6ZQD Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_6ZQD_001 | 1/D2/4:9 | No text annotation Not in a motif group | geometric HL_5U3G_001 HL_87030.2 | |
| HL_6ZQD_002 | 1/D2/23:57 | No text annotation Not in a motif group | ||
| HL_6ZQD_003 | 1/D3/7:17 | No text annotation Not in a motif group | homologous HL_4V88_186 HL_89881.2 | |
| HL_6ZQD_004 | 1/D3/70:81 | No text annotation Not in a motif group | homologous HL_4V88_187 HL_40069.1 | |
| HL_6ZQD_005 | 1/D3/154:160 | Other HL Not in a motif group | homologous HL_4V88_188 HL_76539.2 | |
| HL_6ZQD_006 | 1/D3/190:195 | No text annotation Not in a motif group | homologous HL_4V88_189 HL_77805.2 | |
| HL_6ZQD_007 | 1/D3/230:235 | No text annotation Not in a motif group | geometric HL_6JQ6_004 HL_03562.2 | |
| HL_6ZQD_008 | 1/D3/243:250 | T-loop with 1 bulged base Not in a motif group | homologous HL_4V88_191 HL_27930.1 | |
| HL_6ZQD_009 | 1/D3/276:279 | No text annotation Not in a motif group | ||
| HL_6ZQD_010 | 1/D3/330:338 | No text annotation Not in a motif group | homologous HL_4V88_193 HL_69023.2 | |
| HL_6ZQD_011 | 1/D3/368:373 | No text annotation Not in a motif group | geometric HL_6WPI_001 HL_42097.1 | |
| HL_6ZQD_012 | 1/D3/393:404 | No text annotation Not in a motif group | homologous HL_4V88_195 HL_84288.1 | |
| HL_6ZQD_013 | 1/D3/414:419 | UNCG Not in a motif group | homologous HL_4V88_196 HL_03562.2 | |
| HL_6ZQD_014 | 1/D3/450:456 | No text annotation Not in a motif group | homologous HL_4V88_197 HL_09136.1 | |
| HL_6ZQD_015 | 1/D3/491:496 | No text annotation Not in a motif group | geometric HL_2Y9H_003 HL_16173.1 | |
| HL_6ZQD_016 | 1/D3/520:532 | No text annotation Not in a motif group | geometric HL_4V88_199 HL_06285.2 | |
| HL_6ZQD_017 | 1/D3/561:566 | No text annotation Not in a motif group | geometric HL_5TBW_006 HL_98984.2 | |
| HL_6ZQD_018 | 1/D3/716:722 | No text annotation Not in a motif group | ||
| HL_6ZQD_019 | 1/D3/764:772 | No text annotation Not in a motif group | homologous HL_4V88_203 HL_46766.2 | |
| HL_6ZQD_020 | 1/D3/777:783 | No text annotation Not in a motif group | homologous HL_4V88_204 HL_97896.2 | |
| HL_6ZQD_022 | 1/D3/900:909 | No text annotation Not in a motif group | homologous HL_4V88_206 HL_12326.1 | |
| HL_6ZQD_023 | 1/D3/937:942 | Other HL Not in a motif group | homologous HL_4V88_207 HL_87030.2 | |
| HL_6ZQD_024 | 1/D3/997:1007 | No text annotation Not in a motif group | geometric HL_4WF9_011 HL_75407.1 | |
| HL_6ZQD_025 | 1/D3/1055:1064 | No text annotation Not in a motif group | geometric HL_4V88_198 HL_56691.2 | |
| HL_6ZQD_026 | 1/D3/1084:1089 | Other HL Not in a motif group | homologous HL_4V88_210 HL_42097.1 | |
| HL_6ZQD_028 | 1/D3/1501:1506 | GNRA Not in a motif group | homologous HL_4V88_218 HL_42097.1 | |
| HL_6ZQD_029 | 1/D3/1553:1558 | No text annotation Not in a motif group | geometric HL_7A0S_007 HL_02862.2 | |
| HL_6ZQD_030 | 1/D3/1594:1602 | No text annotation Not in a motif group | ||
| HL_6ZQD_031 | 1/D3/1629:1636 | No text annotation Not in a motif group | ||
| HL_6ZQD_032 | 1/D3/1698:1703 | No text annotation Not in a motif group | geometric HL_7RQB_063 HL_42097.1 | |
| HL_6ZQD_033 | 1/D3/1778:1783 | No text annotation Not in a motif group | geometric HL_6AAX_001 HL_94803.1 | |
| HL_6ZQD_034 | 1/D4/153:160 | No text annotation Not in a motif group | ||
| HL_6ZQD_035 | 1/D4/180:185 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_6ZQD_021 | No text annotation | ||
| HL_6ZQD_027 | No text annotation | ||
| HL_6ZQD_036 | No text annotation | ||
| HL_6ZQD_037 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_6ZQD_001 | 1/D2/17:18, 1/D2/62:64 | Single bulged G Not in a motif group | geometric IL_5TBW_037 IL_00225.2 | |
| IL_6ZQD_002 | 1/D2/465:468, 1/D4/50:51 | No text annotation Not in a motif group | geometric IL_5TBW_080 IL_74125.1 | |
| IL_6ZQD_003 | 1/D2/468:470, 1/D4/48:50 | Single stack bend Not in a motif group | geometric IL_4V9F_005 IL_76488.2 | |
| IL_6ZQD_004 | 1/D3/24:26, 1/D3/600:601 | Single bulged C Not in a motif group | homologous IL_4V88_384 IL_61258.12 | |
| IL_6ZQD_005 | 1/D3/35:37, 1/D3/471:473 | UC cWW Not in a motif group | homologous IL_4V88_385 IL_51629.2 | |
| IL_6ZQD_006 | 1/D3/37:41, 1/D3/466:471 | No text annotation Not in a motif group | ||
| IL_6ZQD_007 | 1/D3/50:52, 1/D3/428:429 | Minor groove platform Not in a motif group | homologous IL_4V88_388 IL_93353.1 | |
| IL_6ZQD_008 | 1/D3/58:63, 1/D3/87:89 | No text annotation Not in a motif group | homologous IL_4V88_389 IL_95004.1 | |
| IL_6ZQD_009 | 1/D3/64:69, 1/D3/82:86 | No text annotation Not in a motif group | homologous IL_4V88_390 IL_77691.1 | |
| IL_6ZQD_010 | 1/D3/109:112, 1/D3/302:305 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_391 IL_30621.2 | |
| IL_6ZQD_011 | 1/D3/113:116, 1/D3/300:301 | Multiple bulged bases Not in a motif group | homologous IL_4V88_392 IL_44546.1 | |
| IL_6ZQD_012 | 1/D3/117:122, 1/D3/295:299 | No text annotation Not in a motif group | homologous IL_4V88_393 IL_64181.2 | |
| IL_6ZQD_013 | 1/D3/143:149, 1/D3/165:172 | tWH-tWH-tHW-tHW Not in a motif group | homologous IL_4V88_394 IL_80604.2 | |
| IL_6ZQD_014 | 1/D3/150:152, 1/D3/162:164 | Isolated cWH basepair Not in a motif group | geometric IL_6RA4_002 IL_51629.2 | |
| IL_6ZQD_015 | 1/D3/186:189, 1/D3/196:199 | Double sheared Not in a motif group | homologous IL_4V88_396 IL_09705.9 | |
| IL_6ZQD_016 | 1/D3/204:206, 1/D3/259:263 | No text annotation Not in a motif group | ||
| IL_6ZQD_017 | 1/D3/206:209, 1/D3/256:259 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_1D4R_001 IL_30621.2 | |
| IL_6ZQD_018 | 1/D3/265:267, 1/D3/288:289 | Single bulged A Not in a motif group | homologous IL_4V88_399 IL_37497.2 | |
| IL_6ZQD_019 | 1/D3/270:273, 1/D3/283:285 | No text annotation Not in a motif group | homologous IL_4V88_400 IL_47298.1 | |
| IL_6ZQD_020 | 1/D3/275:276, 1/D3/279:281 | Single bulged U Not in a motif group | homologous IL_4V88_401 IL_83039.13 | |
| IL_6ZQD_021 | 1/D3/311:316, 1/D3/348:355 | Kink-turn with non-sequential stacking Not in a motif group | homologous IL_4V88_402 IL_45067.2 | |
| IL_6ZQD_022 | 1/D3/318:323, 1/D3/345:346 | No text annotation Not in a motif group | geometric IL_5Y58_001 IL_48100.2 | |
| IL_6ZQD_023 | 1/D3/363:365, 1/D3/376:381 | No text annotation Not in a motif group | homologous IL_4V88_404 IL_11347.1 | |
| IL_6ZQD_024 | 1/D3/389:391, 1/D3/406:408 | Isolated cWH basepair Not in a motif group | homologous IL_4V88_405 IL_51629.2 | |
| IL_6ZQD_025 | 1/D3/411:413, 1/D3/420:422 | Isolated near basepair Not in a motif group | homologous IL_4V88_406 IL_52767.2 | |
| IL_6ZQD_026 | 1/D3/439:441, 1/D3/463:464 | Single bulged U Not in a motif group | homologous IL_4V88_407 IL_83039.13 | |
| IL_6ZQD_027 | 1/D3/443:447, 1/D3/460:461 | C-loop Not in a motif group | geometric IL_5J7L_018 IL_75255.1 | |
| IL_6ZQD_028 | 1/D3/447:448, 1/D3/458:460 | Single bulged G Not in a motif group | geometric IL_5J7L_019 IL_00225.2 | |
| IL_6ZQD_029 | 1/D3/482:483, 1/D3/504:506 | Single bulged A Not in a motif group | homologous IL_4V88_409 IL_37497.2 | |
| IL_6ZQD_030 | 1/D3/517:518, 1/D3/533:535 | Minor groove platform Not in a motif group | geometric IL_4UYK_001 IL_93353.1 | |
| IL_6ZQD_031 | 1/D3/518:520, 1/D3/532:533 | Minor groove platform Not in a motif group | homologous IL_4V88_412 IL_93353.1 | |
| IL_6ZQD_032 | 1/D3/551:552, 1/D3/584:587 | Multiple bulged bases Not in a motif group | geometric IL_3IGI_013 IL_71530.2 | |
| IL_6ZQD_033 | 1/D3/552:559, 1/D3/568:584 | No text annotation Not in a motif group | ||
| IL_6ZQD_034 | 1/D3/616:622, 1/D3/1104:1105 | No text annotation Not in a motif group | homologous IL_4V88_416 IL_69996.1 | |
| IL_6ZQD_035 | 1/D3/624:626, 1/D3/973:975 | No text annotation Not in a motif group | homologous IL_4V88_417 IL_95997.1 | |
| IL_6ZQD_036 | 1/D3/627:631, 1/D3/968:972 | No text annotation Not in a motif group | ||
| IL_6ZQD_037 | 1/D3/646:648, 1/D3/686:688 | No text annotation Not in a motif group | homologous IL_4V88_419 IL_95997.1 | |
| IL_6ZQD_038 | 1/D3/652:658, 1/D3/676:682 | No text annotation Not in a motif group | ||
| IL_6ZQD_039 | 1/D3/703:705, 1/D3/733:735 | Isolated cWH basepair Not in a motif group | geometric IL_3R1C_012 IL_51629.2 | |
| IL_6ZQD_040 | 1/D3/705:708, 1/D3/730:733 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_6CZR_168 IL_67743.1 | |
| IL_6ZQD_041 | 1/D3/709:712, 1/D3/726:729 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4K27_002 IL_30621.2 | |
| IL_6ZQD_042 | 1/D3/745:747, 1/D3/802:806 | Minor groove platform with extra cWW Not in a motif group | geometric IL_7RQB_031 IL_46796.1 | |
| IL_6ZQD_043 | 1/D3/748:750, 1/D3/799:801 | No text annotation Not in a motif group | homologous IL_4V88_424 IL_95997.1 | |
| IL_6ZQD_044 | 1/D3/751:759, 1/D3/791:798 | No text annotation Not in a motif group | ||
| IL_6ZQD_045 | 1/D3/865:866, 1/D3/962:965 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_4V88_428 IL_50694.2 | |
| IL_6ZQD_046 | 1/D3/868:869, 1/D3/958:960 | Single bulged U Not in a motif group | geometric IL_7KVT_002 IL_83039.13 | |
| IL_6ZQD_047 | 1/D3/871:874, 1/D3/953:956 | Tandem non-canonical cWW pairs Not in a motif group | geometric IL_4V88_430 IL_30621.2 | |
| IL_6ZQD_048 | 1/D3/874:878, 1/D3/950:953 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_431 IL_30621.2 | |
| IL_6ZQD_049 | 1/D3/885:888, 1/D3/924:927 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_432 IL_30621.2 | |
| IL_6ZQD_050 | 1/D3/893:895, 1/D3/917:919 | No text annotation Not in a motif group | geometric IL_2OE5_001 IL_95997.1 | |
| IL_6ZQD_051 | 1/D3/895:899, 1/D3/910:917 | Kink-turn Not in a motif group | homologous IL_4V88_434 IL_45067.2 | |
| IL_6ZQD_052 | 1/D3/985:990, 1/D3/1014:1016 | Other IL Not in a motif group | geometric IL_4V88_435 IL_22046.1 | |
| IL_6ZQD_053 | 1/D3/990:994, 1/D3/1010:1014 | tSH-tHW-tHS Not in a motif group | geometric IL_7A0S_049 IL_17136.1 | |
| IL_6ZQD_054 | 1/D3/1034:1036, 1/D3/1095:1101 | No text annotation Not in a motif group | homologous IL_4V88_437 IL_19557.3 | |
| IL_6ZQD_055 | 1/D3/1041:1044, 1/D3/1074:1077 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_438 IL_30621.2 | |
| IL_6ZQD_056 | 1/D3/1051:1053, 1/D3/1066:1067 | Single stack bend Not in a motif group | geometric IL_4WF9_007 IL_76488.2 | |
| IL_6ZQD_057 | 1/D3/1117:1119, 1/D4/6:7 | No text annotation Not in a motif group | ||
| IL_6ZQD_058 | 1/D3/1122:1123, 1/D4/1:3 | Single bulged U Not in a motif group | geometric IL_4LFB_046 IL_83039.13 | |
| IL_6ZQD_059 | 1/D3/1157:1160, 1/D3/1617:1621 | C-loop Not in a motif group | homologous IL_4V88_443 IL_63596.6 | |
| IL_6ZQD_060 | 1/D3/1173:1175, 1/D3/1464:1466 | No text annotation Not in a motif group | homologous IL_4V88_444 IL_95997.1 | |
| IL_6ZQD_061 | 1/D3/1495:1498, 1/D3/1509:1512 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_461 IL_30621.2 | |
| IL_6ZQD_062 | 1/D3/1540:1545, 1/D3/1566:1571 | No text annotation Not in a motif group | homologous IL_4V88_462 IL_19954.2 | |
| IL_6ZQD_063 | 1/D3/1550:1552, 1/D3/1559:1561 | UU cWW Not in a motif group | geometric IL_3SZX_003 IL_95997.1 | |
| IL_6ZQD_064 | 1/D3/1650:1652, 1/D3/1748:1750 | AA cWW Not in a motif group | homologous IL_4V88_467 IL_95997.1 | |
| IL_6ZQD_065 | 1/D3/1653:1658, 1/D3/1743:1747 | No text annotation Not in a motif group | ||
| IL_6ZQD_066 | 1/D3/1665:1667, 1/D3/1734:1736 | No text annotation Not in a motif group | homologous IL_4V88_470 IL_51629.2 | |
| IL_6ZQD_067 | 1/D3/1669:1672, 1/D3/1729:1732 | Double sheared Not in a motif group | geometric IL_1SAQ_002 IL_09705.9 | |
| IL_6ZQD_068 | 1/D3/1672:1674, 1/D3/1727:1729 | No text annotation Not in a motif group | homologous IL_4V88_472 IL_95997.1 | |
| IL_6ZQD_069 | 1/D3/1675:1678, 1/D3/1723:1726 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_4V88_473 IL_30621.2 | |
| IL_6ZQD_070 | 1/D3/1678:1682, 1/D3/1719:1723 | No text annotation Not in a motif group | ||
| IL_6ZQD_071 | 1/D3/1687:1693, 1/D3/1708:1714 | No text annotation Not in a motif group | ||
| IL_6ZQD_072 | 1/D3/1693:1696, 1/D3/1706:1708 | No text annotation Not in a motif group | ||
| IL_6ZQD_073 | 1/D3/1696:1697, 1/D3/1704:1706 | Single stack bend Not in a motif group | geometric IL_7A0S_054 IL_76488.2 | |
| IL_6ZQD_074 | 1/D4/78:85, 1/D4/325:329 | No text annotation Not in a motif group | ||
| IL_6ZQD_075 | 1/D4/97:98, 1/D4/317:319 | No text annotation Not in a motif group | ||
| IL_6ZQD_076 | 1/D4/111:115, 1/D4/252:259 | No text annotation Not in a motif group | ||
| IL_6ZQD_077 | 1/D4/139:142, 1/D4/169:171 | No text annotation Not in a motif group | ||
| IL_6ZQD_078 | 1/D4/144:146, 1/D4/166:167 | No text annotation Not in a motif group | ||
| IL_6ZQD_079 | 1/D4/148:150, 1/D4/163:164 | No text annotation Not in a motif group | ||
| IL_6ZQD_080 | 1/D4/177:178, 1/D4/187:189 | No text annotation Not in a motif group |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_6ZQD_001 | 1/D3/41:48, 1/D3/431:439, 1/D3/464:466 | No text annotation Not in a motif group | ||
| J3_6ZQD_002 | 1/D3/633:635, 1/D3/861:865, 1/D3/965:966 | No text annotation Not in a motif group | ||
| J3_6ZQD_003 | 1/D3/760:763, 1/D3/773:776, 1/D3/784:790 | No text annotation Not in a motif group | ||
| J3_6ZQD_004 | 1/D3/881:884, 1/D3/928:936, 1/D3/943:947 | No text annotation Not in a motif group | homologous J3_4V88_033 NA | |
| J3_6ZQD_005 | 1/D3/1037:1039, 1/D3/1079:1083, 1/D3/1090:1094 | No text annotation Not in a motif group | homologous J3_4V88_034 NA | |
| J3_6ZQD_006 | 1/D3/1150:1151, 1/D3/1627:1629, 1/D3/1636:1640 | No text annotation Not in a motif group | ||
| J3_6ZQD_007 | 1/D3/1168:1171, 1/D3/1468:1470, 1/D3/1574:1577 | No text annotation Not in a motif group | homologous J3_8C3A_039 NA | |
| J3_6ZQD_008 | 1/D3/1470:1474, 1/D3/1533:1540, 1/D3/1571:1574 | No text annotation Not in a motif group |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_6ZQD_009 | No text annotation |
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