RNA 3D Hub

JAR3D Query RF00210-CCF-3.98 completed
Run on Motif Atlas Version using the Rfam secondary structure. Run with the CaCoFold secondary structure.

Rfam family RF00210 maps to these 3 chains: 2NBX|1|A, 8HUJ|1|C, 8J7R|1|C See more about them at RNA 3D Hub by filtering on the chain or the Rfam family.

Loop 26 Internal loop

Column numbers: 415-422, 448-456 - View nucleotides in PDB file(s) 
    Scored sequences and counts

    
    CAGGUACC*GAUCU-GAG   85

    
    AAGGUACC*GAUCU-GAU    2

    
    CAGGUACC*GAUCUUGAG    1

    
    CAGGUACA*GAUCU-GAG    1

    
    CAGGUACC*AAUCU-GAG    1

    
    UAGGUACC*GAUCU-GAG    1

    
    CAGGUACC*GAUCU-GA-    1
Click on headings to reorder table
# Matching motif group Acceptance Rate Mean Cutoff Score Full Edit Distance Interior Edit Distance Basepair Diagram and most common annotation
1

Motif group IL_46174.3

Basepair signature:
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

0.00 -36.66 6 5

Kink-turn with non-sequential stacking

2

Motif group IL_74746.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-cWW

0.00 -39.45 9 7

3

Motif group IL_19048.1

Basepair signature:
cWW-L-R-L-R-L-cSH-L-R-cWW-cWW

0.00 -40.81 9 6

4

Motif group IL_29198.2

Basepair signature:
cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

0.00 -55.74 8 4

7x7 Sarcin-Ricin with intercalated A; G-bulge

5

Motif group IL_36729.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-tWH-R-L-R-L-cWW

0.00 -57.52 9 7

6

Motif group IL_31561.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW

0.00 -65.31 6 4

7

Motif group IL_21630.1

Basepair signature:
cWW-L-R-L-R-L-R-cSH-R-tWH-R-cWW-cWW

0.00 -69.52 9 7

8

Motif group IL_68243.1

Basepair signature:
cWW-L-cWW-cWW-R-L-tHS-cWW

0.00 -78.68 7 7

9

Motif group IL_58126.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -86.19 8 7

10

Motif group IL_70801.1

Basepair signature:
cWW-cWW-L-R-tWW-L-R-L-cWW

0.00 -86.84 9 5

11

Motif group IL_84694.2

Basepair signature:
cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

0.00 -86.93 9 8

tSH-tHW-tHH-tHS

12

Motif group IL_42231.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-cSS-L

0.00 -88.19 10 6

13

Motif group IL_49867.1

Basepair signature:
cWW-cWW-L-R-L-R-tHW-R-L-L-cWW

0.00 -89.91 7 7

14

Motif group IL_31915.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -91.99 9 7

15

Motif group IL_43858.1

Basepair signature:
cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -99.00 10 7

16

Motif group IL_85630.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L-cWW-L

0.00 -100.73 9 6

17

Motif group IL_43467.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -102.48 12 9

Pseudoknot

18

Motif group IL_43547.1

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-R-L-cWW-L-cWW

0.00 -103.03 11 7

10x8 Sarcin-Ricin; G-bulge

19

Motif group IL_61286.1

Basepair signature:
cWW-L-R-L-R-L-tWH-L-tHS-cWW

0.00 -105.88 10 7

8x6 Sarcin-Ricin with inserted A; G-bulge

20

Motif group IL_81392.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L

0.00 -108.25 13 11

21

Motif group IL_80604.6

Basepair signature:
cWW-cWW-tWH-tWH-tHW-tHW-cWW

0.00 -108.43 9 7

22

Motif group IL_09129.2

Basepair signature:
cWW-L-R-tWH-L-R-L-tWW-cWW

0.00 -109.70 9 7

23

Motif group IL_73002.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -110.66 11 8

24

Motif group IL_65851.3

Basepair signature:
cWW-cWW-cWW-cWW-R-tHW-tSH-tHS-L

0.00 -110.89 9 7

25

Motif group IL_20047.1

Basepair signature:
cWW-tSH-tWH-cSH-cHW-cWH-cWW-cWW

0.00 -112.02 9 7

26

Motif group IL_34470.3

Basepair signature:
cWW-cSH-cWW-tHH-tWH-tHS-cWW-tSH-R-cWW-L

0.00 -112.06 11 8

9x8 Sarcin-Ricin with GA cWW pair; G-bulge

27

Motif group IL_41756.4

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

0.00 -112.14 10 6

8x6 Sarcin-Ricin with inserted Y; G-bulge

28

Motif group IL_78349.3

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -112.57 10 7

29

Motif group IL_15107.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-L-L-L-cWW

0.00 -114.32 12 10

30

Motif group IL_70670.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-R-L-R-tWH-L-R-L

0.00 -115.66 11 8

9x9 Sarcin-Ricin with pseudoknotted region; G-bulge

31

Motif group IL_04736.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -118.98 10 8

32

Motif group IL_77278.1

Basepair signature:
cWW-tWW-L-tWW-cWW-L

0.00 -120.66 10 8

33

Motif group IL_56455.6

Basepair signature:
cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

0.00 -121.86 8 7

Bacterial 5S Loop E

34

Motif group IL_04346.10

Basepair signature:
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -122.32 8 7

8x7 Sarcin-Ricin; G-bulge

35

Motif group IL_59724.1

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW

0.00 -122.71 9 7

8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge

36

Motif group IL_04073.1

Basepair signature:
cWW-L-R-L-tSH-L-R-cWW-L-R-R-L-cWW-L

0.00 -123.20 13 9

37

Motif group IL_88116.2

Basepair signature:
cWW-tSH-L-R-L-R-L-R-cWW-cWW

0.00 -124.15 10 7

38

Motif group IL_59049.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -124.37 11 9

39

Motif group IL_57741.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -126.09 10 8

40

Motif group IL_68405.1

Basepair signature:
cWW-cSS-L-tWH-tHW-cWW-cWW

0.00 -126.25 11 7

Kink-turn related

41

Motif group IL_54041.2

Basepair signature:
cWW-L-R-L-R-tWH-L-cWW

0.00 -127.08 7 6

tHW-tHW cross-strand stack

42

Motif group IL_37752.1

Basepair signature:
cWW-L-R-L-R-tHW-R-L-cWW

0.00 -127.81 11 9

43

Motif group IL_02349.4

Basepair signature:
cWW-tSH-tWH-cSH-tWH-tHS-cWW

0.00 -129.23 10 6

8x6 Sarcin-Ricin with bulged A; G-bulge

44

Motif group IL_17069.5

Basepair signature:
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

0.00 -129.70 10 7

Kink-turn related

45

Motif group IL_59258.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW

0.00 -133.56 8 6

46

Motif group IL_13874.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWH-cHW-cWW

0.00 -133.76 9 7

47

Motif group IL_54177.4

Basepair signature:
cWW-cSW-tWH-L-R-L-R-tHS-cWW

0.00 -134.47 8 8

48

Motif group IL_28304.1

Basepair signature:
cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW

0.00 -136.25 13 9

49

Motif group IL_65594.1

Basepair signature:
cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW

0.00 -137.74 10 9

8x7 Sarcin-Ricin; G-bulge

50

Motif group IL_94910.1

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L

0.00 -138.29 8 7

Kink-turn

51

Motif group IL_58350.1

Basepair signature:
cWW-L-R-tWH-tWH-L-R-L-cWW-L

0.00 -138.50 14 10

52

Motif group IL_32016.1

Basepair signature:
cWW-tSH-tSH-tSS-tHS-L-R-cWW

0.00 -139.16 10 7

Kink-turn

53

Motif group IL_12745.1

Basepair signature:
cWW-tWH-tWH-tHW-tHW-cWW

0.00 -140.59 10 8

tWH-tWH-tHW-tHW

54

Motif group IL_95727.1

Basepair signature:
cWW-L-tSH-L-tHW-tHS-R-cWW-L

0.00 -141.86 7 7

Kink-turn

55

Motif group IL_77870.1

Basepair signature:
cWW-L-R-L-tHS-L-cWW-L-cWW

0.00 -143.19 7 7

56

Motif group IL_42778.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -143.85 8 6

57

Motif group IL_85222.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -144.31 8 7

58

Motif group IL_04021.2

Basepair signature:
cWW-L-R-tSH-tSH-tHS-cWW-cWW

0.00 -146.47 9 7

Triple sheared with non-canonical cWW

59

Motif group IL_61249.1

Basepair signature:
cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

0.00 -146.50 11 9

60

Motif group IL_80926.1

Basepair signature:
cWW-cWW-tSH-tHS-L-cWW

0.00 -148.15 6 6

61

Motif group IL_04600.1

Basepair signature:
cWW-cWW-L-R-L-R-L-R-cWW-cWW

0.00 -149.98 12 9

62

Motif group IL_91698.1

Basepair signature:
cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW

0.00 -150.18 10 9

63

Motif group IL_01488.3

Basepair signature:
cWW-tSS-tSH-L-R-tHS-L-cWW

0.00 -152.24 7 6

Kink-turn

64

Motif group IL_69229.3

Basepair signature:
cWW-L-tSH-L-tHS-cWW-cWW

0.00 -152.52 8 7

Kink-turn

65

Motif group IL_82292.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -153.30 7 5

66

Motif group IL_66663.1

Basepair signature:
cWW-L-tHS-tSW-tWH-cWH-cWW-L-cWW

0.00 -154.09 10 9

67

Motif group IL_89047.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWH-L-cWW

0.00 -154.32 13 10

68

Motif group IL_45896.1

Basepair signature:
cWW-cWW-cWW

0.00 -154.80 13 11

69

Motif group IL_91636.1

Basepair signature:
cWW-tSH-L-R-L-cWW-L-L

0.00 -155.47 8 6

70

Motif group IL_78472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -156.44 12 9

71

Motif group IL_24254.1

Basepair signature:
cWW-cWW-tHH-cSH-tWH-tHS-cWW

0.00 -158.30 9 8

7x6 Sarcin-Ricin with UU cWW pair; G-bulge

72

Motif group IL_80412.1

Basepair signature:
cWW-tSW-L-cWW-L-L-R-L

0.00 -159.61 11 8

73

Motif group IL_94351.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -159.63 9 5

74

Motif group IL_86012.1

Basepair signature:
cWW-tHS-tWH-cWH-cWW-L-L-cWW

0.00 -159.85 11 8

75

Motif group IL_16665.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -159.88 8 8

76

Motif group IL_29357.1

Basepair signature:
cWW-L-R-L-R-cWH-tHW-cSH-cWW-L-L-cWW-R-R

0.00 -164.37 12 10

77

Motif group IL_33623.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L-R

0.00 -164.48 8 7

78

Motif group IL_67623.1

Basepair signature:
cWW-tSW-cSW-L-cSW-L-R-L-cWW-cWW

0.00 -164.93 10 9

Minor groove platform related

79

Motif group IL_71294.3

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -165.57 11 7

Double sheared; A in syn; two near cWW pairs

80

Motif group IL_13358.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L

0.00 -166.32 12 8

81

Motif group IL_77045.1

Basepair signature:
cWW-L-tSW-L-tHW-cWW-L

0.00 -166.36 12 8

Kink-turn

82

Motif group IL_47346.2

Basepair signature:
cWW-tSH-L-R-tHH-tHS-cWW

0.00 -166.85 11 7

tSH-tSH-tHH-tHS

83

Motif group IL_26307.2

Basepair signature:
cWW-tSH-tHH-cSH-tWH-tHS-cWW

0.00 -167.70 9 7

7x6 Sarcin-Ricin; G-bulge

84

Motif group IL_23038.1

Basepair signature:
cWW-L-R-tWH-L-R-L-cWW-cWW

0.00 -169.98 11 8

85

Motif group IL_85536.2

Basepair signature:
cWW-tSH-L-R-tHS-cWW-cWW

0.00 -170.30 8 6

86

Motif group IL_09570.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R

0.00 -174.29 10 8

87

Motif group IL_93889.1

Basepair signature:
cWW-R-tSH-L-cSH-L-L-R-L-R-L-R-L-R-L-R-L-L

0.00 -174.37 11 10

88

Motif group IL_44438.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -175.78 10 7

89

Motif group IL_28026.3

Basepair signature:
cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

0.00 -178.11 10 9

90

Motif group IL_69543.3

Basepair signature:
cWW-tSH-L-R-tSS-tHS-L-R-cWW

0.00 -178.64 8 7

91

Motif group IL_41853.1

Basepair signature:
cWW-L-tHH-L-tHS-L-cWW-L-L

0.00 -179.49 8 7

92

Motif group IL_69986.1

Basepair signature:
cWW-cHW-L-R-L-R-cWH-cWW

0.00 -179.84 10 8

93

Motif group IL_57188.5

Basepair signature:
cWW-tWW-L-tWW-cWW-cSH

0.00 -180.01 10 8

Kink-turn related

94

Motif group IL_99692.2

Basepair signature:
cWW-tSS-tSH-L-R-R-L-cWW-L-L

0.00 -180.50 8 7

Kink-turn

95

Motif group IL_73759.1

Basepair signature:
cWW-cSH-tHS-cWH-cHW-cWW

0.00 -181.00 7 7

Part of G-quadruplex

96

Motif group IL_55953.3

Basepair signature:
cWW-tSH-tHS-R-L-L-R-cWW

0.00 -182.24 7 6

97

Motif group IL_22564.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -183.36 11 9

98

Motif group IL_88269.4

Basepair signature:
cWW-tWW-cSH-tWH-tHS-cWW

0.00 -183.95 9 6

6x5 Sarcin-Ricin; G-bulge

99

Motif group IL_85652.1

Basepair signature:
cWW-tSH-L-R-L-R-L-cWW-L

0.00 -183.97 11 8

100

Motif group IL_34822.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -185.07 10 8

101

Motif group IL_15991.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L

0.00 -185.50 14 13

102

Motif group IL_04638.3

Basepair signature:
cWW-tSH-tHW-tHS-cSH-cWW-L

0.00 -186.92 8 7

tSH-tHS-tHW

103

Motif group IL_05472.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L

0.00 -187.35 10 10

104

Motif group IL_97697.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -187.66 12 9

Reverse turn

105

Motif group IL_18487.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-cWW

0.00 -188.34 11 8

106

Motif group IL_89099.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-cWW

0.00 -189.05 9 8

Other IL

107

Motif group IL_76308.6

Basepair signature:
cWW-tSH-tHW-tHS-cWW-cWW

0.00 -189.61 9 7

tSH-tWH-tHS-cWW

108

Motif group IL_64900.1

Basepair signature:
cWW-cWW-tSS-tSH-L-tHS-R-cWW-L

0.00 -190.64 9 8

Kink-turn

109

Motif group IL_70923.9

Basepair signature:
cWW-tSS-tSH-L-tHS-tHS-cWW

0.00 -190.68 8 7

Kink-turn

110

Motif group IL_97631.1

Basepair signature:
cWW-L-R-L-R-L-tHS-cWW

0.00 -196.62 9 7

Triple sheared related

111

Motif group IL_29223.1

Basepair signature:
cWW-L-R-L-cWW-cWW-cWW

0.00 -196.82 11 8

112

Motif group IL_73700.1

Basepair signature:
cWW-L-R-L-cWW-L-cWW-tHS-cWW

0.00 -196.95 12 11

113

Motif group IL_60797.1

Basepair signature:
cWW-cWW-tSH-tHW-tHW-L-R-L-cWW-cWW

0.00 -197.46 12 10

114

Motif group IL_74051.1

Basepair signature:
cWW-tSS-tSH-L-tHS-cWW-L

0.00 -199.04 8 7

Kink-turn

115

Motif group IL_06691.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L

0.00 -200.24 9 8

116

Motif group IL_24499.1

Basepair signature:
cWW-cWS-L-R-L-R-cWW-L-cSH-L

0.00 -200.61 11 9

117

Motif group IL_60448.1

Basepair signature:
cWW-L-cWW-L-R-L-tWH-L-tHS-L-R-L-cWW-L-R

0.00 -201.46 14 10

118

Motif group IL_16458.4

Basepair signature:
cWW-L-R-L-R-cSH-tWH-tHS-cWW

0.00 -201.94 8 8

Sarcin-Ricin target in LSU H95; G-bulge

119

Motif group IL_80231.1

Basepair signature:
cWW-L-R-L-R-L-R-tHS-cWW

0.00 -203.48 11 7

Other IL

120

Motif group IL_04307.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -204.45 12 10

121

Motif group IL_54050.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -205.60 11 8

122

Motif group IL_37015.1

Basepair signature:
cWW-tSS-tSS-tHH-L-tHS-L-R-cWW-L

0.00 -208.74 9 9

Kink-turn

123

Motif group IL_85879.1

Basepair signature:
cWW-L-R-tHW-tHW-L-R-L-R-cWW-cWW

0.00 -209.30 12 10

124

Motif group IL_56317.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -209.99 10 8

125

Motif group IL_09044.1

Basepair signature:
cWW-tSH-tHH-L-tHS-cWW

0.00 -210.34 10 9

126

Motif group IL_89312.1

Basepair signature:
cWW-tSH-L-cWS-cWW-L

0.00 -210.60 11 8

127

Motif group IL_31084.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L

0.00 -213.83 11 8

128

Motif group IL_44874.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L-L

0.00 -218.05 8 8

tSH-tHW

129

Motif group IL_33141.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L

0.00 -220.08 11 9

130

Motif group IL_96788.1

Basepair signature:
cWW-tHW-tHS-cWW-cWW

0.00 -220.77 9 7

131

Motif group IL_18472.4

Basepair signature:
cWW-tSW-R-L-R-L-R-cWW

0.00 -225.08 8 7

132

Motif group IL_64403.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW-L-L-R

