7V2N Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_7V2N_001 | 1/A/12:24 | No text annotation Not in a motif group | ||
| HL_7V2N_003 | 1/A/151:160 | No text annotation Not in a motif group | ||
| HL_7V2N_004 | 1/A/187:192 | No text annotation Not in a motif group | homologous HL_4LFB_004 HL_10278.1 | |
| HL_7V2N_005 | 1/A/208:212 | No text annotation Not in a motif group | homologous HL_4LFB_005 HL_56691.2 | |
| HL_7V2N_006 | 1/A/255:263 | No text annotation Not in a motif group | homologous HL_4LFB_006 HL_69023.2 | |
| HL_7V2N_007 | 1/A/292:297 | GNRA Not in a motif group | homologous HL_4LFB_007 HL_42097.1 | |
| HL_7V2N_008 | 1/A/316:329 | No text annotation Not in a motif group | homologous HL_4LFB_008 HL_81205.2 | |
| HL_7V2N_010 | 1/A/375:380 | GNRA Not in a motif group | homologous HL_4LFB_010 HL_42097.1 | |
| HL_7V2N_011 | 1/A/415:420 | UNCG Not in a motif group | homologous HL_4LFB_011 HL_03562.2 | |
| HL_7V2N_012 | 1/A/453:459 | No text annotation Not in a motif group | homologous HL_4LFB_012 HL_43656.2 | |
| HL_7V2N_013 | 1/A/506:511 | No text annotation Not in a motif group | geometric HL_4WF9_003 HL_75407.1 | |
| HL_7V2N_014 | 1/A/601:607 | No text annotation Not in a motif group | homologous HL_4LFB_014 HL_26881.1 | |
| HL_7V2N_015 | 1/A/673:682 | No text annotation Not in a motif group | homologous HL_4LFB_015 HL_12326.1 | |
| HL_7V2N_016 | 1/A/710:715 | Other HL Not in a motif group | homologous HL_4LFB_016 HL_87030.2 | |
| HL_7V2N_018 | 1/A/822:826 | No text annotation Not in a motif group | homologous HL_4LFB_018 HL_38927.2 | |
| HL_7V2N_019 | 1/A/840:845 | GNRA Not in a motif group | homologous HL_4LFB_019 HL_42097.1 | |
| HL_7V2N_020 | 1/A/875:880 | GNRA Not in a motif group | homologous HL_4LFB_020 HL_42097.1 | |
| HL_7V2N_021 | 1/A/941:950 | No text annotation Not in a motif group | homologous HL_4LFB_021 NA | |
| HL_7V2N_023 | 1/A/1059:1064 | GNRA Not in a motif group | homologous HL_4LFB_024 HL_42097.1 | |
| HL_7V2N_024 | 1/A/1072:1079 | No text annotation Not in a motif group | homologous HL_4LFB_025 HL_71554.2 | |
| HL_7V2N_025 | 1/A/1117:1123 | No text annotation Not in a motif group | homologous HL_6CZR_097 NA | |
| HL_7V2N_026 | 1/A/1148:1153 | GNRA Not in a motif group | homologous HL_4LFB_027 HL_42097.1 | |
| HL_7V2N_027 | 1/A/1247:1252 | GNRA Not in a motif group | homologous HL_5J7L_027 HL_42097.1 | |
| HL_7V2N_028 | 1/A/1296:1305 | No text annotation Not in a motif group | homologous HL_4LFB_029 HL_89380.2 | |
| HL_7V2N_030 | 1/A/1493:1498 | No text annotation Not in a motif group | geometric HL_4ZLD_001 HL_89098.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_7V2N_002 | No text annotation | ||
| HL_7V2N_009 | UNCG | ||
| HL_7V2N_017 | No text annotation | ||
| HL_7V2N_022 | No text annotation | ||
| HL_7V2N_029 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_7V2N_001 | 1/A/31:33, 1/A/536:537 | Single bulged G Not in a motif group | homologous IL_6CZR_113 IL_00225.2 | |
| IL_7V2N_002 | 1/A/45:46, 1/A/392:394 | Single bulged A Not in a motif group | homologous IL_4LFB_002 IL_37497.2 | |
| IL_7V2N_003 | 1/A/48:53, 1/A/355:357 | No text annotation Not in a motif group | geometric IL_4LFB_003 IL_11178.1 | |
| IL_7V2N_004 | 1/A/55:58, 1/A/351:353 | Minor groove platform with extra cWW Not in a motif group | geometric IL_5J7L_006 IL_65006.1 | |
| IL_7V2N_005 | 1/A/64:67, 1/A/97:98 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_005 IL_76389.1 | |
| IL_7V2N_006 | 1/A/68:70, 1/A/94:96 | No text annotation Not in a motif group | homologous IL_4LFB_006 IL_95997.1 | |
| IL_7V2N_007 | 1/A/123:126, 1/A/227:228 | Multiple bulged bases Not in a motif group | homologous IL_4LFB_007 IL_16396.2 | |
| IL_7V2N_008 | 1/A/127:134, 1/A/220:226 | No text annotation Not in a motif group | ||
| IL_7V2N_009 | 1/A/143:148, 1/A/163:169 | No text annotation Not in a motif group | ||
| IL_7V2N_010 | 1/A/181:183, 1/A/196:198 | No text annotation Not in a motif group | homologous IL_4LFB_010 IL_95997.1 | |
| IL_7V2N_011 | 1/A/238:243, 1/A/273:280 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4LFB_011 IL_45067.2 | |
| IL_7V2N_012 | 1/A/245:248, 1/A/270:271 | No text annotation Not in a motif group | homologous IL_4LFB_012 IL_48100.2 | |
| IL_7V2N_013 | 1/A/288:289, 1/A/300:304 | C-loop Not in a motif group | homologous IL_4LFB_013 IL_37712.2 | |
| IL_7V2N_014 | 1/A/363:365, 1/A/388:389 | Single bulged U Not in a motif group | geometric IL_5TBW_093 IL_83039.13 | |
| IL_7V2N_015 | 1/A/365:372, 1/A/383:388 | No text annotation Not in a motif group | ||
| IL_7V2N_016 | 1/A/403:405, 1/A/429:431 | CC cWW Not in a motif group | geometric IL_4E59_001 IL_95997.1 | |
| IL_7V2N_017 | 1/A/405:412, 1/A/423:429 | No text annotation Not in a motif group | homologous IL_4LFB_017 IL_28026.1 | |
| IL_7V2N_018 | 1/A/487:496, 1/A/523:526 | No text annotation Not in a motif group | ||
| IL_7V2N_019 | 1/A/499:505, 1/A/512:520 | No text annotation Not in a motif group | ||
| IL_7V2N_020 | 1/A/553:559, 1/A/858:859 | No text annotation Not in a motif group | homologous IL_4LFB_022 IL_69996.1 | |
| IL_7V2N_021 | 1/A/564:568, 1/A/741:745 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_023 IL_17136.1 | |
| IL_7V2N_022 | 1/A/578:580, 1/A/628:629 | Major groove platform Not in a motif group | homologous IL_4LFB_024 IL_27635.1 | |
| IL_7V2N_023 | 1/A/581:582, 1/A/624:627 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_029 IL_09061.6 | |
| IL_7V2N_024 | 1/A/589:596, 1/A/612:617 | No text annotation Not in a motif group | homologous IL_4LFB_026 IL_78349.1 | |
| IL_7V2N_025 | 1/A/638:639, 1/A/735:738 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4LFB_027 IL_50694.2 | |
| IL_7V2N_026 | 1/A/641:642, 1/A/731:733 | Major groove platform Not in a motif group | homologous IL_4LFB_028 IL_27635.1 | |
| IL_7V2N_027 | 1/A/646:650, 1/A/724:727 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4LFB_029 IL_71110.1 | |
| IL_7V2N_028 | 1/A/657:662, 1/A/696:701 | No text annotation Not in a motif group | homologous IL_4LFB_030 IL_04668.1 | |
| IL_7V2N_029 | 1/A/667:672, 1/A/683:691 | No text annotation Not in a motif group | homologous IL_6CZR_143 IL_37722.1 | |
| IL_7V2N_030 | 1/A/758:762, 1/A/788:789 | Left turn Not in a motif group | homologous IL_5J7L_036 IL_29346.1 | |
| IL_7V2N_031 | 1/A/763:767, 1/A/783:787 | tSH-tHW-tHS Not in a motif group | homologous IL_4LFB_033 IL_17136.1 | |
| IL_7V2N_032 | 1/A/865:872, 1/A/883:888 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | homologous IL_4LFB_034 IL_24606.2 | |
| IL_7V2N_033 | 1/A/899:902, 1/A/1375:1379 | No text annotation Not in a motif group | ||
| IL_7V2N_034 | 1/A/903:905, 1/A/1373:1374 | No text annotation Not in a motif group | ||
| IL_7V2N_035 | 1/A/911:913, 1/A/1363:1367 | Minor groove platform Not in a motif group | homologous IL_5J7L_041 IL_47078.1 | |
| IL_7V2N_036 | 1/A/931:932, 1/A/1208:1210 | Minor groove platform Not in a motif group | homologous IL_4LFB_038 IL_42622.2 | |
| IL_7V2N_037 | 1/A/971:975, 1/A/1027:1028 | No text annotation Not in a motif group | ||
| IL_7V2N_038 | 1/A/1031:1033, 1/A/1190:1191 | Single bulged U Not in a motif group | homologous IL_5J7L_046 IL_83039.13 | |
| IL_7V2N_039 | 1/A/1035:1039, 1/A/1186:1188 | Isolated cWS basepair Not in a motif group | homologous IL_4LFB_044 IL_76319.2 | |
| IL_7V2N_040 | 1/A/1040:1041, 1/A/1181:1185 | Minor groove platform Not in a motif group | homologous IL_4LFB_045 IL_93353.1 | |
| IL_7V2N_041 | 1/A/1043:1044, 1/A/1177:1179 | Single bulged U Not in a motif group | homologous IL_4LFB_046 IL_83039.13 | |
| IL_7V2N_042 | 1/A/1044:1046, 1/A/1175:1177 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_7V2N_043 | 1/A/1107:1111, 1/A/1127:1132 | No text annotation Not in a motif group | homologous IL_5J7L_051 IL_93211.1 | |
| IL_7V2N_044 | 1/A/1112:1115, 1/A/1125:1126 | Minor groove platform Not in a motif group | homologous IL_5J7L_052 IL_15052.1 | |
| IL_7V2N_045 | 1/A/1229:1235, 1/A/1266:1272 | No text annotation Not in a motif group | homologous IL_4LFB_051 IL_09129.1 | |
| IL_7V2N_046 | 1/A/1237:1240, 1/A/1259:1264 | No text annotation Not in a motif group | homologous IL_5J7L_055 IL_75461.4 | |
| IL_7V2N_047 | 1/A/1241:1242, 1/A/1256:1258 | Not an internal loop Not in a motif group | geometric IL_4LFB_053 IL_93353.1 | |
| IL_7V2N_048 | 1/A/1242:1244, 1/A/1255:1256 | Minor groove platform Not in a motif group | homologous IL_4LFB_054 IL_93353.1 | |
| IL_7V2N_049 | 1/A/1285:1290, 1/A/1311:1316 | No text annotation Not in a motif group | homologous IL_4LFB_055 IL_19954.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_7V2N_001 | 1/A/47:48, 1/A/357:363, 1/A/389:391 | No text annotation Not in a motif group | homologous J3_5J7L_001 NA | |
| J3_7V2N_002 | 1/A/570:572, 1/A/635:638, 1/A/738:739 | No text annotation Not in a motif group | ||
| J3_7V2N_003 | 1/A/656:657, 1/A/701:709, 1/A/716:718 | No text annotation Not in a motif group | ||
| J3_7V2N_004 | 1/A/810:813, 1/A/835:839, 1/A/846:852 | No text annotation Not in a motif group | homologous J3_4LFB_001 NA | |
| J3_7V2N_005 | 1/A/920:924, 1/A/1217:1219, 1/A/1319:1323 | No text annotation Not in a motif group | ||
| J3_7V2N_006 | 1/A/932:940, 1/A/951:962, 1/A/1203:1208 | No text annotation Not in a motif group | ||
| J3_7V2N_007 | 1/A/968:971, 1/A/1028:1030, 1/A/1192:1197 | No text annotation Not in a motif group | ||
| J3_7V2N_008 | 1/A/1046:1051, 1/A/1090:1096, 1/A/1169:1175 | No text annotation Not in a motif group | ||
| J3_7V2N_009 | 1/A/1056:1057, 1/A/1066:1070, 1/A/1081:1085 | No text annotation Not in a motif group | homologous J3_6CZR_024 NA | |
| J3_7V2N_010 | 1/A/1099:1101, 1/A/1138:1144, 1/A/1157:1166 | No text annotation Not in a motif group | ||
| J3_7V2N_011 | 1/A/1219:1223, 1/A/1278:1285, 1/A/1316:1319 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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