motif group HL_07583.1
Basepair signature:
|
0.00 | -191.63 | 9 | 7 |
|
| 143 |
Motif group HL_37369.2
Basepair signature:
|
0.00 | -194.59 | 5 | 3 |
|
| 144 |
Motif group HL_00914.1
Basepair signature:
|
0.00 | -195.49 | 5 | 4 |
|
| 145 |
Motif group HL_84847.1
Basepair signature:
|
0.00 | -195.59 | 8 | 7 |
|
| 146 |
Motif group HL_23010.1
Basepair signature:
|
0.00 | -196.85 | 7 | 6 |
|
| 147 |
Motif group HL_74055.2
Basepair signature:
|
0.00 | -198.39 | 9 | 8 |
|
| 148 |
Motif group HL_02483.1
Basepair signature:
|
0.00 | -198.99 | 8 | 7 |
|
| 149 |
Motif group HL_99769.3
Basepair signature:
|
0.00 | -201.43 | 6 | 6 |
|
| 150 |
Motif group HL_13971.1
Basepair signature:
|
0.00 | -202.02 | 8 | 7 |
|
| 151 |
Motif group HL_85367.2
Basepair signature:
|
0.00 | -202.12 | 4 | 3 |
|
| 152 |
Motif group HL_53504.3
Basepair signature:
|
0.00 | -203.67 | 7 | 6 |
|
| 153 |
Motif group HL_15574.1
Basepair signature:
|
0.00 | -205.59 | 4 | 4 |
|
| 154 |
Motif group HL_86883.1
Basepair signature:
|
0.00 | -205.65 | 3 | 3 |
|
| 155 |
Motif group HL_65313.1
Basepair signature:
|
0.00 | -205.84 | 5 | 3 |
|
| 156 |
Motif group HL_06059.6
Basepair signature:
|
0.00 | -206.23 | 4 | 3 |
tRNA anticodon loop |
| 157 |
Motif group HL_80709.3
Basepair signature:
|
0.00 | -208.49 | 4 | 2 |
|
| 158 |
Motif group HL_91939.2
Basepair signature:
|
0.00 | -209.14 | 7 | 6 |
|
| 159 |
Motif group HL_08602.1
Basepair signature:
|
0.00 | -209.16 | 8 | 6 |
|
| 160 |
Motif group HL_29966.1
Basepair signature:
|
0.00 | -210.18 | 6 | 4 |
|
| 161 |
Motif group HL_81205.3
Basepair signature:
|
0.00 | -213.56 | 10 | 9 |
|
| 162 |
Motif group HL_68767.1
Basepair signature:
|
0.00 | -215.79 | 7 | 7 |
tRNA D-loop |
| 163 |
Motif group HL_05304.3
Basepair signature:
|
0.00 | -222.89 | 7 | 7 |
|
| 164 |
Motif group HL_02817.2
Basepair signature:
|
0.00 | -227.52 | 6 | 5 |
|
| 165 |
Motif group HL_73247.1
Basepair signature:
|
0.00 | -229.58 | 10 | 9 |
Pseudoknot geometry |
| 166 |
Motif group HL_78197.1
Basepair signature:
|
0.00 | -243.82 | 4 | 3 |
|
| 167 |
Motif group HL_53454.2
Basepair signature:
|
0.00 | -256.19 | 7 | 6 |
|
| 168 |
Motif group HL_73255.1
Basepair signature:
|
0.00 | -257.13 | 6 | 5 |
|
| 169 |
Motif group HL_11542.1
Basepair signature:
|
0.00 | -265.27 | 9 | 8 |
|
| 170 |
Motif group HL_26631.1
Basepair signature:
|
0.00 | -265.74 | 5 | 3 |
|
| 171 |
Motif group HL_98870.1
Basepair signature:
|
0.00 | -266.46 | 10 | 10 |
|
| 172 |
Motif group HL_07480.2
Basepair signature:
|
0.00 | -268.98 | 7 | 6 |
|
| 173 |
Motif group HL_91641.1
Basepair signature:
|
0.00 | -277.83 | 11 | 10 |
|
| 174 |
Motif group HL_14757.1
Basepair signature:
|
0.00 | -291.31 | 13 | 12 |
|
| 175 |
Motif group HL_93324.4
Basepair signature:
|
0.00 | -296.15 | 3 | 3 |
Pseudoknot geometry |
| 176 |
Motif group HL_02581.1
Basepair signature:
|
0.00 | -297.91 | 10 | 10 |
tRNA D-loop |
| 177 |
Motif group HL_93383.1
Basepair signature:
|
0.00 | -307.33 | 5 | 5 |
|
| 178 |
Motif group HL_34964.1
Basepair signature:
|
0.00 | -334.86 | 6 | 6 |
|
| 179 |
Motif group HL_97756.2
Basepair signature:
|
0.00 | -342.94 | 10 | 9 |
