RNA 3D Hub

JAR3D Query RF00210-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF00210 maps to these 3 chains: 2NBX|1|A, 8HUJ|1|C, 8J7R|1|C See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 16 Internal loop

Column numbers: 161-168, 266-274 - This loop does not map to nucleotides in a 3D structure with xyz coordinates. 
    Scored sequences and counts

    
    UUCG-UAG*CA--GCACG   58

    
    CUCG-UAG*CA--GCACG   12

    
    UUCG-UAG*CA--GCACA    9

    
    UUCG-UCG*CA--GCACA    4

    
    UUCG-UAG*CG--GCACG    3

    
    GUGG-UAG*CACCCUGGC    1

    
    GUGG-UAG*CAUCCUGGC    1

    
    UGCUGUAA*UA--CCUGA    1

    
    CUCG-UAG*CA--ACACG    1

    
    UGCU-UAA*AA--ACCUG    1

    
    UUCG-UAA*CA--GCACG    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

1.09 -27.52 7 5

Kink-turn related

2

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -32.86 5 3

7x6 Sarcin-Ricin; G-bulge

3

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -38.45 7 6

4

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -39.81 6 5

5

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -41.86 8 6

6

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -47.07 6 5

7

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -51.08 6 6

8

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -52.62 7 6

7x7 Sarcin-Ricin with intercalated A; G-bulge

9

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -55.34 9 6

10

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -56.70 5 4

11

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -57.66 6 4

Sarcin-Ricin target in LSU H95; G-bulge

12

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -57.78 9 5

13

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -58.75 7 4

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

14

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -62.43 9 5

15

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -69.12 9 6

16

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -70.69 7 5

tSH-tHW-tHH-tHS

17

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -72.83 9 5

18

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -75.66 8 5

8x6 Sarcin-Ricin with inserted A; G-bulge

19

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -79.50 9 5

20

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -81.32 7 4

21

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -81.40 6 4

8x7 Sarcin-Ricin; G-bulge

22

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -83.48 7 5

tSH-tSH-tHH-tHS

23

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -85.16 7 4

6x5 Sarcin-Ricin; G-bulge

24

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -86.91 9 6

Triple sheared with non-canonical cWW

25

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -88.05 8 5

26

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -90.81 9 7

27

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -91.57 8 6

Kink-turn

28

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -92.14 7 4

Triple sheared related

29

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -92.86 7 5

Kink-turn related

30

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -93.52 10 7

31

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -93.55 5 4

8x7 Sarcin-Ricin; G-bulge

32

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -93.69 10 6

tWH-tWH-tHW-tHW

33

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -94.16 10 7

34

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -94.25 10 7

35

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -94.30 9 6

36

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -94.35 7 6

Kink-turn related

37

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -96.88 9 5

38

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -97.34 9 7

39

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -97.69 10 8

40

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -99.42 7 6

Kink-turn with non-sequential stacking

41

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -100.19 7 6

8x6 Sarcin-Ricin with bulged A; G-bulge

42

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -100.28 8 5

Double sheared; A in syn; two near cWW pairs

43

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -101.52 10 7

44

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -101.81 9 7

45

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -103.09 6 6

Kink-turn

46

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -104.04 8 7

47

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -104.58 6 5

48

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -106.01 7 5

Other IL

49

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -107.16 4 3

50

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -108.16 7 6

51

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -108.21 10 7

52

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -108.22 10 8

53

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -108.90 8 6

8x6 Sarcin-Ricin with inserted Y; G-bulge

54

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -111.13 8 5

55

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -112.00 11 8

56

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -112.28 8 8

57

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -112.42 10 8

58

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -113.28 7 5

tSH-tWH-tHS-cWW

59

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -113.52 9 6

60

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -115.20 9 7

61

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -115.51 9 8

62

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -116.38 7 5

tHW-tHW cross-strand stack

63

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -116.66 6 6

tSH-tHW-tWH-tHS

64

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -116.71 8 7

Kink-turn

65

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -117.12 8 8

66

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -118.44 8 6

Kink-turn

67

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -120.18 10 7

Other IL

68

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -120.21 11 10

69

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -120.42 8 7

10x8 Sarcin-Ricin; G-bulge

70

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -120.67 7 6

Kink-turn with embedded cWW pair

71

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -121.23 9 6

Part of G-quadruplex

72

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -121.35 12 8

Pseudoknot

73

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -123.14 8 7

74

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -123.91 9 5

75

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -124.53 9 6

76

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -124.83 11 7

Reverse turn

77

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -125.26 9 7

78

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -126.56 11 8

79

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -126.97 7 6

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

80

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -127.40 11 8

81

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -127.98 9 7

82

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -129.82 11 8

83

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -129.88 9 7

84

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -130.44 12 10

85

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -131.01 9 6

86

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -131.65 10 8

87

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -133.21 9 6

88

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -133.93 8 6

89

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -135.49 11 7

90

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -136.10 7 5

91

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -136.80 10 8

Kink-turn

92

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -138.11 11 10

93

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -140.77 10 8

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

94

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -141.43 10 8

95

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -141.88 7 6

96

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -142.27 6 5

tSH-tHH-tHS

97

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -142.68 9 8

98

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -144.53 8 6

99

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -145.58 10 8

100

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -146.44 8 6

Reverse kink-turn

101

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -147.05 9 8

102

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -147.29 7 6

Quadruple sheared

103

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -150.11 9 8

104

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -150.19 9 9

105

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -151.30 7 7

tSH-tHS-tHW

106

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -151.61 9 8

107

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -153.89 9 6

108

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -153.94 6 6

Kink-turn

109

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -155.28 9 6

110

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -156.35 8 6

UAA/GAN related

111

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -157.69 8 7

UAA/GAN with extra stack

112

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -158.07 6 5

113

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -159.23 6 6

Kink-turn

114

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -159.50 6 6

Kink-turn

115

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -160.25 9 8

Bacterial 5S Loop E

116

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -160.40 9 6

UAA/GAN with tHH

117

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -161.21 7 6

118

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -163.24 8 7

UAA/GAN with extra cWW

119

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -164.04 9 8

120

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -165.01 10 6

121

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -165.57 9 8

122

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -166.23 14 10

123

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -166.69 10 7

124

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -169.19 10 6

125

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -169.58 12 10

126

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -170.32 9 6

127

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -170.47 14 10

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

128

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -171.19 12 9

129

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -171.29 8 8

130

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -171.86 13 9

131

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -174.73 7 7

Kink-turn

132

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -175.62 12 9

133

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -176.66 10 9

134

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -180.09 8 7

135

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -181.07 11 10

136

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -182.11 7 5

137

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -182.29 7 7

138

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -182.47 10 9

tSH-tHW

139

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -183.92 8 6

140

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -184.57 8 6

141

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -186.63 10 7

Kink-turn

142

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -192.14 11 10

143

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -192.73 6 6

144

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -193.70 7 7

Kink-turn related

145

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -193.72 9 9

146

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -196.38 11 8

147

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -196.68 10 10

148

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -197.19 8 8

149

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -201.11 8 6

150

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -201.32 9 6

Pseudoknot

151

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -201.98 14 11

152

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -203.09 7 7

153

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -204.63 7 6

154

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -204.64 8 7

155

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -206.03 9 8

156

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -206.46 9 7

157

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -209.22 12 12

158

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -210.36 10 9

159

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -212.85 12 9

160

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -214.18 12 12

161

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -219.79 7 7

Kink-turn from U4

162

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -222.82 12 8

163

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -224.69 11 8

Minor groove platform related

164

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -224.84 9 6

165

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -225.20 9 8

166

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -225.55 9 7

167

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -225.94 9 8

168

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -227.63 7 7

169

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -228.54 6 5

170

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -228.64 6 6

Triple sheared

171

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -230.98 8 6

cWH basepair and non-canonical AC

172

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -233.43 10 8

Vitamin B12 Aptamer

173

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -235.01 10 9

174

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -235.89 9 7

175

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -239.07 7 6

180 degree turn

176

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -239.96 8 6

177

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -240.63 7 7

178

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -242.05 8 6

179

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -242.82 8 7

180

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -243.81 11 10

181

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -244.66 16 13

182

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -245.34 8 8

183

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -248.51 5 4

Double sheared with non-canonical cWW

184

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -248.89 9 8

cWH basepair with bulged bases

185

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -249.07 10 9

186

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -249.33 16 14

Kink-turn

187

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -250.53 6 6

188

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -254.47 10 8

189

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -257.24 16 14

Kink-turn related

190

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -257.82 8 7

tSH-tHW

191

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -260.48 8 6

192

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -263.52 9 9

193

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -264.81 9 7

194

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -265.47 7 6

195

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -269.77 6 6

AAA cross-strand stack

196

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -271.85 10 7

197

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -272.22 9 8

198

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -273.82 10 10

Reverse kink-turn related

199

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -274.24 8 5

200

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -274.62 10 9

Kink-turn

201

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -275.67 12 8

202

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -276.13 8 7

Intercalated tWH

203

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -277.30 7 7

Receptor of 11-nt loop-receptor motif

204

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -279.03 14 12

205

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -280.47 8 7

206

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -283.65 7 5

207

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -283.96 12 10

208

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -284.71 9 6

209

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -286.10 8 8

Receptor of 11-nt loop-receptor motif

210

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -293.73 7 7

211

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -294.31 7 6

UAA/GAN

212

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -300.79 10 8

213

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -301.40 9 7

Decoding loop related

214

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -306.82 6 6

UAA/GAN

215

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -307.12 8 5

216

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -309.03 7 6

217

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -310.14 10 10

218

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -313.01 7 6

219

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -315.14 10 8

220

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -316.78 5 5

5x5 Sarcin-Ricin with intercalated A; G-bulge

221

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -317.84 15 12

Pseudoknot

222

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -318.49 10 8

223

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -324.03 9 6

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

224

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -325.99 9 6

225

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -329.04 19 16

226

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -329.45 6 6

tSH-tWH-tHS

227

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -330.51 8 8

228

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -334.98 7 6

Triple non-canonical cWW pairs

229

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -338.40 13 11

230

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -338.80 6 6

231

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -338.89 17 14

232

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -339.89 7 6

Double sheared

233

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -341.92 8 5

234

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -343.24 16 15

235

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -343.84 10 7

236

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -350.47 8 6

Isolated non-canonical cWW pair

237

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -352.30 8 7

238

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -355.03 7 7

239

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -359.36 6 6

Triple sheared

240

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -362.84 7 6

241

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -366.23 6 6

242

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -366.38 10 7

243

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -369.84 8 6

Tandem non-canonical cWW pairs

244

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -371.59 9 6

245

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -375.35 14 13

246

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -382.37 18 17

247

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -384.67 6 5

UAA/GAN variation

248

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -394.63 12 10

249

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -395.58 8 7

250

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -396.87 10 8

251

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -397.33 8 7

252

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -403.18 9 7

253

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -404.86 19 18

254

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -406.24 20 18

255

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -409.18 8 7

256

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -411.85 7 6

257

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -412.74 10 6

258

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -416.26 8 7

Other IL

259

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -417.02 7 7

tSH-tHW

260

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -432.27 7 7

261

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -443.65 19 17

262

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -447.28 9 8

263

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -451.79 8 5

Symmetric double minor groove platform

264

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -452.57 9 7

265

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -474.80 6 6

UAA/GAN related

266

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -476.81 7 7

267

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -485.13 8 7

268

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -487.17 6 6

Double sheared

269

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -487.48 7 6

270

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -489.16 7 6

271

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -490.44 7 6

Tandem non-canonical cWW pairs

272

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -492.04 7 6

273

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -493.59 7 6

Tandem non-canonical cWW pairs

274

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -499.55 8 6

275

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -503.20 7 6

276

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -513.53 10 8

277

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -516.03 8 7

278

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -518.50 10 9

279

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -519.69 8 6

280

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -521.36 8 6

281

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -524.28 7 7

Isolated non-canonical cWW pair

282

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -544.13 20 19

283

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -544.66 7 7

284

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -556.07 9 7

285

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -557.68 7 7

286

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -559.69 14 12

287

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -574.62 7 6

288

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -574.93 18 16

289

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -576.76 17 14

Kink-turn related

290

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -578.43 14 12

291

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -581.68 8 7

292

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -584.41 7 7

293

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -587.19 10 10

294

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -592.73 7 7

295

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -597.90 12 10

296

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -603.00 8 7

Isolated non-canonical cWW pair

297

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -613.63 7 7

298

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -624.07 8 7

299

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -629.83 8 8

300

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -630.74 10 7

301

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -641.05 10 7

Minor groove platform

302

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -646.67 9 7

Reverse kink-turn related

303

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -650.13 9 7

Major groove minor groove platform with intercalation; mini C-loop

304

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -682.15 8 7

Isolated non-canonical cWW contact

305

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -696.28 8 7

Isolated cWS basepair

306

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -701.91 7 7

Isolated tWW turn

307

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -702.22 8 7

Decoding loop related

308

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -707.11 8 7

Isolated cWH basepair

309

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -712.00 7 7

Isolated non-canonical cWW pair

310

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -732.54 8 7

Isolated non-canonical cWW pair

311

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -751.04 15 13

312

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -760.31 8 7

313

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -761.00 8 8

Isolated tHS basepair with bulges

314

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -776.48 15 13

315

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -862.15 8 7

Stack and bulge

316

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -917.94 9 8

317

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -926.78 8 8

Multiple bulged bases

318

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -1034.69 9 8

Isolated non-canonical cWW pair

319

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4503.70 15 14

320

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4723.31 13 12

321

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -5149.03 11 11

322

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -5161.20 10 10

323

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -5169.75 10 10

324

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -5226.30 10 9

325

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -5228.74 10 9

326

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -5231.02 13 12

Pseudoknot

327

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5319.71 15 12

328

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -5343.05 11 9

329

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5343.25 10 9

330

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5345.28 11 9

331

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -5359.66 15 13

Part of G-quadruplex

332

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -5485.85 11 8

Kink-turn related

333

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -5561.12 11 9

334

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -5714.67 11 10

335

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -5766.57 9 8

336

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -5787.92 9 7

337

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -5848.54 11 10

338

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -5964.54 9 8

339

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -5988.87 12 10

340

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -6123.39 10 8

341

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -6192.41 13 10

342

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -6247.02 11 9

343

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -6394.61 10 9

Minor groove platform

344

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -6413.60 10 8

345

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -6541.95 10 8

346

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -6582.59 8 6

Kink-turn

347

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -6689.41 10 9

Major groove intercalation

348

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -6806.37 9 6

C-loop with bulged stacked A's

349

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -7031.43 9 8

350

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -7219.87 11 8

351

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -7247.48 8 7

352

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -7249.18 10 8

8-nt loop receptor

353

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -7298.03 7 7

354

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -7348.99 7 7

355

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -7415.80 9 8

SSU/LSU pseudoknot

356

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -7508.64 10 7

357

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -7584.19 9 9

358

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -7634.60 7 7

359

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -7702.05 10 8

Major groove intercalation

360

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -7991.51 9 8

361

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -8210.31 7 7

362

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -8301.32 9 8

363

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -8377.85 9 9

Major groove platform

364

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8670.53 8 6

C-loop

365

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -8733.69 8 7

Multiple bulged bases

366

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -9277.80 9 8

367

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -9602.60 8 7

368

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -9626.90 10 8

369

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -9734.23 9 9

Bulged stacked bases

370

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -9773.78 9 7

Multiple bulged bases

371

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 9

Single bulged G

372

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 8 7

373

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 8 8

Major groove platform with intercalation

374

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 9 7

C-loop

375

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 9

376

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -9999.00 10 8

Major groove platform with intercalated tWH

377

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 8 8

Minor groove platform

378

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 9

379

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 10 8

380

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 9 7

381

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 7 7

382

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 9

Single stack bend

383

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 9 8

Left turn

384

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 9

Single bulged A

385

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 8

386

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -9999.00 8 8

387

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9999.00 9 9

Multiple bulged bases

388

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 9 8

389

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -9999.00 8 7

Minor groove platform

390

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 9 8

Major groove platform

391

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9999.00 9 8

Major groove platform; stack outside cWW

392

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 9 8

Minor groove platform

393

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 8

394

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 9

395

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 9

Single bulged C

396

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 9

397

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 7

Major groove intercalation

398

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 9 8

Major groove minor groove platform; mini C-loop

399

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 8 8

400

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 8

401

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 9 9

402

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 10 8

403

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 8

Intercalated cWS

404

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -9999.00 8 8

Multiple bulged bases

405

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 6 6

406

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 8 7

407

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -9999.00 8 7

408

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 9

Single bulged U

409

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 9

Single stack bend

410

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 10 8

411

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 8 8

Minor groove platform, major groove intercalation

Coloring options: