1N34 | Motifs

Valid loops

#	loop id	location	annotation	motif
1	HL_1N34_001 ➜	1/A/12:22	NA	NA
2	HL_1N34_003 ➜	1/A/158:163	NA	NA
3	HL_1N34_004 ➜	1/A/190B:190G	NA	NA
4	HL_1N34_005 ➜	1/A/199:218	NA	NA
5	HL_1N34_006 ➜	1/A/259:267	NA	NA
6	HL_1N34_007 ➜	1/A/296:301	NA	NA
7	HL_1N34_008 ➜	1/A/320:333	NA	NA
8	HL_1N34_010 ➜	1/A/377:386	NA	NA
9	HL_1N34_011 ➜	1/A/419:424	NA	NA
10	HL_1N34_012 ➜	1/A/457:475	NA	NA
11	HL_1N34_013 ➜	1/A/522:527	NA	NA
12	HL_1N34_014 ➜	1/A/617:623	NA	NA
13	HL_1N34_015 ➜	1/A/689:698	NA	NA
14	HL_1N34_017 ➜	1/A/786:796	NA	NA
15	HL_1N34_018 ➜	1/A/838:848	NA	NA
16	HL_1N34_021 ➜	1/A/963:972	NA	NA
17	HL_1N34_024 ➜	1/A/1076:1081	NA	NA
18	HL_1N34_025 ➜	1/A/1089:1096	NA	NA
19	HL_1N34_027 ➜	1/A/1164:1172	NA	NA
20	HL_1N34_031 ➜	1/A/1449:1454	NA	NA
21	HL_1N34_032 ➜	1/A/1515:1520	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_1N34_002 ➜	missing nts	NA
2	HL_1N34_009 ➜	missing nts	NA
3	HL_1N34_016 ➜	all high RSRZ	NA
4	HL_1N34_019 ➜	all high RSRZ	NA
5	HL_1N34_020 ➜	all high RSRZ	NA
6	HL_1N34_022 ➜	all high RSRZ	NA
7	HL_1N34_023 ➜	missing nts	NA
8	HL_1N34_026 ➜	all high RSRZ	NA
9	HL_1N34_028 ➜	all high RSRZ	NA
10	HL_1N34_029 ➜	all high RSRZ	NA
11	HL_1N34_030 ➜	missing nts	NA

Valid loops

#	loop id	location	annotation	motif
1	IL_1N34_001 ➜	1/A/30:32,1/A/552:553	NA	NA
2	IL_1N34_002 ➜	1/A/44:45,1/A/396:398	NA	NA
3	IL_1N34_003 ➜	1/A/47:52,1/A/359:361	NA	NA
4	IL_1N34_004 ➜	1/A/54:57,1/A/355:357	NA	NA
5	IL_1N34_005 ➜	1/A/63:66,1/A/103:104	NA	NA
6	IL_1N34_006 ➜	1/A/67:69,1/A/99:102	NA	NA
7	IL_1N34_008 ➜	1/A/128:131,1/A/231:233	NA	NA
8	IL_1N34_009 ➜	1/A/132:136,1/A/227:230	NA	NA
9	IL_1N34_011 ➜	1/A/186:188,1/A/190K:191	NA	NA
10	IL_1N34_012 ➜	1/A/242:247,1/A/277:284	NA	NA
11	IL_1N34_013 ➜	1/A/248:252,1/A/274:276	NA	NA
12	IL_1N34_014 ➜	1/A/292:293,1/A/304:308	NA	NA
13	IL_1N34_016 ➜	1/A/370:375,1/A/389:391	NA	NA
14	IL_1N34_017 ➜	1/A/375:377,1/A/386:389	NA	NA
15	IL_1N34_019 ➜	1/A/409:417,1/A/426:433	NA	NA
16	IL_1N34_020 ➜	1/A/446:450,1/A/483:488	NA	NA
17	IL_1N34_021 ➜	1/A/450:456,1/A/476:483	NA	NA
18	IL_1N34_022 ➜	1/A/504:511,1/A/540:541	NA	NA
19	IL_1N34_024 ➜	1/A/515:521,1/A/528:536	NA	NA
20	IL_1N34_029 ➜	1/A/605:612,1/A/628:633	NA	NA
21	IL_1N34_032 ➜	1/A/662:666,1/A/740:743	NA	NA
22	IL_1N34_033 ➜	1/A/673:679,1/A/711:717	NA	NA
23	IL_1N34_034 ➜	1/A/683:688,1/A/699:707	NA	NA
24	IL_1N34_038 ➜	1/A/922:923,1/A/1393:1395	NA	NA
25	IL_1N34_039 ➜	1/A/925:927,1/A/1390:1391	NA	NA
26	IL_1N34_040 ➜	1/A/933:935,1/A/1380:1384	NA	NA
27	IL_1N34_042 ➜	1/A/953:954,1/A/1226:1228	NA	NA
28	IL_1N34_044 ➜	1/A/1047:1051,1/A/1207:1210	NA	NA
29	IL_1N34_045 ➜	1/A/1051:1056,1/A/1204:1207	NA	NA
30	IL_1N34_046 ➜	1/A/1056:1059,1/A/1198:1204	NA	NA
31	IL_1N34_047 ➜	1/A/1059:1061,1/A/1195:1198	NA	NA
32	IL_1N34_048 ➜	1/A/1061:1063,1/A/1193:1195	NA	NA
33	IL_1N34_049 ➜	1/A/1121:1128,1/A/1143:1152	NA	NA
34	IL_1N34_051 ➜	1/A/1247:1253,1/A/1284:1290	NA	NA
35	IL_1N34_052 ➜	1/A/1253:1258,1/A/1277:1284	NA	NA
36	IL_1N34_055 ➜	1/A/1303:1308,1/A/1329:1334	NA	NA
37	IL_1N34_057 ➜	1/A/1401:1404,1/A/1497:1501	NA	NA
38	IL_1N34_058 ➜	1/A/1404:1407,1/A/1494:1497	NA	NA
39	IL_1N34_059 ➜	1/A/1407:1409,1/A/1491:1494	NA	NA
40	IL_1N34_061 ➜	1/A/1412:1414,1/A/1486:1488	NA	NA
41	IL_1N34_062 ➜	1/A/1414:1416,1/A/1484:1486	NA	NA
42	IL_1N34_066 ➜	1/A/1435:1438,1/A/1463:1466	NA	NA
43	IL_1N34_067 ➜	1/A/1440:1447,1/A/1459:1461	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_1N34_007 ➜	missing nts	NA
2	IL_1N34_010 ➜	all high RSRZ	NA
3	IL_1N34_015 ➜	missing nts	NA
4	IL_1N34_018 ➜	complementary	NA
5	IL_1N34_023 ➜	complementary	NA
6	IL_1N34_025 ➜	all high RSRZ	NA
7	IL_1N34_026 ➜	all high RSRZ	NA
8	IL_1N34_027 ➜	all high RSRZ	NA
9	IL_1N34_028 ➜	all high RSRZ	NA
10	IL_1N34_030 ➜	all high RSRZ	NA
11	IL_1N34_031 ➜	all high RSRZ	NA
12	IL_1N34_035 ➜	all high RSRZ	NA
13	IL_1N34_036 ➜	all high RSRZ	NA
14	IL_1N34_037 ➜	all high RSRZ	NA
15	IL_1N34_041 ➜	all high RSRZ	NA
16	IL_1N34_043 ➜	missing nts	NA
17	IL_1N34_050 ➜	complementary	NA
18	IL_1N34_053 ➜	all high RSRZ	NA
19	IL_1N34_054 ➜	complementary	NA
20	IL_1N34_056 ➜	complementary	NA
21	IL_1N34_060 ➜	complementary	NA
22	IL_1N34_063 ➜	all high RSRZ	NA
23	IL_1N34_064 ➜	complementary	NA
24	IL_1N34_065 ➜	all high RSRZ	NA

Valid loops

#	loop id	location	annotation	motif
1	J3_1N34_001 ➜	1/A/826:829,1/A/857:861,1/A/868:874	NA	NA
2	J3_1N34_002 ➜	1/A/936:939,1/A/1344:1350,1/A/1372:1379	NA	NA
3	J3_1N34_003 ➜	1/A/941:946,1/A/1235:1237,1/A/1337:1342	NA	NA
4	J3_1N34_004 ➜	1/A/955:962,1/A/973:985,1/A/1220:1225	NA	NA
5	J3_1N34_007 ➜	1/A/1063:1068,1/A/1107:1113,1/A/1187:1193	NA	NA
6	J3_1N34_008 ➜	1/A/1116:1118,1/A/1155:1161,1/A/1175:1184	NA	NA
7	J3_1N34_009 ➜	1/A/1237:1241,1/A/1296:1303,1/A/1334:1337	NA	NA

Problematic loops

#	loop id	Problem	Sequence
1	J3_1N34_005 ➜	missing nts	NA
2	J3_1N34_006 ➜	missing nts	NA

1N34 Internal, Hairpin and 3-way Junction Loop Motifs

Valid loops

Problematic loops

Valid loops

Problematic loops

Valid loops

Problematic loops