|
| 180 |
Motif group HL_51921.1
Basepair signature:
|
0.00 | -352.83 | 15 | 14 |
|
| 181 |
Motif group HL_92488.1
Basepair signature:
|
0.00 | -436.21 | 10 | 10 |
|
| 182 |
Motif group HL_88205.2
Basepair signature:
|
0.00 | -457.43 | 6 | 5 |
|
| 183 |
Motif group HL_94980.1
Basepair signature:
|
0.00 | -461.32 | 5 | 3 |
|
| 184 |
Motif group HL_76094.1
Basepair signature:
|
0.00 | -507.11 | 5 | 4 |
|
| 185 |
Motif group HL_12870.1
Basepair signature:
|
0.00 | -780.85 | 8 | 8 |
|
| 186 |
Motif group HL_66482.1
Basepair signature:
|
0.00 | -1263.48 | 13 | 12 |
|
| 187 |
Motif group HL_10456.1
Basepair signature:
|
0.00 | -1274.85 | 13 | 12 |
|
| 188 |
Motif group HL_50779.4
Basepair signature:
|
0.00 | -1430.76 | 5 | 5 |
|
| 189 |
Motif group HL_20751.2
Basepair signature:
|
0.00 | -1438.99 | 9 | 8 |
|
| 190 |
Motif group HL_23115.1
Basepair signature:
|
0.00 | -1448.74 | 7 | 6 |
tRNA D-loop |
| 191 |
Motif group HL_80599.2
Basepair signature:
|
0.00 | -1459.06 | 5 | 3 |
|
| 192 |
Motif group HL_80411.1
Basepair signature:
|
0.00 | -1514.81 | 7 | 6 |
tRNA D-loop |
| 193 |
Motif group HL_91503.7
Basepair signature:
|
0.00 | -1519.80 | 6 | 6 |
|
| 194 |
Motif group HL_29762.1
Basepair signature:
|
0.00 | -1539.50 | 7 | 6 |
|
| 195 |
Motif group HL_88558.1
Basepair signature:
|
0.00 | -1554.35 | 8 | 7 |
|
| 196 |
Motif group HL_93135.1
Basepair signature:
|
0.00 | -1587.98 | 7 | 5 |
Pseudoknot |
| 197 |
Motif group HL_32735.2
Basepair signature:
|
0.00 | -1596.97 | 5 | 4 |
|
| 198 |
Motif group HL_69139.1
Basepair signature:
|
0.00 | -1747.31 | 8 | 6 |
|
| 199 |
Motif group HL_35677.3
Basepair signature:
|
0.00 | -1780.67 | 5 | 4 |
|
| 200 |
Motif group HL_80362.1
Basepair signature:
|
0.00 | -1836.21 | 5 | 4 |
|
| 201 |
Motif group HL_80241.1
Basepair signature:
|
0.00 | -2041.49 | 6 | 5 |
|
| 202 |
Motif group HL_51447.1
Basepair signature:
|
0.00 | -2068.14 | 5 | 4 |
|
| 203 |
Motif group HL_85993.1
Basepair signature:
|
0.00 | -2091.84 | 5 | 4 |
|
| 204 |
Motif group HL_22622.1
Basepair signature:
|
0.00 | -2103.34 | 5 | 4 |
|
| 205 |
Motif group HL_09452.1
Basepair signature:
|
0.00 | -2205.64 | 5 | 4 |
|
| 206 |
Motif group HL_59735.5
Basepair signature:
|
0.00 | -2730.00 | 6 | 4 |
|
| 207 |
Motif group HL_33074.4
Basepair signature:
|
0.00 | -3907.16 | 7 | 6 |
U1 small nuclear ribonucleoprotein A binding hairpin |
| 208 |
Motif group HL_89346.1
Basepair signature:
|
0.00 | -3986.44 | 14 | 13 |
|
| 209 |
Motif group HL_99324.1
Basepair signature:
|
0.00 | -4008.57 | 12 | 11 |
|
| 210 |
Motif group HL_85461.1
Basepair signature:
|
0.00 | -4017.76 | 14 | 14 |
|
| 211 |
Motif group HL_60293.1
Basepair signature:
|
0.00 | -4052.34 | 17 | 16 |
G-quadruplex |
| 212 |
Motif group HL_00317.1
Basepair signature:
|
0.00 | -4055.32 | 16 | 15 |
|
| 213 |
Motif group HL_21400.1
Basepair signature:
|
0.00 | -4059.91 | 19 | 18 |
G-quadruplex |
| 214 |
Motif group HL_35354.1
Basepair signature:
|
0.00 | -4072.64 | 20 | 19 |
|
| 215 |
Motif group HL_59564.1
Basepair signature:
|
0.00 | -4091.79 | 16 | 15 |
|
| 216 |
Motif group HL_12758.3
Basepair signature:
|
0.00 | -4102.50 | 20 | 20 |
G-quadruplex |
| 217 |
Motif group HL_08510.1
Basepair signature:
|
0.00 | -4296.42 | 5 | 3 |
|
| 218 |
Motif group HL_50851.1
Basepair signature:
|
0.00 | -4326.65 | 8 | 7 |
G-quadruplex fragment |
| 219 |
Motif group HL_38649.1
Basepair signature:
|
0.00 | -4405.93 | 5 | 5 |
|
| 220 |
Motif group HL_55436.1
Basepair signature:
|
0.00 | -4620.62 | 5 | 5 |
|
| 221 |
Motif group HL_73916.1
Basepair signature:
|
0.00 | -4641.33 | 33 | 33 |
|
| 222 |
Motif group HL_04725.1
Basepair signature:
|
0.00 | -4642.28 | 6 | 6 |
|
| 223 |
Motif group HL_07903.1
Basepair signature:
|
0.00 | -4819.81 | 8 | 8 |
|
| 224 |
Motif group HL_31581.6
Basepair signature:
|
0.00 | -4845.60 | 7 | 6 |
|
| 225 |
Motif group HL_63355.1
Basepair signature:
|
0.00 | -4904.83 | 9 | 8 |
|
| 226 |
Motif group HL_73183.1
Basepair signature:
|
0.00 | -4964.61 | 10 | 10 |
Pseudoknot geometry with G-bulge |
| 227 |
Motif group HL_67407.5
Basepair signature:
|
0.00 | -5006.31 | 5 | 5 |
|
| 228 |
Motif group HL_88364.2
Basepair signature:
|
0.00 | -5034.23 | 10 | 10 |
|
| 229 |
Motif group HL_15118.1
Basepair signature:
|
0.00 | -5182.77 | 7 | 6 |
|
| 230 |
Motif group HL_81312.1
Basepair signature:
|
0.00 | -5257.35 | 9 | 8 |
|
| 231 |
Motif group HL_94376.1
Basepair signature:
|
0.00 | -5266.98 | 6 | 6 |
Pseudoknot geometry |
| 232 |
Motif group HL_19210.3
Basepair signature:
|
0.00 | -5267.25 | 5 | 4 |
|
| 233 |
Motif group HL_70751.1
Basepair signature:
|
0.00 | -5403.85 | 8 | 6 |
|
| 234 |
Motif group HL_55305.1
Basepair signature:
|
0.00 | -5414.80 | 8 | 7 |
|
| 235 |
Motif group HL_36684.4
Basepair signature:
|
0.00 | -5540.36 | 5 | 4 |
|
| 236 |
Motif group HL_01255.1
Basepair signature:
|
0.00 | -5562.52 | 9 | 7 |
|
| 237 |
Motif group HL_50418.1
Basepair signature:
|
0.00 | -5674.65 | 6 | 6 |
|
| 238 |
Motif group HL_24792.1
Basepair signature:
|
0.00 | -5683.17 | 6 | 5 |
|
| 239 |
Motif group HL_78284.1
Basepair signature:
|
0.00 | -5727.04 | 8 | 6 |
|
| 240 |
Motif group HL_16398.2
Basepair signature:
|
0.00 | -5779.02 | 8 | 8 |
|
| 241 |
Motif group HL_42998.2
Basepair signature:
|
0.00 | -5859.31 | 5 | 4 |
|
| 242 |
Motif group HL_68572.1
Basepair signature:
|
0.00 | -5911.19 | 9 | 7 |
|
| 243 |
Motif group HL_47732.1
Basepair signature:
|
0.00 | -5987.26 | 9 | 8 |
|
| 244 |
Motif group HL_64292.1
Basepair signature:
|
0.00 | -6043.12 | 11 | 10 |
|
| 245 |
Motif group HL_74292.1
Basepair signature:
|
0.00 | -6087.05 | 7 | 7 |
|
| 246 |
Motif group HL_29958.1
Basepair signature:
|
0.00 | -6196.76 | 9 | 8 |
|
| 247 |
Motif group HL_99867.1
Basepair signature:
|
0.00 | -6725.81 | 4 | 4 |
|
| 248 |
Motif group HL_20781.1
Basepair signature:
|
0.00 | -7203.73 | 9 | 7 |
|
| 249 |
Motif group HL_58539.1
Basepair signature:
|
0.00 | -8190.11 | 12 | 10 |
|
| 250 |
Motif group HL_97983.1
Basepair signature:
|
0.00 | -8326.22 | 7 | 5 |
|
| 251 |
Motif group HL_77600.2
Basepair signature:
|
0.00 | -9615.51 | 4 | 4 |
|
| 252 |
Motif group HL_07951.3
Basepair signature:
|
0.00 | -9999.00 | 6 | 5 |
tRNA D-loop |
| 253 |
Motif group HL_09260.2
Basepair signature:
|
0.00 | -9999.00 | 7 | 7 |
tRNA D-loop |