JAR3D on RF03087

Rfam family RF03087 maps to these 30 chains: 9ISV|1|A, 9J3R|1|A, 9J3R|1|B, 9J3R|1|C, 9J3R|1|D, 9J3T|1|A, 9J3T|1|B, 9J3T|1|C, 9J3T|1|D, 9J3T|1|E, 9J3T|1|F, 9J3T|1|G, 9J3T|1|H, 9MM6|1|A, 9MM6|1|E, 9MM6|1|I, 9MM6|1|M, 9MM6|1|Q, 9MM6|1|U, 9MM6|1|Y, 9MM6|1|c, 9MME|1|U, 9MME|1|Y, 9MME|1|c, 9MME|1|g, 9MME|1|k, 9MME|1|o, 9MME|1|s, 9MME|1|w, 9MMG|1|c See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 32 Hairpin loop

Column numbers: 991-1018 - View nucleotides in PDB file(s)

    Scored sequences and counts

    
    G-------UA-A--CCAGU-------CG   30

    
    G-------UA----UCAAU-------CC   21

    
    G-------UA-A--UCAAU-------CC   19

    
    G-------UG----AAAUU-------CC   12

    
    G-------UA----UCAAU-------CU    8

    
    G-------UA-A----AGU-------CC    7

    
    G-------UA-A--CCAUU-------CC    6

    
    G-------UA-A--ACAAU-------CC    5

    
    G-------UA-A--GCAAU-------CC    5

    
    C-------UG----CUAGU-------GU    5

    
    GU------UA-AAUUCGCU------CCC    4

    
    G-------UA-AAGGUAAU-------CC    4

    
    G-------UA-A--GCAUU-------CC    4

    
    G-------UA-A--UCAAC-------CC    4

    
    G-------UA-A--UCAGU-------CC    4

    
    G-------UA----UUAUU-------CC    4

    
    G-------UU----UCAAG-------CC    4

    
    G-------UA-A----AAU-------CC    4

    
    G-------UA-A----AUU-------CC    4

    
    G-------UAGC--AAAAU-------CU    3

    
    A-------UA-A--CCAAU-------UC    3

    
    G-------UA-A--ACAGU-------CU    3

    
    G-------UA-A--CCAAU-------CC    3

    
    G-------UA-A--CCAAU-------CU    3

    
    G-------UA-A--UCAUU-------CC    3

    
    G-------UA-G--CCAAU-------CC    3

    
    G-------UA-G--CCAUU-------CC    3

    
    G-------UA----UCAUU-------CC    3

    
    G-------UACAAAAUAAU-------CC    2

    
    AG------GA-A--AAGAU------CUA    2

    
    A-------UA-A--CCAAU-------UA    2

    
    A-------UA-A--CCACU-------UC    2

    
    G-------CA-A--UCAAU-------CC    2

    
    G-------GA-A--CCUAU-------CC    2

    
    G-------UA-A--CCAAU-------CG    2

    
    G-------UA-A--CCAGU-------CC    2

    
    G-------UA-A--UCAGU-------CG    2

    
    G-------UA-A--UCAUU-------CU    2

    
    G-------UA-G--AAAGU-------CC    2

    
    G-------UA-G--UCAAU-------CC    2

    
    C-------UG----CCAAU-------GA    2

    
    C-------UG----CUGGU-------GC    2

    
    G-------CA----UCAAU-------CC    2

    
    G-------CA----UUAAU-------CU    2

    
    G-------UG----AAGUU-------CC    2

    
    G-------UG----AUAUU-------CC    2

    
    G----------A--UAAAU-------CC    2

    
    G-------UAAA-----UC-------CC    2

    
    AAUACAAAUACA--AUCUA-UUUGAUUC    1

    
    G-------UAAAAAUUAAUU------CC    1

    
    GA------UAAU-CUAAAC------UCC    1

    
    G-------UAUGAAAAAUC-------CC    1

    
    G-----UAUAAA--AGAAU-------CC    1

    
    GA------UAAU--CGAGU------UCU    1

    
    GA------UAAU--UAAAU------UCU    1

    
    GA------UUAU--GCAAG------UCU    1

    
    GG------UAAU--UUAGU------CCU    1

    
    AG------GA-A--AAGGU------CUA    1

    
    G-------UA-AAAAGAAU-------CU    1

    
    G-------UA-AUCUGAGU-------CC    1

    
    G-------UAAU-UCCAAU-------CC    1

    
    G-------UAGA-AAGAGC-------CC    1

    
    GC------CA-G--UAGAG------CUA    1

    
    GG------UA-G--ACAUU------CCC    1

    
    CG------UG-A--CCAAU------C-C    1

    
    G-------UACA--UGAAU-------CC    1

    
    G-------UAGA--CGAAU-------CU    1

    
    A-------AA-A--CCAAU-------UG    1

    
    A-------UA-A--UCAAU-------UU    1

    
    G-------AA-A--CUAAU-------CC    1

    
    G-------CA-A--CCAAU-------CC    1

    
    G-------CA-C--UAAAU-------CU    1

    
    G-------UA-A--ACAAC-------CC    1

    
    G-------UA-A--ACAGU-------CG    1

    
    G-------UA-A--CCAUC-------CC    1

    
    G-------UA-A--CCAUU-------CG    1

    
    G-------UA-A--GCAGU-------CC    1

    
    G-------UA-A--UCAAU-------CU    1

    
    G-------UA-A--UCAGC-------CC    1

    
    G-------UA-A--UGAAU-------CC    1

    
    G-------UA-C--UCAAU-------CC    1

    
    G-------UA-C--UCAUU-------CC    1

    
    G-------UA-G--ACAAU-------CC    1

    
    G-------UA-G--ACAAU-------CU    1

    
    G-------UA-G--UAAAU-------CC    1

    
    G-------UA-G--UCAAU-------CU    1

    
    G-------UA-G--UCAUU-------CC    1

    
    G-------UA-G--UCAUU-------CU    1

    
    G-------UA-G--UUAGC-------CC    1

    
    G-------UC-G--CCAAG-------CC    1

    
    G-------UC-G--CCGAG-------CC    1

    
    G-------UC-G--CCGUG-------UC    1

    
    G-------UC-G--UCGAG-------CC    1

    
    G-------UG-A--AGAAU-------CU    1

    
    G-------UU-G--CCAUG-------CC    1

    
    G-------UU-U--ACAAU-------CU    1

    
    A-------GA-G--A-GAU-------UU    1

    
    C-------GA----AAGAU-------GU    1

    
    C-------GA----AGGAU-------GU    1

    
    C-------GA----GAGAU-------GU    1

    
    G-------CA----UCAAU-------CU    1

    
    G-------UA----CCAAU-------CC    1

    
    G-------UA----GCAAU-------CC    1

    
    G-------UA----UCAAC-------CC    1

    
    G-------UA----UUAGU-------CC    1

    
    G-------UA----UUGAU-------CA    1

    
    G-------UC----ACAAU-------CC    1

    
    G-------UC----ACAGU-------CC    1

    
    G-------UG----ACAUU-------CC    1

    
    G-------UU----CUAAU-------CU    1

    
    G-------UU----UCGUU-------CC    1

    
    U-------UA----GCAGU-------AG    1

    
    U-------UG----UUGAU-------AC    1

    
    C-------CA-----UCGC-------GA    1

    
    G-------UA-A----AUC-------CC    1

    
    G-------UG-A----AAU-------CC    1

    
    --------GACA---------------C    1

Click on headings to reorder table

#	Matching motif group	Acceptance Rate	Mean Cutoff Score	Full Edit Distance	Interior Edit Distance	Basepair Diagram and most common annotation
1	Motif group HL_67079.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F	29.31	-33.25	5	5
2	Motif group HL_68257.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	24.83	-31.37	6	4
3	Motif group HL_02887.3 View motif instance in 3D Basepair signature: cWW-tWH-F-F-F-F-F-F	22.41	-54.68	5	4	T-loop with 3 stacked bulged bases
4	Motif group HL_98864.1 View motif instance in 3D Basepair signature: cWW-tWH-F-F-F-F-F-F	19.31	-54.40	4	4	T-loop with unstacked turn
5	Motif group HL_25847.2 View motif instance in 3D Basepair signature: cWW-F-cSH-tHW-F-F-F	13.79	-82.67	5	4
6	Motif group HL_86012.1 View motif instance in 3D Basepair signature: cWW-tWH-F-F-F-F	11.72	-76.69	4	4	T-loop with unstacked turn
7	Motif group HL_77600.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	11.72	-311.14	3	3
8	Motif group HL_18423.1 View motif instance in 3D Basepair signature: cWW-tSH-tHS-F	11.03	-67.13	6	5
9	Motif group HL_88558.1 View motif instance in 3D Basepair signature: cWW-tSH-F-F-F-F-F-F-F	10.69	-98.62	7	5
10	Motif group HL_61996.2 View motif instance in 3D Basepair signature: cWW-tWH-F-F-F	10.34	-90.59	4	4
11	Motif group HL_01962.2 View motif instance in 3D Basepair signature: cWW-tWH-tWH-F	6.90	-84.05	6	4
12	Motif group HL_04171.7 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F-F-F-F	6.21	-99.54	7	5
13	Motif group HL_01609.3 View motif instance in 3D Basepair signature: cWW-tWH-F-F-F	4.48	-164.92	3	3	T-loop with 2 bulged bases not stacked
14	Motif group HL_50418.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F	4.48	-1792.17	5	5
15	Motif group HL_81545.2 View motif instance in 3D Basepair signature: cWW-tWH-F-F-F-F	2.41	-88.48	4	4
16	Motif group HL_38046.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	2.41	-137.65	6	4
17	Motif group HL_50779.4 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F	2.07	-207.40	5	5
18	Motif group HL_39243.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	2.07	-729.56	4	4
19	Motif group HL_98252.1 View motif instance in 3D Basepair signature: cWW-tWW-F-F-F-F	1.72	-68.96	7	5
20	Motif group HL_27670.2 View motif instance in 3D Basepair signature: cWW-tWH-F-F	1.72	-149.25	3	3	T-loop with unstacked turn
21	Motif group HL_91939.2 View motif instance in 3D Basepair signature: cWW-tSH-tHH-tWW-F-F-F	1.38	-57.51	6	4
22	Motif group HL_93438.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	1.38	-85.23	6	5
23	Motif group HL_19210.3 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	1.38	-91.16	4	4
24	Motif group HL_07480.2 View motif instance in 3D Basepair signature: cWW-tSH-F-F-F	1.38	-91.76	8	6
25	Motif group HL_55436.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	1.38	-130.69	6	5
26	Motif group HL_97917.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F	1.38	-202.07	6	4
27	Motif group HL_29762.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	1.03	-86.71	7	5
28	Motif group HL_18978.1 View motif instance in 3D Basepair signature: cWW-F-F-tHW-F-F-F	0.69	-91.78	8	6
29	Motif group HL_73255.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.69	-92.69	6	4
30	Motif group HL_75293.5 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	0.69	-108.97	5	5
31	Motif group HL_49941.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.69	-112.28	8	6	tRNA D-loop
32	Motif group HL_94376.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F	0.69	-113.43	6	6	Pseudoknot geometry
33	Motif group HL_38649.1 View motif instance in 3D Basepair signature: cWW-tSH-F-F-F-F-F-F	0.69	-115.12	5	5
34	Motif group HL_69139.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	0.69	-118.98	7	6
35	Motif group HL_84299.4 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.69	-170.95	5	5
36	Motif group HL_77436.5 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.69	-171.15	4	4	T-loop related
37	Motif group HL_20535.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.69	-192.42	5	5
38	Motif group HL_06226.4 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F	0.34	-74.86	5	5
39	Motif group HL_45785.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-cSH-F-F	0.34	-76.45	6	6
40	Motif group HL_05304.3 View motif instance in 3D Basepair signature: cWW-cWW-F-F-tSH-F-F-F-F-F	0.34	-77.71	6	6
41	Motif group HL_04725.1 View motif instance in 3D Basepair signature: cWW-cWS-cWW-cWW-cWS	0.34	-83.08	5	5
42	Motif group HL_23010.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.34	-88.61	8	6
43	Motif group HL_99769.3 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F-F	0.34	-100.71	6	5
44	Motif group HL_34964.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.34	-102.15	6	6
45	Motif group HL_58224.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.34	-103.77	7	5
46	Motif group HL_20167.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.34	-109.58	4	4
47	Motif group HL_28252.8 View motif instance in 3D Basepair signature: cWW-tWH-F-F-F-F-F	0.34	-139.61	4	3	T-loop with 2 stacked bulged bases
48	Motif group HL_50006.2 View motif instance in 3D Basepair signature: cWW-F-F	0.34	-248.80	5	5
49	Motif group HL_48417.5 View motif instance in 3D Basepair signature: cWW-F-F	0.34	-260.30	5	4
50	Motif group HL_04783.2 View motif instance in 3D Basepair signature: cWW-F-F-F	0.34	-271.33	5	5
51	Motif group HL_56131.2 View motif instance in 3D Basepair signature: cWW-F-F	0.34	-297.72	6	5
52	Motif group HL_53890.2 View motif instance in 3D Basepair signature: cWW-F-F-F	0.34	-335.86	6	5
53	Motif group HL_37824.7 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.34	-421.89	4	4	GNRA
54	Motif group HL_74292.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	0.34	-705.03	6	6
55	Motif group HL_82710.2 View motif instance in 3D Basepair signature: cWW-F-F-F	0.34	-883.78	5	5
56	Motif group HL_13189.1 View motif instance in 3D Basepair signature: cWW-F-F	0.34	-892.21	7	7
57	Motif group HL_38901.2 View motif instance in 3D Basepair signature: cWW-F-cSH	0.34	-1408.11	6	6	tRNA D-loop
58	Motif group HL_38168.1 View motif instance in 3D Basepair signature: cWW-F	0.34	-1503.28	7	5
59	Motif group HL_70782.2 View motif instance in 3D Basepair signature: cWW-F	0.34	-1508.40	6	5
60	Motif group HL_75660.5 View motif instance in 3D Basepair signature: cWW-F	0.34	-1592.74	6	5
61	Motif group HL_80709.3 View motif instance in 3D Basepair signature: cWW-F-F-F	0.34	-6767.97	6	5
62	Motif group HL_22135.1 View motif instance in 3D Basepair signature: cWW-F-F	0.34	-9841.30	7	6
63	Motif group HL_70658.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F	0.00	-68.13	6	5
64	Motif group HL_74379.3 View motif instance in 3D Basepair signature: cWW-F-F-cSS-cSS-F-F-F	0.00	-70.55	6	6
65	Motif group HL_23509.1 View motif instance in 3D Basepair signature: cSH-F-F-F-F-F-F-F-F-F	0.00	-70.63	6	6
66	Motif group HL_07583.1 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F	0.00	-76.70	8	6
67	Motif group HL_89881.5 View motif instance in 3D Basepair signature: cWW-tHW-F-F-F-F-F-F	0.00	-79.87	6	5
68	Motif group HL_41543.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	0.00	-82.43	6	6
69	Motif group HL_40252.4 View motif instance in 3D Basepair signature: cWW-tSH-cWS-F	0.00	-84.10	7	6
70	Motif group HL_53504.3 View motif instance in 3D Basepair signature: cWW-tSH-F-F-F-F-F-F	0.00	-85.61	6	5.5
71	Motif group HL_60266.1 View motif instance in 3D Basepair signature: cWW-cWW-tWH-F-F-F-F	0.00	-88.48	6	6
72	Motif group HL_83808.4 View motif instance in 3D Basepair signature: cWW-tWW-F-F-F	0.00	-91.15	7	5	Pseudoknot
73	Motif group HL_04641.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-91.33	7	5
74	Motif group HL_04642.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-91.49	7	5	tRNA D-loop
75	Motif group HL_08602.1 View motif instance in 3D Basepair signature: cWW-cSS-F-cSS-F-F-F-F-F	0.00	-94.37	8	6
76	Motif group HL_90620.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-cSW-cSH-F	0.00	-94.69	8	7
77	Motif group HL_93135.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.00	-95.41	7	5.5	Pseudoknot
78	Motif group HL_36335.1 View motif instance in 3D Basepair signature: cWW-F-F-cSS-cSS-F	0.00	-97.94	7	5
79	Motif group HL_15118.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F	0.00	-100.60	7	5
80	Motif group HL_87463.1 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F-F-F	0.00	-101.64	6	6
81	Motif group HL_02483.1 View motif instance in 3D Basepair signature: cWW-tWH-F-cSH-F-F-F	0.00	-101.86	7	6
82	Motif group HL_55305.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-103.49	7	6
83	Motif group HL_84847.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-tWW-F-F-F-F-F-F	0.00	-103.74	6	6
84	Motif group HL_57863.1 View motif instance in 3D Basepair signature: cWW-F-F-cWH-cWH-F	0.00	-104.03	6	6	G-quadruplex fragment
85	Motif group HL_31581.6 View motif instance in 3D Basepair signature: cWW-cHS-F-F-F-cWW-F-F-F	0.00	-107.66	6	5
86	Motif group HL_16991.1 View motif instance in 3D Basepair signature: cWW-cWH-cWH-F-cWH-F	0.00	-108.41	8	7	G-quadruplex fragment
87	Motif group HL_67407.5 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	0.00	-110.32	5	5
88	Motif group HL_41902.1 View motif instance in 3D Basepair signature: cWW-cWW-cWH-F-F-F-F-F	0.00	-111.11	9	8
89	Motif group HL_53454.2 View motif instance in 3D Basepair signature: cWW-tSH-F-F-F-F-F	0.00	-112.90	7	6
90	Motif group HL_86109.1 View motif instance in 3D Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F	0.00	-113.69	7	7
91	Motif group HL_80411.1 View motif instance in 3D Basepair signature: cWW-F-cSH-F-F-F-F	0.00	-115.21	9	7	tRNA D-loop
92	Motif group HL_33074.4 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	0.00	-115.37	7	5	U1 small nuclear ribonucleoprotein A binding hairpin
93	Motif group HL_66853.7 View motif instance in 3D Basepair signature: cWW-cWS-F-cSH	0.00	-119.23	7	5
94	Motif group HL_91503.7 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F	0.00	-120.62	7	6
95	Motif group HL_85434.1 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F-F-F-F	0.00	-122.34	6	6
96	Motif group HL_23115.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-123.31	8	7	tRNA D-loop
97	Motif group HL_81312.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F	0.00	-124.22	8	6
98	Motif group HL_16398.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.00	-128.15	7	6
99	Motif group HL_80599.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F	0.00	-128.32	7	5
100	Motif group HL_25061.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.00	-130.25	7	6
101	Motif group HL_01255.1 View motif instance in 3D Basepair signature: F-F-F-F-F-F-F-F	0.00	-132.14	8	6
102	Motif group HL_38808.1 View motif instance in 3D Basepair signature: cWW-cWW	0.00	-133.08	6	4
103	Motif group HL_35677.3 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F	0.00	-133.30	6	5
104	Motif group HL_74055.2 View motif instance in 3D Basepair signature: cWW-tWH-cWH-tSH-tHW-tHW-tSW	0.00	-135.93	8	7
105	Motif group HL_93616.2 View motif instance in 3D Basepair signature: cWW-cWS-F-F-F-F	0.00	-137.27	8	6	tRNA D-loop
106	Motif group HL_50851.1 View motif instance in 3D Basepair signature: cWW-cWH-cWH-cWH-cWH-F	0.00	-137.80	8	8	G-quadruplex fragment
107	Motif group HL_45175.1 View motif instance in 3D Basepair signature: cWW-cWS-F-F	0.00	-140.60	6	5	tRNA D-loop
108	Motif group HL_97733.1 View motif instance in 3D Basepair signature: cWW-F-F-F-cSH-F	0.00	-143.04	9	7
109	Motif group HL_81205.3 View motif instance in 3D Basepair signature: cWW-cWW-tWH-F-tWH-F-F-F-F-F	0.00	-145.53	9	8
110	Motif group HL_29129.3 View motif instance in 3D Basepair signature: cWW-tWH-F-F-F-F	0.00	-145.65	6	6
111	Motif group HL_20751.2 View motif instance in 3D Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F	0.00	-147.19	8	7
112	Motif group HL_68767.1 View motif instance in 3D Basepair signature: cWW-cWS-tSH-cWS-F	0.00	-147.63	7	7	tRNA D-loop
113	Motif group HL_07903.1 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F	0.00	-147.79	7	6
114	Motif group HL_64690.6 View motif instance in 3D Basepair signature: cWW-cSW-F-F-F-F	0.00	-148.90	4	4
115	Motif group HL_88205.2 View motif instance in 3D Basepair signature: cWW-cWS-tSW-F-F	0.00	-151.25	5	5
116	Motif group HL_33983.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-155.07	7	6
117	Motif group HL_15802.1 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F	0.00	-159.37	8	7
118	Motif group HL_18565.1 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F-F	0.00	-159.67	7	6
119	Motif group HL_11542.1 View motif instance in 3D Basepair signature: cWW-tSH-F-F-F-F-F-F	0.00	-160.22	10	8
120	Motif group HL_98870.1 View motif instance in 3D Basepair signature: cWW-tSH-tWW-F-F-F-F-F	0.00	-160.37	9	8
121	Motif group HL_32735.2 View motif instance in 3D Basepair signature: cWW-tSH-F-F-F-F-F	0.00	-161.08	6	5
122	Motif group HL_20781.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	0.00	-163.07	8	6
123	Motif group HL_50860.2 View motif instance in 3D Basepair signature: cWW-F-cWH-F-F-F-F	0.00	-163.22	6	6
124	Motif group HL_63355.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F	0.00	-165.57	7	7
125	Motif group HL_20743.5 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F-F	0.00	-165.59	6	5
126	Motif group HL_02581.1 View motif instance in 3D Basepair signature: cWW-tSH-cWS-tSW-F-F-F	0.00	-166.16	10	9	tRNA D-loop
127	Motif group HL_47732.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.00	-167.40	8	7
128	Motif group HL_73247.1 View motif instance in 3D Basepair signature: cWW-F-tWH-F-F-F-F-F-F-F-F-F-F	0.00	-167.82	10	8	Pseudoknot geometry
129	Motif group HL_26934.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.00	-168.58	5	5
130	Motif group HL_80008.1 View motif instance in 3D Basepair signature: cWW-F-F-F-cSH-F	0.00	-173.76	7	5
131	Motif group HL_41464.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-179.60	5	5
132	Motif group HL_13971.1 View motif instance in 3D Basepair signature: cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F	0.00	-180.14	8	6
133	Motif group HL_72628.1 View motif instance in 3D Basepair signature: cWW-tSH-F-F-F-F	0.00	-183.04	7	5
134	Motif group HL_89346.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F	0.00	-185.75	12	11
135	Motif group HL_91641.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-cSW-F-F-F-F	0.00	-185.91	10	10
136	Motif group HL_50537.6 View motif instance in 3D Basepair signature: cWW-F-F-F	0.00	-190.40	6	5	tRNA anticodon loop with synthetase
137	Motif group HL_86769.4 View motif instance in 3D Basepair signature: cWW-cWW-cSH-F	0.00	-191.17	6	5
138	Motif group HL_73183.1 View motif instance in 3D Basepair signature: cWW-tSH-tHW-F-F-F-F-F-F-F-F-F	0.00	-193.96	9	8	Pseudoknot geometry with G-bulge
139	Motif group HL_77082.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.00	-195.17	5	4	Pseudoknot geometry
140	Motif group HL_06059.6 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F	0.00	-196.61	5	4	tRNA anticodon loop
141	Motif group HL_21372.1 View motif instance in 3D Basepair signature: cWW-F-cSH-F-F	0.00	-197.40	7	5
142	Motif group HL_73266.9 View motif instance in 3D Basepair signature: cWW-F-F-cSW-cSH-F	0.00	-199.45	6	5
143	Motif group HL_13529.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.00	-201.94	5	4
144	Motif group HL_85367.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.00	-205.68	6	4
145	Motif group HL_83632.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.00	-205.70	6	5	tRNA anticodon loop
146	Motif group HL_10453.3 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-216.57	4	4	tRNA anticodon loop
147	Motif group HL_87553.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-217.46	6	5
148	Motif group HL_29958.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	0.00	-229.63	10	9
149	Motif group HL_10456.1 View motif instance in 3D Basepair signature: cWW-F-cWW-tWW-F-tHW-F-F-F-F-F-F-F	0.00	-230.19	11	10
150	Motif group HL_28075.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-231.35	6	5
151	Motif group HL_81538.2 View motif instance in 3D Basepair signature: cWW-tSH-F-F-F-F	0.00	-233.91	4	4	GNRA with tandem sheared
152	Motif group HL_25967.2 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F	0.00	-234.44	5	5
153	Motif group HL_14757.1 View motif instance in 3D Basepair signature: cWW-cWW-F-F-tSW-tWW-cWW-tHW-tSW-F-cWH-F	0.00	-236.37	11	10
154	Motif group HL_20811.4 View motif instance in 3D Basepair signature: cWW-cWS-F	0.00	-239.10	6	5	tRNA D-loop
155	Motif group HL_64292.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	0.00	-239.35	9	9
156	Motif group HL_78197.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.00	-241.97	5	4
157	Motif group HL_78347.4 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.00	-245.42	6	5
158	Motif group HL_80922.2 View motif instance in 3D Basepair signature: cWW-tSH-F	0.00	-253.50	5	5
159	Motif group HL_51921.1 View motif instance in 3D Basepair signature: cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F	0.00	-261.33	12	12
160	Motif group HL_92488.1 View motif instance in 3D Basepair signature: cWW-cWW-F-cSS-F-F-F-F-F-F	0.00	-262.35	9	9
161	Motif group HL_93324.4 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.00	-263.01	5	4	Pseudoknot geometry
162	Motif group HL_89567.2 View motif instance in 3D Basepair signature: cWW-F-F-F	0.00	-268.19	6	5
163	Motif group HL_24792.1 View motif instance in 3D Basepair signature: cWW-cWS-F-F-F	0.00	-268.40	7	7
164	Motif group HL_10540.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-269.66	7	6
165	Motif group HL_04259.3 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.00	-277.99	5	4	GNRA with extra cWW
166	Motif group HL_66482.1 View motif instance in 3D Basepair signature: cWW-cWW-tWW-F-F-tWH-F-F-F-F-F-F-F-F	0.00	-287.17	12	10
167	Motif group HL_30068.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.00	-292.92	4	4
168	Motif group HL_37344.1 View motif instance in 3D Basepair signature: cWW-F-F	0.00	-296.36	7	6
169	Motif group HL_31585.4 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-304.52	5	5	Purine riboswitch
170	Motif group HL_13963.3 View motif instance in 3D Basepair signature: cWW-F-F	0.00	-305.60	6	6
171	Motif group HL_37369.2 View motif instance in 3D Basepair signature: cWW-tSH-F-F-F	0.00	-307.68	7	5
172	Motif group HL_97756.2 View motif instance in 3D Basepair signature: cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F	0.00	-317.98	9	8
173	Motif group HL_42046.2 View motif instance in 3D Basepair signature: cWW-tSS-F-F-F	0.00	-324.06	7	6
174	Motif group HL_86870.2 View motif instance in 3D Basepair signature: cWW-F-F-F	0.00	-325.32	6	5
175	Motif group HL_07886.3 View motif instance in 3D Basepair signature: cWW-F-F-F	0.00	-339.14	6	6
176	Motif group HL_87954.2 View motif instance in 3D Basepair signature: cWW-tSW-F	0.00	-343.91	5	5
177	Motif group HL_49922.4 View motif instance in 3D Basepair signature: cWW-F-F-F	0.00	-346.33	4	4
178	Motif group HL_62934.1 View motif instance in 3D Basepair signature: cWW-tSH-F	0.00	-348.56	7	5
179	Motif group HL_47787.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.00	-357.19	6	5
180	Motif group HL_99748.1 View motif instance in 3D Basepair signature: cWW-F-F-cSH	0.00	-358.74	7	6	Other HL
181	Motif group HL_08100.1 View motif instance in 3D Basepair signature: cWW-F-F-F	0.00	-363.79	7	5
182	Motif group HL_93535.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.00	-364.02	6	5
183	Motif group HL_22584.6 View motif instance in 3D Basepair signature: cWW-tSW-F	0.00	-365.32	5	5	Fab BL3-6 binding hairpin with tSW
184	Motif group HL_47854.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.00	-366.29	5	5
185	Motif group HL_59843.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.00	-369.87	6	5
186	Motif group HL_02817.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.00	-405.08	5	5
187	Motif group HL_08510.1 View motif instance in 3D Basepair signature: cWW-F-F-cSH-F-F	0.00	-418.16	7	6
188	Motif group HL_00914.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.00	-435.06	6	6
189	Motif group HL_34617.5 View motif instance in 3D Basepair signature: cWW-tSW-F	0.00	-472.09	6	5	UNCG
190	Motif group HL_30680.3 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-486.38	5	4	Pseudoknot geometry
191	Motif group HL_80362.1 View motif instance in 3D Basepair signature: cWW-F-F-F	0.00	-491.41	7	5
192	Motif group HL_15574.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-497.76	4	4
193	Motif group HL_78284.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F	0.00	-557.57	7	6
194	Motif group HL_80241.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F	0.00	-584.87	7	6
195	Motif group HL_27483.1 View motif instance in 3D Basepair signature: cWW-F	0.00	-594.69	7	6
196	Motif group HL_22622.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-612.82	7	5
197	Motif group HL_89893.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.00	-627.74	7	5
198	Motif group HL_97983.1 View motif instance in 3D Basepair signature: cWW-F-F	0.00	-628.51	8	6
199	Motif group HL_71391.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.00	-645.44	6	5
200	Motif group HL_09452.1 View motif instance in 3D Basepair signature: cWW-F-F-F	0.00	-662.53	7	6
201	Motif group HL_56676.1 View motif instance in 3D Basepair signature: cWW-F-F	0.00	-675.01	7	6
202	Motif group HL_59330.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-755.73	8	6
203	Motif group HL_99867.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F	0.00	-794.13	6	5
204	Motif group HL_50318.1 View motif instance in 3D Basepair signature: cWW-cSH-F-F	0.00	-805.04	6	5
205	Motif group HL_66103.1 View motif instance in 3D Basepair signature: cWW-F-F	0.00	-815.20	7	5
206	Motif group HL_93383.1 View motif instance in 3D Basepair signature: cWW-cSH-F-F-F-F-F-F	0.00	-844.78	6	6
207	Motif group HL_43517.1 View motif instance in 3D Basepair signature: cWW-F-F-F	0.00	-851.80	6	5
208	Motif group HL_57875.1 View motif instance in 3D Basepair signature: cWW-F-F	0.00	-882.82	5	5
209	Motif group HL_85993.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-932.90	6	5
210	Motif group HL_42998.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F	0.00	-983.07	4	4
211	Motif group HL_51447.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-1174.57	7	5
212	Motif group HL_65794.5 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.00	-1354.85	5	5	Pseudoknot geometry
213	Motif group HL_46501.1 View motif instance in 3D Basepair signature: cWW-cWS	0.00	-1387.85	7	6
214	Motif group HL_32392.1 View motif instance in 3D Basepair signature: cWW-F-F	0.00	-1389.60	7	6
215	Motif group HL_67667.2 View motif instance in 3D Basepair signature: cWW-F-F	0.00	-1430.16	7	5
216	Motif group HL_59735.5 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F	0.00	-1534.33	6	5
217	Motif group HL_57176.2 View motif instance in 3D Basepair signature: cWW-F-F-F	0.00	-1536.01	5	5	Pseudoknot geometry with 3' bulge
218	Motif group HL_69752.2 View motif instance in 3D Basepair signature: cWW-F	0.00	-1577.62	6	4
219	Motif group HL_48778.2 View motif instance in 3D Basepair signature: cWW-F	0.00	-1616.80	6	5	Mini UNCG
220	Motif group HL_70751.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F	0.00	-1743.58	8	6
221	Motif group HL_36684.4 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F	0.00	-1796.39	5	5
222	Motif group HL_88364.2 View motif instance in 3D Basepair signature: cWW-cWW-F-F-F-F-F-F-F-F-F-F-F	0.00	-1996.40	10	9
223	Motif group HL_68572.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F	0.00	-2326.26	9	7
224	Motif group HL_59564.1 View motif instance in 3D Basepair signature: cWW-F-cSS-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F	0.00	-3599.29	15	14
225	Motif group HL_00317.1 View motif instance in 3D Basepair signature: cWW-F-cSS-F-F-F-F-F-F-F-F-F-F-F-F-F-F	0.00	-3668.30	15	14
226	Motif group HL_99324.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F	0.00	-3725.81	12	10
227	Motif group HL_85461.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F	0.00	-3897.77	11	11
228	Motif group HL_60293.1 View motif instance in 3D Basepair signature: cWW-cWH-F-cWH-cHW-cHW-cWH-cHW-cWH-F-cWH-cWH-cWH-F	0.00	-3941.33	15	14	G-quadruplex
229	Motif group HL_21400.1 View motif instance in 3D Basepair signature: cWW-tWH-tSW-cWW-cWH-cHW-cWH-cWH-cHW-cWH-cHW-cWH-cWH-cWH-cWH-cWH	0.00	-4030.76	17	16	G-quadruplex
230	Motif group HL_35354.1 View motif instance in 3D Basepair signature: cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH	0.00	-4034.43	17	16
231	Motif group HL_12758.3 View motif instance in 3D Basepair signature: cWW-tSH-F-cHW-F-F-cWH-cHW-cWH-cHW-cWH-cWH-F-tSH-F-cHW-F-cWH-cWH	0.00	-4041.61	18	17	G-quadruplex
232	Motif group HL_73916.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F-F	0.00	-4349.81	30	29
233	Motif group HL_58539.1 View motif instance in 3D Basepair signature: cWW-tWS-F-tHW-F-F-F-F-F-F-F-F	0.00	-4609.46	9.5	8
234	Motif group HL_99040.1 View motif instance in 3D Basepair signature: F-F-F-F-F-F	0.00	-5700.02	8	6
235	Motif group HL_89199.2 View motif instance in 3D Basepair signature: cWW-F-F-F	0.00	-5948.29	7	6	Mini UNCG
236	Motif group HL_56334.1 View motif instance in 3D Basepair signature: cWW-F	0.00	-6734.31	6	5	Mini UNCG
237	Motif group HL_29966.1 View motif instance in 3D Basepair signature: cWW-F-F-F	0.00	-6738.28	7	5
238	Motif group HL_86883.1 View motif instance in 3D Basepair signature: cWW-F-F-F	0.00	-6749.47	5.5	5
239	Motif group HL_32346.4 View motif instance in 3D Basepair signature: cWW-F	0.00	-6771.95	7	6
240	Motif group HL_65313.1 View motif instance in 3D Basepair signature: cWW-F-F-F	0.00	-6776.69	8	6.5
241	Motif group HL_52953.3 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.00	-6798.70	6	6
242	Motif group HL_55195.3 View motif instance in 3D Basepair signature: cWW-F	0.00	-6806.79	7	6
243	Motif group HL_28791.1 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.00	-6817.05	8	6
244	Motif group HL_12870.1 View motif instance in 3D Basepair signature: cWW-tHW-F-F-F-F-F-F-F-F-F	0.00	-7612.94	9	8
245	Motif group HL_26631.1 View motif instance in 3D Basepair signature: cWW-F-F-F	0.00	-9821.31	8	6
246	Motif group HL_78677.1 View motif instance in 3D Basepair signature: cWW-F-F	0.00	-9834.25	7	7
247	Motif group HL_35941.1 View motif instance in 3D Basepair signature: cWW-F	0.00	-9838.44	8	7
248	Motif group HL_60914.1 View motif instance in 3D Basepair signature: cWW-F	0.00	-9875.87	9	7
249	Motif group HL_09260.2 View motif instance in 3D Basepair signature: cWW-F-F-F-F	0.00	-9999.00	7	6	tRNA D-loop
250	Motif group HL_07951.3 View motif instance in 3D Basepair signature: cWW-F-F	0.00	-9999.00	7	6	tRNA D-loop
251	Motif group HL_76094.1 View motif instance in 3D Basepair signature: cWW-cWS-F-F	0.00	-9999.00	7	6
252	Motif group HL_81100.2 View motif instance in 3D Basepair signature: cWW	0.00	-9999.00	7	6
253	Motif group HL_94980.1 View motif instance in 3D Basepair signature: cWW-F-F	0.00	-9999.00	8	7