Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_4V72_0011/A1/13:22No text annotation
Not in a motif group
homologous
HL_3WFS_001
NA
HL_4V72_0021/A1/31:39No text annotation
Not in a motif group
HL_4V72_0031/A1/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4RDX_003
HL_22280.4
HL_4V72_0041/A3/13:23No text annotation
Not in a motif group
homologous
HL_6PMO_003
NA
HL_4V72_0051/A3/31:41No text annotation
Not in a motif group
homologous
HL_5E6M_002
HL_34168.2
HL_4V72_0061/A3/54:62T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_4V8N_145
HL_22280.4
HL_4V72_0071/AA/10:24No text annotation
Not in a motif group
HL_4V72_0081/AA/83:86No text annotation
Not in a motif group
HL_4V72_0091/AA/158:163GNRA
Not in a motif group
homologous
HL_5J7L_003
HL_35490.2
HL_4V72_0101/AA/186:191GNRA
Not in a motif group
homologous
HL_5J7L_004
HL_35490.2
HL_4V72_0111/AA/207:212No text annotation
Not in a motif group
geometric
HL_5J7L_143
HL_70546.1
HL_4V72_0121/AA/260:267No text annotation
Not in a motif group
HL_4V72_0131/AA/296:301GNRA
Not in a motif group
homologous
HL_5J7L_007
HL_35490.2
HL_4V72_0141/AA/318:335No text annotation
Not in a motif group
HL_4V72_0151/AA/341:348No text annotation
Not in a motif group
HL_4V72_0161/AA/379:384Other HL
Not in a motif group
geometric
HL_5J7L_180
HL_35490.2
HL_4V72_0171/AA/419:424UNCG
Not in a motif group
homologous
HL_5J7L_011
HL_03562.2
HL_4V72_0181/AA/462:470No text annotation
Not in a motif group
HL_4V72_0191/AA/522:527No text annotation
Not in a motif group
geometric
HL_4V9F_003
HL_52841.1
HL_4V72_0201/AA/617:623No text annotation
Not in a motif group
homologous
HL_4LFB_014
HL_26881.3
HL_4V72_0211/AA/689:698No text annotation
Not in a motif group
homologous
HL_6CZR_086
HL_12326.1
HL_4V72_0221/AA/726:731Other HL
Not in a motif group
homologous
HL_5J7L_016
HL_87030.2
HL_4V72_0231/AA/786:796No text annotation
Not in a motif group
homologous
HL_6CZR_088
HL_12326.1
HL_4V72_0241/AA/840:846No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_70072.1
HL_4V72_0251/AA/862:867GNRA
Not in a motif group
homologous
HL_5J7L_019
HL_35490.2
HL_4V72_0261/AA/897:902GNRA
Not in a motif group
homologous
HL_6CZR_091
HL_35490.2
HL_4V72_0271/AA/963:972No text annotation
Not in a motif group
homologous
HL_6CZR_092
NA
HL_4V72_0281/AA/1012:1017GNRA
Not in a motif group
homologous
HL_4LFB_022
HL_35490.2
HL_4V72_0291/AA/1028:1033No text annotation
Not in a motif group
geometric
HL_5KK5_001
HL_94651.3
HL_4V72_0301/AA/1076:1081GNRA
Not in a motif group
homologous
HL_5J7L_023
HL_35490.2
HL_4V72_0311/AA/1089:1096No text annotation
Not in a motif group
homologous
HL_4LFB_025
HL_71554.2
HL_4V72_0321/AA/1134:1140No text annotation
Not in a motif group
homologous
HL_4LFB_026
HL_03562.2
HL_4V72_0331/AA/1165:1171GNRA
Not in a motif group
homologous
HL_4LFB_027
HL_35490.2
HL_4V72_0341/AA/1265:1270Other HL
Not in a motif group
homologous
HL_4LFB_028
HL_35490.2
HL_4V72_0351/AA/1314:1323No text annotation
Not in a motif group
homologous
HL_4LFB_029
HL_41998.1
HL_4V72_0361/AA/1356:1366No text annotation
Not in a motif group
homologous
HL_4LFB_030
HL_96366.1
HL_4V72_0371/AA/1449:1454UNCG
Not in a motif group
homologous
HL_5J7L_030
HL_03562.2
HL_4V72_0381/AA/1515:1520No text annotation
Not in a motif group
homologous
HL_4LFB_032
NA
HL_4V72_0391/BA/59:68No text annotation
Not in a motif group
homologous
HL_7RQB_001
HL_99167.2
HL_4V72_0401/BA/87:95No text annotation
Not in a motif group
homologous
HL_5J7L_135
HL_03186.1
HL_4V72_0411/BA/123:128No text annotation
Not in a motif group
homologous
HL_5J7L_136
HL_70546.1
HL_4V72_0421/BA/137:142No text annotation
Not in a motif group
HL_4V72_0431/BA/158:168No text annotation
Not in a motif group
homologous
HL_5J7L_138
HL_81820.1
HL_4V72_0441/BA/194:201No text annotation
Not in a motif group
homologous
HL_7RQB_006
HL_06192.2
HL_4V72_0451/BA/225:230No text annotation
Not in a motif group
homologous
HL_5J7L_140
HL_56241.1
HL_4V72_0461/BA/246:252No text annotation
Not in a motif group
homologous
HL_7RQB_008
HL_67216.7
HL_4V72_0471/BA/305:312T-loop with 1 bulged base
Not in a motif group
homologous
HL_5J7L_142
HL_41998.1
HL_4V72_0481/BA/319:323No text annotation
Not in a motif group
homologous
HL_4WF9_011
HL_70546.1
HL_4V72_0491/BA/327:335No text annotation
Not in a motif group
homologous
HL_4WF9_012
HL_08002.9
HL_4V72_0501/BA/382:392No text annotation
Not in a motif group
homologous
HL_5J7L_145
HL_91503.4
HL_4V72_0511/BA/410:417No text annotation
Not in a motif group
homologous
HL_7RQB_014
HL_96598.1
HL_4V72_0521/BA/462:467GNRA
Not in a motif group
homologous
HL_5J7L_147
HL_35490.2
HL_4V72_0531/BA/487:493No text annotation
Not in a motif group
homologous
HL_5J7L_148
HL_35490.2
HL_4V72_0541/BA/542:551No text annotation
Not in a motif group
geometric
HL_5WWT_001
HL_14843.1
HL_4V72_0551/BA/567:575No text annotation
Not in a motif group
HL_4V72_0561/BA/611:617No text annotation
Not in a motif group
homologous
HL_5J7L_151
HL_90617.3
HL_4V72_0571/BA/629:634No text annotation
Not in a motif group
homologous
HL_7RQB_020
HL_35490.2
HL_4V72_0581/BA/641:647No text annotation
Not in a motif group
HL_4V72_0591/BA/712:719No text annotation
Not in a motif group
geometric
HL_7A0S_056
HL_84085.2
HL_4V72_0601/BA/744:753No text annotation
Not in a motif group
homologous
HL_4WF9_023
HL_39334.6
HL_4V72_0611/BA/779:785No text annotation
Not in a motif group
geometric
HL_6VMY_004
HL_91058.1
HL_4V72_0621/BA/826:831No text annotation
Not in a motif group
homologous
HL_7A0S_024
HL_53619.1
HL_4V72_0641/BA/955:962GNRA
Not in a motif group
homologous
HL_4WF9_027
HL_35490.2
HL_4V72_0651/BA/978:985No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_76539.5
HL_4V72_0661/BA/1064:1074No text annotation
Not in a motif group
geometric
HL_5J7L_143
HL_70546.1
HL_4V72_0671/BA/1092:1099No text annotation
Not in a motif group
geometric
HL_5J7L_151
HL_90617.3
HL_4V72_0681/BA/1172:1177No text annotation
Not in a motif group
geometric
HL_1OOA_001
HL_85680.1
HL_4V72_0691/BA/1222:1227Other HL
Not in a motif group
homologous
HL_5J7L_164
HL_87030.2
HL_4V72_0701/BA/1281:1289T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5J7L_165
HL_41998.1
HL_4V72_0711/BA/1324:1330No text annotation
Not in a motif group
homologous
HL_5J7L_166
HL_46680.1
HL_4V72_0721/BA/1363:1368No text annotation
Not in a motif group
homologous
HL_7RQB_035
HL_87030.2
HL_4V72_0731/BA/1389:1398No text annotation
Not in a motif group
HL_4V72_0741/BA/1450:1461No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_76539.5
HL_4V72_0751/BA/1492:1498No text annotation
Not in a motif group
homologous
HL_5J7L_170
HL_46680.1
HL_4V72_0761/BA/1533:1538No text annotation
Not in a motif group
geometric
HL_5TBW_006
HL_98984.4
HL_4V72_0771/BA/1565:1568No text annotation
Not in a motif group
homologous
HL_5J7L_172
HL_38927.5
HL_4V72_0781/BA/1612:1619No text annotation
Not in a motif group
homologous
HL_7A0S_040
HL_64430.2
HL_4V72_0791/BA/1630:1636GNRA with one bulged base
Not in a motif group
homologous
HL_5J7L_174
HL_35490.2
HL_4V72_0801/BA/1691:1696UNCG
Not in a motif group
geometric
HL_5D5L_003
HL_03562.2
HL_4V72_0811/BA/1728:1731No text annotation
Not in a motif group
geometric
HL_4WF9_037
HL_53837.2
HL_4V72_0821/BA/1752:1756No text annotation
Not in a motif group
homologous
HL_5J7L_177
HL_76539.5
HL_4V72_0831/BA/1777:1787No text annotation
Not in a motif group
homologous
HL_4WF9_043
HL_43613.5
HL_4V72_0841/BA/1806:1811No text annotation
Not in a motif group
homologous
HL_5J7L_179
HL_35490.2
HL_4V72_0851/BA/1868:1873No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_4V72_0861/BA/1910:1920No text annotation
Not in a motif group
geometric
HL_5TBW_049
HL_71924.2
HL_4V72_0871/BA/1949:1957No text annotation
Not in a motif group
homologous
HL_7A0S_048
HL_51824.1
HL_4V72_0881/BA/2027:2036No text annotation
Not in a motif group
homologous
HL_4WF9_047
HL_90642.6
HL_4V72_0891/BA/2143:2148UNCG
Not in a motif group
homologous
HL_3U4M_001
HL_03562.2
HL_4V72_0901/BA/2209:2215No text annotation
Not in a motif group
homologous
HL_5J7L_185
HL_16845.6
HL_4V72_0911/BA/2248:2256No text annotation
Not in a motif group
homologous
HL_4WF9_049
HL_53171.2
HL_4V72_0921/BA/2264:2276No text annotation
Not in a motif group
homologous
HL_7RQB_054
HL_19870.6
HL_4V72_0931/BA/2303:2313No text annotation
Not in a motif group
geometric
HL_5J7L_143
HL_70546.1
HL_4V72_0941/BA/2323:2332No text annotation
Not in a motif group
geometric
HL_2JLT_001
HL_19727.1
HL_4V72_0951/BA/2356:2361Other HL
Not in a motif group
homologous
HL_5J7L_190
HL_87030.2
HL_4V72_0961/BA/2374:2379GNRA
Not in a motif group
homologous
HL_4WF9_054
HL_35490.2
HL_4V72_0971/BA/2404:2413No text annotation
Not in a motif group
homologous
HL_5J7L_192
HL_40210.2
HL_4V72_0981/BA/2471:2479No text annotation
Not in a motif group
homologous
HL_4WF9_056
HL_06192.2
HL_4V72_0991/BA/2528:2535No text annotation
Not in a motif group
homologous
HL_7RQB_061
HL_91104.1
HL_4V72_1001/BA/2551:2557No text annotation
Not in a motif group
homologous
HL_4WF9_058
HL_43656.2
HL_4V72_1011/BA/2594:2599GNRA
Not in a motif group
homologous
HL_5J7L_196
HL_35490.2
HL_4V72_1021/BA/2658:2663GNRA
Not in a motif group
homologous
HL_5J7L_197
HL_35490.2
HL_4V72_1031/BA/2701:2706Ribsomal LSU H95
Not in a motif group
homologous
HL_4WF9_061
HL_46680.1
HL_4V72_1041/BA/2745:2759No text annotation
Not in a motif group
homologous
HL_5J7L_199
HL_56677.7
HL_4V72_1051/BA/2796:2800No text annotation
Not in a motif group
geometric
HL_5VW1_002
HL_38927.5
HL_4V72_1061/BA/2819:2827No text annotation
Not in a motif group
homologous
HL_5J7L_201
HL_64690.1
HL_4V72_1071/BA/2856:2861Other HL
Not in a motif group
homologous
HL_5J7L_202
HL_35490.2
HL_4V72_1081/BB/38:44No text annotation
Not in a motif group
homologous
HL_7RQB_070
HL_87939.2
HL_4V72_1091/BB/86:90No text annotation
Not in a motif group
homologous
HL_5J7L_204
HL_38927.5

Problematic loops

#loop idProblemSequence
HL_4V72_063No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_4V72_0011/AA/30:32,
1/AA/552:553
Single bulged G
Not in a motif group
homologous
IL_4LFB_001
IL_00225.3
IL_4V72_0021/AA/44:46,
1/AA/395:398
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_5ML7_010
IL_43275.1
IL_4V72_0031/AA/47:52,
1/AA/359:361
No text annotation
Not in a motif group
geometric
IL_5J7L_003
IL_14177.1
IL_4V72_0041/AA/54:56,
1/AA/356:357
Minor groove platform
Not in a motif group
geometric
IL_1U6B_007
IL_42622.4
IL_4V72_0051/AA/63:66,
1/AA/103:104
Multiple bulged bases
Not in a motif group
homologous
IL_4LFB_005
IL_76389.1
IL_4V72_0061/AA/67:69,
1/AA/99:102
Minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_006
IL_65006.1
IL_4V72_0071/AA/70:73,
1/AA/97:98
Minor groove platform
Not in a motif group
homologous
IL_5J7L_007
IL_15052.1
IL_4V72_0081/AA/75:77,
1/AA/92:95
Single bulged G, near cWW
Not in a motif group
homologous
IL_5J7L_008
IL_43275.1
IL_4V72_0091/AA/128:131,
1/AA/231:233
No text annotation
Not in a motif group
IL_4V72_0101/AA/132:136,
1/AA/227:230
Minor groove platform related
Not in a motif group
homologous
IL_6CZR_120
IL_58764.3
IL_4V72_0111/AA/144:146,
1/AA/176:178
Isolated cWH basepair
Not in a motif group
homologous
IL_5J7L_011
IL_70707.2
IL_4V72_0121/AA/147:153,
1/AA/168:175
tWH-tWH-tHW-tHW
Not in a motif group
homologous
IL_5J7L_012
IL_80604.2
IL_4V72_0131/AA/203:206,
1/AA/213:214
No text annotation
Not in a motif group
IL_4V72_0141/AA/242:247,
1/AA/277:284
Kink-turn with non-sequential stacking
Not in a motif group
homologous
IL_5J7L_014
IL_45067.2
IL_4V72_0151/AA/249:253,
1/AA/273:275
No text annotation
Not in a motif group
geometric
IL_4ERD_003
IL_70149.1
IL_4V72_0161/AA/257:260,
1/AA/267:269
No text annotation
Not in a motif group
IL_4V72_0171/AA/292:294,
1/AA/303:308
No text annotation
Not in a motif group
IL_4V72_0181/AA/371:375,
1/AA/389:390
C-loop
Not in a motif group
geometric
IL_5J7L_018
IL_75255.1
IL_4V72_0191/AA/375:376,
1/AA/387:389
Single bulged G
Not in a motif group
homologous
IL_5J7L_019
IL_00225.3
IL_4V72_0201/AA/409:416,
1/AA/427:433
No text annotation
Not in a motif group
homologous
IL_4LFB_017
IL_28026.1
IL_4V72_0211/AA/440:442,
1/AA/492:497
No text annotation
Not in a motif group
homologous
IL_5J7L_021
IL_22248.1
IL_4V72_0221/AA/446:450,
1/AA/483:488
tSH-tHW-tWW
Not in a motif group
homologous
IL_5J7L_022
IL_88269.3
IL_4V72_0231/AA/450:455,
1/AA/477:483
No text annotation
Not in a motif group
homologous
IL_4LFB_019
IL_11882.1
IL_4V72_0241/AA/456:460,
1/AA/471:476
No text annotation
Not in a motif group
IL_4V72_0251/AA/460:462,
1/AA/470:471
Single bulged A
Not in a motif group
geometric
IL_6D3P_004
IL_37497.6
IL_4V72_0261/AA/504:511,
1/AA/540:541
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_024
IL_15861.7
IL_4V72_0271/AA/515:521,
1/AA/528:536
No text annotation
Not in a motif group
geometric
IL_4V88_415
IL_55871.1
IL_4V72_0281/AA/580:585,
1/AA/756:761
No text annotation
Not in a motif group
IL_4V72_0291/AA/594:596,
1/AA/644:645
Major groove platform
Not in a motif group
geometric
IL_1S03_004
IL_27635.3
IL_4V72_0301/AA/596:597,
1/AA/641:644
Minor groove platform
Not in a motif group
geometric
IL_3RW6_001
IL_15052.1
IL_4V72_0311/AA/605:612,
1/AA/628:633
No text annotation
Not in a motif group
homologous
IL_5J7L_030
IL_78349.1
IL_4V72_0321/AA/654:655,
1/AA/751:754
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_4V88_428
IL_50694.2
IL_4V72_0331/AA/658:660,
1/AA/745:748
No text annotation
Not in a motif group
geometric
IL_4P3T_002
IL_46796.1
IL_4V72_0341/AA/662:667,
1/AA/739:743
No text annotation
Not in a motif group
IL_4V72_0351/AA/673:678,
1/AA/712:717
No text annotation
Not in a motif group
geometric
IL_6CZR_142
IL_04668.2
IL_4V72_0361/AA/682:688,
1/AA/699:708
No text annotation
Not in a motif group
IL_4V72_0371/AA/774:778,
1/AA/804:805
Left turn
Not in a motif group
homologous
IL_5J7L_036
IL_29346.1
IL_4V72_0381/AA/779:783,
1/AA/799:803
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_037
IL_17136.1
IL_4V72_0391/AA/821:823,
1/AA/877:880
No text annotation
Not in a motif group
geometric
IL_4N0T_004
IL_46796.1
IL_4V72_0401/AA/887:894,
1/AA/905:910
8x6 Sarcin-Ricin with inserted Y; G-bulge
Not in a motif group
homologous
IL_4LFB_034
IL_24606.2
IL_4V72_0411/AA/922:923,
1/AA/1393:1395
Single bulged A
Not in a motif group
homologous
IL_5J7L_039
IL_37497.6
IL_4V72_0421/AA/925:927,
1/AA/1390:1391
Single bulged G
Not in a motif group
homologous
IL_4LFB_036
IL_00225.3
IL_4V72_0431/AA/933:936,
1/AA/1379:1384
No text annotation
Not in a motif group
homologous
IL_6CZR_149
IL_93211.1
IL_4V72_0441/AA/953:954,
1/AA/1226:1228
No text annotation
Not in a motif group
homologous
IL_6CZR_150
NA
IL_4V72_0451/AA/993:997,
1/AA/1044:1045
Minor groove platform
Not in a motif group
geometric
IL_4LFB_039
IL_47078.1
IL_4V72_0461/AA/997:999,
1/AA/1041:1044
No text annotation
Not in a motif group
geometric
IL_4N0T_004
IL_46796.1
IL_4V72_0471/AA/1048:1050,
1/AA/1208:1209
Single bulged U
Not in a motif group
homologous
IL_5J7L_046
IL_83039.16
IL_4V72_0481/AA/1051:1056,
1/AA/1204:1207
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4V88_473
IL_30621.4
IL_4V72_0491/AA/1057:1058,
1/AA/1199:1203
Minor groove platform
Not in a motif group
homologous
IL_6CZR_155
IL_80097.1
IL_4V72_0501/AA/1059:1061,
1/AA/1195:1198
No text annotation
Not in a motif group
geometric
IL_3ICQ_003
IL_70707.2
IL_4V72_0511/AA/1061:1063,
1/AA/1193:1195
No text annotation
Not in a motif group
IL_4V72_0521/AA/1124:1128,
1/AA/1144:1149
No text annotation
Not in a motif group
homologous
IL_5J7L_051
IL_93211.1
IL_4V72_0531/AA/1129:1132,
1/AA/1142:1143
Minor groove platform
Not in a motif group
homologous
IL_5J7L_052
IL_15052.1
IL_4V72_0541/AA/1158:1161,
1/AA/1175:1181
No text annotation
Not in a motif group
geometric
IL_4LFB_050
IL_42032.1
IL_4V72_0551/AA/1247:1253,
1/AA/1284:1290
No text annotation
Not in a motif group
homologous
IL_5J7L_054
IL_09129.1
IL_4V72_0561/AA/1255:1258,
1/AA/1277:1282
No text annotation
Not in a motif group
homologous
IL_4LFB_052
IL_84205.1
IL_4V72_0571/AA/1259:1263,
1/AA/1272:1276
Triple sheared
Not in a motif group
homologous
IL_5J7L_056
IL_56467.8
IL_4V72_0581/AA/1303:1309,
1/AA/1328:1334
No text annotation
Not in a motif group
IL_4V72_0591/AA/1399:1401,
1/AA/1501:1504
No text annotation
Not in a motif group
geometric
IL_4V88_463
IL_36143.3
IL_4V72_0601/AA/1401:1404,
1/AA/1497:1501
No text annotation
Not in a motif group
geometric
IL_4V88_464
IL_99670.1
IL_4V72_0611/AA/1405:1407,
1/AA/1494:1496
No text annotation
Not in a motif group
geometric
IL_5MWI_001
IL_86319.2
IL_4V72_0621/AA/1407:1409,
1/AA/1491:1494
No text annotation
Not in a motif group
geometric
IL_4M4O_001
IL_86319.2
IL_4V72_0631/AA/1412:1415,
1/AA/1485:1488
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_6CZR_168
IL_67743.1
IL_4V72_0641/AA/1416:1419,
1/AA/1481:1484
Double sheared
Not in a motif group
homologous
IL_5J7L_062
IL_09705.10
IL_4V72_0651/AA/1439:1442,
1/AA/1460:1462
No text annotation
Not in a motif group
geometric
IL_4V9F_053
IL_46796.1
IL_4V72_0661/AA/1443:1448,
1/AA/1455:1459
No text annotation
Not in a motif group
IL_4V72_0671/BA/24:30,
1/BA/510:516
Triple sheared with non-canonical cWW
Not in a motif group
geometric
IL_7RQB_001
IL_66414.6
IL_4V72_0681/BA/36:37,
1/BA/442:444
Single bulged A
Not in a motif group
homologous
IL_7A0S_002
IL_37497.6
IL_4V72_0691/BA/43:44,
1/BA/434:436
Minor groove platform
Not in a motif group
homologous
IL_5J7L_247
IL_42622.4
IL_4V72_0701/BA/81:85,
1/BA/97:105
No text annotation
Not in a motif group
IL_4V72_0711/BA/183:184,
1/BA/212:214
Single stack bend
Not in a motif group
homologous
IL_5J7L_249
IL_76488.4
IL_4V72_0721/BA/188:194,
1/BA/201:208
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5J7L_250
IL_04346.7
IL_4V72_0731/BA/239:245,
1/BA/253:258
7x6 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_5J7L_251
IL_76042.2
IL_4V72_0741/BA/269:271,
1/BA/366:370
No text annotation
Not in a motif group
homologous
IL_5J7L_252
IL_47972.1
IL_4V72_0751/BA/274:281,
1/BA/359:363
No text annotation
Not in a motif group
IL_4V72_0761/BA/293:295,
1/BA/343:347
No text annotation
Not in a motif group
homologous
IL_5J7L_254
IL_69440.1
IL_4V72_0771/BA/481:484,
1/BA/496:509
No text annotation
Not in a motif group
geometric
IL_7RQB_014
IL_60992.6
IL_4V72_0781/BA/536:539,
1/BA/554:557
Double sheared
Not in a motif group
homologous
IL_5J7L_256
IL_09705.10
IL_4V72_0791/BA/564:567,
1/BA/575:577
No text annotation
Not in a motif group
geometric
IL_4P3T_002
IL_46796.1
IL_4V72_0801/BA/606:610,
1/BA/618:622
AAA cross-strand stack
Not in a motif group
homologous
IL_5J7L_258
IL_17136.1
IL_4V72_0811/BA/672:674,
1/BA/806:808
No text annotation
Not in a motif group
geometric
IL_7RQB_017
IL_86319.2
IL_4V72_0821/BA/674:678,
1/BA/799:806
tHW-tHW cross-strand stack
Not in a motif group
homologous
IL_5J7L_260
IL_17470.6
IL_4V72_0831/BA/697:698,
1/BA/763:765
Single bulged A
Not in a motif group
geometric
IL_7RQB_019
IL_37497.6
IL_4V72_0841/BA/702:703,
1/BA/728:730
Single bulged G
Not in a motif group
homologous
IL_7RQB_020
IL_00225.3
IL_4V72_0851/BA/703:707,
1/BA/724:728
Triple sheared
Not in a motif group
geometric
IL_4V88_474
IL_56467.8
IL_4V72_0861/BA/737:740,
1/BA/757:759
Major groove platform with extra pair
Not in a motif group
geometric
IL_7RQB_093
IL_63450.2
IL_4V72_0871/BA/775:777,
1/BA/787:791
Multiple bulged bases
Not in a motif group
geometric
IL_5J7L_265
IL_90991.6
IL_4V72_0881/BA/844:848,
1/BA/930:934
No text annotation
Not in a motif group
IL_4V72_0891/BA/849:851,
1/BA/926:929
No text annotation
Not in a motif group
geometric
IL_4N0T_004
IL_46796.1
IL_4V72_0901/BA/856:862,
1/BA/915:921
7x7 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_5J7L_270
IL_93830.3
IL_4V72_0911/BA/862:863,
1/BA/913:915
Single bulged G
Not in a motif group
homologous
IL_5J7L_271
IL_00225.3
IL_4V72_0921/BA/864:868,
1/BA/909:912
C-loop
Not in a motif group
homologous
IL_5J7L_272
IL_63596.6
IL_4V72_0931/BA/869:872,
1/BA/905:908
No text annotation
Not in a motif group
IL_4V72_0941/BA/875:879,
1/BA/898:902
Triple sheared
Not in a motif group
homologous
IL_5J7L_274
IL_56467.8
IL_4V72_0951/BA/880:881,
1/BA/895:897
No text annotation
Not in a motif group
homologous
IL_5J7L_275
NA
IL_4V72_0961/BA/994:996,
1/BA/1159:1160
Single bulged C
Not in a motif group
homologous
IL_7RQB_035
IL_61258.12
IL_4V72_0971/BA/998:1002,
1/BA/1153:1157
UAA/GAN
Not in a motif group
homologous
IL_7A0S_033
IL_89002.2
IL_4V72_0981/BA/1004:1011,
1/BA/1150:1151
SSU/LSU pseudoknot
Not in a motif group
homologous
IL_5J7L_278
IL_15861.7
IL_4V72_0991/BA/1011:1013,
1/BA/1149:1150
Single bulged U
Not in a motif group
geometric
IL_5J7L_279
IL_83039.16
IL_4V72_1001/BA/1018:1024,
1/BA/1140:1144
No text annotation
Not in a motif group
geometric
IL_4WF9_039
IL_57188.3
IL_4V72_1011/BA/1024:1030,
1/BA/1124:1140
No text annotation
Not in a motif group
geometric
IL_4WF9_040
IL_50715.1
IL_4V72_1021/BA/1031:1034,
1/BA/1121:1123
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_7RQB_041
IL_43275.1
IL_4V72_1031/BA/1038:1041,
1/BA/1114:1117
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_283
IL_30621.4
IL_4V72_1051/BA/1059:1062,
1/BA/1076:1079
No text annotation
Not in a motif group
homologous
IL_6PRV_001
IL_23544.2
IL_4V72_1061/BA/1087:1090,
1/BA/1101:1102
Major groove platform
Not in a motif group
geometric
IL_5J7L_320
IL_27635.3
IL_4V72_1071/BA/1196:1198,
1/BA/1247:1250
Isolated cWS basepair
Not in a motif group
homologous
IL_4WF9_044
IL_52767.4
IL_4V72_1081/BA/1202:1206,
1/BA/1240:1243
No text annotation
Not in a motif group
IL_4V72_1091/BA/1208:1215,
1/BA/1234:1238
Kink-turn
Not in a motif group
homologous
IL_7A0S_043
IL_70923.2
IL_4V72_1101/BA/1262:1269,
1/BA/2011:2017
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
homologous
IL_7RQB_049
IL_04346.7
IL_4V72_1111/BA/1310:1313,
1/BA/1603:1604
Major groove platform; stack outside cWW
Not in a motif group
homologous
IL_5J7L_290
IL_50694.2
IL_4V72_1121/BA/1319:1323,
1/BA/1331:1333
Major groove minor groove platform with tHH
Not in a motif group
homologous
IL_4WF9_050
IL_37712.2
IL_4V72_1131/BA/1351:1355,
1/BA/1376:1380
UAA/GAN
Not in a motif group
homologous
IL_7A0S_048
IL_89002.2
IL_4V72_1141/BA/1357:1361,
1/BA/1370:1374
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_293
IL_17136.1
IL_4V72_1151/BA/1415:1416,
1/BA/1582:1587
No text annotation
Not in a motif group
IL_4V72_1161/BA/1417:1421,
1/BA/1577:1581
UAA/GAN
Not in a motif group
homologous
IL_5J7L_295
IL_89002.2
IL_4V72_1171/BA/1432:1435,
1/BA/1557:1561
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5J7L_296
IL_55178.1
IL_4V72_1181/BA/1437:1440,
1/BA/1551:1555
No text annotation
Not in a motif group
IL_4V72_1191/BA/1468:1471,
1/BA/1520:1524
No text annotation
Not in a motif group
homologous
IL_5J7L_299
IL_68574.2
IL_4V72_1201/BA/1474:1478,
1/BA/1513:1517
tSH-tHW-tHS
Not in a motif group
homologous
IL_5J7L_300
IL_38862.1
IL_4V72_1211/BA/1481:1482,
1/BA/1507:1510
No text annotation
Not in a motif group
homologous
IL_5J7L_301
IL_67474.4
IL_4V72_1221/BA/1489:1491,
1/BA/1499:1500
Single bulged A
Not in a motif group
homologous
IL_5J7L_302
IL_37497.6
IL_4V72_1231/BA/1526:1529,
1/BA/1542:1546
UAA/GAN variation
Not in a motif group
homologous
IL_5J7L_303
IL_07235.1
IL_4V72_1241/BA/1651:1656,
1/BA/2004:2006
No text annotation
Not in a motif group
homologous
IL_5J7L_304
IL_12566.2
IL_4V72_1251/BA/1663:1665,
1/BA/1995:1997
Isolated tWW turn
Not in a motif group
homologous
IL_4WF9_063
IL_54997.7
IL_4V72_1261/BA/1666:1669,
1/BA/1993:1994
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_4LFB_027
IL_50694.2
IL_4V72_1271/BA/1669:1674,
1/BA/1990:1993
Intercalated tWH
Not in a motif group
homologous
IL_4WF9_065
IL_76273.1
IL_4V72_1281/BA/1686:1691,
1/BA/1696:1702
tSH-tSH-tHH-tHS
Not in a motif group
homologous
IL_5J7L_308
IL_65969.2
IL_4V72_1291/BA/1711:1718,
1/BA/1742:1747
No text annotation
Not in a motif group
IL_4V72_1301/BA/1720:1724,
1/BA/1736:1740
Triple sheared
Not in a motif group
homologous
IL_5J7L_310
IL_56467.8
IL_4V72_1311/BA/1727:1728,
1/BA/1731:1733
Single bulged C
Not in a motif group
homologous
IL_5J7L_311
IL_61258.12
IL_4V72_1321/BA/1770:1771,
1/BA/1980:1982
Single bulged A
Not in a motif group
homologous
IL_4WF9_068
IL_37497.6
IL_4V72_1331/BA/1798:1804,
1/BA/1813:1821
Kink-turn related
Not in a motif group
homologous
IL_5J7L_313
IL_17069.3
IL_4V72_1341/BA/1837:1840,
1/BA/1902:1903
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_314
IL_88739.3
IL_4V72_1351/BA/1841:1842,
1/BA/1898:1901
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
homologous
IL_5J7L_315
IL_16396.2
IL_4V72_1361/BA/1846:1849,
1/BA/1893:1894
Major groove minor groove platform; mini C-loop
Not in a motif group
homologous
IL_5J7L_316
IL_09061.8
IL_4V72_1371/BA/1864:1867,
1/BA/1874:1878
UAA/GAN related
Not in a motif group
homologous
IL_5J7L_317
IL_77691.2
IL_4V72_1381/BA/1933:1934,
1/BA/1964:1967
No text annotation
Not in a motif group
homologous
IL_4WF9_076
IL_59677.2
IL_4V72_1391/BA/1934:1945,
1/BA/1961:1964
No text annotation
Not in a motif group
geometric
IL_4V9F_071
IL_81589.2
IL_4V72_1401/BA/2050:2052,
1/BA/2617:2618
Major groove platform
Not in a motif group
homologous
IL_7RQB_078
IL_27635.3
IL_4V72_1411/BA/2054:2056,
1/BA/2612:2615
No text annotation
Not in a motif group
IL_4V72_1421/BA/2067:2069,
1/BA/2442:2443
Single bulged U
Not in a motif group
homologous
IL_7RQB_080
IL_83039.16
IL_4V72_1431/BA/2070:2071,
1/BA/2438:2441
Minor groove platform
Not in a motif group
homologous
IL_7RQB_081
IL_42622.4
IL_4V72_1441/BA/2081:2083,
1/BA/2236:2239
Isolated tHS basepair with bulges
Not in a motif group
homologous
IL_5J7L_325
IL_38958.7
IL_4V72_1451/BA/2085:2087,
1/BA/2232:2234
No text annotation
Not in a motif group
homologous
IL_7A0S_078
IL_86319.2
IL_4V72_1461/BA/2103:2106,
1/BA/2183:2186
Other IL
Not in a motif group
homologous
IL_5J7L_327
IL_21270.1
IL_4V72_1471/BA/2108:2110,
1/BA/2179:2181
No text annotation
Not in a motif group
IL_4V72_1511/BA/2202:2204,
1/BA/2220:2221
Single bulged U
Not in a motif group
homologous
IL_5J7L_331
IL_83039.16
IL_4V72_1521/BA/2350:2353,
1/BA/2364:2367
Double sheared
Not in a motif group
homologous
IL_7RQB_089
IL_09705.10
IL_4V72_1531/BA/2396:2399,
1/BA/2417:2420
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_1MFQ_004
IL_30621.4
IL_4V72_1541/BA/2401:2403,
1/BA/2414:2415
No text annotation
Not in a motif group
IL_4V72_1551/BA/2454:2455,
1/BA/2496:2498
Major groove platform
Not in a motif group
homologous
IL_7A0S_084
IL_27635.3
IL_4V72_1561/BA/2457:2459,
1/BA/2493:2494
Major groove platform
Not in a motif group
homologous
IL_4WF9_091
IL_27635.3
IL_4V72_1571/BA/2459:2461,
1/BA/2489:2493
Major groove minor groove platform with extra cWW
Not in a motif group
homologous
IL_5J7L_337
IL_92788.2
IL_4V72_1581/BA/2466:2470,
1/BA/2480:2484
Triple sheared
Not in a motif group
homologous
IL_5J7L_338
IL_56467.8
IL_4V72_1591/BA/2507:2508,
1/BA/2580:2582
Major groove platform
Not in a motif group
homologous
IL_7A0S_088
IL_76223.2
IL_4V72_1601/BA/2510:2512,
1/BA/2574:2578
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_4PKD_001
IL_90933.2
IL_4V72_1611/BA/2512:2514,
1/BA/2570:2574
No text annotation
Not in a motif group
IL_4V72_1621/BA