2JL7 Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_2JL7_001 | 1/A/12:22 | No text annotation Not in a motif group | geometric HL_4LFB_001 HL_89881.2 | |
| HL_2JL7_003 | 1/A/158:163 | GNRA Not in a motif group | geometric HL_4LFB_003 HL_42097.1 | |
| HL_2JL7_004 | 1/A/189C:189H | No text annotation Not in a motif group | geometric HL_6CZR_075 HL_10278.1 | |
| HL_2JL7_005 | 1/A/201:216 | No text annotation Not in a motif group | geometric HL_6CZR_089 HL_53837.1 | |
| HL_2JL7_006 | 1/A/259:267 | No text annotation Not in a motif group | geometric HL_4LFB_006 HL_69023.2 | |
| HL_2JL7_007 | 1/A/296:301 | GNRA Not in a motif group | geometric HL_4LFB_007 HL_42097.1 | |
| HL_2JL7_008 | 1/A/320:333 | No text annotation Not in a motif group | geometric HL_4LFB_008 HL_81205.2 | |
| HL_2JL7_010 | 1/A/379:384 | GNRA Not in a motif group | geometric HL_5F9F_003 HL_42097.1 | |
| HL_2JL7_011 | 1/A/419:424 | No text annotation Not in a motif group | geometric HL_7A0S_042 HL_03562.2 | |
| HL_2JL7_012 | 1/A/458:473 | No text annotation Not in a motif group | geometric HL_4LFB_012 HL_43656.2 | |
| HL_2JL7_013 | 1/A/522:527 | No text annotation Not in a motif group | geometric HL_2ZNI_001 HL_75407.1 | |
| HL_2JL7_014 | 1/A/617:623 | No text annotation Not in a motif group | geometric HL_4LFB_014 HL_26881.1 | |
| HL_2JL7_015 | 1/A/689:698 | No text annotation Not in a motif group | geometric HL_4LFB_015 HL_12326.1 | |
| HL_2JL7_016 | 1/A/726:731 | Other HL Not in a motif group | geometric HL_4LFB_016 HL_87030.2 | |
| HL_2JL7_017 | 1/A/786:796 | No text annotation Not in a motif group | geometric HL_4LFB_017 HL_12326.1 | |
| HL_2JL7_018 | 1/A/838:848 | No text annotation Not in a motif group | ||
| HL_2JL7_019 | 1/A/862:867 | GNRA Not in a motif group | geometric HL_4LFB_019 HL_42097.1 | |
| HL_2JL7_020 | 1/A/897:902 | GNRA Not in a motif group | geometric HL_4V9F_048 HL_42097.1 | |
| HL_2JL7_021 | 1/A/963:972 | No text annotation Not in a motif group | geometric HL_4V88_212 HL_73530.2 | |
| HL_2JL7_022 | 1/A/1012:1017 | GNRA Not in a motif group | geometric HL_4LFB_022 HL_42097.1 | |
| HL_2JL7_023 | 1/A/1076:1081 | GNRA Not in a motif group | geometric HL_2Z75_004 HL_42097.1 | |
| HL_2JL7_024 | 1/A/1089:1096 | No text annotation Not in a motif group | geometric HL_4LFB_025 HL_71554.2 | |
| HL_2JL7_025 | 1/A/1128:1143 | No text annotation Not in a motif group | ||
| HL_2JL7_026 | 1/A/1165:1171 | GNRA Not in a motif group | geometric HL_5XTM_002 HL_42097.1 | |
| HL_2JL7_027 | 1/A/1265:1270 | No text annotation Not in a motif group | geometric HL_7A0S_068 HL_42097.1 | |
| HL_2JL7_028 | 1/A/1314:1323 | No text annotation Not in a motif group | geometric HL_4LFB_029 HL_89380.2 | |
| HL_2JL7_030 | 1/A/1444:1458 | No text annotation Not in a motif group | geometric HL_6CF2_001 HL_24068.2 | |
| HL_2JL7_031 | 1/A/1515:1520 | Other HL Not in a motif group | geometric HL_4V88_222 HL_16173.1 | |
| HL_2JL7_033 | 1/V/31:39 | tRNA anticodon loop Not in a motif group | geometric HL_4V90_033 HL_53597.2 | |
| HL_2JL7_036 | 1/W/30:40 | No text annotation Not in a motif group | geometric HL_4V7M_039 HL_36684.1 | |
| HL_2JL7_037 | 1/W/51:63 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_2JL7_002 | No text annotation | ||
| HL_2JL7_009 | UNCG | ||
| HL_2JL7_029 | No text annotation | ||
| HL_2JL7_032 | No text annotation | ||
| HL_2JL7_034 | T-loop with 2 stacked bulged bases | ||
| HL_2JL7_035 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_2JL7_001 | 1/A/30:32, 1/A/552:553 | Single bulged G Not in a motif group | geometric IL_4LFB_001 IL_00225.2 | |
| IL_2JL7_002 | 1/A/44:45, 1/A/396:398 | Single bulged A Not in a motif group | geometric IL_4LFB_002 IL_37497.2 | |
| IL_2JL7_003 | 1/A/47:52, 1/A/359:361 | No text annotation Not in a motif group | geometric IL_4LFB_003 IL_11178.1 | |
| IL_2JL7_004 | 1/A/63:66, 1/A/103:104 | Multiple bulged bases Not in a motif group | geometric IL_5WTK_001 IL_16396.2 | |
| IL_2JL7_005 | 1/A/67:69, 1/A/100:102 | No text annotation Not in a motif group | geometric IL_2R8S_001 IL_95997.1 | |
| IL_2JL7_006 | 1/A/129:131, 1/A/231:232 | Multiple bulged bases Not in a motif group | geometric IL_4LFB_007 IL_16396.2 | |
| IL_2JL7_007 | 1/A/132:136, 1/A/227:230 | No text annotation Not in a motif group | geometric IL_4LFB_008 IL_58764.3 | |
| IL_2JL7_008 | 1/A/148:153, 1/A/168:174 | tWH-tWH-tHW-tHW Not in a motif group | geometric IL_4LFB_009 IL_39753.1 | |
| IL_2JL7_009 | 1/A/186:189, 1/A/189K:191 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4K27_001 IL_30621.2 | |
| IL_2JL7_010 | 1/A/242:247, 1/A/277:284 | Kink-turn with non-sequential stacking Not in a motif group | geometric IL_4LFB_011 IL_45067.2 | |
| IL_2JL7_011 | 1/A/249:253, 1/A/273:275 | No text annotation Not in a motif group | geometric IL_6CZR_124 IL_38684.1 | |
| IL_2JL7_012 | 1/A/292:293, 1/A/304:308 | C-loop Not in a motif group | geometric IL_4LFB_013 IL_37712.2 | |
| IL_2JL7_013 | 1/A/371:375, 1/A/389:390 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_2JL7_014 | 1/A/375:376, 1/A/387:389 | Single bulged G Not in a motif group | geometric IL_4LFB_016 IL_00225.2 | |
| IL_2JL7_015 | 1/A/409:416, 1/A/427:433 | No text annotation Not in a motif group | ||
| IL_2JL7_016 | 1/A/446:450, 1/A/483:488 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_4LFB_018 IL_88269.3 | |
| IL_2JL7_017 | 1/A/450:455, 1/A/476:483 | No text annotation Not in a motif group | geometric IL_4LFB_019 IL_11882.1 | |
| IL_2JL7_018 | 1/A/504:511, 1/A/540:541 | SSU/LSU pseudoknot Not in a motif group | geometric IL_4LFB_020 IL_15861.7 | |
| IL_2JL7_019 | 1/A/515:521, 1/A/528:536 | No text annotation Not in a motif group | geometric IL_4V88_415 IL_55871.1 | |
| IL_2JL7_020 | 1/A/569:575, 1/A/880:881 | No text annotation Not in a motif group | geometric IL_4LFB_022 IL_69996.1 | |
| IL_2JL7_021 | 1/A/580:584, 1/A/757:761 | tSH-tHW-tHS Not in a motif group | geometric IL_4LFB_023 IL_17136.1 | |
| IL_2JL7_022 | 1/A/594:596, 1/A/644:645 | Major groove platform Not in a motif group | geometric IL_4LFB_024 IL_27635.1 | |
| IL_2JL7_023 | 1/A/597:598, 1/A/640:643 | Major groove minor groove platform; mini C-loop Not in a motif group | geometric IL_5J7L_029 IL_09061.6 | |
| IL_2JL7_024 | 1/A/605:612, 1/A/628:633 | No text annotation Not in a motif group | geometric IL_4LFB_026 IL_78349.1 | |
| IL_2JL7_025 | 1/A/654:655, 1/A/751:754 | Major groove platform; stack outside cWW Not in a motif group | geometric IL_4LFB_027 IL_50694.2 | |
| IL_2JL7_026 | 1/A/657:658, 1/A/747:749 | Major groove platform Not in a motif group | geometric IL_4LFB_028 IL_27635.1 | |
| IL_2JL7_027 | 1/A/662:666, 1/A/740:743 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4LFB_029 IL_71110.1 | |
| IL_2JL7_028 | 1/A/673:678, 1/A/712:717 | No text annotation Not in a motif group | geometric IL_5J7L_034 IL_04668.1 | |
| IL_2JL7_029 | 1/A/683:688, 1/A/699:707 | Kink-turn Not in a motif group | geometric IL_4LFB_031 IL_37722.1 | |
| IL_2JL7_030 | 1/A/774:778, 1/A/804:805 | Left turn Not in a motif group | geometric IL_5J7L_036 IL_29346.1 | |
| IL_2JL7_031 | 1/A/779:783, 1/A/799:803 | tSH-tHW-tHS Not in a motif group | geometric IL_5J7L_037 IL_17136.1 | |
| IL_2JL7_032 | 1/A/887:894, 1/A/905:910 | 8x6 Sarcin-Ricin with inserted Y; G-bulge Not in a motif group | geometric IL_4LFB_034 IL_24606.2 | |
| IL_2JL7_033 | 1/A/922:923, 1/A/1393:1395 | Single bulged A Not in a motif group | geometric IL_5J7L_039 IL_37497.2 | |
| IL_2JL7_034 | 1/A/925:927, 1/A/1390:1391 | Single bulged G Not in a motif group | geometric IL_4LFB_036 IL_00225.2 | |
| IL_2JL7_035 | 1/A/933:935, 1/A/1380:1384 | Minor groove platform Not in a motif group | geometric IL_5J7L_041 IL_47078.1 | |
| IL_2JL7_036 | 1/A/953:954, 1/A/1226:1228 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | geometric IL_1U9S_003 IL_69996.1 | |
| IL_2JL7_037 | 1/A/993:997, 1/A/1044:1045 | Minor groove platform Not in a motif group | geometric IL_4LFB_039 IL_47078.1 | |
| IL_2JL7_039 | 1/A/1048:1050, 1/A/1208:1209 | Single bulged U Not in a motif group | geometric IL_4LFB_042 IL_83039.13 | |
| IL_2JL7_040 | 1/A/1052:1056, 1/A/1204:1206 | Isolated cWS basepair Not in a motif group | geometric IL_4LFB_044 IL_76319.2 | |
| IL_2JL7_041 | 1/A/1057:1058, 1/A/1199:1203 | Minor groove platform Not in a motif group | geometric IL_4LFB_045 IL_93353.1 | |
| IL_2JL7_042 | 1/A/1060:1061, 1/A/1195:1197 | Single bulged U Not in a motif group | geometric IL_6CZR_156 IL_83039.13 | |
| IL_2JL7_043 | 1/A/1061:1063, 1/A/1193:1195 | No text annotation Not in a motif group | geometric IL_4LFB_047 IL_95997.1 | |
| IL_2JL7_044 | 1/A/1124:1128, 1/A/1143:1149 | No text annotation Not in a motif group | geometric IL_4LFB_048 IL_85222.1 | |
| IL_2JL7_045 | 1/A/1247:1253, 1/A/1284:1290 | No text annotation Not in a motif group | geometric IL_4LFB_051 IL_09129.1 | |
| IL_2JL7_046 | 1/A/1255:1258, 1/A/1277:1282 | No text annotation Not in a motif group | geometric IL_4LFB_052 IL_84205.1 | |
| IL_2JL7_047 | 1/A/1259:1262, 1/A/1273:1276 | Double sheared Not in a motif group | geometric IL_5J7L_256 IL_09705.9 | |
| IL_2JL7_048 | 1/A/1303:1308, 1/A/1329:1334 | No text annotation Not in a motif group | geometric IL_4LFB_055 IL_19954.2 | |
| IL_2JL7_049 | 1/A/1399:1401, 1/A/1501:1504 | No text annotation Not in a motif group | geometric IL_4V88_463 IL_36143.3 | |
| IL_2JL7_050 | 1/A/1401:1404, 1/A/1497:1501 | No text annotation Not in a motif group | geometric IL_4V88_464 IL_99670.1 | |
| IL_2JL7_051 | 1/A/1405:1407, 1/A/1494:1496 | No text annotation Not in a motif group | geometric IL_3GM7_005 IL_95997.1 | |
| IL_2JL7_052 | 1/A/1407:1409, 1/A/1491:1494 | Decoding loop related Not in a motif group | geometric IL_3C3Z_002 IL_64417.1 | |
| IL_2JL7_053 | 1/A/1412:1414, 1/A/1486:1488 | No text annotation Not in a motif group | geometric IL_4LFB_059 IL_95997.1 | |
| IL_2JL7_054 | 1/A/1416:1419, 1/A/1481:1484 | Double sheared Not in a motif group | geometric IL_5J7L_062 IL_09705.9 | |
| IL_2JL7_055 | 1/A/1431:1435, 1/A/1466:1469 | UAA/GAN variation Not in a motif group | geometric IL_4LFB_062 IL_07235.1 | |
| IL_2JL7_056 | 1/A/1435:1437, 1/A/1464:1466 | No text annotation Not in a motif group | geometric IL_4LFB_063 IL_95997.1 | |
| IL_2JL7_057 | 1/A/1440:1443, 1/A/1459:1461 | Isolated tHS basepair with bulges Not in a motif group | geometric IL_7RQB_082 IL_38958.7 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_2JL7_038 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_2JL7_001 | 1/A/586:588, 1/A/651:654, 1/A/754:755 | No text annotation Not in a motif group | ||
| J3_2JL7_002 | 1/A/672:673, 1/A/717:725, 1/A/732:734 | No text annotation Not in a motif group | ||
| J3_2JL7_003 | 1/A/826:829, 1/A/857:861, 1/A/868:874 | No text annotation Not in a motif group | ||
| J3_2JL7_004 | 1/A/936:939, 1/A/1344:1350, 1/A/1372:1379 | No text annotation Not in a motif group | ||
| J3_2JL7_005 | 1/A/943:946, 1/A/1235:1237, 1/A/1337:1340 | No text annotation Not in a motif group | ||
| J3_2JL7_006 | 1/A/955:962, 1/A/973:984, 1/A/1221:1225 | No text annotation Not in a motif group | ||
| J3_2JL7_007 | 1/A/990:993, 1/A/1045:1047, 1/A/1210:1215 | No text annotation Not in a motif group | ||
| J3_2JL7_008 | 1/A/1063:1068, 1/A/1107:1113, 1/A/1187:1193 | No text annotation Not in a motif group | ||
| J3_2JL7_009 | 1/A/1073:1074, 1/A/1083:1087, 1/A/1098:1102 | No text annotation Not in a motif group | ||
| J3_2JL7_010 | 1/A/1116:1118, 1/A/1155:1161, 1/A/1175:1184 | No text annotation Not in a motif group | ||
| J3_2JL7_011 | 1/A/1237:1241, 1/A/1296:1303, 1/A/1334:1337 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
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