0.00 -225.97 12 10

133

Motif group IL_70627.3

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -226.93 9 7

UAA/GAN related

134

Motif group IL_25186.4

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -227.08 7 7

135

Motif group IL_69271.3

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R

0.00 -227.10 10 9

136

Motif group IL_33886.1

Basepair signature:
cWW-L-cWW-L-R-L-R-cWW

0.00 -228.54 10 9

Kink-turn with embedded cWW pair

137

Motif group IL_21667.1

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -229.02 10 7

138

Motif group IL_22829.2

Basepair signature:
cWW-L-tHS-L-R-L-cWW-L

0.00 -229.36 9 7

139

Motif group IL_70411.2

Basepair signature:
cWW-tSH-L-tHH-L-cWW

0.00 -233.05 8 6

140

Motif group IL_22854.4

Basepair signature:
cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

0.00 -234.60 8 8

141

Motif group IL_37603.1

Basepair signature:
cWW-L-cWW-L-cWW-L-L

0.00 -236.53 10 7

142

Motif group IL_87284.1

Basepair signature:
cWW-tSH-tHW-tWH-tHS-cWW

0.00 -237.58 10 9

tSH-tHW-tWH-tHS

143

Motif group IL_01038.1

Basepair signature:
cWW-tWH-L-R-tHS-cWW

0.00 -237.63 9 8

UAA/GAN with extra stack

144

Motif group IL_65653.1

Basepair signature:
cWW-tSW-tHW-tWW-tWH-cSH-L-L-tHS-L-cWW-L

0.00 -239.80 12 9

145

Motif group IL_09908.1

Basepair signature:
cWW-L-tHH-L-R-L-cWW-L

0.00 -240.27 8 8

Reverse kink-turn

146

Motif group IL_99498.1

Basepair signature:
cWW-L-R-tHW-cWW

0.00 -240.83 12 9

147

Motif group IL_06136.2

Basepair signature:
cWW-tHS-cWW-tHS-tSH-tSH-cWW

0.00 -245.07 8 7

Quadruple sheared

148

Motif group IL_61242.1

Basepair signature:
cWW-cWW-L-R-L-R-cWW

0.00 -250.87 9 8

149

Motif group IL_49612.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -251.71 8 7

150

Motif group IL_34737.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -257.95 7 7

151

Motif group IL_00981.1

Basepair signature:
cWW-tWH-tHH-tHS-cWW

0.00 -258.99 10 8

UAA/GAN with tHH

152

Motif group IL_06029.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

0.00 -260.54 14 14

Kink-turn

153

Motif group IL_12697.1

Basepair signature:
cWW-cWW-L-R-tHS-cWW

0.00 -265.16 11 8

154

Motif group IL_96332.5

Basepair signature:
cWW-cWW-L-R-L-cWW-L

0.00 -265.40 9 7

155

Motif group IL_51265.3

Basepair signature:
cWW-tSS-tHS-tSH-cWW-L

0.00 -265.64 8 6

Kink-turn from U4

156

Motif group IL_49767.8

Basepair signature:
cWW-cWW-tWH-L-tHS-cWW

0.00 -266.01 10 8

UAA/GAN with extra cWW

157

Motif group IL_20245.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L

0.00 -267.26 18 14

158

Motif group IL_87290.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L

0.00 -267.56 14 12

Kink-turn related

159

Motif group IL_01176.1

Basepair signature:
cWW-L-R-L-R-L-R-L-cWW

0.00 -270.05 11 9

160

Motif group IL_63519.1

Basepair signature:
cWW-cWW-L-R-cSH-cWW

0.00 -270.09 9 7

161

Motif group IL_21001.1

Basepair signature:
cWW-L-R-tHW-L-cWW

0.00 -271.61 8 7

162

Motif group IL_60657.1

Basepair signature:
cWW-cWW-L-R-L-cWW-L-L-R-L-R-L-R

0.00 -275.84 13 11

163

Motif group IL_69145.3

Basepair signature:
cWW-L-cWW-L-R-L-R-R

0.00 -277.16 10 7

Pseudoknot

164

Motif group IL_62654.1

Basepair signature:
cWW-tSH-tHH-tHS-cWW

0.00 -278.06 11 9

tSH-tHH-tHS

165

Motif group IL_74367.1

Basepair signature:
cWW-L-R-L-R-L-R-cWW

0.00 -278.99 7 7

166

Motif group IL_29471.1

Basepair signature:
cWW-cWW-L-tHS-L-cWW

0.00 -279.52 9 8

167

Motif group IL_26728.3

Basepair signature:
cWW-cSH-R-cSH-cWW-cWW

0.00 -281.77 9 7

168

Motif group IL_70096.1

Basepair signature:
cWW-L-cWW-cWW

0.00 -283.23 12 9

Kink-turn related

169

Motif group IL_17973.1

Basepair signature:
cWW-cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R

0.00 -285.68 12 12

170

Motif group IL_45444.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -288.90 10 8

171

Motif group IL_64842.1

Basepair signature:
cWW-L-tWH-L-cWW-L-cSH

0.00 -290.93 11 8

172

Motif group IL_16218.2

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -295.04 7 7

173

Motif group IL_82706.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -296.93 9 8

174

Motif group IL_96236.1

Basepair signature:
cWW-tWW-cWW-L-cWW

0.00 -297.19 9 7

175

Motif group IL_67780.1

Basepair signature:
cWW-cSH-L-R-L-L-R-L

0.00 -302.65 10 7

176

Motif group IL_91592.1

Basepair signature:
cWW-L-tHH-L-cWW-L-L

0.00 -303.13 8 7

177

Motif group IL_88082.1

Basepair signature:
cWW-L-tSS-L-cWW-L

0.00 -303.67 7 7

178

Motif group IL_82426.6

Basepair signature:
cWW-cHW-R-L-cHW-cHW-cHW-L-cWW-R

0.00 -304.30 9 9

179

Motif group IL_95811.1

Basepair signature:
cWW-L-cWW-L-cWW-L-R-L

0.00 -304.55 12 9

Vitamin B12 Aptamer

180

Motif group IL_11344.2

Basepair signature:
cWW-cSS-L-cWW

0.00 -310.44 6 6

180 degree turn

181

Motif group IL_19516.1

Basepair signature:
cWW-L-R-L-R-L-cWW-L-cWW-L-L-L-R-L-R

0.00 -313.64 13 12

Pseudoknot

182

Motif group IL_74957.1

Basepair signature:
cWW-L-cHW-L-cWW-L

0.00 -314.31 10 9

cWH basepair with bulged bases

183

Motif group IL_51191.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -320.91 11 8

184

Motif group IL_38969.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -324.85 10 10

Reverse kink-turn related

185

Motif group IL_76758.2

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -325.11 10 8

Intercalated tWH

186

Motif group IL_85498.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -325.96 12 11

187

Motif group IL_90346.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -326.97 9 9

188

Motif group IL_83149.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

0.00 -328.91 18 16

189

Motif group IL_54896.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -330.07 12 11

190

Motif group IL_47108.1

Basepair signature:
cWW-L-R-L-tHH-L-cWW

0.00 -330.54 11 9

191

Motif group IL_74184.1

Basepair signature:
cWW-L-tHS-L-cWW-L-L-L

0.00 -330.55 10 10

192

Motif group IL_82683.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -331.16 11 8

193

Motif group IL_54737.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -331.71 17 15

194

Motif group IL_88974.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R

0.00 -334.51 12 10

195

Motif group IL_13394.1

Basepair signature:
cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -335.99 16 14

196

Motif group IL_91920.1

Basepair signature:
cWW-cWW-tHH-cWW

0.00 -337.50 9 8

197

Motif group IL_80209.1

Basepair signature:
cWW-cHW-L-cWW-L-L-R-L-R-L

0.00 -338.70 11 10

198

Motif group IL_29826.1

Basepair signature:
cWW-tSH-tHH-L-R-L-R-cSH-R-R-L-R-L-R-L-R-L-R-L-cWW

0.00 -345.98 20 17

199

Motif group IL_30730.1

Basepair signature:
cWW-cSH-L-R-L-cWW-L-R

0.00 -346.84 11 10

200

Motif group IL_05192.4

Basepair signature:
cWW-L-R-L-R-L-cWW-L

0.00 -347.62 9 7

201

Motif group IL_86136.1

Basepair signature:
cWW-tSH-L-cWW-L-L-R-L

0.00 -348.32 12 10

202

Motif group IL_53581.1

Basepair signature:
cWW-tWW-L-tWH-cSS-tSS-tWH-cSS-tWH-R-tSS-R-L-L-cWW-L-cWW

0.00 -348.85 15 12

Kink-turn related

203

Motif group IL_50715.3

Basepair signature:
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

0.00 -351.98 13 13

204

Motif group IL_21200.1

Basepair signature:
cWW-tSH-tHW-L-cWW-L

0.00 -356.36 9 7

tSH-tHW

205

Motif group IL_70335.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -364.71 10 8

206

Motif group IL_20463.1

Basepair signature:
cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R

0.00 -367.22 10 8

7x11 Sarcin-Ricin with pseudoknotted region; G-bulge

207

Motif group IL_61440.1

Basepair signature:
cWW-tSH-tHS-tWS-cWW

0.00 -369.40 9 8

Triple sheared

208

Motif group IL_17948.2

Basepair signature:
cWW-L-R-tSH-tHS-cWW

0.00 -370.39 7 6

Double sheared with non-canonical cWW

209

Motif group IL_84665.1

Basepair signature:
cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

0.00 -373.13 12 11

210

Motif group IL_38634.5

Basepair signature:
cWW-cWH-L-R-cWW

0.00 -373.42 10 9

cWH basepair and non-canonical AC

211

Motif group IL_75294.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -375.88 8 7

212

Motif group IL_88072.1

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -389.70 13 10

213

Motif group IL_81731.1

Basepair signature:
cWW-cWW-L-R-L-R-L-cWW-L-tWW-L-R-L

0.00 -391.68 14 11

214

Motif group IL_53448.1

Basepair signature:
cWW-tWH-cSH-cWW

0.00 -395.56 9 7

Receptor of 11-nt loop-receptor motif

215

Motif group IL_62012.1

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -396.84 10 8

Decoding loop related

216

Motif group IL_66798.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -398.93 8 8

AAA cross-strand stack

217

Motif group IL_65718.4

Basepair signature:
cWW-cSH-cWS-cWW-cWW

0.00 -406.81 10 9

218

Motif group IL_76460.1

Basepair signature:
cWW-cWW-L-tHS-L-R-L-cWW-L-L-R-L-L-R-L-R-L-R

0.00 -408.93 15 14

219

Motif group IL_67767.4

Basepair signature:
cWW-tWH-cWW-cSH-cWW

0.00 -409.31 10 8

Receptor of 11-nt loop-receptor motif

220

Motif group IL_06300.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -410.54 11 9

221

Motif group IL_68909.1

Basepair signature:
cWW-L-R-L-R-L-cWW

0.00 -411.74 9 7

222

Motif group IL_73789.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -418.60 11 9

223

Motif group IL_43622.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -425.12 10 9

224

Motif group IL_34739.3

Basepair signature:
cWW-tWW-tWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -425.91 19 16

225

Motif group IL_07173.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -429.54 11 9

226

Motif group IL_31558.1

Basepair signature:
cWW-L-tHS-L-R-cWW

0.00 -432.51 10 9

227

Motif group IL_64858.3

Basepair signature:
cWW-cHW-cWH-R-L-cWH-cHW-cHW-cWH-cWH-cHW-L-cWW-L-R-cWW-L-cWW

0.00 -437.47 15 13

228

Motif group IL_69000.1

Basepair signature:
cWW-L-cWW-L-cWW-L

0.00 -444.18 10 9

229

Motif group IL_11399.2

Basepair signature:
cWW-cHW-L-R-L-cWW

0.00 -448.57 9 8

230

Motif group IL_14177.2

Basepair signature:
cWW-L-R-L-cWW

0.00 -451.60 10 8

231

Motif group IL_71598.1

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -457.88 11 8

232

Motif group IL_89021.2

Basepair signature:
cWW-L-R-L-R-tHS-cWW

0.00 -463.84 9 8

UAA/GAN

233

Motif group IL_49751.4

Basepair signature:
cWW-cWW-cWW-cWW-cWW

0.00 -466.39 8 7

Triple non-canonical cWW pairs

234

Motif group IL_38507.2

Basepair signature:
cWW-tWH-L-tHS-cWW

0.00 -467.00 9 8

UAA/GAN

235

Motif group IL_68574.4

Basepair signature:
cWW-tHH-tHS-cWW

0.00 -470.27 10 8

236

Motif group IL_04785.1

Basepair signature:
cWW-L-R-L-R-cWW

0.00 -471.38 7 7

237

Motif group IL_17136.7

Basepair signature:
cWW-tSH-tHW-tHS-cWW

0.00 -472.65 8 7

tSH-tWH-tHS

238

Motif group IL_38862.4

Basepair signature:
cWW-cSH-R-tWH-tHS-cWW

0.00 -478.98 9 7

5x5 Sarcin-Ricin with intercalated A; G-bulge

239

Motif group IL_58112.2

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -479.70 9 7

240

Motif group IL_11415.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -480.09 11 9

241

Motif group IL_12566.4

Basepair signature:
cWW-L-tHS-L-cWW-L

0.00 -491.36 9 8

242

Motif group IL_59302.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -493.81 9 8

243

Motif group IL_28564.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -501.18 10 8

244

Motif group IL_10484.1

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -502.37 11 8

Double sheared

245

Motif group IL_97273.1

Basepair signature:
cWW-tSH-cWW-L-cWW-L

0.00 -504.53 10 9

246

Motif group IL_98347.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -525.57 10 9

247

Motif group IL_13404.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -532.54 10 8

Tandem non-canonical cWW pairs

248

Motif group IL_50730.2

Basepair signature:
cWW-tSH-tHS-tHS-cWW

0.00 -536.61 8 8

Triple sheared

249

Motif group IL_48444.6

Basepair signature:
cWW-L-R-cWW-cWW

0.00 -542.59 8 7

250

Motif group IL_61299.4

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -549.88 9 8

251

Motif group IL_02203.1

Basepair signature:
cWW-cSW-cWW-cWW

0.00 -556.57 11 9

252

Motif group IL_99646.2

Basepair signature:
cWW-tWH-tHS-cWW

0.00 -557.31 9 7

tSH-tHW

253

Motif group IL_19668.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -558.58 11 8

Isolated non-canonical cWW pair

254

Motif group IL_84251.1

Basepair signature:
cWW-L-tHS-cWW

0.00 -571.24 10 8

255

Motif group IL_23774.1

Basepair signature:
cWW-L-R-L-tHS-cWW

0.00 -571.74 8 7

UAA/GAN variation

256

Motif group IL_10389.1

Basepair signature:
cWW-L-cWW-L-cWW

0.00 -577.13 10 9

257

Motif group IL_76319.5

Basepair signature:
cWW-L-R-L-cWW

0.00 -578.79 12 9

258

Motif group IL_43644.1

Basepair signature:
cWW-cWW-L-R-cWW

0.00 -579.76 11 9

Other IL

259

Motif group IL_66997.2

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -584.80 10 9

260

Motif group IL_33323.1

Basepair signature:
cWW-L-R-L-cWW-L-L

0.00 -586.94 10 9

261

Motif group IL_58103.11

Basepair signature:
cWW-cSH-cWS-L-tSW-R-R-cWW

0.00 -599.36 8 7

Symmetric double minor groove platform

262

Motif group IL_89984.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -611.34 10 10

263

Motif group IL_28788.1

Basepair signature:
cWW-L-R-cWW

0.00 -612.22 9 8

264

Motif group IL_42314.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -613.39 11 9

265

Motif group IL_85033.2

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -638.20 8 7

Tandem non-canonical cWW pairs

266

Motif group IL_92446.2

Basepair signature:
cWW-cWW-R-L-L

0.00 -647.45 8 8

267

Motif group IL_51479.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -660.26 8 8

268

Motif group IL_47972.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -663.31 10 10

269

Motif group IL_64231.5

Basepair signature:
cWW-cWW-L-R-L-cWW

0.00 -668.67 8 8

270

Motif group IL_96759.1

Basepair signature:
cWW-tSH-tWW-cWW

0.00 -669.99 9 8

271

Motif group IL_19102.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -672.54 10 8

272

Motif group IL_77691.5

Basepair signature:
cWW-tSH-L-R-L-cWW

0.00 -674.50 9 8

UAA/GAN related

273

Motif group IL_77658.1

Basepair signature:
cWW-cWW-cWW-cWW

0.00 -687.10 8 8

Tandem non-canonical cWW pairs

274

Motif group IL_09705.15

Basepair signature:
cWW-tSH-tHS-cWW

0.00 -688.38 8 8

Double sheared

275

Motif group IL_25872.4

Basepair signature:
cWW-cWW-cWH-cWW

0.00 -691.21 9 8

276

Motif group IL_15698.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -716.49 9 8

277

Motif group IL_41344.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -719.16 10 9

278

Motif group IL_49061.1

Basepair signature:
cWW-L-R-L-cWW-L

0.00 -730.20 9 8

279

Motif group IL_07785.1

Basepair signature:
cWW-cWW-cWW

0.00 -734.20 8 8

Isolated non-canonical cWW pair

280

Motif group IL_99358.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -739.95 10 8

281

Motif group IL_69440.3

Basepair signature:
cWW-L-R-cSH-cWW

0.00 -741.12 12 9

282

Motif group IL_61476.2

Basepair signature:
cWW-tSH-L-cWW-L

0.00 -770.83 9 8

283

Motif group IL_46387.1

Basepair signature:
cWW-cWW-L-cWW-L

0.00 -776.78 9 9

284

Motif group IL_61341.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -798.97 10 9

285

Motif group IL_90351.1

Basepair signature:
cWW-L-R-L-cWW

0.00 -813.35 8 8

286

Motif group IL_51387.2

Basepair signature:
cWW-cSH-cWW-cWW

0.00 -823.55 9 9

287

Motif group IL_55516.2

Basepair signature:
cWW-cWW-cSH-cWW

0.00 -830.49 9 8

288

Motif group IL_14688.1

Basepair signature:
cWW-cWW-cWW

0.00 -847.37 9 9

Isolated non-canonical cWW pair

289

Motif group IL_08770.1

Basepair signature:
cWW-L-R-cWW

0.00 -851.28 9 9

290

Motif group IL_96371.1

Basepair signature:
cWW-tHH-cWW

0.00 -851.89 11 10

291

Motif group IL_36516.3

Basepair signature:
cWW-cWW-cSH-cWW-L

0.00 -860.90 9 8

292

Motif group IL_09990.4

Basepair signature:
cWW-L-R-L-cWW

0.00 -907.07 9 9

293

Motif group IL_10167.6

Basepair signature:
cWW-cHW-cWW

0.00 -910.62 10 9

Isolated cWH basepair

294

Motif group IL_87907.2

Basepair signature:
cWW-cWW-cWW

0.00 -915.20 9 9

Isolated non-canonical cWW pair

295

Motif group IL_42997.3

Basepair signature:
cWW-L-R-cWW

0.00 -928.48 9 9

Isolated cWS basepair

296

Motif group IL_57744.1

Basepair signature:
cWW-cWW-cWW

0.00 -931.40 9 9

Isolated non-canonical cWW pair

297

Motif group IL_67095.2

Basepair signature:
cWW-tWW-cWW

0.00 -936.74 10 9

Isolated tWW turn

298

Motif group IL_44465.1

Basepair signature:
cWW-L-R-cWW

0.00 -978.69 9 9

Isolated non-canonical cWW contact

299

Motif group IL_85599.2

Basepair signature:
cWW-tHS-cWW

0.00 -995.77 10 10

Isolated tHS basepair with bulges

300

Motif group IL_31531.3

Basepair signature:
cWW-L-R-L-cWW

0.00 -998.96 9 9

Decoding loop related

301

Motif group IL_31737.3

Basepair signature:
cWW-L-cWW

0.00 -1052.69 9 9

Stack and bulge

302

Motif group IL_10796.1

Basepair signature:
cWW-L-R-cWW

0.00 -1115.75 11 10

303

Motif group IL_28037.2

Basepair signature:
cWW-cWW-cWW

0.00 -1216.93 10 10

Isolated non-canonical cWW pair

304

Motif group IL_80298.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

0.00 -4339.73 18 18

305

Motif group IL_31504.1

Basepair signature:
cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -4344.56 11 11

306

Motif group IL_79846.1

Basepair signature:
cWW-R-L-L-tWH-cWW-L-L-L-R-L-R-cSH-L-L

0.00 -4363.41 16 14

307

Motif group IL_84409.1

Basepair signature:
cWW-tSS-L-cWH-L-cSH-cHW-tWH-cSS-tWH-tSW-cWS-R-L-R-cSH-R-cWW-L

0.00 -4503.76 15 14

308

Motif group IL_04332.3

Basepair signature:
cWW-L-R-L-cWW-L-L-R-L-R-L

0.00 -4521.07 13 12

309

Motif group IL_75283.2

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

0.00 -4723.50 12 12

310

Motif group IL_42218.2

Basepair signature:
cWW-L-R-cHW-cWW-L-L-L-R-L

0.00 -4738.90 13 11

311

Motif group IL_03350.1

Basepair signature:
cWW-tWH-cWW-L-L-cWW-L-L-L

0.00 -5055.35 8 8

Reverse kink-turn related

312

Motif group IL_96303.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-R

0.00 -5123.64 16 13

313

Motif group IL_43140.1

Basepair signature:
cWW-L-cWW-cWH-L-L

0.00 -5138.35 12 12

314

Motif group IL_04650.2

Basepair signature:
cWW-cWW-L-cWW-L-R-L-L-cSH

0.00 -5167.33 12 11

315

Motif group IL_64048.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R

0.00 -5179.56 13 12

316

Motif group IL_30441.1

Basepair signature:
cWW-cSH-tSW-tHW-cWW-L-L-R-L-L-R

0.00 -5194.74 16 13

317

Motif group IL_53787.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L-R

0.00 -5200.38 14 12

Pseudoknot

318

Motif group IL_19852.1

Basepair signature:
cWW-tWH-cWW-cWH-cWH-cWH

0.00 -5205.63 14 12

Part of G-quadruplex

319

Motif group IL_32056.1

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L-R-L

0.00 -5209.12 12 12

320

Motif group IL_49971.1

Basepair signature:
cWW-cWH-cWW-cWW-L-L-R

0.00 -5219.64 12 11

321

Motif group IL_81516.2

Basepair signature:
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

0.00 -5294.59 12 11

322

Motif group IL_19897.3

Basepair signature:
cWW-L-cWW-L-L-tWH-R-L

0.00 -5316.64 13 10

323

Motif group IL_17765.1

Basepair signature:
cWW-tWH-cHW-L-tSS-cSS-cWW-R-L

0.00 -5375.02 13 11

324

Motif group IL_44624.1

Basepair signature:
cWW-tWH-cWW-L-cWW-tSS-cSS-cWW-L

0.00 -5376.43 13 11

325

Motif group IL_07469.2

Basepair signature:
cWW-tSH-cWW-cSH-R-cWW

0.00 -5416.19 10 7

326

Motif group IL_47087.1

Basepair signature:
cWW-L-cWW-L-cWW-tWH-L-L

0.00 -5450.43 9 8

Kink-turn related

327

Motif group IL_21173.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -5538.09 10 9

328

Motif group IL_42032.1

Basepair signature:
cWW-cSH-cWW-tWH-L-cWW-L-L

0.00 -5659.61 9 6

329

Motif group IL_55917.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -5676.70 10 8

330

Motif group IL_00555.1

Basepair signature:
cWW-cWS-cWW-L-R

0.00 -5746.69 10 9

331

Motif group IL_53596.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -5761.46 10 9

332

Motif group IL_52743.1

Basepair signature:
cWW-tSW-L-cSW-L-cWW-L

0.00 -5823.20 9 9

333

Motif group IL_15218.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R-L

0.00 -5832.93 12 11

334

Motif group IL_82968.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L

0.00 -5980.26 13 11

335

Motif group IL_58960.1

Basepair signature:
cWW-L-cWW-L-tWW-L-R-L

0.00 -5994.25 12 11

336

Motif group IL_27393.10

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -6143.17 12 10

337

Motif group IL_46112.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -6179.67 13 11

338

Motif group IL_18354.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R-L-R

0.00 -6235.40 11 11

339

Motif group IL_88017.1

Basepair signature:
cWW-L-cWW-L-L-R-L

0.00 -6386.86 9 8

340

Motif group IL_33711.1

Basepair signature:
cWW-cSH-cWW-L-L-R-L

0.00 -6404.05 10 9

Minor groove platform

341

Motif group IL_26598.1

Basepair signature:
cWW-L-cWW-L-L-R-L-R

0.00 -6528.95 11 9

342

Motif group IL_24134.1

Basepair signature:
cWW-tSS-L-R-L-tHS-L-cWW-L-L

0.00 -6605.65 8 8

Kink-turn

343

Motif group IL_25412.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -6633.58 9 8

Major groove intercalation

344

Motif group IL_26222.2

Basepair signature:
cWW-cWS-cSH-tWH-R-L-R-cWW

0.00 -6846.23 10 8

C-loop with bulged stacked A's

345

Motif group IL_99380.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -7048.36 11 9

346

Motif group IL_38394.1

Basepair signature:
cWW-tWH-cWW-L-L-R-L

0.00 -7183.98 13 10

347

Motif group IL_22373.1

Basepair signature:
cWW-L-R-cSH-cSH-cWW

0.00 -7211.29 10 9

8-nt loop receptor

348

Motif group IL_94684.1

Basepair signature:
cWW-tWH-R-L-cWW-L-L

0.00 -7261.85 10 8

349

Motif group IL_01994.1

Basepair signature:
cWW-cWH-tHS-cWW-cSH-cWW

0.00 -7296.04 8 8

350

Motif group IL_46086.1

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -7386.53 11 9

351

Motif group IL_41203.4

Basepair signature:
cWW-L-cWW-L-L-R-cSH

0.00 -7443.83 9 9

SSU/LSU pseudoknot

352

Motif group IL_25573.1

Basepair signature:
cWW-tSW-L-cWW-L-L

0.00 -7561.19 10 9

353

Motif group IL_92634.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -7589.28 11 10

354

Motif group IL_87211.1

Basepair signature:
cWW-cSW-L-cWW-L

0.00 -7681.32 10 8

355

Motif group IL_49714.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -7707.20 10 9

Major groove intercalation

356

Motif group IL_70376.1

Basepair signature:
cWW-L-cWW-L

0.00 -8034.30 12 10

357

Motif group IL_95570.1

Basepair signature:
cWW-cWH-R-L-cWW

0.00 -8287.09 10 9

358

Motif group IL_78800.1

Basepair signature:
cWW-cSH-L-cWW

0.00 -8295.96 10 8

359

Motif group IL_38186.6

Basepair signature:
cWW-L-cWW-L-L-R

0.00 -8362.20 11 10

360

Motif group IL_07039.3

Basepair signature:
cWW-L-cWW

0.00 -8433.48 12 11

Major groove platform

361

Motif group IL_63596.11

Basepair signature:
cWW-cWS-cSH-tWH-cWW-L

0.00 -8710.96 9 9

C-loop

362

Motif group IL_26685.1

Basepair signature:
cWW-L-cWW-L

0.00 -8806.80 12 10

Multiple bulged bases

363

Motif group IL_44325.1

Basepair signature:
cWW-cWH-cWW-L

0.00 -9274.37 8 8

364

Motif group IL_80398.1

Basepair signature:
cWW-L-cSW-L-R-cWW

0.00 -9633.15 12 8

Minor groove platform

365

Motif group IL_61438.4

Basepair signature:
cWW-L-cWW

0.00 -9643.14 11 9

366

Motif group IL_06549.2

Basepair signature:
cWW-cWW

0.00 -9653.94 11 9

367

Motif group IL_07171.1

Basepair signature:
cWW-L-cWW-L

0.00 -9755.50 11 10

Bulged stacked bases

368

Motif group IL_57881.1

Basepair signature:
cWW-L-cWW

0.00 -9858.68 12 10

Multiple bulged bases

369

Motif group IL_00225.13

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 11

Single bulged G

370

Motif group IL_00881.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 11 10

371

Motif group IL_02555.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 10

Major groove platform with intercalation

372

Motif group IL_03109.3

Basepair signature:
cWW-cWS-tWH-cWW-L

0.00 -9999.00 11 10

C-loop

373

Motif group IL_10569.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 11

374

Motif group IL_14368.1

Basepair signature:
cWW-L-cWW-cSH

0.00 -9999.00 11 9

Major groove platform with intercalated tWH

375

Motif group IL_15052.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 10 10

Minor groove platform

376

Motif group IL_16386.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 11

377

Motif group IL_20031.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 12 9

378

Motif group IL_22551.4

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 9 9

379

Motif group IL_25463.1

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 9 8

380

Motif group IL_26793.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 11

Single stack bend

381

Motif group IL_29346.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 11 9

Left turn

382

Motif group IL_31462.6

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 11

Single bulged A

383

Motif group IL_33761.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 10

384

Motif group IL_42626.2

Basepair signature:
cWW-cWW

0.00 -9999.00 11 10

385

Motif group IL_42771.1

Basepair signature:
cWW-cWW

0.00 -9999.00 11 10

Multiple bulged bases

386

Motif group IL_47074.2

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 11 10

387

Motif group IL_47078.3

Basepair signature:
cWW-cWS-L-cWW-L

0.00 -9999.00 10 9

Minor groove platform

388

Motif group IL_48076.6

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 11 10

Major groove platform

389

Motif group IL_50694.7

Basepair signature:
cWW-tSH-cWW-L

0.00 -9999.00 11 10

Major groove platform; stack outside cWW

390

Motif group IL_51454.3

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 10 10

Minor groove platform

391

Motif group IL_56987.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 10

392

Motif group IL_59877.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 10

393

Motif group IL_61258.15

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 11

Single bulged C

394

Motif group IL_63775.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 12 11

395

Motif group IL_66635.5

Basepair signature:
cWW-L-cWW

0.00 -9999.00 9 9

Major groove intercalation

396

Motif group IL_68140.4

Basepair signature:
cWW-cSH-cWW

0.00 -9999.00 10 10

Major groove minor groove platform; mini C-loop

397

Motif group IL_73355.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 10 10

398

Motif group IL_73452.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 10

399

Motif group IL_76709.2

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 10 10

400

Motif group IL_79895.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 10 10

401

Motif group IL_81522.2

Basepair signature:
cWW-L-L-cWW

0.00 -9999.00 9 8

Major groove minor groove platform with intercalation; mini C-loop

402

Motif group IL_81831.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 10

Intercalated cWS

403

Motif group IL_82107.4

Basepair signature:
cWW-cWW

0.00 -9999.00 10 9

Multiple bulged bases

404

Motif group IL_82741.2

Basepair signature:
cWW-L-cWW-L-L

0.00 -9999.00 12 9

405

Motif group IL_83150.2

Basepair signature:
cWW-tHH-cWW-L-L

0.00 -9999.00 10 9

406

Motif group IL_83389.2

Basepair signature:
cWW-cWW

0.00 -9999.00 9 9

407

Motif group IL_84476.1

Basepair signature:
cWW-cWW

0.00 -9999.00 10 10

Multiple bulged bases

408

Motif group IL_89505.4

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 11

Single bulged U

409

Motif group IL_90729.1

Basepair signature:
cWW-L-cWW

0.00 -9999.00 11 10

Single stack bend

410

Motif group IL_94967.1

Basepair signature:
cWW-L-cWW-L

0.00 -9999.00 11 11

411

Motif group IL_95583.2

Basepair signature:
cWW-L-cWW

0.00 -9999.00 10 10

Minor groove platform, major groove intercalation

Coloring options: