RNA 3D Hub

JAR3D Query RF00210-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF00210 maps to these 3 chains: 2NBX|1|A, 8HUJ|1|C, 8J7R|1|C See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 17 Internal loop

Column numbers: 171-172, 254-263 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    GA*GUGC---AAC   82

    
    GA*GUGC---AAA    3

    
    CU*CCAGGACGAC    1

    
    CU*CCAGGGAAAC    1

    
    CA*UUGG---UUC    1

    
    GA*GUGC---AGC    1

    
    GA*GUGC---AUU    1

    
    GA*GUGU---AAC    1

    
    GC*UGGU----UU    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

89.13 -4.47 6 2

2

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -19.45 5 2

3

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -30.19 5 3

4

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -31.97 4 2

SSU/LSU pseudoknot

5

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -32.86 4 3

Major groove intercalation

6

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -35.31 5 3

7

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -40.03 4 3

8

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -43.05 4 4

9

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -46.23 4 3

10

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -51.44 8 5

11

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -53.43 6 4

Minor groove platform

12

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -58.27 6 3

13

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -61.97 8 5

14

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -65.22 6 4

Vitamin B12 Aptamer

15

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -69.13 8 4

16

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -77.48 6 5

17

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -79.11 7 5

18

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -80.32 9 5

Major groove intercalation

19

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -80.70 7 5

20

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -81.00 6 5

Kink-turn related

21

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -81.01 9 6

22

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -85.57 8 6

23

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -87.14 7 3

24

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -90.17 7 6

25

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -90.19 5 4

26

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -90.27 6 5

27

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -92.18 7 5

28

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -94.77 4 3

29

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -95.40 9 6

30

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -95.55 6 4

31

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -97.81 6 5

cWH basepair with bulged bases

32

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -98.19 8 5

33

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -100.53 7 6

34

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -101.20 5 2

Multiple bulged bases

35

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -101.28 8 6

36

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -102.78 6 4

37

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -103.29 9 6

38

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -103.38 7 7

39

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -103.79 9 5

40

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -104.25 3 2

41

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -105.48 6 5

42

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -106.24 7 5

43

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -108.44 6 5

44

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -109.70 8 5

45

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -111.93 7 3

46

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -114.76 9 7

47

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -114.89 9 6

48

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -115.61 9 7

Reverse kink-turn related

49

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -116.43 6 5

50

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -117.55 9 5

51

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -117.73 6 4

52

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -117.97 7 5

53

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -119.94 7 4

54

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -121.38 6 4

55

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -121.77 6 5

56

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -123.24 6 6

57

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -124.40 8 5

58

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -125.72 8 4

59

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -125.89 8 6

60

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -126.20 5 5

Pseudoknot

61

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -133.34 8 5

62

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -134.36 9 7

63

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -135.81 6 5

180 degree turn

64

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -137.85 4 4

65

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -142.19 8 6

66

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -144.36 10 6

Pseudoknot

67

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -144.55 9 6

Reverse turn

68

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -150.22 6 5

Kink-turn

69

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -150.54 10 7

70

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -154.30 9 6

71

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -155.37 8 6

72

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -158.34 5 4

73

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -159.19 6 3

74

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -161.76 6 3

Left turn

75

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -162.01 9 7

76

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -164.46 8 7

77

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -165.54 6 4

78

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -165.72 6 5

79

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -166.69 6 4

80

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -167.13 6 4

Major groove minor groove platform with intercalation; mini C-loop

81

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -167.69 7 5

82

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -167.87 10 8

83

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -168.73 8 5

Intercalated tWH

84

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -169.13 7 5

85

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -170.04 6 5

86

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -170.48 9 6

87

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -170.98 7 6

tSH-tHW

88

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -174.13 6 3

89

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -174.56 7 6

90

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -174.97 6 4

Isolated non-canonical cWW pair

91

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -176.03 10 7

92

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -177.80 5 5

93

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -178.20 7 5

94

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -178.34 6 5

95

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -179.56 6 4

96

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -179.59 8 4

Bulged stacked bases

97

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -179.70 5 3

98

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -180.33 6 4

99

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -182.16 6 5

Reverse kink-turn

100

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -182.30 11 9

101

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -182.43 4 4

102

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -183.44 6 4

Multiple bulged bases

103

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -184.35 8 7

104

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -184.55 4 3

105

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -185.22 5 3

106

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -185.73 7 4

107

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -186.54 6 5

108

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -187.77 12 9

109

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -187.79 5 4

110

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -187.82 10 7

111

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -188.30 7 6

112

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -189.36 6 3

113

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -190.02 6 3

114

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -191.39 9 7

115

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -191.46 9 9

116

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -192.22 6 3

117

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -192.35 10 9

118

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -196.58 8 6

119

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -198.44 7 6

Kink-turn

120

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -201.49 6 3

121

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -206.74 10 7

122

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -208.82 4 3

Major groove intercalation

123

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -209.45 7 6

UAA/GAN related

124

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -212.64 10 9

125

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -213.28 8 8

126

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -214.61 13 11

127

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -215.26 7 6

128

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -216.16 7 6

129

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -217.46 3 3

Minor groove platform

130

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -218.54 7 4

131

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -219.56 8 7

132

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -219.89 5 3

Major groove platform with intercalated tWH

133

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -222.73 5 3

Major groove minor groove platform; mini C-loop

134

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -226.07 8 8

135

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -226.92 5 5

UAA/GAN with extra stack

136

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -227.20 4 3

137

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -227.61 4 4

138

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -228.50 7 4

139

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -229.34 11 9

140

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -229.82 11 10

141

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -231.72 10 8

Minor groove platform related

142

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -232.02 6 4

Kink-turn

143

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -234.94 4 3

144

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -234.98 9 7

145

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -235.45 12 12

Kink-turn related

146

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -235.86 15 12

147

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -237.05 9 9

148

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -239.77 4 3

Minor groove platform, major groove intercalation

149

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -240.77 13 10

150

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -241.08 7 6

tHW-tHW cross-strand stack

151

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -241.44 13 12

152

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -241.71 9 8

153

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -243.05 11 10

154

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -244.19 5 5

155

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -245.11 8 6

156

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -246.74 7 4

157

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -247.30 9 9

158

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -248.14 7 6

Reverse kink-turn related

159

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -248.17 5 4

160

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -248.62 7 5

161

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -248.70 11 9

162

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -249.63 9 9

163

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -249.80 4 3

164

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -252.27 4 4

165

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -254.18 12 12

Pseudoknot

166

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -254.74 6 2

167

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -256.49 9 8

8x6 Sarcin-Ricin with inserted A; G-bulge

168

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -256.59 9 8

tSH-tHS-tHW

169

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -261.58 6 4

170

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -261.97 7 6

Kink-turn from U4

171

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -262.52 3 3

172

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -265.19 5 3

173

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -266.39 8 8

174

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -266.43 13 11

175

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -267.31 13 11

176

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -267.60 6 5

177

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -270.02 6 4

178

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -270.14 7 5

179

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -271.25 8 7

Sarcin-Ricin target in LSU H95; G-bulge

180

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -271.63 13 11

181

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -272.39 10 8

182

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -272.79 4 3

183

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -273.55 7 5

184

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -273.57 8 7

Kink-turn related

185

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -275.28 7 5

Other IL

186

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -277.28 9 6

187

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -277.84 10 7

Kink-turn with embedded cWW pair

188

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -278.47 9 8

189

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -278.77 5 3

190

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -279.04 7 4

191

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -280.42 12 10

192

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -281.02 10 8

193

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -281.32 8 5

tSH-tHW

194

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -282.97 8 5

Decoding loop related

195

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -283.09 12 10

196

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -283.22 9 5

Kink-turn related

197

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -283.35 6 4

198

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -285.39 10 9

199

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -286.22 10 8

200

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -288.58 6 3

201

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -288.67 6 3

202

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -289.04 6 6

203

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -290.38 14 14

Kink-turn

204

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -290.83 8 6

205

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -293.41 7 5

206

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -293.72 10 8

207

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -294.44 9 6

208

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -294.87 6 3

209

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -294.98 4 3

Major groove platform

210

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -298.19 8 7

211

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -298.29 10 10

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

212

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -299.89 6 4

213

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -303.06 5 4

214

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -305.11 6 6

215

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -305.76 15 13

216

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -306.99 9 8

Kink-turn

217

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -308.25 8 6

218

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -311.92 11 11

Pseudoknot

219

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -312.81 7 3

220

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -316.10 10 9

221

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -316.58 10 8

222

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -320.61 12 11

223

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -320.87 8 6

AAA cross-strand stack

224

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -320.88 9 8

8x6 Sarcin-Ricin with inserted Y; G-bulge

225

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -325.01 5 4

226

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -327.15 11 11

10x8 Sarcin-Ricin; G-bulge

227

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -327.41 9 8

228

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -331.76 12 10

229

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -337.28 16 14

230

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -338.89 6 4

231

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -339.27 6 3

232

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -342.00 6 4

233

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -348.79 12 11

234

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -348.84 14 14

235

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -349.75 11 9

236

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -350.15 12 12

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

237

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -352.82 15 15

238

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -353.57 17 16

239

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -360.45 11 10

tSH-tHW-tHH-tHS

240

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -360.62 4 4

Minor groove platform

241

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -364.89 4 4

242

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -370.25 4 4

Decoding loop related

243

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -373.10 6 4

244

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -373.29 6 4

245

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -376.72 9 7

Part of G-quadruplex

246

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -379.61 15 13

247

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -384.30 9 8

7x7 Sarcin-Ricin with intercalated A; G-bulge

248

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -386.79 9 6

249

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -392.88 9 7

Kink-turn

250

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -397.03 9 8

Kink-turn

251

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -397.91 11 10

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

252

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -398.11 19 17

253

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -400.83 10 7

254

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -408.95 7 5

Triple sheared related

255

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -409.29 5 4

256

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -410.78 10 10

257

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -411.35 6 4

258

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -415.73 6 2

259

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -416.89 7 4

Receptor of 11-nt loop-receptor motif

260

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -418.21 12 10

261

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -418.92 6 6

262

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -420.31 12 10

263

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -420.73 12 11

264

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -426.95 8 7

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

265

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -427.96 7 7

266

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -428.23 5 4

267

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -430.61 5 3

Minor groove platform

268

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -436.06 8 8

tWH-tWH-tHW-tHW

269

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -437.17 19 18

270

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -437.57 6 5

Double sheared; A in syn; two near cWW pairs

271

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -437.97 5 3

Intercalated cWS

272

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -439.34 7 6

6x5 Sarcin-Ricin; G-bulge

273

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -440.21 10 7

Kink-turn related

274

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -440.90 6 5

275

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -441.99 5 5

276

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -443.78 5 3

Multiple bulged bases

277

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -445.73 9 7

278

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -446.15 8 7

279

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -446.42 4 3

280

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -447.89 8 6

UAA/GAN with tHH

281

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -448.62 5 4

282

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -451.32 4 3

283

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -451.63 16 16

284

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -451.83 11 9

285

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -453.11 21 19

286

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -454.26 6 4

Major groove platform

287

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -459.42 9 8

8x6 Sarcin-Ricin with bulged A; G-bulge

288

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -460.01 7 6

Triple sheared with non-canonical cWW

289

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -461.92 19 18

290

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -465.42 6 5

UAA/GAN

291

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -465.58 12 12

292

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -466.96 10 8

8x7 Sarcin-Ricin; G-bulge

293

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -469.83 8 7

tSH-tSH-tHH-tHS

294

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -471.15 6 6

295

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -474.32 11 9

296

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -475.02 7 6

297

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -477.22 8 7

7x6 Sarcin-Ricin; G-bulge

298

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -477.40 5 3

Major groove platform with intercalation

299

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -478.16 5 3

Multiple bulged bases

300

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -479.83 22 20

301

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -481.17 11 9

302

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -488.55 7 6

tSH-tHH-tHS

303

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -498.24 11 9

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

304

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -499.56 7 4

305

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -502.27 11 11

306

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -505.31 9 8

8x7 Sarcin-Ricin; G-bulge

307

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -506.13 6 6

308

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -506.83 13 11

309

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -514.09 8 5

310

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -518.52 7 5

311

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -522.60 8 6

Kink-turn

312

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -523.49 5 4

Stack and bulge

313

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -523.95 6 4

314

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -525.35 21 21

315

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -525.44 7 6

UAA/GAN with extra cWW

316

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -526.09 9 9

317

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -534.74 5 4

318

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -550.39 4 3

Single stack bend

319

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -551.10 6 6

cWH basepair and non-canonical AC

320

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -552.62 12 12

321

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -556.99 7 5

Minor groove platform

322

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -563.75 9 7

Receptor of 11-nt loop-receptor motif

323

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -565.88 6 4

Isolated non-canonical cWW pair

324

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -569.62 17 16

Kink-turn related

325

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -571.87 12 10

326

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -572.02 10 7

Kink-turn

327

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -572.51 9 8

Kink-turn

328

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -575.32 7 7

329

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -582.79 6 5

Double sheared

330

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -583.92 9 9

331

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -585.96 5 4

Isolated non-canonical cWW contact

332

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -588.48 4 3

Isolated non-canonical cWW pair

333

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -595.86 9 8

334

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -596.76 6 4

Single stack bend

335

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -597.49 5 4

336

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -598.18 5 4

Single bulged C

337

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -599.04 3 3

Major groove platform; stack outside cWW

338

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -600.96 7 5

Tandem non-canonical cWW pairs

339

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -601.28 8 5

UAA/GAN

340

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -607.22 7 4

tSH-tHW

341

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -609.57 8 4

342

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -612.73 7 4

343

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -614.48 7 6

Symmetric double minor groove platform

344

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -620.18 10 9

Kink-turn

345

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -625.02 18 18

346

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -626.27 6 4

347

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -628.71 16 16

348

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -630.51 8 5

349

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -630.67 4 4

Single bulged G

350

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -630.88 9 9

Kink-turn related

351

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -640.60 8 5

352

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -644.95 12 12

353

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -645.63 10 9

Kink-turn

354

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -652.43 20 19

355

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -656.79 5 4

Single bulged U

356

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -658.36 4 4

Single bulged A

357

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -662.27 7 6

358

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -671.38 4 4

359

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -682.37 5 5

360

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -689.94 5 5

Isolated cWS basepair

361

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -690.48 6 5

362

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -694.35 5 4

Isolated non-canonical cWW pair

363

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -715.53 7 5

Isolated tHS basepair with bulges

364

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -725.08 5 4

Isolated non-canonical cWW pair

365

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -726.58 6 6

Double sheared with non-canonical cWW

366

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -728.16 6 4

UAA/GAN related

367

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -739.77 5 5

Isolated tWW turn

368

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -741.18 5 4

UAA/GAN variation

369

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -746.97 5 5

370

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -760.48 5 5

Triple non-canonical cWW pairs

371

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -765.07 7 5

5x5 Sarcin-Ricin with intercalated A; G-bulge

372

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -765.78 5 5

Double sheared

373

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -779.99 5 5

Tandem non-canonical cWW pairs

374

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -790.87 6 5

375

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -796.58 7 5

Tandem non-canonical cWW pairs

376

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -803.44 5 5

Isolated cWH basepair

377

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4541.14 17 17

378

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4772.32 16 15

379

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -5064.93 11 10

380

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -5094.25 11 11

Bacterial 5S Loop E

381

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -5174.06 10 7

Part of G-quadruplex

382

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -5183.82 7 7

Other IL

383

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -5251.18 8 8

384

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -5271.48 9 8

385

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -5331.47 11 9

Kink-turn with non-sequential stacking

386

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5355.54 15 15

387

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5407.45 14 13

388

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5409.07 14 13

389

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -5655.87 10 8

390

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -5714.69 9 7

391

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -5807.63 8 6

tSH-tWH-tHS-cWW

392

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -6108.88 8 6

tSH-tHW-tWH-tHS

393

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -6234.82 8 8

394

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -6260.72 8 6

395

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -6870.07 6 6

Quadruple sheared

396

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -6915.09 10 9

Kink-turn

397

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -7022.93 7 6

C-loop with bulged stacked A's

398

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -7250.60 6 5

8-nt loop receptor

399

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -7669.27 7 6

Triple sheared

400

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -8300.88 10 6

401

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8588.91 3 3

C-loop

402

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -8625.53 9 6

403

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -8630.77 6 5

tSH-tWH-tHS

404

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -8630.95 10 6

Other IL

405

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -9312.52 6 5

Triple sheared

406

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 4 2

C-loop

407

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 7 4

408

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -9999.00 6 5

Isolated non-canonical cWW pair

409

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9999.00 7 5

Multiple bulged bases

410

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 8 4

411

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 5 3

Coloring options: