5NCO Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5NCO_001 | 1/1/52:57 | GNRA Not in a motif group | geometric HL_4V9F_023 HL_43074.18 | |
| HL_5NCO_002 | 1/A/59:68 | No text annotation Not in a motif group | homologous HL_5J7L_134 HL_29414.1 | |
| HL_5NCO_003 | 1/A/87:95 | No text annotation Not in a motif group | homologous HL_5J7L_135 HL_17926.5 | |
| HL_5NCO_004 | 1/A/123:128 | No text annotation Not in a motif group | homologous HL_5J7L_136 HL_62869.3 | |
| HL_5NCO_005 | 1/A/138:141 | No text annotation Not in a motif group | geometric HL_5TBW_068 HL_46546.1 | |
| HL_5NCO_006 | 1/A/158:168 | No text annotation Not in a motif group | homologous HL_5J7L_138 HL_81820.1 | |
| HL_5NCO_007 | 1/A/194:201 | No text annotation Not in a motif group | homologous HL_5J7L_139 HL_23481.5 | |
| HL_5NCO_008 | 1/A/225:230 | No text annotation Not in a motif group | homologous HL_5J7L_140 HL_35894.3 | |
| HL_5NCO_009 | 1/A/246:252 | No text annotation Not in a motif group | homologous HL_5J7L_141 HL_67216.5 | |
| HL_5NCO_010 | 1/A/305:312 | T-loop with 1 bulged base Not in a motif group | homologous HL_5J7L_142 HL_68493.6 | |
| HL_5NCO_011 | 1/A/319:323 | No text annotation Not in a motif group | homologous HL_5J7L_143 HL_98557.5 | |
| HL_5NCO_012 | 1/A/327:335 | No text annotation Not in a motif group | homologous HL_4WF9_012 HL_08002.6 | |
| HL_5NCO_013 | 1/A/381:393 | No text annotation Not in a motif group | ||
| HL_5NCO_014 | 1/A/410:417 | No text annotation Not in a motif group | homologous HL_5J7L_146 HL_32512.8 | |
| HL_5NCO_015 | 1/A/462:467 | GNRA Not in a motif group | homologous HL_4WF9_015 HL_43074.18 | |
| HL_5NCO_016 | 1/A/487:493 | No text annotation Not in a motif group | homologous HL_5J7L_148 HL_68304.6 | |
| HL_5NCO_017 | 1/A/566:575 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_150 HL_33239.17 | |
| HL_5NCO_018 | 1/A/611:617 | No text annotation Not in a motif group | geometric HL_361D_002 HL_18218.2 | |
| HL_5NCO_019 | 1/A/629:634 | GNRA Not in a motif group | homologous HL_5J7L_152 HL_43074.18 | |
| HL_5NCO_020 | 1/A/641:647 | No text annotation Not in a motif group | homologous HL_7RQB_021 HL_02361.6 | |
| HL_5NCO_021 | 1/A/712:719 | No text annotation Not in a motif group | homologous HL_5J7L_154 HL_93727.5 | |
| HL_5NCO_022 | 1/A/744:753 | No text annotation Not in a motif group | homologous HL_7A0S_022 HL_39334.5 | |
| HL_5NCO_023 | 1/A/779:785 | No text annotation Not in a motif group | homologous HL_5J7L_156 HL_16898.3 | |
| HL_5NCO_024 | 1/A/826:831 | No text annotation Not in a motif group | homologous HL_4WF9_025 HL_15942.5 | |
| HL_5NCO_025 | 1/A/955:962 | GNRA Not in a motif group | homologous HL_4WF9_027 HL_43074.18 | |
| HL_5NCO_026 | 1/A/978:985 | No text annotation Not in a motif group | homologous HL_5J7L_160 HL_72451.5 | |
| HL_5NCO_027 | 1/A/1064:1074 | No text annotation Not in a motif group | homologous HL_5J7L_161 HL_92304.3 | |
| HL_5NCO_028 | 1/A/1092:1099 | No text annotation Not in a motif group | homologous HL_1MMS_002 HL_93727.5 | |
| HL_5NCO_030 | 1/A/1222:1227 | Other HL Not in a motif group | homologous HL_5J7L_164 HL_43074.18 | |
| HL_5NCO_031 | 1/A/1281:1289 | T-loop with 2 stacked bulged bases Not in a motif group | homologous HL_5J7L_165 HL_33239.17 | |
| HL_5NCO_032 | 1/A/1324:1330 | No text annotation Not in a motif group | homologous HL_5J7L_166 HL_86880.5 | |
| HL_5NCO_033 | 1/A/1363:1368 | Other HL Not in a motif group | homologous HL_5J7L_167 HL_43074.18 | |
| HL_5NCO_034 | 1/A/1389:1398 | No text annotation Not in a motif group | homologous HL_5J7L_168 HL_78457.4 | |
| HL_5NCO_035 | 1/A/1451:1459 | No text annotation Not in a motif group | geometric HL_5J7L_169 HL_71540.1 | |
| HL_5NCO_036 | 1/A/1492:1498 | No text annotation Not in a motif group | homologous HL_5J7L_170 HL_86880.5 | |
| HL_5NCO_037 | 1/A/1533:1538 | UNCG Not in a motif group | homologous HL_5J7L_171 HL_79299.11 | |
| HL_5NCO_038 | 1/A/1565:1568 | No text annotation Not in a motif group | homologous HL_7RQB_039 HL_69353.7 | |
| HL_5NCO_039 | 1/A/1612:1619 | No text annotation Not in a motif group | homologous HL_7RQB_040 HL_66171.3 | |
| HL_5NCO_040 | 1/A/1630:1636 | GNRA with one bulged base Not in a motif group | homologous HL_5J7L_174 HL_02361.6 | |
| HL_5NCO_041 | 1/A/1691:1696 | No text annotation Not in a motif group | homologous HL_7RQB_042 HL_79299.11 | |
| HL_5NCO_042 | 1/A/1727:1733 | No text annotation Not in a motif group | geometric HL_5J7L_018 HL_93229.1 | |
| HL_5NCO_043 | 1/A/1752:1756 | No text annotation Not in a motif group | homologous HL_5J7L_177 HL_79272.3 | |
| HL_5NCO_044 | 1/A/1777:1787 | No text annotation Not in a motif group | homologous HL_5J7L_178 HL_43613.4 | |
| HL_5NCO_045 | 1/A/1806:1811 | No text annotation Not in a motif group | homologous HL_5J7L_179 HL_32527.3 | |
| HL_5NCO_046 | 1/A/1868:1873 | Other HL Not in a motif group | homologous HL_5J7L_180 HL_43074.18 | |
| HL_5NCO_048 | 1/A/1949:1957 | No text annotation Not in a motif group | homologous HL_5J7L_182 HL_53760.4 | |
| HL_5NCO_049 | 1/A/2027:2036 | No text annotation Not in a motif group | homologous HL_4WF9_047 HL_90642.5 | |
| HL_5NCO_050 | 1/A/2143:2148 | No text annotation Not in a motif group | homologous HL_5J7L_184 NA | |
| HL_5NCO_051 | 1/A/2209:2215 | No text annotation Not in a motif group | homologous HL_5J7L_185 HL_16845.5 | |
| HL_5NCO_052 | 1/A/2248:2256 | No text annotation Not in a motif group | homologous HL_7A0S_052 HL_46891.3 | |
| HL_5NCO_053 | 1/A/2264:2276 | No text annotation Not in a motif group | homologous HL_7RQB_054 HL_19870.5 | |
| HL_5NCO_054 | 1/A/2303:2313 | No text annotation Not in a motif group | homologous HL_5J7L_188 HL_11805.3 | |
| HL_5NCO_055 | 1/A/2324:2331 | No text annotation Not in a motif group | homologous HL_5J7L_189 HL_46142.8 | |
| HL_5NCO_056 | 1/A/2356:2361 | Other HL Not in a motif group | homologous HL_5J7L_190 HL_43074.18 | |
| HL_5NCO_057 | 1/A/2374:2379 | GNRA Not in a motif group | homologous HL_5J7L_191 HL_43074.18 | |
