1I97 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
# | loop id | location | annotation | motif |
---|---|---|---|---|
1 | ➜ | 1/A/12:22 | NA | NA |
2 | ➜ | 1/A/78:84 | NA | NA |
3 | ➜ | 1/A/152:157 | NA | NA |
4 | ➜ | 1/A/186:191 | NA | NA |
5 | ➜ | 1/A/206:212 | NA | NA |
6 | ➜ | 1/A/252:264 | NA | NA |
7 | ➜ | 1/A/291:296 | NA | NA |
8 | ➜ | 1/A/315:328 | NA | NA |
9 | ➜ | 1/A/336:343 | NA | NA |
10 | ➜ | 1/A/374:379 | NA | NA |
11 | ➜ | 1/A/414:419 | NA | NA |
12 | ➜ | 1/A/452:458 | NA | NA |
13 | ➜ | 1/A/505:510 | NA | NA |
14 | ➜ | 1/A/600:606 | NA | NA |
15 | ➜ | 1/A/672:681 | NA | NA |
16 | ➜ | 1/A/708:715 | NA | NA |
17 | ➜ | 1/A/769:779 | NA | NA |
18 | ➜ | 1/A/820:826 | NA | NA |
19 | ➜ | 1/A/874:879 | NA | NA |
20 | ➜ | 1/A/940:949 | NA | NA |
21 | ➜ | 1/A/990:995 | NA | NA |
22 | ➜ | 1/A/1008:1013 | NA | NA |
23 | ➜ | 1/A/1058:1063 | NA | NA |
24 | ➜ | 1/A/1071:1078 | NA | NA |
25 | ➜ | 1/A/1114:1124 | NA | NA |
26 | ➜ | 1/A/1144:1155 | NA | NA |
27 | ➜ | 1/A/1246:1251 | NA | NA |
28 | ➜ | 1/A/1295:1304 | NA | NA |
29 | ➜ | 1/A/1336:1349 | NA | NA |
30 | ➜ | 1/A/1429:1434 | NA | NA |
31 | ➜ | 1/A/1492:1497 | NA | NA |
Problematic loops
No problematic loops
Valid loops
# | loop id | location | annotation | motif |
---|---|---|---|---|
1 | ➜ | 1/A/30:32,1/A/535:536 | NA | NA |
2 | ➜ | 1/A/44:45,1/A/391:393 | NA | NA |
3 | ➜ | 1/A/63:67,1/A/95:97 | NA | NA |
4 | ➜ | 1/A/67:69,1/A/93:95 | NA | NA |
5 | ➜ | 1/A/76:78,1/A/84:86 | NA | NA |
6 | ➜ | 1/A/115:117,1/A/232:234 | NA | NA |
7 | ➜ | 1/A/122:125,1/A/226:227 | NA | NA |
8 | ➜ | 1/A/126:131,1/A/221:225 | NA | NA |
9 | ➜ | 1/A/142:148,1/A/161:168 | NA | NA |
10 | ➜ | 1/A/180:182,1/A/195:197 | NA | NA |
11 | ➜ | 1/A/182:184,1/A/193:195 | NA | NA |
12 | ➜ | 1/A/237:244,1/A/270:279 | NA | NA |
13 | ➜ | 1/A/244:248,1/A/268:270 | NA | NA |
14 | ➜ | 1/A/286:289,1/A/298:304 | NA | NA |
15 | ➜ | 1/A/362:364,1/A/387:388 | NA | NA |
16 | ➜ | 1/A/366:370,1/A/384:385 | NA | NA |
17 | ➜ | 1/A/370:371,1/A/382:384 | NA | NA |
18 | ➜ | 1/A/404:412,1/A/421:428 | NA | NA |
19 | ➜ | 1/A/440:444,1/A/467:472 | NA | NA |
20 | ➜ | 1/A/444:449,1/A/461:467 | NA | NA |
21 | ➜ | 1/A/487:494,1/A/523:524 | NA | NA |
22 | ➜ | 1/A/497:505,1/A/510:520 | NA | NA |
23 | ➜ | 1/A/561:567,1/A/740:746 | NA | NA |
24 | ➜ | 1/A/567:569,1/A/738:740 | NA | NA |
25 | ➜ | 1/A/575:577,1/A/628:630 | NA | NA |
26 | ➜ | 1/A/577:579,1/A/627:628 | NA | NA |
27 | ➜ | 1/A/580:581,1/A/623:626 | NA | NA |
28 | ➜ | 1/A/587:595,1/A/611:617 | NA | NA |
29 | ➜ | 1/A/637:638,1/A/734:737 | NA | NA |
30 | ➜ | 1/A/640:641,1/A/730:732 | NA | NA |
31 | ➜ | 1/A/645:650,1/A/722:726 | NA | NA |
32 | ➜ | 1/A/666:672,1/A/681:690 | NA | NA |
33 | ➜ | 1/A/757:761,1/A/787:788 | NA | NA |
34 | ➜ | 1/A/762:766,1/A/782:786 | NA | NA |
35 | ➜ | 1/A/809:812,1/A/834:851 | NA | NA |
36 | ➜ | 1/A/815:817,1/A/829:831 | NA | NA |
37 | ➜ | 1/A/818:820,1/A/826:828 | NA | NA |
38 | ➜ | 1/A/899:902,1/A/1373:1377 | NA | NA |
39 | ➜ | 1/A/902:904,1/A/1372:1373 | NA | NA |
40 | ➜ | 1/A/904:906,1/A/1370:1372 | NA | NA |
41 | ➜ | 1/A/910:913,1/A/1361:1366 | NA | NA |
42 | ➜ | 1/A/918:920,1/A/1321:1323 | NA | NA |
43 | ➜ | 1/A/925:927,1/A/1212:1214 | NA | NA |
44 | ➜ | 1/A/930:931,1/A/1207:1209 | NA | NA |
45 | ➜ | 1/A/986:989,1/A/996:999 | NA | NA |
46 | ➜ | 1/A/1030:1032,1/A/1189:1190 | NA | NA |
47 | ➜ | 1/A/1033:1038,1/A/1185:1188 | NA | NA |
48 | ➜ | 1/A/1039:1040,1/A/1180:1184 | NA | NA |
49 | ➜ | 1/A/1042:1045,1/A/1174:1178 | NA | NA |
50 | ➜ | 1/A/1103:1110,1/A/1125:1134 | NA | NA |
51 | ➜ | 1/A/1110:1114,1/A/1124:1125 | NA | NA |
52 | ➜ | 1/A/1227:1234,1/A/1265:1272 | NA | NA |
53 | ➜ | 1/A/1235:1240,1/A/1257:1264 | NA | NA |
54 | ➜ | 1/A/1240:1241,1/A/1255:1257 | NA | NA |
55 | ➜ | 1/A/1241:1243,1/A/1254:1255 | NA | NA |
56 | ➜ | 1/A/1284:1289,1/A/1310:1315 | NA | NA |
57 | ➜ | 1/A/1383:1386,1/A/1474:1478 | NA | NA |
58 | ➜ | 1/A/1387:1389,1/A/1471:1473 | NA | NA |
59 | ➜ | 1/A/1389:1391,1/A/1468:1471 | NA | NA |
60 | ➜ | 1/A/1393:1396,1/A/1463:1466 | NA | NA |
61 | ➜ | 1/A/1397:1403,1/A/1456:1462 | NA | NA |
62 | ➜ | 1/A/1405:1407,1/A/1452:1454 | NA | NA |
63 | ➜ | 1/A/1407:1409,1/A/1450:1452 | NA | NA |
64 | ➜ | 1/A/1413:1417,1/A/1443:1446 | NA | NA |
65 | ➜ | 1/A/1417:1420,1/A/1440:1443 | NA | NA |
66 | ➜ | 1/A/1422:1427,1/A/1436:1438 | NA | NA |
67 | ➜ | 1/A/1487:1489,1/A/1500:1502 | NA | NA |
68 | ➜ | 1/A/1489:1491,1/A/1498:1500 | NA | NA |
Problematic loops
Valid loops
# | loop id | location | annotation | motif |
---|---|---|---|---|
1 | ➜ | 1/A/46:52,1/A/354:362,1/A/388:390 | NA | NA |
2 | ➜ | 1/A/931:939,1/A/950:961,1/A/1202:1207 | NA | NA |
3 | ➜ | 1/A/967:977,1/A/1023:1029,1/A/1191:1196 | NA | NA |
4 | ➜ | 1/A/980:984,1/A/1001:1006,1/A/1015:1020 | NA | NA |
5 | ➜ | 1/A/1045:1050,1/A/1089:1096,1/A/1167:1174 | NA | NA |
6 | ➜ | 1/A/1055:1058,1/A/1063:1069,1/A/1080:1084 | NA | NA |
7 | ➜ | 1/A/1098:1100,1/A/1137:1143,1/A/1156:1165 | NA | NA |
Problematic loops
No problematic loops
Coloring options: