RNA 3D Hub

JAR3D Query RF00210-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF00210 maps to these 3 chains: 2NBX|1|A, 8HUJ|1|C, 8J7R|1|C See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 24 Internal loop

Column numbers: 397-406, 509-516 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    GGC--UAAGG*CUAU-GCC   71

    
    GGC--UAAGG*CUAC-GCC   12

    
    GGC--UAAGG*CUAU-GUC    4

    
    CCCACGAAGG*CUAGUGGG    1

    
    GAC--UAAGG*CUAU-GUC    1

    
    GGA--UAAGG*CUAU-GCC    1

    
    GGC--UCCGG*CUAC-GCC    1

    
    CGC--GAAGG*CUA--GCG    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -55.29 7 6

2

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -56.98 7 5

3

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -61.59 7 5

4

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -61.82 7 4

5

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -64.42 9 7

6

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -69.46 9 5

7

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -72.56 9 5

8

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -74.92 9 5

9

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -77.89 7 5

10

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -78.18 10 8

11

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -80.52 7 5

12

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -83.15 8 7

13

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -87.85 8 6

Minor groove platform related

14

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -88.61 7 7

15

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -89.01 8 7

16

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -89.22 8 6

tWH-tWH-tHW-tHW

17

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -90.70 10 8

18

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -93.49 9 7

Kink-turn

19

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -95.40 9 7

20

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -96.37 8 7

21

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -98.07 8 6

22

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -99.85 10 8

23

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -100.45 11 7

24

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -100.76 11 8

25

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -100.91 10 8

26

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -101.61 11 7

27

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -102.87 9 7

28

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -104.06 9 8

29

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -104.26 12 8

Kink-turn

30

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -108.02 13 9

Pseudoknot

31

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -108.74 8 6

32

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -108.78 7 5

Kink-turn with embedded cWW pair

33

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -109.40 9 7

34

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -109.58 6 6

8x6 Sarcin-Ricin with inserted A; G-bulge

35

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -109.88 9 5

36

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -110.81 7 5

Kink-turn related

37

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -111.14 10 6

Reverse turn

38

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -111.31 10 8

39

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -111.51 9 7

40

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -112.65 11 8

41

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -112.68 7 7

42

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -112.72 12 9

43

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -112.83 7 5

44

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -113.09 10 8

Kink-turn related

45

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -113.39 10 7

46

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -114.46 10 8

47

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -114.47 8 6

48

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -114.51 9 7

8x7 Sarcin-Ricin; G-bulge

49

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -115.68 12 11

50

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -119.51 9 7

Kink-turn with non-sequential stacking

51

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -120.37 8 8

52

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -120.84 8 8

tSH-tHW-tHH-tHS

53

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -120.96 8 6

tHW-tHW cross-strand stack

54

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -121.18 9 5

tSH-tSH-tHH-tHS

55

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -121.90 7 7

Kink-turn

56

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -122.06 12 10

57

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -124.73 8 7

58

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -126.23 7 7

7x7 Sarcin-Ricin with intercalated A; G-bulge

59

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -126.78 8 6

60

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -129.51 9 7

61

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -131.58 6 6

tSH-tHS-tHW

62

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -131.81 9 6

63

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -132.90 11 9

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

64

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -133.92 11 7

65

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -134.11 8 7

66

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -134.16 13 9

10x8 Sarcin-Ricin; G-bulge

67

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -134.85 8 6

Double sheared; A in syn; two near cWW pairs

68

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -134.96 8 6

69

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -135.28 10 7

70

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -137.93 11 8

71

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -138.31 13 10

72

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -138.76 11 8

73

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -139.79 9 8

74

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -139.99 7 5

UAA/GAN related

75

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -140.23 11 8

Kink-turn related

76

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -140.67 13 10

77

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -141.64 9 6

Kink-turn

78

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -142.73 8 6

79

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -143.60 10 8

80

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -144.25 8 8

8x6 Sarcin-Ricin with inserted Y; G-bulge

81

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -145.16 7 5

UAA/GAN with tHH

82

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -146.68 8 6

7x6 Sarcin-Ricin; G-bulge

83

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -146.71 8 7

84

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -147.89 9 7

Other IL

85

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -148.78 10 7

86

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -149.31 6 6

87

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -149.86 10 8

88

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -151.49 10 7

89

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -152.19 10 7

90

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -152.52 9 7

91

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -153.47 9 9

92

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -154.10 10 6

Triple sheared related

93

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -154.87 10 7

94

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -155.41 8 8

8x7 Sarcin-Ricin; G-bulge

95

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -155.87 8 8

8x6 Sarcin-Ricin with bulged A; G-bulge

96

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -156.44 10 7

Kink-turn

97

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -156.89 12 10

98

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -158.10 8 8

99

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -159.00 7 7

tSH-tHW

100

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -159.90 9 6

Kink-turn

101

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -160.78 10 9

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

102

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -161.33 9 8

Triple sheared with non-canonical cWW

103

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -161.98 10 8

Kink-turn

104

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -162.49 9 7

tSH-tHW-tWH-tHS

105

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -164.92 6 6

106

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -165.76 9 6

Vitamin B12 Aptamer

107

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -166.03 8 7

108

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -166.22 7 6

tSH-tWH-tHS-cWW

109

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -166.31 7 6

110

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -166.39 9 7

Kink-turn

111

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -166.60 13 9

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

112

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -166.93 8 8

113

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -167.97 7 5

UAA/GAN with extra cWW

114

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -169.07 9 6

cWH basepair with bulged bases

115

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -169.66 11 7

Part of G-quadruplex

116

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -169.84 8 7

117

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -170.15 10 6

6x5 Sarcin-Ricin; G-bulge

118

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -170.16 10 7

119

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -171.81 10 7

UAA/GAN with extra stack

120

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -172.84 12 10

121

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -173.46 9 7

122

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -174.96 6 6

123

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -175.85 8 7

124

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -177.09 14 12

125

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -177.29 12 9

126

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -177.72 12 10

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

127

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -177.86 10 7

Other IL

128

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -178.68 10 6

tSH-tHH-tHS

129

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -179.30 11 8

Kink-turn

130

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -179.75 13 11

131

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -181.09 13 10

132

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -181.76 11 8

Sarcin-Ricin target in LSU H95; G-bulge

133

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -183.67 10 7

134

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -184.10 9 8

135

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -184.53 8 6

Kink-turn

136

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -187.28 7 5

137

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -188.27 8 7

Kink-turn

138

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -192.52 15 11

Kink-turn related

139

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -193.85 12 9

Bacterial 5S Loop E

140

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -194.54 8 7

141

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -195.14 9 8

142

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -195.86 11 11

143

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -196.45 9 8

144

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -197.43 10 9

145

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -200.43 10 7

Reverse kink-turn

146

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -201.32 9 7

147

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -202.60 10 7

148

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -204.49 11 8

149

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -205.11 13 12

150

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -208.93 14 11

151

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -209.08 9 8

Reverse kink-turn related

152

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -209.10 11 8

153

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -209.16 8 6

154

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -209.41 9 7

155

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -211.24 9 8

156

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -211.91 8 6

157

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -213.11 7 5

Intercalated tWH

158

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -214.55 9 6

159

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -214.70 9 8

160

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -215.12 10 7

161

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -216.35 11 8

162

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -219.66 8 7

Kink-turn related

163

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -220.35 17 13

Kink-turn

164

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -221.44 10 8

165

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -226.53 11 8

166

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -226.62 9 6

167

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -227.23 8 6

Kink-turn from U4

168

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -227.97 9 6

169

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -231.92 9 7

170

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -232.34 10 9

171

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -232.70 12 11

172

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -234.71 8 8

173

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -235.40 9 7

Quadruple sheared

174

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -236.23 10 7

175

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -236.53 13 9

176

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -237.40 12 10

177

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -238.90 7 7

178

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -242.18 9 7

179

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -242.79 12 9

180

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -247.54 8 7

Pseudoknot

181

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -251.51 9 7

182

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -254.44 11 8

183

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -259.81 10 8

184

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -260.95 8 8

185

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -261.90 11 11

186

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -262.82 9 7

187

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -262.84 8 6

180 degree turn

188

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -264.00 6 6

189

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -264.45 11 11

190

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -264.61 10 6

cWH basepair and non-canonical AC

191

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -269.71 10 7

192

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -270.51 7 6

tSH-tHW

193

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -271.76 12 8

Reverse kink-turn related

194

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -272.64 9 6

195

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -273.90 9 7

196

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -281.09 7 7

197

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -282.36 12 10

198

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -283.04 14 12

Pseudoknot

199

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -283.91 7 7

200

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -298.55 16 15

201

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -300.15 11 7

202

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -300.96 8 7

203

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -301.10 18 14

204

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -302.22 11 9

205

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -303.14 12 11

206

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -304.18 6 6

Receptor of 11-nt loop-receptor motif

207

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -306.72 9 7

Triple sheared

208

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -313.55 7 6

209

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -315.99 12 8

210

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -321.09 11 8

211

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -323.50 7 6

UAA/GAN

212

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -323.64 12 9

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

213

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -324.08 16 14

214

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -328.08 18 17

215

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -329.11 6 6

Double sheared with non-canonical cWW

216

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -329.98 7 7

217

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -330.08 9 7

218

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -330.25 16 14

219

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -332.07 10 8

220

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -334.87 6 6

Receptor of 11-nt loop-receptor motif

221

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -335.53 9 7

Decoding loop related

222

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -336.44 9 7

AAA cross-strand stack

223

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -336.61 8 6

224

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -337.11 14 14

Kink-turn related

225

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -338.49 10 8

226

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -338.66 9 7

227

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -343.13 8 6

UAA/GAN

228

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -346.77 10 8

229

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -350.37 7 7

230

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -358.24 8 7

231

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -358.74 18 16

232

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -368.81 8 7

233

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -371.94 9 7

234

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -373.71 9 7

235

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -377.93 9 6

Kink-turn

236

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -380.03 6 6

237

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -381.75 8 7

Triple non-canonical cWW pairs

238

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -382.57 9 7

239

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -383.85 19 17

240

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -387.25 7 6

tSH-tWH-tHS

241

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -391.81 10 8

242

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -392.86 9 8

243

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -396.60 11 9

244

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -398.19 15 14

245

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -415.11 9 7

246

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -419.26 9 7

247

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -420.36 8 6

Tandem non-canonical cWW pairs

248

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -425.06 9 7

249

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -426.50 10 7

Isolated non-canonical cWW pair

250

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -428.62 7 6

251

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -437.25 18 17

252

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -438.15 9 7

5x5 Sarcin-Ricin with intercalated A; G-bulge

253

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -443.82 10 8

Double sheared

254

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -443.84 9 8

255

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -443.92 9 7

256

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -450.22 17 14

257

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -452.11 11 11

258

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -454.87 9 8

259

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -456.65 10 8

260

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -457.85 9 8

261

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -458.10 7 7

Triple sheared

262

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -459.77 8 7

263

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -461.69 7 7

tSH-tHW

264

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -476.30 10 8

265

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -477.34 6 6

266

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -488.32 11 7

Symmetric double minor groove platform

267

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -490.86 9 8

268

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -493.90 7 6

269

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -507.92 12 8

270

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -514.07 19 18

271

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -522.03 10 9

Other IL

272

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -522.54 8 7

UAA/GAN variation

273

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -526.08 6 6

274

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -533.61 7 7

275

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -547.85 8 6

UAA/GAN related

276

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -557.01 7 7

Tandem non-canonical cWW pairs

277

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -564.16 9 8

278

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -564.82 9 7

279

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -573.01 12 12

280

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -575.42 9 7

281

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -576.11 8 7

282

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -577.92 7 7

283

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -580.95 7 7

284

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -584.80 8 7

Isolated non-canonical cWW pair

285

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -585.08 8 7

286

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -587.90 8 7

Double sheared

287

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -588.01 8 7

288

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -593.10 8 7

Tandem non-canonical cWW pairs

289

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -632.61 10 8

290

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -641.19 9 8

291

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -649.89 11 11

292

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -655.72 8 7

293

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -660.49 8 8

294

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -667.98 8 7

295

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -682.33 9 8

296

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -689.41 9 7

297

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -690.34 8 8

298

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -700.24 9 7

Major groove minor groove platform with intercalation; mini C-loop

299

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -709.41 9 8

Isolated non-canonical cWW pair

300

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -716.64 8 8

301

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -732.52 9 8

Minor groove platform

302

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -735.34 11 10

303

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -762.46 9 9

304

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -797.67 9 8

305

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -806.21 8 8

Decoding loop related

306

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -808.01 8 8

Isolated non-canonical cWW pair

307

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -865.97 8 8

Isolated non-canonical cWW pair

308