| HL_5NCO_058 | 1/A/2404:2413 | No text annotation Not in a motif group | homologous HL_5J7L_192 HL_48376.4 | |
| HL_5NCO_059 | 1/A/2471:2479 | No text annotation Not in a motif group | homologous HL_4WF9_056 HL_36421.5 | |
| HL_5NCO_060 | 1/A/2528:2535 | No text annotation Not in a motif group | homologous HL_5J7L_194 HL_92681.5 | |
| HL_5NCO_061 | 1/A/2551:2557 | No text annotation Not in a motif group | homologous HL_4WF9_058 HL_26055.6 | |
| HL_5NCO_062 | 1/A/2594:2599 | No text annotation Not in a motif group | homologous HL_7RQB_063 HL_43074.18 | |
| HL_5NCO_063 | 1/A/2658:2663 | GNRA Not in a motif group | homologous HL_5J7L_197 HL_43074.18 | |
| HL_5NCO_064 | 1/A/2701:2706 | Ribsomal LSU H95 Not in a motif group | homologous HL_5J7L_198 HL_67719.1 | |
| HL_5NCO_065 | 1/A/2745:2759 | No text annotation Not in a motif group | homologous HL_5J7L_199 HL_56677.5 | |
| HL_5NCO_066 | 1/A/2796:2799 | No text annotation Not in a motif group | geometric HL_5TBW_068 HL_46546.1 | |
| HL_5NCO_067 | 1/A/2819:2827 | No text annotation Not in a motif group | homologous HL_5J7L_201 HL_05018.6 | |
| HL_5NCO_068 | 1/A/2856:2861 | Other HL Not in a motif group | homologous HL_5J7L_202 HL_43074.18 | |
| HL_5NCO_069 | 1/B/38:44 | No text annotation Not in a motif group | geometric HL_5NFV_001 HL_58912.1 | |
| HL_5NCO_070 | 1/B/86:90 | No text annotation Not in a motif group | homologous HL_5J7L_204 HL_36982.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5NCO_029 | No text annotation | ||
| HL_5NCO_047 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5NCO_001 | 1/1/16:17, 1/1/93:95 | Single bulged U Not in a motif group | geometric IL_4C7O_001 IL_83039.11 | |
| IL_5NCO_002 | 1/1/17:18, 1/1/91:93 | Single stack bend Not in a motif group | geometric IL_4C7O_002 IL_72766.2 | |
| IL_5NCO_003 | 1/1/21:22, 1/1/86:88 | Single bulged C Not in a motif group | geometric IL_4C7O_003 IL_61258.10 | |
| IL_5NCO_004 | 1/1/35:43, 1/1/66:71 | No text annotation Not in a motif group | ||
| IL_5NCO_005 | 1/1/45:50, 1/1/59:64 | tSH-tHW-tHS-cWW Not in a motif group | geometric IL_1MFQ_007 IL_76308.3 | |
| IL_5NCO_006 | 1/A/24:30, 1/A/510:516 | Triple sheared with non-canonical cWW Not in a motif group | geometric IL_5J7L_245 IL_66414.5 | |
| IL_5NCO_007 | 1/A/36:37, 1/A/442:444 | Single bulged A Not in a motif group | homologous IL_7RQB_002 IL_80007.16 | |
| IL_5NCO_008 | 1/A/43:44, 1/A/434:436 | Minor groove platform Not in a motif group | homologous IL_5J7L_247 IL_06437.11 | |
| IL_5NCO_009 | 1/A/81:85, 1/A/97:105 | No text annotation Not in a motif group | homologous IL_5J7L_248 IL_85931.1 | |
| IL_5NCO_010 | 1/A/183:184, 1/A/212:214 | Single stack bend Not in a motif group | homologous IL_4WF9_007 IL_04038.4 | |
| IL_5NCO_011 | 1/A/188:194, 1/A/201:208 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | geometric IL_5J7L_250 IL_04346.5 | |
| IL_5NCO_012 | 1/A/239:245, 1/A/253:258 | 7x6 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_251 IL_35110.5 | |
| IL_5NCO_013 | 1/A/269:271, 1/A/366:370 | No text annotation Not in a motif group | homologous IL_5J7L_252 IL_47972.1 | |
| IL_5NCO_014 | 1/A/274:281, 1/A/359:363 | No text annotation Not in a motif group | homologous IL_5J7L_253 IL_77870.1 | |
| IL_5NCO_015 | 1/A/293:295, 1/A/343:347 | No text annotation Not in a motif group | homologous IL_5J7L_254 IL_69440.1 | |
| IL_5NCO_016 | 1/A/481:484, 1/A/496:509 | No text annotation Not in a motif group | geometric IL_5J7L_255 IL_60992.5 | |
| IL_5NCO_017 | 1/A/536:539, 1/A/554:557 | Double sheared Not in a motif group | homologous IL_5J7L_256 IL_09705.7 | |
| IL_5NCO_018 | 1/A/564:566, 1/A/575:577 | No text annotation Not in a motif group | geometric IL_5J7L_257 IL_01312.13 | |
| IL_5NCO_019 | 1/A/606:610, 1/A/618:622 | AAA cross-strand stack Not in a motif group | homologous IL_5J7L_258 IL_56467.6 | |
| IL_5NCO_020 | 1/A/672:674, 1/A/806:808 | No text annotation Not in a motif group | homologous IL_4WF9_020 IL_01312.13 | |
| IL_5NCO_021 | 1/A/674:678, 1/A/799:806 | No text annotation Not in a motif group | geometric IL_7RQB_018 IL_17470.5 | |
| IL_5NCO_022 | 1/A/697:698, 1/A/763:765 | Single bulged A Not in a motif group | geometric IL_5J7L_261 IL_80007.16 | |
| IL_5NCO_023 | 1/A/702:703, 1/A/728:730 | Single bulged G Not in a motif group | homologous IL_5J7L_262 IL_59137.10 | |
| IL_5NCO_024 | 1/A/703:707, 1/A/724:728 | Triple sheared Not in a motif group | geometric IL_4WF9_024 IL_56467.6 | |
| IL_5NCO_025 | 1/A/738:740, 1/A/757:758 | Major groove platform Not in a motif group | homologous IL_4WF9_026 IL_80663.10 | |
| IL_5NCO_026 | 1/A/775:777, 1/A/787:791 | Multiple bulged bases Not in a motif group | geometric IL_5J7L_265 IL_90991.5 | |
| IL_5NCO_027 | 1/A/837:838, 1/A/940:942 | Single stack bend Not in a motif group | homologous IL_5J7L_266 IL_04038.4 | |
| IL_5NCO_028 | 1/A/844:847, 1/A/933:934 | No text annotation Not in a motif group | ||
| IL_5NCO_029 | 1/A/847:848, 1/A/930:933 | Stack outside cWW Not in a motif group | geometric IL_5J7L_268 IL_37629.1 | |
| IL_5NCO_030 | 1/A/849:851, 1/A/926:929 | No text annotation Not in a motif group | geometric IL_4P3T_002 IL_87332.1 | |
| IL_5NCO_031 | 1/A/856:862, 1/A/915:921 | 7x7 Sarcin-Ricin with intercalated A; G-bulge Not in a motif group | homologous IL_5J7L_270 IL_93830.2 | |
| IL_5NCO_032 | 1/A/862:863, 1/A/913:915 | Single bulged G Not in a motif group | geometric IL_5J7L_271 IL_59137.10 | |
| IL_5NCO_033 | 1/A/864:868, 1/A/909:912 | C-loop Not in a motif group | homologous IL_5J7L_272 IL_63596.4 | |
| IL_5NCO_034 | 1/A/870:872, 1/A/905:907 | No text annotation Not in a motif group | homologous IL_5J7L_273 IL_01312.13 | |
| IL_5NCO_037 | 1/A/994:996, 1/A/1159:1160 | Single bulged C Not in a motif group | homologous IL_4WF9_035 IL_61258.10 | |
| IL_5NCO_038 | 1/A/998:1002, 1/A/1153:1157 | UAA/GAN Not in a motif group | homologous IL_5J7L_277 IL_53523.5 | |
| IL_5NCO_039 | 1/A/1004:1011, 1/A/1150:1151 | SSU/LSU pseudoknot Not in a motif group | geometric IL_5J7L_278 IL_15861.6 | |
| IL_5NCO_040 | 1/A/1011:1013, 1/A/1149:1150 | Single bulged U Not in a motif group | homologous IL_5J7L_279 IL_83039.11 | |
| IL_5NCO_041 | 1/A/1018:1024, 1/A/1140:1144 | No text annotation Not in a motif group | homologous IL_5J7L_280 IL_57188.3 | |
| IL_5NCO_042 | 1/A/1024:1030, 1/A/1124:1140 | No text annotation Not in a motif group | geometric IL_5J7L_281 IL_22615.1 | |
| IL_5NCO_043 | 1/A/1031:1034, 1/A/1121:1123 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_282 IL_55456.1 | |
| IL_5NCO_044 | 1/A/1038:1041, 1/A/1114:1117 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_283 IL_85877.10 | |
| IL_5NCO_046 | 1/A/1059:1062, 1/A/1076:1079 | No text annotation Not in a motif group | homologous IL_1MMS_001 IL_23544.2 | |
| IL_5NCO_047 | 1/A/1087:1090, 1/A/1101:1102 | Major groove platform Not in a motif group | geometric IL_4V9F_044 IL_80663.10 | |
| IL_5NCO_048 | 1/A/1196:1198, 1/A/1247:1250 | Isolated cWS basepair Not in a motif group | homologous IL_5J7L_286 IL_67621.5 | |
| IL_5NCO_049 | 1/A/1202:1206, 1/A/1240:1243 | No text annotation Not in a motif group | homologous IL_5J7L_287 IL_91920.1 | |
| IL_5NCO_050 | 1/A/1208:1215, 1/A/1234:1238 | Kink-turn Not in a motif group | homologous IL_5J7L_288 IL_29549.9 | |
| IL_5NCO_051 | 1/A/1262:1269, 1/A/2011:2017 | 8x7 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_289 IL_04346.5 | |
| IL_5NCO_052 | 1/A/1310:1313, 1/A/1603:1604 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_290 IL_70995.6 | |
| IL_5NCO_053 | 1/A/1319:1323, 1/A/1331:1333 | C-loop Not in a motif group | homologous IL_5J7L_291 IL_08376.2 | |
| IL_5NCO_054 | 1/A/1351:1355, 1/A/1376:1380 | UAA/GAN Not in a motif group | homologous IL_5J7L_292 IL_34907.2 | |
| IL_5NCO_055 | 1/A/1357:1361, 1/A/1370:1374 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_293 IL_39521.5 | |
| IL_5NCO_056 | 1/A/1415:1416, 1/A/1582:1587 | No text annotation Not in a motif group | homologous IL_5J7L_294 IL_90348.1 | |
| IL_5NCO_057 | 1/A/1417:1421, 1/A/1577:1581 | UAA/GAN Not in a motif group | homologous IL_5J7L_295 IL_53523.5 | |
| IL_5NCO_058 | 1/A/1432:1435, 1/A/1557:1561 | Tandem non-canonical cWW pairs Not in a motif group | homologous IL_5J7L_296 IL_85877.10 | |
| IL_5NCO_059 | 1/A/1437:1440, 1/A/1551:1555 | tSH-tHW Not in a motif group | homologous IL_5J7L_297 IL_08757.3 | |
| IL_5NCO_060 | 1/A/1450:1451, 1/A/1459:1461 | Single bulged U Not in a motif group | homologous IL_5J7L_298 IL_83039.11 | |
| IL_5NCO_061 | 1/A/1468:1471, 1/A/1520:1524 | No text annotation Not in a motif group | homologous IL_5J7L_299 IL_68574.2 | |
| IL_5NCO_062 | 1/A/1474:1478, 1/A/1513:1517 | tSH-tHW-tHS Not in a motif group | homologous IL_5J7L_300 IL_39521.5 | |
| IL_5NCO_063 | 1/A/1481:1482, 1/A/1507:1510 | No text annotation Not in a motif group | homologous IL_5J7L_301 IL_67474.3 | |
| IL_5NCO_064 | 1/A/1489:1491, 1/A/1499:1500 | Major groove platform Not in a motif group | geometric IL_4OQU_002 IL_80663.10 | |
| IL_5NCO_065 | 1/A/1526:1529, 1/A/1542:1546 | UAA/GAN variation Not in a motif group | homologous IL_5J7L_303 IL_81389.2 | |
| IL_5NCO_066 | 1/A/1651:1656, 1/A/2004:2006 | No text annotation Not in a motif group | homologous IL_5J7L_304 IL_12566.2 | |
| IL_5NCO_067 | 1/A/1663:1665, 1/A/1995:1997 | Isolated tWW turn Not in a motif group | homologous IL_5J7L_305 IL_54997.5 | |
| IL_5NCO_068 | 1/A/1666:1669, 1/A/1993:1994 | Major groove platform; stack outside cWW Not in a motif group | homologous IL_5J7L_306 IL_80663.10 | |
| IL_5NCO_069 | 1/A/1669:1674, 1/A/1990:1993 | Intercalated tWH Not in a motif group | geometric IL_5J7L_307 IL_01312.13 | |
| IL_5NCO_070 | 1/A/1686:1691, 1/A/1696:1702 | tSH-tSH-tHH-tHS Not in a motif group | geometric IL_5J7L_308 IL_66584.5 | |
| IL_5NCO_071 | 1/A/1712:1718, 1/A/1742:1746 | 6x5 Sarcin-Ricin; G-bulge Not in a motif group | homologous IL_5J7L_309 IL_88269.2 | |
| IL_5NCO_072 | 1/A/1720:1724, 1/A/1736:1740 | Triple sheared Not in a motif group | homologous IL_5J7L_310 IL_56467.6 | |
| IL_5NCO_073 | 1/A/1770:1771, 1/A/1980:1982 | Single bulged A Not in a motif group | homologous IL_7A0S_064 IL_80007.16 | |
| IL_5NCO_074 | 1/A/1798:1804, 1/A/1813:1821 | Kink-turn related Not in a motif group | homologous IL_5J7L_313 IL_17069.3 | |
| IL_5NCO_075 | 1/A/1837:1840, 1/A/1902:1903 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_314 IL_06437.11 | |
| IL_5NCO_076 | 1/A/1841:1842, 1/A/1898:1901 | Major groove outside cWW, minor groove, intercalation pocket Not in a motif group | homologous IL_5J7L_315 IL_13730.12 | |
| IL_5NCO_078 | 1/A/1864:1867, 1/A/1874:1878 | UAA/GAN related Not in a motif group | homologous IL_5J7L_317 IL_81389.2 | |
| IL_5NCO_079 | 1/A/1933:1934, 1/A/1964:1967 | Multiple bulged bases Not in a motif group | geometric IL_7RQB_076 IL_69632.1 | |
| IL_5NCO_080 | 1/A/1934:1945, 1/A/1961:1964 | No text annotation Not in a motif group | homologous IL_7A0S_072 IL_07097.1 | |
| IL_5NCO_081 | 1/A/2050:2052, 1/A/2617:2618 | Major groove platform Not in a motif group | homologous IL_7RQB_078 IL_80663.10 | |
| IL_5NCO_082 | 1/A/2054:2056, 1/A/2612:2615 | No text annotation Not in a motif group | homologous IL_5J7L_321 IL_54678.3 | |
| IL_5NCO_083 | 1/A/2067:2069, 1/A/2442:2443 | Single bulged U Not in a motif group | homologous IL_7A0S_075 IL_83039.11 | |
| IL_5NCO_084 | 1/A/2070:2071, 1/A/2438:2441 | Minor groove platform Not in a motif group | homologous IL_7RQB_081 IL_06437.11 | |
| IL_5NCO_085 | 1/A/2081:2083, 1/A/2236:2239 | Isolated tHS basepair with bulges Not in a motif group | homologous IL_5J7L_325 IL_38958.6 | |
| IL_5NCO_086 | 1/A/2085:2087, 1/A/2232:2234 | No text annotation Not in a motif group | homologous IL_7RQB_083 IL_01312.13 | |
| IL_5NCO_089 | 1/A/2202:2204, 1/A/2220:2221 | Single bulged U Not in a motif group | homologous IL_5J7L_331 IL_21340.1 | |
| IL_5NCO_090 | 1/A/2297:2299, 1/A/2317:2321 | No text annotation Not in a motif group | homologous IL_5J7L_332 IL_56105.1 | |
| IL_5NCO_091 | 1/A/2350:2353, 1/A/2364:2367 | Double sheared Not in a motif group | homologous IL_5J7L_333 IL_09705.7 | |
| IL_5NCO_092 | 1/A/2401:2403, 1/A/2414:2415 | Single bulged U Not in a motif group | homologous IL_4WF9_088 IL_21340.1 | |
| IL_5NCO_093 | 1/A/2453:2454, 1/A/2498:2500 | Single stack bend Not in a motif group | geometric IL_4WF9_089 IL_04038.4 | |
| IL_5NCO_094 | 1/A/2454:2455, 1/A/2496:2498 | Major groove platform Not in a motif group | homologous IL_7RQB_092 IL_80663.10 | |
| IL_5NCO_095 | 1/A/2457:2459, 1/A/2493:2494 | Major groove platform Not in a motif group | geometric IL_7A0S_085 IL_80663.10 | |
| IL_5NCO_096 | 1/A/2459:2461, 1/A/2489:2493 | Major groove minor groove platform with extra cWW Not in a motif group | homologous IL_5J7L_337 IL_96042.4 | |
| IL_5NCO_097 | 1/A/2466:2470, 1/A/2480:2484 | Triple sheared Not in a motif group | homologous IL_5J7L_338 IL_56467.6 | |
| IL_5NCO_098 | 1/A/2507:2508, 1/A/2580:2582 | Major groove platform Not in a motif group | homologous IL_4WF9_094 IL_02060.4 | |
| IL_5NCO_099 | 1/A/2510:2512, 1/A/2574:2578 | Isolated non-canonical cWW with bulges Not in a motif group | homologous IL_5J7L_340 IL_01312.13 | |
| IL_5NCO_100 | 1/A/2512:2513, 1/A/2571:2574 | No text annotation Not in a motif group | geometric IL_5J7L_341 IL_44093.1 | |
| IL_5NCO_101 | 1/A/2522:2523, 1/A/2540:2543 | Minor groove platform with intercalation Not in a motif group | homologous IL_5J7L_342 IL_95601.1 | |
| IL_5NCO_102 | 1/A/2591:2592, 1/A/2601:2603 | Single bulged A Not in a motif group | homologous IL_7RQB_101 IL_80007.16 | |
| IL_5NCO_103 | 1/A/2636:2640, 1/A/2774:2782 | No text annotation Not in a motif group | homologous IL_5J7L_345 IL_03420.1 | |
| IL_5NCO_104 | 1/A/2652:2658, 1/A/2663:2668 | Sarcin-Ricin target in LSU H95; G-bulge Not in a motif group | geometric IL_5J7L_346 IL_35110.5 | |
| IL_5NCO_105 | 1/A/2680:2684, 1/A/2725:2727 | C-loop Not in a motif group | homologous IL_5J7L_347 IL_63596.4 | |
| IL_5NCO_106 | 1/A/2687:2691, 1/A/2718:2722 | No text annotation Not in a motif group | homologous IL_5J7L_348 IL_08296.3 | |
| IL_5NCO_107 | 1/A/2695:2696, 1/A/2711:2714 | Multiple bulged bases Not in a motif group | homologous IL_5J7L_349 IL_13730.12 | |
| IL_5NCO_108 | 1/A/2737:2742, 1/A/2762:2767 | UAA/GAN with extra cWW Not in a motif group | homologous IL_5J7L_350 IL_49767.4 | |
| IL_5NCO_109 | 1/A/2795:2796, 1/A/2799:2801 | Single bulged A Not in a motif group | geometric IL_4WF9_022 IL_80007.16 | |
| IL_5NCO_110 | 1/A/2806:2811, 1/A/2889:2892 | No text annotation Not in a motif group | homologous IL_5J7L_351 IL_82988.1 | |
| IL_5NCO_111 | 1/A/2838:2839, 1/A/2878:2880 | Major groove intercalation Not in a motif group | homologous IL_5J7L_352 IL_80663.10 | |
| IL_5NCO_112 | 1/A/2843:2846, 1/A/2870:2874 | Multiple bulged bases with non-canonical cWW Not in a motif group | homologous IL_5J7L_353 IL_58764.1 | |
| IL_5NCO_113 | 1/A/2847:2852, 1/A/2865:2869 | No text annotation Not in a motif group | homologous IL_5J7L_354 IL_83162.3 | |
| IL_5NCO_114 | 1/B/17:18, 1/B/65:67 | Major groove intercalation Not in a motif group | homologous IL_5J7L_355 IL_40508.4 | |
| IL_5NCO_115 | 1/B/23:28, 1/B/56:60 | No text annotation Not in a motif group | homologous IL_5J7L_356 IL_18472.1 | |
| IL_5NCO_116 | 1/B/30:31, 1/B/51:54 | Major groove minor groove platform; mini C-loop Not in a motif group | homologous IL_5J7L_357 IL_09061.4 | |
| IL_5NCO_117 | 1/B/34:38, 1/B/44:48 | Symmetric double minor groove platform Not in a motif group | homologous IL_5J7L_358 IL_58103.5 | |
| IL_5NCO_118 | 1/B/71:79, 1/B/97:105 | Bacterial 5S Loop E Not in a motif group | homologous IL_5J7L_359 IL_56455.3 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5NCO_035 | Triple sheared | ||
| IL_5NCO_036 | Isolated tHS basepair with bulges | ||
| IL_5NCO_045 | Kink-turn | ||
| IL_5NCO_077 | Major groove minor groove platform; mini C-loop | ||
| IL_5NCO_087 | No text annotation | ||
| IL_5NCO_088 | Kink-turn |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5NCO_001 | 1/A/30:31, 1/A/474:481, 1/A/509:510 | No text annotation Not in a motif group | homologous J3_7RQB_001 NA | |
| J3_5NCO_002 | 1/A/56:57, 1/A/70:76, 1/A/110:114 | No text annotation Not in a motif group | homologous J3_5J7L_037 NA | |
| J3_5NCO_003 | 1/A/683:689, 1/A/773:775, 1/A/791:794 | No text annotation Not in a motif group | homologous J3_5J7L_038 NA | |
| J3_5NCO_004 | 1/A/698:700, 1/A/732:736, 1/A/760:763 | No text annotation Not in a motif group | homologous J3_7RQB_005 NA | |
| J3_5NCO_005 | 1/A/1055:1057, 1/A/1081:1087, 1/A/1102:1104 | No text annotation Not in a motif group | homologous J3_5J7L_040 NA | |
| J3_5NCO_006 | 1/A/1298:1303, 1/A/1625:1627, 1/A/1639:1642 | No text annotation Not in a motif group | homologous J3_5J7L_041 NA | |
| J3_5NCO_007 | 1/A/1306:1309, 1/A/1605:1611, 1/A/1620:1622 | No text annotation Not in a motif group | homologous J3_7A0S_007 NA | |
| J3_5NCO_008 | 1/A/1344:1349, 1/A/1382:1385, 1/A/1402:1403 | No text annotation Not in a motif group | homologous J3_5J7L_043 NA | |
| J3_5NCO_009 | 1/A/2091:2093, 1/A/2196:2200, 1/A/2223:2228 | No text annotation Not in a motif group | homologous J3_5J7L_044 NA | |
| J3_5NCO_010 | 1/A/2295:2297, 1/A/2321:2323, 1/A/2332:2337 | No text annotation Not in a motif group | ||
| J3_5NCO_011 | 1/A/2517:2520, 1/A/2545:2547, 1/A/2561:2567 | No text annotation Not in a motif group | homologous J3_5J7L_046 NA | |
| J3_5NCO_012 | 1/A/2789:2791, 1/A/2805:2806, 1/A/2892:2894 | No text annotation Not in a motif group | ||
| J3_5NCO_013 | 1/A/2812:2815, 1/A/2831:2836, 1/A/2882:2888 | No text annotation Not in a motif group | homologous J3_5J7L_048 NA | |
| J3_5NCO_014 | 1/B/10:16, 1/B/68:70, 1/B/106:110 | No text annotation Not in a motif group | homologous J3_5J7L_049 NA |
Problematic loops
No problematic loops
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