RNA 3D Hub

JAR3D Query RF00210-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF00210 maps to these 3 chains: 2NBX|1|A, 8HUJ|1|C, 8J7R|1|C See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 4 Internal loop

Column numbers: 48-49, 66-76 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    CG*UCUAGA----G   76

    
    CG*UCUUGA----G    7

    
    CA*UCUAGA----G    2

    
    UU*UGUGGACCUUA    1

    
    CA*UCUUGA----G    1

    
    CC*UGCCGU----G    1

    
    CG*UCUAGU----G    1

    
    CG*UCUGGA----G    1

    
    CG*CCCACA-----    1

    
    Omitted sequenced and counts

    
    --*UCUUGC----C    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

85.71 -7.16 3 2

2

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

8.79 -25.02 4 4

3

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

1.10 -41.52 5 4

Major groove intercalation

4

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

1.10 -93.60 5 3

5

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -23.83 4 3

6

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -35.08 6 3

7

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -38.54 5 3

8

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -42.40 4 2

9

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -47.97 7 4

10

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -48.67 6 4

Minor groove platform

11

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -54.73 8 6

12

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -54.85 6 4

13

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -59.76 4 3

SSU/LSU pseudoknot

14

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -60.18 6 3

15

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -60.43 5 4

16

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -61.66 7 4

17

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -62.36 9 5

18

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -64.72 6 4

Vitamin B12 Aptamer

19

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -67.35 8 4

Major groove intercalation

20

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -67.91 8 4

21

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -68.96 7 5

22

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -69.53 6 6

23

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -70.11 5 3

24

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -74.30 8 4

25

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -78.71 4 3

Intercalated tWH

26

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -81.82 5 4

27

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -83.58 5 4

28

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -84.66 6 6

29

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -85.14 4 2

Multiple bulged bases

30

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -85.39 8 5

31

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -85.98 7 6

32

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -86.28 6 6

33

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -86.77 5 4

34

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -88.04 7 5

cWH basepair with bulged bases

35

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -88.60 8 5

Kink-turn related

36

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -88.88 7 5

37

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -89.39 7 5

38

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -91.40 9 5

39

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -93.70 6 4

40

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -94.47 7 6

Reverse kink-turn related

41

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -95.98 5 3

Major groove minor groove platform with intercalation; mini C-loop

42

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -96.82 6 4

Pseudoknot

43

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -99.82 7 6

44

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -100.30 9 7

45

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -102.18 6 5

46

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -103.58 9 5

47

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -105.33 10 7

48

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -105.43 10 7

49

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -112.30 5 4

50

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -113.10 4 4

51

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -113.61 6 3

52

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -114.30 8 6

53

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -115.82 8 4

54

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -117.50 6 5

55

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -119.06 8 6

56

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -119.23 9 6

57

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -124.31 7 6

58

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -128.00 9 6

Reverse turn

59

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -131.08 7 6

60

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -131.98 7 6

61

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -132.66 6 6

62

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -134.44 9 7

63

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -138.13 4 3

64

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -139.74 6 3

Bulged stacked bases

65

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -141.16 5 5

66

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -142.48 8 6

67

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -142.50 6 4

68

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -144.96 7 4

69

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -145.07 9 6

70

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -147.35 6 5

71

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -147.92 8 7

72

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -148.25 7 6

73

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -148.89 7 5

74

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -149.78 7 3

75

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -150.48 7 5

180 degree turn

76

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -151.40 7 7

77

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -154.93 10 8

78

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -160.01 7 5

79

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -160.75 4 3

Left turn

80

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -161.08 8 7

81

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -162.36 8 7

Pseudoknot

82

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -165.69 6 3

83

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -166.17 10 7

84

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -166.52 8 5

85

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -167.02 7 4

86

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -168.00 9 7

87

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -168.13 9 5

88

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -170.76 7 6

89

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -171.38 7 6

90

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -171.67 6 4

91

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -173.22 8 4

92

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -173.39 4 3

93

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -174.84 7 6

94

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -175.14 2 2

95

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -177.93 7 7

96

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -179.33 8 7

97

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -181.33 7 5

98

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -182.18 4 3

99

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -182.45 7 4

Isolated non-canonical cWW pair

100

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -185.63 11 9

101

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -186.45 9 7

102

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -188.17 8 5

Reverse kink-turn

103

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -188.52 7 6

Kink-turn

104

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -188.62 8 6

105

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -188.80 9 6

tSH-tHW

106

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -189.71 10 10

107

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -191.95 7 3

108

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -192.17 3 3

Major groove intercalation

109

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -192.45 9 6

110

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -194.33 5 4

111

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -195.61 7 5

112

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -195.93 11 9

113

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -197.32 6 5

114

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -197.74 5 4

115

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -197.84 11 9

116

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -198.79 8 8

117

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -200.78 8 6

118

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -202.88 9 8

119

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -203.17 9 9

120

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -203.40 6 5

121

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -206.86 5 3

122

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -207.67 5 5

123

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -208.71 10 10

124

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -209.65 6 4

125

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -210.88 9 6

126

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -211.70 5 3

127

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -213.11 8 7

tSH-tHS-tHW

128

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -213.45 7 5

Kink-turn related

129

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -216.58 6 4

130

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -216.93 10 9

131

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -219.12 7 6

UAA/GAN related

132

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -220.22 6 4

133

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -222.16 9 6

8x6 Sarcin-Ricin with inserted A; G-bulge

134

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -222.62 8 7

135

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -223.31 11 8

136

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -223.71 9 8

137

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -224.43 7 7

138

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -225.07 13 12

139

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -226.54 5 5

140

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -228.04 7 6

tHW-tHW cross-strand stack

141

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -228.47 5 3

142

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -230.06 6 5

143

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -231.71 7 6

Kink-turn

144

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -232.00 9 7

Reverse kink-turn related

145

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -234.00 11 10

146

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -234.51 7 6

Sarcin-Ricin target in LSU H95; G-bulge

147

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -234.71 15 12

Kink-turn related

148

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -236.45 11 11

149

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -239.75 5 3

150

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -240.11 9 8

151

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -240.13 5 3

152

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -245.85 7 6

Kink-turn with embedded cWW pair

153

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -249.24 14 12

154

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -250.54 14 14

155

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -251.72 11 8

Minor groove platform related

156

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -253.70 4 3

Major groove platform with intercalated tWH

157

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -253.99 10 7

158

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -254.76 9 8

159

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -259.78 9 6

160

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -260.85 8 4

161

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -262.19 12 11

162

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -262.65 5 5

Kink-turn from U4

163

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -263.26 8 8

164

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -263.70 11 7

165

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -268.42 6 5

166

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -269.67 13 11

167

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -270.06 8 4

168

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -270.38 4 4

tSH-tHW

169

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -270.49 6 5

Decoding loop related

170

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -270.58 5 5

171

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -270.73 16 13

Pseudoknot

172

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -273.43 7 4

Multiple bulged bases

173

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -274.63 7 5

174

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -275.58 8 7

175

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -278.25 14 11

176

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -279.15 8 6

177

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -280.91 5 3

178

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -281.72 10 10

179

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -282.33 3 3

180

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -284.26 5 2

Minor groove platform

181

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -284.41 10 9

182

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -284.76 8 7

183

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -285.02 4 2

Minor groove platform, major groove intercalation

184

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -286.92 4 2

185

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -287.99 7 6

186

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -288.95 17 14

Kink-turn

187

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -292.88 7 4

188

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -293.50 10 9

189

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -293.77 11 10

190

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -295.61 14 13

191

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -297.39 5 5

192

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -298.51 6 6

193

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -299.57 5 5

AAA cross-strand stack

194

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -299.74 7 6

Kink-turn

195

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -302.90 4 3

Intercalated cWS

196

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -303.13 8 8

197

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -304.63 14 13

198

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -306.37 6 5

199

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -306.89 14 11

Pseudoknot

200

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -306.93 4 4

201

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -307.10 5 4

202

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -307.34 12 9

203

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -308.27 7 6

UAA/GAN with extra stack

204

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -309.87 9 5

205

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -310.05 10 7

Kink-turn

206

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -314.02 5 3

207

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -315.01 12 11

208

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -316.22 10 8

209

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -318.22 10 7

210

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -318.33 8 6

211

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -319.99 6 5

212

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -320.85 3 3

Multiple bulged bases

213

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -322.76 3 3

Major groove minor groove platform; mini C-loop

214

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -323.26 9 8

215

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -324.36 9 7

216

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -325.32 5 5

217

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -325.33 7 5

218

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -325.68 9 7

219

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -327.22 4 4

Major groove platform

220

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -327.23 8 6

221

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -327.55 16 14

222

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -328.14 5 4

Decoding loop related

223

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -329.85 14 14

224

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -329.97 12 11

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

225

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -331.62 6 4

226

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -331.70 4 4

227

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -332.96 10 9

10x8 Sarcin-Ricin; G-bulge

228

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -335.02 11 10

229

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -335.52 8 7

Part of G-quadruplex

230

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -335.54 7 4

231

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -335.59 6 6

232

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -335.66 11 9

233

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -336.13 4 4

234

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -336.56 5 4

Receptor of 11-nt loop-receptor motif

235

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -337.02 11 9

236

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -339.75 4 3

237

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -339.77 5 4

238

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -341.07 15 15

239

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -341.13 8 8

Kink-turn related

240

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -342.70 7 3

Minor groove platform

241

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -344.95 7 6

242

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -348.79 5 3

243

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -349.95 8 5

Triple sheared related

244

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -351.50 14 11

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

245

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -353.55 7 6

Kink-turn related

246

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -362.00 3 3

Multiple bulged bases

247

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -362.88 6 5

248

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -364.48 8 6

Other IL

249

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -364.66 9 6

tWH-tWH-tHW-tHW

250

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -368.33 8 5

251

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -368.62 4 3

Major groove platform

252

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -368.75 5 4

253

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -369.13 7 6

6x5 Sarcin-Ricin; G-bulge

254

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -369.18 10 8

8x6 Sarcin-Ricin with inserted Y; G-bulge

255

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -369.82 17 15

256

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -372.90 5 4

257

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -374.23 3 3

Major groove platform with intercalation

258

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -374.78 8 5

259

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -375.97 9 5

260

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -376.03 14 14

261

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -377.51 5 4

262

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -381.06 9 6

263

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -383.16 8 7

8x6 Sarcin-Ricin with bulged A; G-bulge

264

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -386.65 10 8

7x7 Sarcin-Ricin with intercalated A; G-bulge

265

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -389.71 6 4

Stack and bulge

266

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -391.55 6 5

tSH-tHH-tHS

267

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -392.16 4 4

268

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -392.84 11 9

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

269

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -393.91 8 7

270

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -396.09 8 6

271

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -396.60 9 6

UAA/GAN with tHH

272

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -396.82 18 17

273

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -405.80 7 4

274

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -406.06 5 5

Kink-turn

275

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -407.18 8 7

276

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -407.63 8 8

277

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -407.82 10 9

tSH-tHW-tHH-tHS

278

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -408.53 4 4

279

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -408.82 6 4

280

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -409.84 12 10

281

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -412.12 12 11

282

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -413.75 8 6

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

283

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -413.97 8 6

284

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -414.74 4 4

Minor groove platform

285

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -415.38 8 7

Double sheared; A in syn; two near cWW pairs

286

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -416.00 5 4

287

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -416.71 12 10

288

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -418.27 6 3

289

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -418.43 5 4

290

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -422.89 6 5

291

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -425.08 10 7

292

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -426.23 11 8

Kink-turn

293

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -428.86 5 5

294

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -429.70 8 7

tSH-tSH-tHH-tHS

295

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -436.13 4 4

Single stack bend

296

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -436.26 20 18

297

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -437.03 19 18

298

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -439.76 9 8

Triple sheared with non-canonical cWW

299

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -440.09 6 4

300

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -442.40 5 5

UAA/GAN

301

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -443.31 20 17

302

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -444.95 8 7

8x7 Sarcin-Ricin; G-bulge

303

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -450.19 8 7

8x7 Sarcin-Ricin; G-bulge

304

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -450.98 11 11

305

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -451.58 7 4

Isolated non-canonical cWW pair

306

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -452.41 18 16

307

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -458.30 13 12

308

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -459.19 5 4

Isolated non-canonical cWW contact

309

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -460.11 14 13

310

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -460.74 4 4

Single bulged A

311

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -460.91 13 11

312

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -462.33 7 6

7x6 Sarcin-Ricin; G-bulge

313

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -464.49 4 4

Single stack bend

314

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -472.59 8 5

Minor groove platform

315

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -473.96 5 3

Major groove platform; stack outside cWW

316

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -480.48 5 3

Isolated non-canonical cWW pair

317

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -481.06 20 20

318

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -481.64 10 7

319

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -481.88 7 6

cWH basepair and non-canonical AC

320

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -483.83 13 13

321

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -484.73 9 8

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

322

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -486.19 4 4

323

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -486.55 6 5

Double sheared

324

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -488.54 6 4

325

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -490.73 8 8

Kink-turn

326

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -490.87 9 7

UAA/GAN with extra cWW

327

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -494.31 4 4

Single bulged G

328

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -496.41 9 6

Kink-turn

329

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -496.47 7 6

330

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -500.33 7 7

Receptor of 11-nt loop-receptor motif

331

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -501.90 6 4

332

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -503.85 6 5

Tandem non-canonical cWW pairs

333

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -505.01 7 5

Kink-turn

334

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -505.76 11 9

335

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -506.24 5 5

336

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -507.96 5 4

Single bulged C

337

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -508.34 9 8

338

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -510.20 4 4

Single bulged U

339

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -511.25 9 8

Kink-turn

340

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -517.80 22 21

341

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -522.77 13 11

342

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -523.05 10 7

Kink-turn

343

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -527.42 14 13

344

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -531.53 8 8

345

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -536.29 13 11

346

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -538.29 6 5

347

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -540.93 6 6

UAA/GAN

348

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -546.41 5 4

Isolated tWW turn

349

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -554.25 6 5

350

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -554.52 9 7

Symmetric double minor groove platform

351

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -557.38 5 5

tSH-tHW

352

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -559.36 5 5

353

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -561.38 7 4

354

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -564.72 6 5

355

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -569.92 8 5

356

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -570.36 11 9

Kink-turn related

357

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -571.69 5 4

Isolated non-canonical cWW pair

358

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -571.96 7 5

359

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -573.22 4 4

360

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -582.57 19 18

361

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -613.09 15 13

362

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -614.41 5 4

Isolated non-canonical cWW pair

363

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -618.36 17 16

Kink-turn related

364

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -623.51 5 5

Isolated tHS basepair with bulges

365

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -626.91 5 5

Isolated cWS basepair

366

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -637.34 6 6

Double sheared with non-canonical cWW

367

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -637.40 20 18

368

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -639.28 6 5

369

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -640.79 5 5

Isolated cWH basepair

370

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -653.09 5 4

Tandem non-canonical cWW pairs

371

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -655.90 5 5

UAA/GAN related

372

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -673.73 5 5

Tandem non-canonical cWW pairs

373

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -692.35 7 6

Triple non-canonical cWW pairs

374

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -697.47 6 6

5x5 Sarcin-Ricin with intercalated A; G-bulge

375

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -701.95 5 5

Double sheared

376

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -713.54 7 6

UAA/GAN variation

377

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4551.30 19 18

378

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4763.01 16 15

379

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -5077.55 11 11

380

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -5095.38 12 11

Bacterial 5S Loop E

381

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -5180.22 10 7

Other IL

382

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -5225.54 10 7

Part of G-quadruplex

383

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -5234.76 9 7

384

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -5263.52 9 8

385

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -5330.23 10 9

Kink-turn with non-sequential stacking

386

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5363.53 18 15

387

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5406.18 14 13

388

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5407.58 14 13

389

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -5654.71 8 8

390

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -5696.53 9 6

391

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -5820.78 8 7

tSH-tWH-tHS-cWW

392

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -6105.08 6 6

tSH-tHW-tWH-tHS

393

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6236.37 11 8

394

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -6258.29 10 6

395

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -6889.65 8 7

Quadruple sheared

396

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -6901.10 10 9

Kink-turn

397

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -7024.28 9 6

C-loop with bulged stacked A's

398

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -7239.78 9 5

8-nt loop receptor

399

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -7664.79 6 6

Triple sheared

400

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -8276.23 8 6

401

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8540.18 5 3

C-loop

402

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -8589.69 7 5

Other IL

403

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -8616.72 7 6

404

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -8629.64 5 5

tSH-tWH-tHS

405

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -9339.17 6 6

Triple sheared

406

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 5 2

C-loop

407

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 4 4

408

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 5 5

Isolated non-canonical cWW pair

409

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9999.00 4 4

Multiple bulged bases

410

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 5 4

411

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 5 4

Coloring options: