RNA 3D Hub

JAR3D Query RF00210-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF00210 maps to these 3 chains: 2NBX|1|A, 8HUJ|1|C, 8J7R|1|C See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 15 Internal loop

Column numbers: 142-148, 287-293 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    CUAGUAA*UGAAACA   11

    
    UUAGUAA*UGAAACU    9

    
    UUAGUAA*UGAAACC    8

    
    UUAGUAG*UGAAACC    8

    
    UUAGUAG*CGAAAAC    6

    
    UUAGUAA*CGAAACC    5

    
    CUAGUAA*UGAAAAC    3

    
    CUAGUAA*UGAACCA    3

    
    CUAGUAG*CGAAAAC    3

    
    CUAGUAG*UGAAACC    2

    
    UCAGUAA*UGAAACU    2

    
    UUAGUAA*UGAAAAC    2

    
    UUAGUAA*UGAAACA    2

    
    UUAGUAG*CGAACAC    2

    
    UUAGUAG*UGAAAAC    2

    
    UUAGUAG*UGAAACU    2

    
    CGAGUAA*UGAAAAA    1

    
    CUAGAAA*UGGAAAG    1

    
    CUAGUAA*CGAAACA    1

    
    CUAGUAA*UGAAACC    1

    
    CUAGUAA*UGAACAC    1

    
    CUAGUAA*UGGAAAC    1

    
    GUGUGAA*UAACACU    1

    
    UCAGUAA*UGAAAAC    1

    
    UGAGUAG*UGAAAAC    1

    
    UUAGUAA*CGAAAAC    1

    
    UUAGUAA*CGAAACU    1

    
    UUAGUAA*CGAAAGC    1

    
    UUAGUAA*UGAAACG    1

    
    UUAGUAA*UGAAAGC    1

    
    UUAGUAA*UGAAAUC    1

    
    UUAGUAG*CGAAAGC    1

    
    UUAGUAG*CGAACGC    1

    
    UUAGUAG*CGGAAAC    1

    
    UUAGUAG*GGAAACC    1

    
    UUAGUAG*UGAAAGC    1

    
    UUGGAAA*UGGAAGA    1

    
    ACAUGAA*U-AGUAU    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

96.74 25.54 3 1

7x6 Sarcin-Ricin; G-bulge

2

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

71.74 3.50 6 4

7x7 Sarcin-Ricin with intercalated A; G-bulge

3

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

27.17 -15.32 5 2

Sarcin-Ricin target in LSU H95; G-bulge

4

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

19.57 -6.20 5 2

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

5

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

3.26 -21.36 7 3

8x6 Sarcin-Ricin with inserted A; G-bulge

6

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

1.09 -24.55 7 5

7

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

1.09 -33.69 8 5

8

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

1.09 -50.05 8 5

9

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

1.09 -63.62 7 5

10

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

1.09 -69.39 7 5

Triple sheared with non-canonical cWW

11

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

1.09 -75.34 7 6

12

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

1.09 -82.26 7 5

Kink-turn

13

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -21.13 3 1

8x7 Sarcin-Ricin; G-bulge

14

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -29.62 4 2

8x7 Sarcin-Ricin; G-bulge

15

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -30.39 5 3

8x6 Sarcin-Ricin with inserted Y; G-bulge

16

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -40.66 9 6

17

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -44.12 6.5 4

18

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -50.85 7 4

8x6 Sarcin-Ricin with bulged A; G-bulge

19

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -52.47 6 4

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

20

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -55.58 7 4

tSH-tSH-tHH-tHS

21

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -66.89 6 5

Kink-turn related

22

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -67.61 7 5

tSH-tHW-tHH-tHS

23

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -68.89 7 4

24

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -69.10 6 3

UAA/GAN related

25

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -74.41 7 5

Kink-turn with non-sequential stacking

26

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -76.13 8 6

27

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -76.31 7 4

28

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -77.17 6 4

29

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -77.85 8 5

30

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -78.56 7 5

Kink-turn

31

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -79.17 6 4

32

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -81.22 7 5

33

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -81.76 7 4

tSH-tHW-tWH-tHS

34

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -82.91 9 7

35

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -83.27 9 6

36

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -83.48 7 5

37

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -83.96 9 6

38

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -84.29 5 3

tHW-tHW cross-strand stack

39

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -85.25 9 6

40

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -86.26 8 5

41

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -86.31 9 7

Kink-turn related

42

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -87.31 5 4

6x5 Sarcin-Ricin; G-bulge

43

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -88.46 8 6

tWH-tWH-tHW-tHW

44

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -90.45 9 7

45

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -90.92 8 6

46

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -91.34 8 4

47

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -92.20 9 7

48

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -95.65 7 5

Kink-turn related

49

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -97.23 9 7

50

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -97.33 8.5 6

51

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -98.28 8 6

10x8 Sarcin-Ricin; G-bulge

52

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -99.17 7 5

53

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -99.19 8 5

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

54

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -101.40 6 4

tSH-tHW

55

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -101.59 8 5

56

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -102.16 10 7

57

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -102.53 8 6

58

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -105.83 6 4

UAA/GAN with extra stack

59

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -106.90 9 6

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

60

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -108.18 8 5

Double sheared; A in syn; two near cWW pairs

61

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -108.38 9 6

62

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -109.03 10 7

63

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -110.26 10 7

Kink-turn

64

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -111.36 8 7

65

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -111.69 9 6

Bacterial 5S Loop E

66

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -112.98 8 5

67

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -113.23 9 7

68

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -113.45 7 4

tSH-tHH-tHS

69

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -114.34 10 8

70

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -115.23 7 5

Other IL

71

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -115.91 7 6

72

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -117.16 10 7

Other IL

73

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -119.53 9 7

74

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -119.62 7 6

75

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -120.39 6 4

Quadruple sheared

76

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -120.79 10 9

77

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -121.70 12 9

78

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -122.20 8 5

tSH-tHS-tHW

79

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -122.47 7 4

UAA/GAN with tHH

80

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -122.96 8 6

Kink-turn

81

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -123.00 6 4

UAA/GAN with extra cWW

82

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -123.32 8 6

tSH-tWH-tHS-cWW

83

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -123.57 7 4

84

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -123.66 8 6

85

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -124.07 8 5

