1I97 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1I97_001 | 1/A/12:22 | No text annotation | homologous HL_5J7L_001 HL_89881.5 | |
| HL_1I97_002 | 1/A/78:84 | No text annotation | ||
| HL_1I97_003 | 1/A/152:157 | GNRA | homologous HL_4LFB_003 HL_37824.7 | |
| HL_1I97_004 | 1/A/186:191 | No text annotation | homologous HL_6CZR_075 NA | |
| HL_1I97_005 | 1/A/206:212 | No text annotation | ||
| HL_1I97_043 | 1/A/254:262 | GNRA related | homologous HL_6CZR_077 NA | |
| HL_1I97_007 | 1/A/291:296 | GNRA | homologous HL_4LFB_007 HL_37824.7 | |
| HL_1I97_008 | 1/A/315:328 | No text annotation | homologous HL_4LFB_008 HL_81205.3 | |
| HL_1I97_044 | 1/A/337:342 | UNCG | homologous HL_6CZR_080 NA | |
| HL_1I97_010 | 1/A/374:379 | GNRA | geometric HL_5J7L_191 HL_37824.7 | |
| HL_1I97_011 | 1/A/414:419 | No text annotation | homologous HL_6CZR_082 NA | |
| HL_1I97_012 | 1/A/452:458 | GNRA | homologous HL_6CZR_083 NA | |
| HL_1I97_036 | 1/A/490:507 | No text annotation | ||
| HL_1I97_013 | 1/A/505:510 | GNRA variation | geometric HL_4LFB_033 HL_37824.7 | |
| HL_1I97_014 | 1/A/600:606 | No text annotation | homologous HL_4LFB_014 HL_10453.3 | |
| HL_1I97_037 | 1/A/664:692 | No text annotation | ||
| HL_1I97_015 | 1/A/672:681 | No text annotation | geometric HL_5J7L_015 HL_75293.5 | |
| HL_1I97_045 | 1/A/709:714 | GNRA | homologous HL_5J7L_016 HL_37824.7 | |
| HL_1I97_017 | 1/A/769:779 | No text annotation | homologous HL_4LFB_017 HL_75293.5 | |
| HL_1I97_046 | 1/A/821:825 | Mini UNCG | homologous HL_6CZR_089 NA | |
| HL_1I97_019 | 1/A/874:879 | GNRA | homologous HL_4LFB_020 HL_37824.7 | |
| HL_1I97_020 | 1/A/940:949 | No text annotation | homologous HL_4LFB_021 HL_50779.4 | |
| HL_1I97_047 | 1/A/987:998 | No text annotation | homologous HL_5J7L_216 HL_78284.1 | |
| HL_1I97_021 | 1/A/990:995 | GNRA | homologous HL_4LFB_022 HL_37824.7 | |
| HL_1I97_022 | 1/A/1008:1013 | No text annotation | homologous HL_4LFB_023 NA | |
| HL_1I97_023 | 1/A/1058:1063 | GNRA | geometric HL_5J7L_027 HL_37824.7 | |
| HL_1I97_024 | 1/A/1071:1078 | T-loop related | homologous HL_5J7L_024 HL_77436.5 | |
| HL_1I97_025 | 1/A/1114:1124 | No text annotation | ||
| HL_1I97_040 | 1/A/1145:1154 | No text annotation | geometric HL_8C3A_054 NA | |
| HL_1I97_027 | 1/A/1246:1251 | GNRA | homologous HL_4LFB_028 HL_37824.7 | |
| HL_1I97_028 | 1/A/1295:1304 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_02887.3 | |
| HL_1I97_048 | 1/A/1337:1348 | No text annotation | homologous HL_5J7L_029 HL_06226.4 | |
| HL_1I97_030 | 1/A/1429:1434 | UNCG | homologous HL_5J7L_030 HL_34617.5 | |
| HL_1I97_031 | 1/A/1492:1497 | GNRA | geometric HL_6UFH_002 HL_37824.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1I97_032 | No text annotation | ||
| HL_1I97_033 | No text annotation | ||
| HL_1I97_034 | No text annotation | ||
| HL_1I97_006 | No text annotation | ||
| HL_1I97_009 | No text annotation | ||
| HL_1I97_035 | T-loop with 2 bulged bases not stacked | ||
| HL_1I97_016 | GNRA with extra cWW | ||
| HL_1I97_018 | No text annotation | ||
| HL_1I97_038 | No text annotation | ||
| HL_1I97_039 | No text annotation | ||
| HL_1I97_026 | No text annotation | ||
| HL_1I97_041 | No text annotation | ||
| HL_1I97_029 | No text annotation | ||
| HL_1I97_042 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1I97_113 | 1/A/28:32, 1/A/535:538 | No text annotation | geometric IL_8BH9_001 IL_51479.1 | |
| IL_1I97_002 | 1/A/30:32, 1/A/535:536 | Single bulged G | geometric IL_6CZR_113 NA | |
| IL_1I97_003 | 1/A/44:45, 1/A/391:393 | Single bulged A | homologous IL_4LFB_002 IL_31462.5 | |
| IL_1I97_114 | 1/A/63:66, 1/A/96:97 | Multiple bulged bases | homologous IL_6CZR_117 NA | |
| IL_1I97_005 | 1/A/67:69, 1/A/93:95 | Isolated non-canonical cWW pair | homologous IL_4LFB_006 IL_87907.2 | |
| IL_1I97_009 | 1/A/122:125, 1/A/226:227 | Multiple bulged bases | homologous IL_6CZR_119 NA | |
| IL_1I97_010 | 1/A/126:131, 1/A/221:225 | No text annotation | ||
| IL_1I97_088 | 1/A/126:133, 1/A/219:225 | No text annotation | ||
| IL_1I97_115 | 1/A/142:147, 1/A/162:168 | tWH-tWH-tHW-tHW | homologous IL_4LFB_009 IL_12745.1 | |
| IL_1I97_014 | 1/A/180:182, 1/A/195:197 | Isolated non-canonical cWW pair | homologous IL_4LFB_010 IL_87907.2 | |
| IL_1I97_016 | 1/A/237:244, 1/A/270:279 | No text annotation | ||
| IL_1I97_116 | 1/A/244:247, 1/A/269:270 | No text annotation | homologous IL_4LFB_012 IL_47074.2 | |
| IL_1I97_117 | 1/A/287:289, 1/A/298:303 | No text annotation | ||
| IL_1I97_020 | 1/A/362:364, 1/A/387:388 | Single bulged U | homologous IL_5J7L_017 IL_89505.4 | |
| IL_1I97_021 | 1/A/366:370, 1/A/384:385 | C-loop | homologous IL_4LFB_015 IL_03109.3 | |
| IL_1I97_022 | 1/A/370:371, 1/A/382:384 | Single bulged G | geometric IL_4LFB_016 IL_00225.13 | |
| IL_1I97_118 | 1/A/404:411, 1/A/422:428 | No text annotation | homologous IL_4LFB_017 IL_28026.3 | |
| IL_1I97_095 | 1/A/438:444, 1/A/467:474 | No text annotation | ||
| IL_1I97_025 | 1/A/440:444, 1/A/467:472 | 6x5 Sarcin-Ricin; G-bulge | geometric IL_6CZR_130 NA | |
| IL_1I97_026 | 1/A/444:449, 1/A/461:467 | No text annotation | homologous IL_4LFB_019 IL_31561.1 | |
| IL_1I97_027 | 1/A/487:494, 1/A/523:524 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_41203.4 | |
| IL_1I97_028 | 1/A/497:505, 1/A/510:520 | No text annotation | ||
| IL_1I97_119 | 1/A/563:567, 1/A/740:744 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_17136.7 | |
| IL_1I97_033 | 1/A/577:579, 1/A/627:628 | Major groove platform | geometric IL_4LFB_024 IL_48076.6 | |
| IL_1I97_098 | 1/A/577:581, 1/A/623:628 | No text annotation | ||
| IL_1I97_034 | 1/A/580:581, 1/A/623:626 | Major groove minor groove platform; mini C-loop | homologous IL_6CZR_137 NA | |
| IL_1I97_120 | 1/A/588:595, 1/A/611:616 | No text annotation | homologous IL_4LFB_026 IL_78349.3 | |
| IL_1I97_036 | 1/A/637:638, 1/A/734:737 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_50694.7 | |
| IL_1I97_037 | 1/A/640:641, 1/A/730:732 | Major groove platform | homologous IL_4LFB_028 IL_48076.6 | |
| IL_1I97_121 | 1/A/645:649, 1/A/723:726 | Tandem non-canonical cWW pairs | homologous IL_6CZR_141 NA | |
| IL_1I97_041 | 1/A/666:672, 1/A/681:690 | No text annotation | ||
| IL_1I97_042 | 1/A/757:761, 1/A/787:788 | Left turn | homologous IL_5J7L_036 IL_29346.2 | |
| IL_1I97_043 | 1/A/762:766, 1/A/782:786 | tSH-tHW-tHS | homologous IL_5J7L_037 IL_17136.7 | |
| IL_1I97_045 | 1/A/809:812, 1/A/834:851 | No text annotation | ||
| IL_1I97_122 | 1/A/899:900, 1/A/1375:1377 | Single bulged A | homologous IL_4LFB_035 IL_31462.5 | |
| IL_1I97_049 | 1/A/902:904, 1/A/1372:1373 | Single bulged G | homologous IL_5J7L_040 IL_00225.13 | |
| IL_1I97_051 | 1/A/910:913, 1/A/1361:1366 | No text annotation | homologous IL_6CZR_149 NA | |
| IL_1I97_054 | 1/A/930:931, 1/A/1207:1209 | Multiple bulged bases | geometric IL_5M0H_004 IL_82107.4 | |
| IL_1I97_103 | 1/A/980:984, 1/A/1001:1020 | No text annotation | ||
| IL_1I97_057 | 1/A/1030:1032, 1/A/1189:1190 | Single bulged U | homologous IL_5J7L_046 IL_89505.4 | |
| IL_1I97_123 | 1/A/1034:1038, 1/A/1185:1187 | Isolated cWS basepair | homologous IL_4LFB_044 IL_76319.5 | |
| IL_1I97_059 | 1/A/1039:1040, 1/A/1180:1184 | Minor groove platform | homologous IL_4LFB_045 IL_95583.2 | |
| IL_1I97_060 | 1/A/1042:1045, 1/A/1174:1178 | No text annotation | ||
| IL_1I97_124 | 1/A/1055:1068, 1/A/1081:1084 | No text annotation | ||
| IL_1I97_061 | 1/A/1103:1110, 1/A/1125:1134 | No text annotation | ||
| IL_1I97_125 | 1/A/1106:1114, 1/A/1124:1131 | No text annotation | ||
| IL_1I97_062 | 1/A/1110:1114, 1/A/1124:1125 | No text annotation | ||
| IL_1I97_064 | 1/A/1227:1234, 1/A/1265:1272 | No text annotation | ||
| IL_1I97_126 | 1/A/1228:1241, 1/A/1255:1271 | No text annotation | ||
| IL_1I97_065 | 1/A/1235:1240, 1/A/1257:1264 | No text annotation | ||
| IL_1I97_066 | 1/A/1240:1241, 1/A/1255:1257 | Not an internal loop | geometric IL_4LFB_053 NA | |
| IL_1I97_067 | 1/A/1241:1243, 1/A/1254:1255 | Minor groove platform | homologous IL_4LFB_054 IL_51454.2 | |
| IL_1I97_068 | 1/A/1284:1289, 1/A/1310:1315 | No text annotation | homologous IL_4LFB_055 IL_85536.2 | |
| IL_1I97_071 | 1/A/1383:1386, 1/A/1474:1478 | No text annotation | geometric IL_7VYX_002 IL_85033.2 | |
| IL_1I97_072 | 1/A/1387:1389, 1/A/1471:1473 | Isolated non-canonical cWW pair | geometric IL_1ZH5_001 IL_87907.2 | |
| IL_1I97_110 | 1/A/1387:1391, 1/A/1468:1473 | No text annotation | homologous IL_5J7L_060 NA | |
| IL_1I97_073 | 1/A/1389:1391, 1/A/1468:1471 | No text annotation | homologous IL_5J7L_364 IL_90351.1 | |
| IL_1I97_127 | 1/A/1394:1396, 1/A/1463:1465 | Isolated non-canonical cWW pair | homologous IL_4LFB_059 IL_87907.2 | |
| IL_1I97_076 | 1/A/1397:1403, 1/A/1456:1462 | No text annotation | ||
| IL_1I97_128 | 1/A/1397:1407, 1/A/1452:1462 | No text annotation | ||
| IL_1I97_080 | 1/A/1413:1417, 1/A/1443:1446 | UAA/GAN variation | geometric IL_4LFB_062 IL_77691.5 | |
| IL_1I97_129 | 1/A/1417:1419, 1/A/1441:1443 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_87907.2 | |
| IL_1I97_082 | 1/A/1422:1427, 1/A/1436:1438 | No text annotation | homologous IL_4LFB_064 IL_49061.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1I97_001 | Isolated non-canonical cWW pair | ||
| IL_1I97_086 | No text annotation | ||
| IL_1I97_004 | Isolated non-canonical cWW pair | ||
| IL_1I97_087 | No text annotation | ||
| IL_1I97_006 | Isolated cWH basepair | ||
| IL_1I97_007 | No text annotation | ||
| IL_1I97_008 | Isolated non-canonical cWW pair | ||
| IL_1I97_011 | Tandem non-canonical cWW pairs | ||
| IL_1I97_012 | Isolated non-canonical cWW pair | ||
| IL_1I97_089 | No text annotation | ||
| IL_1I97_013 | tWH-tWH-tHW-tHW | ||
| IL_1I97_090 | Tandem non-canonical cWW pairs | ||
| IL_1I97_015 | Isolated non-canonical cWW pair | ||
| IL_1I97_091 | No text annotation | ||
| IL_1I97_017 | No text annotation | ||
| IL_1I97_092 | No text annotation | ||
| IL_1I97_018 | Isolated non-canonical cWW pair | ||
| IL_1I97_019 | No text annotation | ||
| IL_1I97_093 | No text annotation | ||
| IL_1I97_023 | Isolated non-canonical cWW pair | ||
| IL_1I97_094 | No text annotation | ||
| IL_1I97_024 | No text annotation | ||
| IL_1I97_096 | No text annotation | ||
| IL_1I97_097 | No text annotation | ||
| IL_1I97_029 | No text annotation | ||
| IL_1I97_030 | Isolated non-canonical cWW pair | ||
| IL_1I97_031 | Self complementary | ||
| IL_1I97_032 | Isolated cWH basepair | ||
| IL_1I97_099 | No text annotation | ||
| IL_1I97_035 | No text annotation | ||
| IL_1I97_100 | Major groove platform with extra cWW | ||
| IL_1I97_038 | Isolated non-canonical cWW pair | ||
| IL_1I97_039 | No text annotation | ||
| IL_1I97_101 | No text annotation | ||
| IL_1I97_040 | Isolated cWH basepair | ||
| IL_1I97_044 | Isolated non-canonical cWW pair | ||
| IL_1I97_046 | Isolated cWH basepair | ||
| IL_1I97_047 | Isolated non-canonical cWW pair | ||
| IL_1I97_048 | No text annotation | ||
| IL_1I97_102 | Partly complementary | ||
| IL_1I97_050 | Isolated non-canonical cWW pair | ||
| IL_1I97_052 | Isolated cWS basepair | ||
| IL_1I97_053 | Isolated non-canonical cWW pair | ||
| IL_1I97_055 | Isolated non-canonical cWW contact | ||
| IL_1I97_056 | Tandem non-canonical cWW pairs | ||
| IL_1I97_058 | Tandem non-canonical cWW pairs | ||
| IL_1I97_104 | No text annotation | ||
| IL_1I97_105 | Minor groove platform with extra cWW | ||
| IL_1I97_106 | Partly complementary | ||
| IL_1I97_107 | No text annotation | ||
| IL_1I97_108 | No text annotation | ||
| IL_1I97_063 | Isolated non-canonical cWW pair | ||
| IL_1I97_109 | No text annotation | ||
| IL_1I97_069 | Isolated non-canonical cWW pair | ||
| IL_1I97_070 | Isolated cWH basepair | ||
| IL_1I97_074 | Isolated cWH basepair | ||
| IL_1I97_075 | Tandem non-canonical cWW pairs | ||
| IL_1I97_111 | No text annotation | ||
| IL_1I97_077 | Isolated non-canonical cWW contact | ||
| IL_1I97_078 | Isolated non-canonical cWW pair | ||
| IL_1I97_079 | Isolated non-canonical cWW pair | ||
| IL_1I97_081 | Tandem non-canonical cWW pairs | ||
| IL_1I97_112 | No text annotation | ||
| IL_1I97_083 | Isolated non-canonical cWW pair | ||
| IL_1I97_084 | Isolated non-canonical cWW pair | ||
| IL_1I97_085 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_1I97_001 | 1/A/46:52, 1/A/354:362, 1/A/388:390 | No text annotation | homologous J3_4LFB_014 J3_46317.4 | |
| J3_1I97_008 | 1/A/567:573, 1/A/632:638, 1/A/734:740 | No text annotation | ||
| J3_1I97_009 | 1/A/654:662, 1/A/694:708, 1/A/715:718 | No text annotation | ||
| J3_1I97_010 | 1/A/910:917, 1/A/1324:1332, 1/A/1353:1366 | No text annotation | ||
| J3_1I97_014 | 1/A/930:939, 1/A/950:963, 1/A/1200:1209 | No text annotation | ||
| J3_1I97_002 | 1/A/931:939, 1/A/950:961, 1/A/1202:1207 | No text annotation | ||
| J3_1I97_003 | 1/A/967:977, 1/A/1023:1029, 1/A/1191:1196 | No text annotation | ||
| J3_1I97_012 | 1/A/967:978, 1/A/1022:1029, 1/A/1191:1196 | No text annotation | ||
| J3_1I97_004 | 1/A/980:984, 1/A/1001:1006, 1/A/1015:1020 | No text annotation | homologous J3_6CZR_022 NA | |
| J3_1I97_015 | 1/A/1045:1050, 1/A/1089:1095, 1/A/1168:1174 | No text annotation | homologous J3_4LFB_007 J3_08394.3 | |
| J3_1I97_006 | 1/A/1055:1058, 1/A/1063:1069, 1/A/1080:1084 | No text annotation | ||
| J3_1I97_007 | 1/A/1098:1100, 1/A/1137:1143, 1/A/1156:1165 | No text annotation | homologous J3_5J7L_054 J3_17791.2 | |
| J4_1I97_001 | 1/A/108:115, 1/A/234:235, 1/A/281:284, 1/A/306:307 | No text annotation | homologous J4_6CZR_027 NA | |
| J4_1I97_005 | 1/A/136:138, 1/A/172:177, 1/A/200:204, 1/A/214:216 | No text annotation | homologous J4_4LFB_002 J4_88771.1 | |
| J4_1I97_003 | 1/A/552:560, 1/A/747:752, 1/A/793:804, 1/A/856:858 | No text annotation | ||
| J4_1I97_006 | 1/A/918:923, 1/A/1216:1222, 1/A/1277:1289, 1/A/1310:1323 | No text annotation | ||
| J5_1I97_003 | 1/A/36:39, 1/A/398:401, 1/A/431:436, 1/A/476:488, 1/A/509:531 | No text annotation | ||
| J5_1I97_004 | 1/A/54:61, 1/A/99:107, 1/A/308:311, 1/A/332:335, 1/A/344:352 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_1I97_011 | No text annotation | ||
| J3_1I97_005 | No text annotation | ||
| J3_1I97_013 | No text annotation | ||
| J4_1I97_002 | No text annotation | ||
| J4_1I97_004 | No text annotation | ||
| J5_1I97_001 | No text annotation | ||
| J5_1I97_002 | No text annotation |
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