6ZCE Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6ZCE_001 | 1/A/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_6ZCE_002 | 1/A/70:81 | No text annotation Not in a motif group | ||
| HL_6ZCE_003 | 1/A/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_6ZCE_004 | 1/A/190:195 | No text annotation Not in a motif group | ||
| HL_6ZCE_005 | 1/A/243:250 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_6ZCE_006 | 1/A/276:279 | No text annotation Not in a motif group | homologous HL_4V88_192 HL_53837.1 | |
| HL_6ZCE_007 | 1/A/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_6ZCE_008 | 1/A/368:373 | No text annotation Not in a motif group | homologous HL_4V88_194 HL_50142.2 | |
| HL_6ZCE_009 | 1/A/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_6ZCE_010 | 1/A/414:419 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_6ZCE_011 | 1/A/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_6ZCE_012 | 1/A/491:496 | No text annotation Not in a motif group | homologous HL_4V88_198 HL_56691.2 | |
| HL_6ZCE_013 | 1/A/520:532 | No text annotation Not in a motif group | homologous HL_4V88_199 HL_06285.2 | |
| HL_6ZCE_014 | 1/A/569:574 | Other HL Not in a motif group | homologous HL_4V88_200 HL_53845.1 | |
| HL_6ZCE_016 | 1/A/764:772 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_6ZCE_017 | 1/A/777:783 | No text annotation Not in a motif group | homologous HL_4V88_204 HL_97896.2 | |
| HL_6ZCE_018 | 1/A/829:843 | No text annotation Not in a motif group | homologous HL_4V88_205 HL_96598.1 | |
| HL_6ZCE_019 | 1/A/900:909 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_6ZCE_020 | 1/A/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_6ZCE_021 | 1/A/997:1007 | No text annotation Not in a motif group | homologous HL_4V88_208 HL_12326.1 | |
| HL_6ZCE_022 | 1/A/1055:1064 | No text annotation Not in a motif group | ||
| HL_6ZCE_023 | 1/A/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_6ZCE_024 | 1/A/1121:1126 | GNRA Not in a motif group | homologous HL_4V88_211 HL_42097.1 | |
| HL_6ZCE_025 | 1/A/1188:1197 | No text annotation Not in a motif group | homologous HL_4V88_212 HL_73530.2 | |
| HL_6ZCE_026 | 1/A/1238:1247 | No text annotation Not in a motif group | homologous HL_4V88_213 HL_53597.2 | |
| HL_6ZCE_027 | 1/A/1296:1301 | GNRA Not in a motif group | homologous HL_4V88_214 HL_42097.1 | |
| HL_6ZCE_028 | 1/A/1309:1316 | No text annotation Not in a motif group | homologous HL_4V88_215 HL_71554.2 | |
| HL_6ZCE_029 | 1/A/1359:1364 | No text annotation Not in a motif group | ||
| HL_6ZCE_030 | 1/A/1396:1402 | No text annotation Not in a motif group | homologous HL_4V88_217 HL_42097.1 | |
| HL_6ZCE_031 | 1/A/1501:1506 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_6ZCE_032 | 1/A/1550:1561 | No text annotation Not in a motif group | homologous HL_4V88_219 HL_22554.1 | |
| HL_6ZCE_033 | 1/A/1594:1602 | No text annotation Not in a motif group | homologous HL_4V88_220 HL_60812.1 | |
| HL_6ZCE_035 | 1/A/1778:1783 | Other HL Not in a motif group | homologous HL_4V88_222 HL_16173.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6ZCE_015 | No text annotation | ||
| HL_6ZCE_034 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6ZCE_001 | 1/A/24:26, 1/A/600:601 | Single bulged C Not in a motif group | homologous IL_4V88_384 IL_61258.12 | |
| IL_6ZCE_002 | 1/A/35:37, 1/A/471:473 | UC cWW Not in a motif group | geometric IL_4V88_385 IL_51629.2 | |
| IL_6ZCE_003 | 1/A/37:41, 1/A/466:471 | No text annotation Not in a motif group | homologous IL_4V88_386 IL_41507.1 | |
| IL_6ZCE_005 | 1/A/50:52, 1/A/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_6ZCE_006 | 1/A/58:63, 1/A/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_6ZCE_007 | 1/A/64:69, 1/A/82:86 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_6ZCE_008 | 1/A/109:112, 1/A/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.2 | |
| IL_6ZCE_009 | 1/A/113:116, 1/A/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_6ZCE_010 | 1/A/117:122, 1/A/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_6ZCE_012 | 1/A/150:152, 1/A/162:164 | Isolated cWH basepair Not in a motif group | geometric IL_3W3S_003 IL_51629.2 | |
| IL_6ZCE_013 | 1/A/186:189, 1/A/196:199 | Double sheared Not in a motif group | homologous IL_4V88_396 IL_09705.9 | |
| IL_6ZCE_014 | 1/A/204:206, 1/A/259:263 | Major groove platform with extra cWW Not in a motif group | homologous IL_4V88_397 IL_05564.2 | |
| IL_6ZCE_015 | 1/A/206:208, 1/A/257:259 | No text annotation Not in a motif group | geometric IL_3TD0_001 IL_95997.1 | |
| IL_6ZCE_017 | 1/A/265:267, 1/A/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_6ZCE_018 | 1/A/270:273, 1/A/283:285 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_6ZCE_019 | 1/A/275:276, 1/A/279:281 | No text annotation Not in a motif group | ||
| IL_6ZCE_020 | 1/A/311:316, 1/A/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_6ZCE_022 | 1/A/363:365, 1/A/376:381 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_6ZCE_023 | 1/A/389:391, 1/A/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_6ZCE_024 | 1/A/411:413, 1/A/420:422 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_6ZCE_025 | 1/A/439:441, 1/A/463:464 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.13 | |
| IL_6ZCE_026 | 1/A/443:447, 1/A/460:461 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_6ZCE_027 | 1/A/447:448, 1/A/458:460 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_6ZCE_028 | 1/A/480:484, 1/A/503:508 | No text annotation Not in a motif group | geometric IL_5BTM_001 IL_05145.2 | |
| IL_6ZCE_029 | 1/A/517:518, 1/A/533:535 | Minor groove platform Not in a motif group | geometric IL_4LFB_054 IL_93353.1 | |
| IL_6ZCE_030 | 1/A/518:520, 1/A/532:533 | Minor groove platform Not in a motif group | geometric IL_4V88_412 IL_93353.1 | |
| IL_6ZCE_031 | 1/A/550:557, 1/A/587:588 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4V88_413 IL_15861.7 | |
| IL_6ZCE_032 | 1/A/557:559, 1/A/586:587 | Single bulged U Not in a motif group | homologous IL_4V88_414 IL_83039.13 | |
| IL_6ZCE_033 | 1/A/562:568, 1/A/575:583 | No text annotation Not in a motif group | homologous IL_4V88_415 IL_55871.1 | |
| IL_6ZCE_034 | 1/A/616:622, 1/A/1104:1105 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_6ZCE_035 | 1/A/624:626, 1/A/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_6ZCE_036 | 1/A/627:632, 1/A/967:972 | No text annotation Not in a motif group | ||
| IL_6ZCE_037 | 1/A/645:648, 1/A/686:689 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_5J7L_283 IL_30621.2 | |
| IL_6ZCE_038 | 1/A/652:654, 1/A/676:682 | No text annotation Not in a motif group | ||
| IL_6ZCE_045 | 1/A/868:870, 1/A/957:960 | Isolated non-canonical cWW with bulges Not in a motif group | geometric IL_3TD0_005 IL_82068.2 | |
| IL_6ZCE_046 | 1/A/871:874, 1/A/953:956 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_6ZCE_047 | 1/A/874:878, 1/A/950:953 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_6ZCE_048 | 1/A/885:888, 1/A/924:927 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_6ZCE_049 | 1/A/893:899, 1/A/910:919 | No text annotation Not in a motif group | ||
| IL_6ZCE_050 | 1/A/985:990, 1/A/1014:1016 | Other IL Not in a motif group | homologous IL_4V88_435 IL_22046.1 | |
| IL_6ZCE_051 | 1/A/990:994, 1/A/1010:1014 | tSH-tHW-tHS Not in a motif group | geometric IL_4V88_436 IL_17136.1 | |
| IL_6ZCE_052 | 1/A/1034:1037, 1/A/1094:1101 | No text annotation Not in a motif group | ||
| IL_6ZCE_053 | 1/A/1041:1044, 1/A/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.2 | |
| IL_6ZCE_054 | 1/A/1051:1053, 1/A/1066:1067 | Single bulged U Not in a motif group | homologous IL_4V88_439 IL_83039.13 | |
| IL_6ZCE_055 | 1/A/1111:1118, 1/A/1129:1134 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4V88_440 IL_24606.2 | |
| IL_6ZCE_056 | 1/A/1146:1147, 1/A/1630:1632 | Single bulged A Not in a motif group | homologous IL_4V88_441 IL_37497.2 | |
| IL_6ZCE_057 | 1/A/1149:1151, 1/A/1627:1628 | Single bulged G Not in a motif group | homologous IL_4V88_442 IL_00225.2 | |
| IL_6ZCE_058 | 1/A/1157:1160, 1/A/1617:1621 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_6ZCE_059 | 1/A/1173:1175, 1/A/1464:1466 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_6ZCE_060 | 1/A/1178:1179, 1/A/1459:1461 | Minor groove platform Not in a motif group | homologous IL_4V88_445 IL_42622.2 | |
| IL_6ZCE_061 | 1/A/1213:1215, 1/A/1448:1450 | No text annotation Not in a motif group | homologous IL_4V88_446 IL_95997.1 | |
| IL_6ZCE_062 | 1/A/1224:1230, 1/A/1257:1259 | No text annotation Not in a motif group | ||
| IL_6ZCE_063 | 1/A/1230:1233, 1/A/1252:1257 | No text annotation Not in a motif group | ||
| IL_6ZCE_064 | 1/A/1234:1236, 1/A/1249:1251 | No text annotation Not in a motif group | homologous IL_4V88_448 IL_10023.1 | |
| IL_6ZCE_065 | 1/A/1268:1270, 1/A/1440:1441 | Single bulged U Not in a motif group | homologous IL_4V88_449 IL_83039.13 | |
| IL_6ZCE_066 | 1/A/1272:1276, 1/A/1436:1438 | Isolated cWS basepair Not in a motif group | geometric IL_4V88_450 IL_76319.2 | |
| IL_6ZCE_067 | 1/A/1276:1278, 1/A/1430:1436 | Minor groove platform with extra cWW Not in a motif group | homologous IL_4V88_451 IL_92788.2 | |
| IL_6ZCE_068 | 1/A/1280:1281, 1/A/1426:1428 | Single bulged A Not in a motif group | homologous IL_4V88_452 IL_37497.2 | |
| IL_6ZCE_069 | 1/A/1290:1292, 1/A/1323:1325 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_453 IL_51629.2 | |
| IL_6ZCE_070 | 1/A/1306:1308, 1/A/1317:1318 | Minor groove platform Not in a motif group | geometric IL_2QWY_009 IL_42622.2 | |
| IL_6ZCE_071 | 1/A/1339:1342, 1/A/1383:1385 | No text annotation Not in a motif group | homologous IL_4V88_455 IL_10023.1 | |
| IL_6ZCE_072 | 1/A/1345:1348, 1/A/1377:1380 | Minor groove platform Not in a motif group | homologous IL_4V88_456 IL_76458.1 | |
| IL_6ZCE_073 | 1/A/1352:1354, 1/A/1369:1373 | No text annotation Not in a motif group | homologous IL_4V88_457 IL_95997.1 | |
| IL_6ZCE_074 | 1/A/1389:1391, 1/A/1407:1412 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_458 IL_58032.1 | |
| IL_6ZCE_075 | 1/A/1480:1487, 1/A/1519:1527 | No text annotation Not in a motif group | homologous IL_4V88_459 IL_10447.1 | |
| IL_6ZCE_076 | 1/A/1488:1494, 1/A/1513:1518 | No text annotation Not in a motif group | homologous IL_4V88_460 IL_75461.4 | |
| IL_6ZCE_077 | 1/A/1495:1498, 1/A/1509:1512 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_461 IL_30621.2 | |
| IL_6ZCE_078 | 1/A/1540:1545, 1/A/1566:1571 | No text annotation Not in a motif group | homologous IL_4V88_462 IL_19954.2 | |
| IL_6ZCE_079 | 1/A/1636:1638, 1/A/1764:1767 | No text annotation Not in a motif group | geometric IL_5J7L_058 IL_36143.3 | |
| IL_6ZCE_080 | 1/A/1638:1641, 1/A/1760:1764 | No text annotation Not in a motif group | ||
| IL_6ZCE_081 | 1/A/1642:1644, 1/A/1757:1759 | No text annotation Not in a motif group | geometric IL_7A0S_014 IL_95997.1 | |
| IL_6ZCE_082 | 1/A/1644:1647, 1/A/1753:1757 | No text annotation Not in a motif group | ||
| IL_6ZCE_083 | 1/A/1650:1652, 1/A/1748:1750 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_6ZCE_084 | 1/A/1653:1656, 1/A/1744:1747 | Double sheared Not in a motif group | geometric IL_4KZD_002 IL_09705.9 | |
| IL_6ZCE_085 | 1/A/1656:1658, 1/A/1743:1744 | Single bulged U Not in a motif group | homologous IL_4V88_469 IL_83039.13 | |
| IL_6ZCE_086 | 1/A/1665:1667, 1/A/1734:1736 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_6ZCE_087 | 1/A/1669:1672, 1/A/1729:1732 | Double sheared Not in a motif group | homologous IL_4V88_471 IL_09705.9 | |
| IL_6ZCE_088 | 1/A/1672:1674, 1/A/1727:1729 | No text annotation Not in a motif group | geometric IL_3D0U_006 IL_95997.1 | |
| IL_6ZCE_089 | 1/A/1675:1678, 1/A/1723:1726 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_473 IL_30621.2 | |
| IL_6ZCE_090 | 1/A/1678:1682, 1/A/1719:1723 | Triple sheared Not in a motif group | geometric IL_4V88_474 IL_56467.8 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_6ZCE_004 | No text annotation | ||
| IL_6ZCE_011 | tWH-tWH-tHW-tHW | ||
| IL_6ZCE_016 | Isolated tHS basepair with bulges | ||
| IL_6ZCE_021 | No text annotation | ||
| IL_6ZCE_039 | No text annotation | ||
| IL_6ZCE_040 | Major groove minor groove platform; mini C-loop | ||
| IL_6ZCE_041 | No text annotation | ||
| IL_6ZCE_042 | No text annotation | ||
| IL_6ZCE_043 | No text annotation | ||
| IL_6ZCE_044 | Major groove platform; stack outside cWW | ||
| IL_6ZCE_091 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6ZCE_001 | 1/A/41:42, 1/A/433:439, 1/A/464:466 | No text annotation Not in a motif group | ||
| J3_6ZCE_002 | 1/A/633:635, 1/A/861:865, 1/A/965:966 | No text annotation Not in a motif group | ||
| J3_6ZCE_004 | 1/A/881:884, 1/A/928:936, 1/A/943:947 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_6ZCE_005 | 1/A/1037:1039, 1/A/1079:1083, 1/A/1090:1094 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_6ZCE_006 | 1/A/1161:1164, 1/A/1581:1587, 1/A/1609:1616 | No text annotation Not in a motif group | ||
| J3_6ZCE_007 | 1/A/1168:1171, 1/A/1468:1470, 1/A/1574:1577 | No text annotation Not in a motif group | homologous J3_4V88_036 NA | |
| J3_6ZCE_008 | 1/A/1180:1187, 1/A/1198:1209, 1/A/1454:1458 | No text annotation Not in a motif group | ||
| J3_6ZCE_009 | 1/A/1215:1220, 1/A/1263:1267, 1/A/1442:1448 | No text annotation Not in a motif group | ||
| J3_6ZCE_010 | 1/A/1283:1288, 1/A/1327:1332, 1/A/1419:1424 | No text annotation Not in a motif group | homologous J3_4V88_039 NA | |
| J3_6ZCE_011 | 1/A/1293:1294, 1/A/1303:1306, 1/A/1318:1322 | No text annotation Not in a motif group | ||
| J3_6ZCE_012 | 1/A/1336:1338, 1/A/1386:1389, 1/A/1412:1415 | No text annotation Not in a motif group | homologous J3_8C3A_043 NA | |
| J3_6ZCE_013 | 1/A/1470:1474, 1/A/1533:1540, 1/A/1571:1574 | No text annotation Not in a motif group | homologous J3_4V88_041 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6ZCE_003 | No text annotation |
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