Kink-turn

86

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -124.77 11 9

87

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -125.00 12 8

Pseudoknot

88

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -125.14 9 7

89

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -126.26 8 6

90

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -128.29 10 8

91

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -130.34 9 7

92

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -130.81 5 5

93

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -131.35 9 7

94

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -132.70 8.5 6

95

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -134.26 10 9

96

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -134.28 6 5

97

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -134.63 7 5

Kink-turn

98

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -135.52 9 5

Triple sheared related

99

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -135.98 6 4

100

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -137.82 7 5

Kink-turn

101

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -137.84 9 5

102

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -138.73 7 4

103

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -138.90 11 8

104

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -139.81 8 6

105

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -140.16 11 8

106

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -141.11 8 5

107

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -144.89 8 4

108

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -145.86 14 11

109

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -146.40 12 10

110

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -147.26 7 5

Kink-turn

111

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -147.48 10 7

Kink-turn with embedded cWW pair

112

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -148.50 8 6

Reverse kink-turn

113

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -149.51 9 6

Kink-turn

114

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -150.96 10 8

115

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -152.71 5 4

116

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -152.93 8 6

117

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -153.60 10 8

118

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -153.76 11 9

119

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -154.56 11 8

Reverse turn

120

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -156.39 11 8

121

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -157.05 10 8

122

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -158.73 9 6

123

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -159.22 11 9

124

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -160.21 10 7

125

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -161.36 8 5

126

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -163.95 10 8

127

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -166.56 10 8

128

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -166.75 13 10

129

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -167.02 10 8

130

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -169.55 10 8

131

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -169.85 10 7

Part of G-quadruplex

132

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -170.87 10 7

133

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -170.89 10 9

134

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -171.68 11 9

135

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -173.04 11 9

136

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -174.26 10 8

137

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -176.20 10 7

138

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -182.21 10 7

Kink-turn

139

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -183.83 11 8

140

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -184.39 9 6

141

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -184.98 11 8

142

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -185.63 9 7

143

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -186.83 8 6

144

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -186.97 10 7

Minor groove platform related

145

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -188.27 8 6

146

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -191.74 10 7

147

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -192.24 11 10

148

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -194.45 12 9

149

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -194.87 10 7

Kink-turn related

150

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -195.08 9 6

Kink-turn from U4

151

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -195.26 8 6

152

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -197.99 8 5

153

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -198.45 8 6

154

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -202.32 9 7

155

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -202.53 9 7

156

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -205.19 9 5

157

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -205.24 8 5

180 degree turn

158

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -206.26 8 7

159

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -208.00 8 6

Kink-turn

160

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -209.85 13 11

161

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -210.16 10 8

162

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -210.43 8 6

163

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -210.72 10 8

164

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -211.73 6 3

UAA/GAN

165

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -212.86 8 7

166

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -213.37 9 7

167

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -213.44 10 7

168

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -213.51 9 6

169

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -214.69 7 4

170

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -214.91 8 5

Triple sheared

171

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -217.78 10 7

172

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -218.53 8 6

173

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -220.93 8 6

174

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -223.10 9 8

Vitamin B12 Aptamer

175

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -226.25 7 6

cWH basepair and non-canonical AC

176

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -229.90 10 8

177

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -231.31 10 8

178

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -231.46 8 7

Pseudoknot

179

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -231.59 8 7

cWH basepair with bulged bases

180

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -232.03 14 12

Kink-turn related

181

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -232.06 9 8

182

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -235.30 11 9

183

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -235.32 10 7

184

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -241.08 11 9

185

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -242.17 8 5

186

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -243.93 15 12

187

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -244.54 7 4

UAA/GAN

188

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -245.23 15 13

Kink-turn

189

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -248.86 7 5

AAA cross-strand stack

190

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -249.06 7 5

191

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -251.70 12 10

192

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -251.81 12 9

Reverse kink-turn related

193

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -253.83 9 8

194

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -255.36 15 14

195

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -259.59 10 9

196

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -260.95 12 9

197

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -263.46 10 8

198

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -264.16 9 6

tSH-tHW

199

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -266.76 6 4

5x5 Sarcin-Ricin with intercalated A; G-bulge

200

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -267.84 10 8

201

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -268.92 10 9

202

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -272.30 9 6

Receptor of 11-nt loop-receptor motif

203

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -274.17 6 4

tSH-tWH-tHS

204

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -274.22 13 10

205

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -276.30 10 7

206

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -276.41 9 6

207

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -277.46 8 5

208

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -281.61 9.5 6

Decoding loop related

209

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -282.72 9 7

Intercalated tWH

210

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -287.17 7 7

211

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -288.99 9 6

212

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -289.99 9 6

Receptor of 11-nt loop-receptor motif

213

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -290.87 11 8

214

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -293.18 15 12

215

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -295.70 8 7

216

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -295.88 10 8

217

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -296.34 10 8

218

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -301.78 7 6

219

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -301.80 13 11

Pseudoknot

220

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -302.53 7 5

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

221

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -306.31 7 5

Double sheared

222

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -311.53 8 6

223

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -315.28 9 7

224

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -315.41 8 5

Triple non-canonical cWW pairs

225

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -315.47 9.5 7

226

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -317.20 8 6

Double sheared with non-canonical cWW

227

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -320.79 13 11

228

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -326.53 19 16

229

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -326.92 9 8

230

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -327.77 9 6

231

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -330.17 18 15

232

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -331.76 9 6

233

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -335.26 6 5

Triple sheared

234

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -335.51 8 6

235

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -340.66 9 7

236

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -343.77 8 5

237

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -344.14 8 7

238

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -356.99 17 15

239

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -369.29 10 8

240

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -372.20 6 6

241

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -373.20 8 5

242

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -373.42 7 5

tSH-tHW

243

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -374.28 10 6

244

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -374.74 8 6

Isolated non-canonical cWW pair

245

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -375.66 9 7

Symmetric double minor groove platform

246

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -378.83 15 13

247

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -379.62 18 17

248

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -382.10 20 18

249

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -387.84 9 6

Tandem non-canonical cWW pairs

250

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -389.22 9 6

251

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -391.52 19 17

252

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -392.17 7 5

UAA/GAN variation

253

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -392.71 9 7

254

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -398.29 9 7

255

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -402.90 12 10

256

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -407.51 9 8

257

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -409.42 9 7

258

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -416.73 10 7

259

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -421.19 9 8

260

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -432.79 9 8

261

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -433.69 7 4

Double sheared

262

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -446.12 9 7

263

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -453.31 7 5

UAA/GAN related

264

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -459.99 9 6

265

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -465.86 18 16

266

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -471.93 9 7

267

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -473.25 9 8

268

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -475.06 11 8

Other IL

269

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -476.92 8 6

Tandem non-canonical cWW pairs

270

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -478.41 10 8

271

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -479.72 8 6

272

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -486.09 19 18

273

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -489.82 7 6

274

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -495.68 12 10

275

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -505.29 8 6

276

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -508.16 8 6

277

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -510.49 8 7

278

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -518.25 9 8

279

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -519.74 7 6

Minor groove platform

280

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -522.99 8 6

281

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -527.15 9 7

Isolated non-canonical cWW pair

282

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -527.58 15 13

283

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -528.25 8 7

284

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -528.35 9 7

Major groove minor groove platform with intercalation; mini C-loop

285

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -532.20 9 7

286

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -536.36 9 7

287

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -541.40 15 13

288

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -542.53 12 9

289

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -549.22 11 8

290

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -552.93 15 12

Kink-turn related

291

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -560.92 17 14

292

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -566.48 9 7

293

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -569.68 8 6

294

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -573.30 8 7

295

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -578.71 9 7

Tandem non-canonical cWW pairs

296

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -599.59 9 7

297

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -607.71 9 7

298

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -611.04 10 7

Reverse kink-turn related

299

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -612.48 9 7

Isolated non-canonical cWW pair

300

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -613.49 9 7

301

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -621.25 10 8

302

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -622.77 9 7

303

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -627.15 14 13

304

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -627.59 13 10

305

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -638.59 9 7

Stack and bulge

306

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -645.70 15 12

307

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -658.10 9 8

Multiple bulged bases

308

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -669.40 8 7

Isolated non-canonical cWW pair

309

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -688.36 9 7

Decoding loop related

310

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -688.72 10 8

311

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -696.46 8 7

Isolated non-canonical cWW contact

312

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -702.02 9 7

Isolated tWW turn

313

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -713.43 9 7

Isolated cWS basepair

314

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -716.31 9 8

Isolated tHS basepair with bulges

315

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -720.02 8 7

Isolated cWH basepair

316

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -753.03 8 7

Isolated non-canonical cWW pair

317

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -756.21 10 9

318

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -853.95 9 8

Isolated non-canonical cWW pair

319

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4504.86 16 14

320

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4716.40 13 11

321

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -5176.48 14 12

322

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -5185.77 12 10

323

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -5189.99 12 10

324

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -5228.35 12 9

325

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -5232.33 13 11

326

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -5252.34 13 13

Pseudoknot

327

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5303.74 13 11

328

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5330.76 10 8

329

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5333.17 10 8

330

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -5365.24 14 13

Part of G-quadruplex

331

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -5381.52 11 10

332

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -5419.20 10 7

Kink-turn related

333

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -5547.15 10 8

334

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -5741.28 11 10

335

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -5765.64 9 8

336

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -5775.76 10 8

337

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -5860.63 12 10

338

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -5967.67 11 9

339

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -6003.06 11 9

340

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -6160.96 11 9

341

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -6222.63 12 11

342

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -6253.92 12 9

343

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -6390.17 9 7

344

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -6430.45 11 9

Minor groove platform

345

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -6511.66 9 6

346

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -6644.42 8 5

Kink-turn

347

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -6721.23 12 10

Major groove intercalation

348

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -6803.25 9 6

C-loop with bulged stacked A's

349

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -7087.06 11 10

350

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -7168.55 9 8

351

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -7188.73 10 8

8-nt loop receptor

352

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -7224.73 9 8

353

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -7228.91 10 7

354

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -7373.17 10 8

355

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -7450.14 10 9

SSU/LSU pseudoknot

356

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -7489.35 8 7

357

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -7558.60 10 8

358

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -7701.23 10 9

359

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -7725.51 10 9

Major groove intercalation

360

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -8020.61 10 9

361

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -8159.19 9 7

362

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -8259.47 9 7

363

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -8372.62 9 9

Major groove platform

364

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8607.78 8 7

C-loop

365

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -8744.13 9 7

Multiple bulged bases

366

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -9180.59 9 7

367

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -9506.74 10 7

368

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -9545.29 10 7

369

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -9695.43 11 7

Multiple bulged bases

370

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -9775.59 11 10

Bulged stacked bases

371

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 9

Single bulged G

372

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 9 8

373

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 8

Major groove platform with intercalation

374

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 9 7

C-loop

375

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 9

376

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -9999.00 9 8

Major groove platform with intercalated tWH

377

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 9 8

Minor groove platform

378

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 9

379

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 11 8

380

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 9 8

381

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 9 6

382

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 9

Single stack bend

383

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 10 8

Left turn

384

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 9

Single bulged A

385

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 8

386

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -9999.00 9 8

387

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9999.00 9 9

Multiple bulged bases

388

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 9 8

389

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -9999.00 10 8

Minor groove platform

390

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 9 8

Major groove platform

391

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9999.00 8 8

Major groove platform; stack outside cWW

392

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 9 8

Minor groove platform

393

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 8

394

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 9

395

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 9

Single bulged C

396

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 12 9

397

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -9999.00 8 8

Major groove intercalation

398

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 9 8

Major groove minor groove platform; mini C-loop

399

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 10 8

400

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 8

401

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 10 8

402

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 10 8

403

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 8

Intercalated cWS

404

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -9999.00 8 7

Multiple bulged bases

405

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 11 9

406

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 9 6

407

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -9999.00 9 7

408

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 9

Single bulged U

409

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 8

Single stack bend

410

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 10 8

411

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 8

Minor groove platform, major groove intercalation

Coloring options: