1N34 | Motifs

Valid loops

#	loop id	location	motif
1	IL_1N34_001 ➜	1/A/30:32,1/A/552:553	NA
2	IL_1N34_002 ➜	1/A/44:45,1/A/396:398	NA
3	IL_1N34_003 ➜	1/A/47:52,1/A/359:361	NA
4	IL_1N34_004 ➜	1/A/54:57,1/A/355:357	NA
5	IL_1N34_005 ➜	1/A/63:66,1/A/103:104	NA
6	IL_1N34_006 ➜	1/A/67:69,1/A/99:102	NA
7	IL_1N34_008 ➜	1/A/128:131,1/A/231:233	NA
8	IL_1N34_009 ➜	1/A/132:136,1/A/227:230	NA
9	IL_1N34_011 ➜	1/A/186:188,1/A/190K:191	NA
10	IL_1N34_012 ➜	1/A/242:247,1/A/277:284	NA
11	IL_1N34_013 ➜	1/A/248:252,1/A/274:276	NA
12	IL_1N34_014 ➜	1/A/292:293,1/A/304:308	NA
13	IL_1N34_016 ➜	1/A/370:375,1/A/389:391	NA
14	IL_1N34_017 ➜	1/A/375:377,1/A/386:389	NA
15	IL_1N34_019 ➜	1/A/409:417,1/A/426:433	NA
16	IL_1N34_020 ➜	1/A/446:450,1/A/483:488	NA
17	IL_1N34_021 ➜	1/A/450:456,1/A/476:483	NA
18	IL_1N34_022 ➜	1/A/504:511,1/A/540:541	NA
19	IL_1N34_024 ➜	1/A/515:521,1/A/528:536	NA
20	IL_1N34_029 ➜	1/A/605:612,1/A/628:633	NA
21	IL_1N34_032 ➜	1/A/662:666,1/A/740:743	NA
22	IL_1N34_033 ➜	1/A/673:679,1/A/711:717	NA
23	IL_1N34_034 ➜	1/A/683:688,1/A/699:707	NA
24	IL_1N34_038 ➜	1/A/922:923,1/A/1393:1395	NA
25	IL_1N34_039 ➜	1/A/925:927,1/A/1390:1391	NA
26	IL_1N34_040 ➜	1/A/933:935,1/A/1380:1384	NA
27	IL_1N34_042 ➜	1/A/953:954,1/A/1226:1228	NA
28	IL_1N34_044 ➜	1/A/1047:1051,1/A/1207:1210	NA
29	IL_1N34_045 ➜	1/A/1051:1056,1/A/1204:1207	NA
30	IL_1N34_046 ➜	1/A/1056:1059,1/A/1198:1204	NA
31	IL_1N34_047 ➜	1/A/1059:1061,1/A/1195:1198	NA
32	IL_1N34_048 ➜	1/A/1061:1063,1/A/1193:1195	NA
33	IL_1N34_049 ➜	1/A/1121:1128,1/A/1143:1152	NA
34	IL_1N34_051 ➜	1/A/1247:1253,1/A/1284:1290	NA
35	IL_1N34_052 ➜	1/A/1253:1258,1/A/1277:1284	NA
36	IL_1N34_055 ➜	1/A/1303:1308,1/A/1329:1334	NA
37	IL_1N34_057 ➜	1/A/1401:1404,1/A/1497:1501	NA
38	IL_1N34_058 ➜	1/A/1404:1407,1/A/1494:1497	NA
39	IL_1N34_059 ➜	1/A/1407:1409,1/A/1491:1494	NA
40	IL_1N34_061 ➜	1/A/1412:1414,1/A/1486:1488	NA
41	IL_1N34_062 ➜	1/A/1414:1416,1/A/1484:1486	NA
42	IL_1N34_066 ➜	1/A/1435:1438,1/A/1463:1466	NA
43	IL_1N34_067 ➜	1/A/1440:1447,1/A/1459:1461	NA

Problematic loops

#	loop id	Problem	Sequence
1	IL_1N34_007 ➜	missing nts	69, 70, 73, 74, 75, 76, 77, 92, 93, 95, 96, 97, 98, 99
2	IL_1N34_010 ➜	all high RSRZ	148, 149, 150, 151, 152, 153, 168, 169, 170, 171, 172, 173, 174
3	IL_1N34_015 ➜	missing nts	CUCC,GGAG
4	IL_1N34_018 ➜	complementary	GGA,UCC
5	IL_1N34_023 ➜	complementary	CUCC,GGAG
6	IL_1N34_025 ➜	all high RSRZ	569, 570, 571, 572, 573, 574, 575, 880, 881
7	IL_1N34_026 ➜	all high RSRZ	580, 581, 582, 583, 584, 757, 758, 759, 760, 761
8	IL_1N34_027 ➜	all high RSRZ	594, 595, 596, 644, 645
9	IL_1N34_028 ➜	all high RSRZ	597, 598, 640, 641, 642, 643
10	IL_1N34_030 ➜	all high RSRZ	654, 655, 751, 752, 753, 754
11	IL_1N34_031 ➜	all high RSRZ	657, 658, 747, 748, 749
12	IL_1N34_035 ➜	all high RSRZ	774, 775, 776, 777, 778, 804, 805
13	IL_1N34_036 ➜	all high RSRZ	779, 780, 781, 782, 783, 784, 798, 799, 800, 801, 802, 803
14	IL_1N34_037 ➜	all high RSRZ	887, 888, 889, 890, 891, 892, 893, 894, 905, 906, 907, 908, 909, 910
15	IL_1N34_041 ➜	all high RSRZ	948, 949, 950, 1231, 1232, 1233
16	IL_1N34_043 ➜	missing nts	1028, 1029, 1030, 1031, 1032, 1033
17	IL_1N34_050 ➜	complementary	CCCG,CGGG
18	IL_1N34_053 ➜	all high RSRZ	1258, 1259, 1260, 1261, 1262, 1273, 1274, 1275, 1276, 1277
19	IL_1N34_054 ➜	complementary	CCG,CGG
20	IL_1N34_056 ➜	complementary	GUC,GAC
21	IL_1N34_060 ➜	complementary	CGCC,GGCG
22	IL_1N34_063 ➜	all high RSRZ	1416, 1417, 1418, 1419, 1481, 1482, 1483, 1484
23	IL_1N34_064 ➜	complementary	CGGGC,GCCCG
24	IL_1N34_065 ➜	all high RSRZ	1431, 1432, 1433, 1434, 1435, 1466, 1467, 1468, 1469

Valid loops

#	loop id	location	motif
1	HL_1N34_001 ➜	1/A/12:22	NA
2	HL_1N34_003 ➜	1/A/158:163	NA
3	HL_1N34_004 ➜	1/A/190B:190G	NA
4	HL_1N34_005 ➜	1/A/199:218	NA
5	HL_1N34_006 ➜	1/A/259:267	NA
6	HL_1N34_007 ➜	1/A/296:301	NA
7	HL_1N34_008 ➜	1/A/320:333	NA
8	HL_1N34_010 ➜	1/A/377:386	NA
9	HL_1N34_011 ➜	1/A/419:424	NA
10	HL_1N34_012 ➜	1/A/457:475	NA
11	HL_1N34_013 ➜	1/A/522:527	NA
12	HL_1N34_014 ➜	1/A/617:623	NA
13	HL_1N34_015 ➜	1/A/689:698	NA
14	HL_1N34_017 ➜	1/A/786:796	NA
15	HL_1N34_018 ➜	1/A/838:848	NA
16	HL_1N34_021 ➜	1/A/963:972	NA
17	HL_1N34_024 ➜	1/A/1076:1081	NA
18	HL_1N34_025 ➜	1/A/1089:1096	NA
19	HL_1N34_027 ➜	1/A/1164:1172	NA
20	HL_1N34_031 ➜	1/A/1449:1454	NA
21	HL_1N34_032 ➜	1/A/1515:1520	NA

Problematic loops

#	loop id	Problem	Sequence
1	HL_1N34_002 ➜	missing nts	79, 80, 81, 82, 83, 84, 88, 89, 90
2	HL_1N34_009 ➜	missing nts	342, 343, 344, 345, 346, 347
3	HL_1N34_016 ➜	all high RSRZ	726, 727, 728, 729, 730, 731
4	HL_1N34_019 ➜	all high RSRZ	862, 863, 864, 865, 866, 867
5	HL_1N34_020 ➜	all high RSRZ	897, 898, 899, 900, 901, 902
6	HL_1N34_022 ➜	all high RSRZ	1007, 1008, 1009, 1010, 1011, 1012, 1013, 1014, 1015, 1016, 1017, 1018, 1019, 1020, 1021, 1022
7	HL_1N34_023 ➜	missing nts	1030, 1030, 1030, 1030, 1030, 1031
8	HL_1N34_026 ➜	all high RSRZ	1128, 1129, 1130, 1131, 1132, 1133, 1134, 1135, 1136, 1137, 1138, 1139, 1140, 1141, 1142, 1143
9	HL_1N34_028 ➜	all high RSRZ	1265, 1266, 1267, 1268, 1269, 1270
10	HL_1N34_029 ➜	all high RSRZ	1314, 1315, 1316, 1317, 1318, 1319, 1320, 1321, 1322, 1323
11	HL_1N34_030 ➜	missing nts	1356, 1357, 1358, 1359, 1360, 1361, 1361, 1362, 1363, 1364, 1365, 1366

Valid loops

#	loop id	location	motif
1	J3_1N34_001 ➜	1/A/826:829,1/A/857:861,1/A/868:874	NA
2	J3_1N34_002 ➜	1/A/936:939,1/A/1344:1350,1/A/1372:1379	NA
3	J3_1N34_003 ➜	1/A/941:946,1/A/1235:1237,1/A/1337:1342	NA
4	J3_1N34_004 ➜	1/A/955:962,1/A/973:985,1/A/1220:1225	NA
5	J3_1N34_007 ➜	1/A/1063:1068,1/A/1107:1113,1/A/1187:1193	NA
6	J3_1N34_008 ➜	1/A/1116:1118,1/A/1155:1161,1/A/1175:1184	NA
7	J3_1N34_009 ➜	1/A/1237:1241,1/A/1296:1303,1/A/1334:1337	NA

Problematic loops

#	loop id	Problem	Sequence
1	J3_1N34_005 ➜	missing nts	989, 990, 991, 992, 993, 994, 995, 996, 997, 998, 999, 1000, 1041, 1042, 1043, 1044, 1045, 1046, 1047, 1210, 1211, 1212, 1213, 1214, 1215, 1216
2	J3_1N34_006 ➜	missing nts	1001, 1002, 1003, 1003, 1004, 1005, 1006, 1007, 1022, 1023, 1024, 1025, 1026, 1027, 1028, 1033, 1034, 1035, 1036, 1037, 1038, 1039, 1040