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -873.47 8 8

Stack and bulge

309

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -897.46 8 8

Isolated tWW turn

310

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -898.28 8 8

Isolated non-canonical cWW contact

311

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -910.54 9 8

Isolated cWS basepair

312

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -911.89 9 9

Multiple bulged bases

313

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -915.63 9 8

Isolated tHS basepair with bulges

314

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -926.85 9 8

Isolated cWH basepair

315

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -976.63 11 9

316

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -1013.83 9 9

Isolated non-canonical cWW pair

317

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -4330.58 11 9

318

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -4341.52 17 13

319

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4492.52 15 13

320

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4735.70 13 13

321

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -5087.85 9 7

322

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -5119.34 10 10

323

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -5152.80 12 11

324

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -5163.87 11 10

325

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -5186.73 11 11

326

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -5191.52 12 11

Part of G-quadruplex

327

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -5210.14 13 12

Pseudoknot

328

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5294.73 13 11

329

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5342.56 12 9

330

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -5347.80 12 10

331

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5359.59 13 10

332

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -5411.58 9 8

Kink-turn related

333

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -5549.13 11 10

334

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -5722.55 7 6

335

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -5740.59 13 11

336

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -5790.76 10 10

337

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -5843.46 12 11

338

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -5972.31 10 10

339

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -5986.86 11 10

340

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -6128.95 9 9

341

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -6162.03 13 10

342

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -6174.90 9 8

343

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -6368.33 10 9

Minor groove platform

344

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -6419.78 10 9

345

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -6526.42 10 9

346

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -6674.71 10 9

Major groove intercalation

347

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -6834.89 9 7

C-loop with bulged stacked A's

348

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -7033.75 11 9

349

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -7166.42 10 8

8-nt loop receptor

350

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -7172.27 8 7

351

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -7183.11 11 9

352

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -7193.48 8 7

353

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -7364.19 9 7

SSU/LSU pseudoknot

354

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -7389.95 10 9

355

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -7405.76 8 6

356

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -7559.32 10 8

357

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -7686.33 10 9

358

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -7740.03 11 10

Major groove intercalation

359

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -8026.04 11 9

360

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -8151.42 9 7

361

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -8246.01 8 7

362

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -8262.21 10 8

363

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -8407.19 10 10

Major groove platform

364

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8733.35 9 8

C-loop

365

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -8776.21 10 9

Multiple bulged bases

366

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -9186.64 7 7

367

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -9517.85 10 8

368

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -9550.90 9 8

369

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -9715.81 12 8

Multiple bulged bases

370

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -9735.89 11 10

Bulged stacked bases

371

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 10

Single bulged G

372

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 10 10

373

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 9

Major groove platform with intercalation

374

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 9 9

C-loop

375

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 10

376

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -9999.00 10 8

Major groove platform with intercalated tWH

377

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 9 9

Minor groove platform

378

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 10

379

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 10 9

380

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 10 9

381

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 10 7

382

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 10

Single stack bend

383

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 9 9

Left turn

384

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 10

Single bulged A

385

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 10

386

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -9999.00 9 8

387

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9999.00 10 9

Multiple bulged bases

388

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 10 9

389

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -9999.00 10 9

Minor groove platform

390

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 10 9

Major groove platform

391

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9999.00 9 9

Major groove platform; stack outside cWW

392

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 9 9

Minor groove platform

393

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 9

394

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 10

395

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 10

Single bulged C

396

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 10

397

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 9

Major groove intercalation

398

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 10 9

Major groove minor groove platform; mini C-loop

399

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 10 10

400

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 9

401

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 9 9

402

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 10 9

403

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 10

Intercalated cWS

404

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -9999.00 9 8

Multiple bulged bases

405

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 8 8

406

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 11 8

407

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -9999.00 10 8

408

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 10

Single bulged U

409

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 9

Single stack bend

410

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 11 10

411

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 9

Minor groove platform, major groove intercalation

Coloring options: