RNA 3D Hub //

5FL8 Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_5FL8_0011/x/90:96No text annotation
homologous
HL_8C3A_003
NA
HL_5FL8_0021/x/132:136No text annotation
homologous
HL_5TBW_004
NA
HL_5FL8_0511/x/193:202No text annotation
HL_5FL8_0041/x/216:225No text annotation
HL_5FL8_0051/x/277:288No text annotation
HL_5FL8_0061/x/300:315No text annotation
HL_5FL8_0521/x/379:390No text annotation
HL_5FL8_0071/x/381:389Anticodon loop related
geometric
HL_5T83_002
HL_81376.3
HL_5FL8_0081/x/531:561No text annotation
HL_5FL8_0091/x/599:604GNRA
homologous
HL_8P9A_125
HL_34789.4
HL_5FL8_0101/x/686:694No text annotation
homologous
HL_8CRE_014
NA
HL_5FL8_0531/x/730:740No text annotation
HL_5FL8_0111/x/732:737GNRA
geometric
HL_1G1X_003
NA
HL_5FL8_0121/x/758:773No text annotation
HL_5FL8_0131/x/844:849No text annotation
geometric
HL_5TBW_006
NA
HL_5FL8_0141/x/876:885No text annotation
geometric
HL_6DTD_001
HL_89167.2
HL_5FL8_0151/x/910:918No text annotation
geometric
HL_2ZZM_002
HL_33487.1
HL_5FL8_0161/x/958:963No text annotation
HL_5FL8_0171/x/1020:1033No text annotation
HL_5FL8_0541/x/1073:1085No text annotation
HL_5FL8_0551/x/1118:1140No text annotation
HL_5FL8_0191/x/1125:1133No text annotation
HL_5FL8_0201/x/1147:1156No text annotation
HL_5FL8_0211/x/1232:1256No text annotation
HL_5FL8_0221/x/1267:1274No text annotation
HL_5FL8_0231/x/1342:1362No text annotation
HL_5FL8_0241/x/1403:1408GNRA
geometric
HL_4WF9_031
HL_34789.4
HL_5FL8_0251/x/1461:1471No text annotation
HL_5FL8_0261/x/1500:1516No text annotation
HL_5FL8_0271/x/1544:1549GNRA variation
homologous
HL_8CRE_032
NA
HL_5FL8_0281/x/1564:1576No text annotation
HL_5FL8_0291/x/1597:1610No text annotation
HL_5FL8_0301/x/1679:1689tRNA D-loop
geometric
HL_6UFG_006
HL_88397.1
HL_5FL8_0311/x/1719:1725No text annotation
homologous
HL_5TBW_038
NA
HL_5FL8_0321/x/1861:1869GNRA wlth extra near cWW
geometric
HL_5J7L_012
NA
HL_5FL8_0331/x/1923:1928UNCG
homologous
HL_5TBW_043
NA
HL_5FL8_0561/x/2008:2013No text annotation
geometric
HL_8Y0B_001
HL_69752.4
HL_5FL8_0351/x/2065:2071No text annotation
HL_5FL8_0361/x/2134:2146No text annotation
HL_5FL8_0371/x/2163:2171GNRA wlth tandem sheared
geometric
HL_4WF9_004
HL_98423.3
HL_5FL8_0571/x/2203:2239No text annotation
HL_5FL8_0381/x/2217:2229No text annotation
HL_5FL8_0391/x/2253:2263No text annotation
HL_5FL8_0401/x/2292:2300No text annotation
geometric
HL_4V9F_051
HL_61418.2
HL_5FL8_0411/x/2567:2574No text annotation
HL_5FL8_0421/x/2672:2682No text annotation
geometric
HL_2ZZM_002
HL_33487.1
HL_5FL8_0581/x/2724:2732No text annotation
HL_5FL8_0591/x/2744:2749GNRA
homologous
HL_8CRE_058
NA
HL_5FL8_0451/y/47:56Pseudoknot geometry
geometric
HL_4GXY_003
HL_97725.1
HL_5FL8_0461/y/69:89No text annotation
homologous
HL_8P9A_187
HL_68571.1
HL_5FL8_0471/y/108:114No text annotation
homologous
HL_8CRE_076
NA
HL_5FL8_0481/y/123:130No text annotation
geometric
HL_2B3J_001
HL_42293.1
HL_5FL8_0491/z/32:45No text annotation
homologous
HL_8OI5_068
HL_01182.1
HL_5FL8_0501/z/88:93GNRA
homologous
HL_5TBW_186
NA

Problematic loops

#loop idProblemSequence
HL_5FL8_003No text annotation
HL_5FL8_018No text annotation
HL_5FL8_034No text annotation
HL_5FL8_043No text annotation
HL_5FL8_044No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_5FL8_0031/x/379:381,
1/x/389:390		Single stack bend with SAM intercalation
geometric
IL_2QWY_008
IL_75501.1
IL_5FL8_0041/x/429:431,
1/x/628:630		Isolated non-canonical cWW pair
homologous
IL_5TBW_016
NA
IL_5FL8_0631/x/435:508,
1/x/583:624		No text annotation
IL_5FL8_0071/x/512:516,
1/x/574:579		No text annotation
IL_5FL8_0641/x/512:526,
1/x/566:579		No text annotation
IL_5FL8_0081/x/516:525,
1/x/568:574		No text annotation
IL_5FL8_0091/x/525:526,
1/x/566:568		Single stack bend
geometric
IL_5J7L_032
NA
IL_5FL8_0651/x/668:670,
1/x/792:794		Isolated non-canonical cWW pair
homologous
IL_8CRE_023
NA
IL_5FL8_0661/x/723:730,
1/x/740:747		No text annotation
IL_5FL8_0141/x/724:730,
1/x/740:746		No text annotation
IL_5FL8_0151/x/730:732,
1/x/737:740		No text annotation
geometric
IL_4V9F_053
IL_49140.1
IL_5FL8_0161/x/755:757,
1/x/774:777		Isolated non-canonical cWW pair
geometric
IL_5J7L_009
NA
IL_5FL8_0671/x/803:809,
1/x/931:940		No text annotation
IL_5FL8_0681/x/813:821,
1/x/904:927		No text annotation
IL_5FL8_0691/x/832:840,
1/x/853:862		No text annotation
IL_5FL8_0201/x/868:873,
1/x/887:891		No text annotation
IL_5FL8_0701/x/873:875,
1/x/886:887		Single bulged U
homologous
IL_8P9A_260
IL_97561.3
IL_5FL8_0711/x/977:1071,
1/x/1087:1104		No text annotation
IL_5FL8_0231/x/1117:1125,
1/x/1133:1141		No text annotation
IL_5FL8_0721/x/1162:1180,
1/x/1325:1337		No text annotation
IL_5FL8_0731/x/1180:1186,
1/x/1320:1325		No text annotation
geometric
IL_3IGI_015
IL_95349.1
IL_5FL8_0741/x/1186:1266,
1/x/1275:1320		No text annotation
IL_5FL8_0251/x/1376:1381,
1/x/1425:1431		No text annotation
IL_5FL8_0751/x/1385:1387,
1/x/1420:1421		Single bulged A
homologous
IL_8CRE_062
NA
IL_5FL8_0761/x/1387:1395,
1/x/1415:1420		Kink-turn
geometric
IL_6HCT_001
IL_74205.1
IL_5FL8_0281/x/1398:1400,
1/x/1411:1412		Single bulged A
homologous
IL_5TBW_060
NA
IL_5FL8_0771/x/1537:1563,
1/x/1577:1584		No text annotation
IL_5FL8_0301/x/1616:1621,
1/x/1824:1828		No text annotation
IL_5FL8_0781/x/1653:1659,
1/x/1790:1802		No text annotation
IL_5FL8_0311/x/1661:1665,
1/x/1784:1788		No text annotation
geometric
IL_5TBW_121
NA
IL_5FL8_0791/x/1661:1671,
1/x/1776:1788		No text annotation
IL_5FL8_0321/x/1665:1671,
1/x/1776:1784		No text annotation
IL_5FL8_0361/x/1702:1708,
1/x/1736:1743		No text annotation
IL_5FL8_0801/x/1711:1718,
1/x/1726:1733		Kink-turn
geometric
IL_3U4M_004
IL_90775.2
IL_5FL8_0381/x/1916:1923,
1/x/1928:1936		No text annotation
IL_5FL8_0391/x/1981:1983,
1/x/2038:2041		No text annotation
IL_5FL8_0411/x/1987:1991,
1/x/2030:2034		No text annotation
IL_5FL8_0811/x/1987:1997,
1/x/2024:2034		No text annotation
IL_5FL8_0421/x/1991:2001,
1/x/2020:2030		No text annotation
IL_5FL8_0461/x/2152:2163,
1/x/2171:2184		No text annotation
IL_5FL8_0481/x/2204:2206,
1/x/2237:2238		Single bulged U
homologous
IL_8P9A_314
IL_97561.3
IL_5FL8_0491/x/2206:2210,
1/x/2235:2237		No text annotation
IL_5FL8_0501/x/2210:2217,
1/x/2229:2235		No text annotation
IL_5FL8_0511/x/2277:2290,
1/x/2302:2307		No text annotation
IL_5FL8_0821/x/2423:2427,
1/x/2603:2607		No text annotation
IL_5FL8_0831/x/2427:2565,
1/x/2576:2603		No text annotation
IL_5FL8_0841/x/2719:2721,
1/x/2735:2738		No text annotation
geometric
IL_9AXU_077
IL_16315.2
IL_5FL8_0561/y/66:69,
1/y/89:93		No text annotation
geometric
IL_4PHY_003
IL_49140.1
IL_5FL8_0601/z/20:26,
1/z/57:59		No text annotation
IL_5FL8_0851/z/20:31,
1/z/46:59		No text annotation
IL_5FL8_0611/z/26:31,
1/z/46:57		No text annotation
IL_5FL8_0861/z/72:87,
1/z/94:106		No text annotation
IL_5FL8_0621/z/82:87,
1/z/94:98		No text annotation

Problematic loops

#loop idProblemSequence
IL_5FL8_001Isolated non-canonical cWW pair
IL_5FL8_002Isolated non-canonical cWW pair
IL_5FL8_005Isolated non-canonical cWW pair
IL_5FL8_006Tandem non-canonical cWW pairs
IL_5FL8_010No text annotation
IL_5FL8_011Tandem non-canonical cWW pairs
IL_5FL8_012Tandem non-canonical cWW pairs
IL_5FL8_013Tandem non-canonical cWW pairs
IL_5FL8_017No text annotation
IL_5FL8_018No text annotation
IL_5FL8_019Isolated non-canonical cWW pair
IL_5FL8_021No text annotation
IL_5FL8_022No text annotation
IL_5FL8_024Tandem non-canonical cWW pairs
IL_5FL8_026Isolated non-canonical cWW pair
IL_5FL8_027No text annotation
IL_5FL8_029Tandem non-canonical cWW pairs
IL_5FL8_033Isolated non-canonical cWW pair
IL_5FL8_034Isolated non-canonical cWW pair
IL_5FL8_035Isolated non-canonical cWW pair
IL_5FL8_037No text annotation
IL_5FL8_040Tandem non-canonical cWW pairs
IL_5FL8_043Isolated non-canonical cWW pair
IL_5FL8_044Tandem non-canonical cWW pairs
IL_5FL8_045Isolated non-canonical cWW pair
IL_5FL8_047No text annotation
IL_5FL8_052Isolated non-canonical cWW pair
IL_5FL8_053No text annotation
IL_5FL8_054Isolated non-canonical cWW pair
IL_5FL8_055No text annotation
IL_5FL8_057Tandem non-canonical cWW pairs
IL_5FL8_058Isolated non-canonical cWW pair
IL_5FL8_059Isolated non-canonical cWW pair

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_5FL8_0051/x/169:192,
1/x/203:215,
1/x/226:253		No text annotation
J3_5FL8_0061/x/673:721,
1/x/749:754,
1/x/778:789		No text annotation
J3_5FL8_0011/x/812:821,
1/x/904:910,
1/x/918:928		No text annotation
J3_5FL8_0021/x/828:832,
1/x/862:868,
1/x/891:897		No text annotation
J3_5FL8_0071/x/828:832,
1/x/862:873,
1/x/887:897		No text annotation
J3_5FL8_0081/x/1477:1485,
1/x/1857:1859,
1/x/1871:1876		No text annotation
J3_5FL8_0091/x/1488:1536,
1/x/1585:1649,
1/x/1806:1854		No text annotation
J3_5FL8_0101/x/1674:1677,
1/x/1691:1698,
1/x/1747:1773		No text annotation
J3_5FL8_0041/z/8:18,
1/z/61:69,
1/z/109:113		No text annotation
J6_5FL8_0011/x/947:956,
1/x/965:970,
1/x/1111:1117,
1/x/1141:1161,
1/x/1338:1339,
1/x/1365:1372		No text annotation
J6_5FL8_0021/x/1883:1923,
1/x/1928:1981,
1/x/2041:2062,
1/x/2074:2201,
1/x/2241:2290,
1/x/2302:2349		No text annotation

Problematic loops

#loop idProblemSequence
J3_5FL8_003No text annotation

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