3JD5 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3JD5_001 | No text annotation | ||
| HL_3JD5_017 | No text annotation | ||
| HL_3JD5_002 | No text annotation | ||
| HL_3JD5_003 | No text annotation | ||
| HL_3JD5_004 | No text annotation | ||
| HL_3JD5_005 | No text annotation | ||
| HL_3JD5_006 | No text annotation | ||
| HL_3JD5_007 | No text annotation | ||
| HL_3JD5_018 | No text annotation | ||
| HL_3JD5_008 | No text annotation | ||
| HL_3JD5_009 | Mini UNCG | ||
| HL_3JD5_019 | No text annotation | ||
| HL_3JD5_010 | No text annotation | ||
| HL_3JD5_011 | tRNA D-loop | ||
| HL_3JD5_020 | No text annotation | ||
| HL_3JD5_012 | No text annotation | ||
| HL_3JD5_013 | No text annotation | ||
| HL_3JD5_021 | No text annotation | ||
| HL_3JD5_014 | No text annotation | ||
| HL_3JD5_015 | No text annotation | ||
| HL_3JD5_022 | No text annotation | ||
| HL_3JD5_023 | No text annotation | ||
| HL_3JD5_024 | No text annotation | ||
| HL_3JD5_016 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3JD5_032 | 1/A/301:314, 1/A/383:390 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3JD5_001 | Isolated non-canonical cWW pair | ||
| IL_3JD5_002 | No text annotation | ||
| IL_3JD5_043 | No text annotation | ||
| IL_3JD5_003 | No text annotation | ||
| IL_3JD5_004 | No text annotation | ||
| IL_3JD5_005 | Minor groove platform | ||
| IL_3JD5_006 | No text annotation | ||
| IL_3JD5_030 | No text annotation | ||
| IL_3JD5_044 | Kink-turn with non-sequential stacking | ||
| IL_3JD5_007 | No text annotation | ||
| IL_3JD5_045 | Isolated non-canonical cWW pair | ||
| IL_3JD5_008 | Tandem non-canonical cWW pairs | ||
| IL_3JD5_009 | No text annotation | ||
| IL_3JD5_010 | No text annotation | ||
| IL_3JD5_031 | No text annotation | ||
| IL_3JD5_033 | No text annotation | ||
| IL_3JD5_011 | No text annotation | ||
| IL_3JD5_012 | No text annotation | ||
| IL_3JD5_034 | No text annotation | ||
| IL_3JD5_013 | tSH-tHW-tHS | ||
| IL_3JD5_014 | 9x7 Sarcin-Ricin with inserted C; G-bulge | ||
| IL_3JD5_015 | Single bulged A | ||
| IL_3JD5_035 | Isolated non-canonical cWW pair | ||
| IL_3JD5_046 | Single bulged G | ||
| IL_3JD5_036 | Partly complementary | ||
| IL_3JD5_016 | No text annotation | ||
| IL_3JD5_017 | No text annotation | ||
| IL_3JD5_037 | No text annotation | ||
| IL_3JD5_047 | No text annotation | ||
| IL_3JD5_018 | Minor groove platform with extra cWW | ||
| IL_3JD5_038 | Minor groove platform | ||
| IL_3JD5_019 | No text annotation | ||
| IL_3JD5_039 | No text annotation | ||
| IL_3JD5_048 | No text annotation | ||
| IL_3JD5_020 | No text annotation | ||
| IL_3JD5_021 | Tandem non-canonical cWW pairs | ||
| IL_3JD5_040 | No text annotation | ||
| IL_3JD5_022 | No text annotation | ||
| IL_3JD5_023 | No text annotation | ||
| IL_3JD5_024 | Major groove intercalation | ||
| IL_3JD5_041 | Isolated non-canonical cWW contact | ||
| IL_3JD5_025 | Tandem non-canonical cWW pairs | ||
| IL_3JD5_026 | No text annotation | ||
| IL_3JD5_027 | No text annotation | ||
| IL_3JD5_028 | Isolated non-canonical cWW pair | ||
| IL_3JD5_029 | No text annotation | ||
| IL_3JD5_049 | No text annotation | ||
| IL_3JD5_042 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3JD5_006 | No text annotation | ||
| J3_3JD5_012 | No text annotation | ||
| J3_3JD5_001 | No text annotation | ||
| J3_3JD5_013 | No text annotation | ||
| J3_3JD5_002 | No text annotation | ||
| J3_3JD5_007 | No text annotation | ||
| J3_3JD5_008 | No text annotation | ||
| J3_3JD5_003 | No text annotation | ||
| J3_3JD5_009 | No text annotation | ||
| J3_3JD5_014 | No text annotation | ||
| J3_3JD5_010 | No text annotation | ||
| J3_3JD5_004 | No text annotation | ||
| J3_3JD5_011 | No text annotation | ||
| J3_3JD5_005 | No text annotation | ||
| J4_3JD5_001 | No text annotation | ||
| J4_3JD5_002 | No text annotation | ||
| J6_3JD5_001 | No text annotation |
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